RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5048
(319 letters)
>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA
{Escherichia coli [TaxId: 562]}
Length = 210
Score = 70.7 bits (172), Expect = 4e-15
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 68 VAMRIHDRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGAGNVIPG 126
+ R +P +F L VI GW +GL + G K KL IPP LAYG G + P
Sbjct: 141 EFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGVPGIPPN 197
>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein
(MIP) {Legionella pneumophila [TaxId: 446]}
Length = 204
Score = 67.2 bits (163), Expect = 8e-14
Identities = 18/53 (33%), Positives = 22/53 (41%)
Query: 75 RDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGAGNVIPGG 127
T V QVI GW + L M G ++ +P LAYG R G I
Sbjct: 137 EKTGKPATFQVSQVIPGWTEALQLMPAGSTWEIYVPSGLAYGPRSVGGPIGPN 189
>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma
genitalium [TaxId: 2097]}
Length = 85
Score = 56.6 bits (136), Expect = 3e-11
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 70 MRIHDRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGAGN 122
++ T G IKG++ GL M V +K+ L + Y + +
Sbjct: 22 ASASAQNYELTI--GSNSFIKGFETGLIAMKVNQKKTLALTFPSDYHVKELQS 72
>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey
(Saimiri boliviensis) [TaxId: 27679]}
Length = 111
Score = 57.1 bits (137), Expect = 4e-11
Identities = 26/60 (43%), Positives = 32/60 (53%)
Query: 68 VAMRIHDRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGAGNVIPGG 127
HDR++PF F++G GQVIK WD G+ M GE L P AYG G+ IP
Sbjct: 39 KFDSSHDRNEPFVFSIGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGATGSLPKIPSN 98
>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey
(Saimiri boliviensis) [TaxId: 27679]}
Length = 115
Score = 55.8 bits (134), Expect = 1e-10
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 2/67 (2%)
Query: 63 FKLTLVAMRIHDRDQPFTF-TLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGAG 121
+ RD FT + G D+ L +M E+ L + P +G+ G
Sbjct: 34 LEGRCGGRVFDCRDVAFTVGEGEDHDIPIGIDKALEKMQREEQCILHLGPRYGFGEAGKP 93
Query: 122 NV-IPGG 127
I
Sbjct: 94 KFGIEPN 100
>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis
elegans [TaxId: 6239]}
Length = 118
Score = 55.9 bits (134), Expect = 1e-10
Identities = 27/60 (45%), Positives = 31/60 (51%)
Query: 68 VAMRIHDRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGAGNVIPGG 127
DR F+F LG G VIKGWD G+ M GE + TI YGD G+ IPGG
Sbjct: 45 KFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPPKIPGG 104
>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an
immunophilin {Human (Homo sapiens) [TaxId: 9606]}
Length = 107
Score = 55.6 bits (133), Expect = 1e-10
Identities = 26/60 (43%), Positives = 37/60 (61%)
Query: 68 VAMRIHDRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGAGNVIPGG 127
DR++PF F LG +VI+GW++G+ +M VG++ KLTI P AYG G +IP
Sbjct: 35 KFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPH 94
>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 125
Score = 56.0 bits (134), Expect = 1e-10
Identities = 35/84 (41%), Positives = 45/84 (53%), Gaps = 11/84 (13%)
Query: 55 CVSSFKPTFKLTLVAMRIHDRDQPFTFTLGVGQVIKGWDQ------GLTEMCVGEKRKLT 108
+ + + V ++R +P TF +GVG+VIKGWDQ G+ M G KR L
Sbjct: 29 IKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLTGGKRTLR 88
Query: 109 IPPALAYGDRGAGN-----VIPGG 127
IPP LAYGDRGAG +IP
Sbjct: 89 IPPELAYGDRGAGCKGGSCLIPPA 112
>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 113
Score = 52.8 bits (126), Expect = 1e-09
Identities = 30/60 (50%), Positives = 36/60 (60%)
Query: 68 VAMRIHDRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGAGNVIPGG 127
DR PF +GVGQVIKGWD G+ ++ VGEK +LTIP AYG RG +IP
Sbjct: 41 KFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFPGLIPPN 100
>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo
sapiens) [TaxId: 9606]}
Length = 120
Score = 52.4 bits (125), Expect = 2e-09
Identities = 24/60 (40%), Positives = 29/60 (48%)
Query: 68 VAMRIHDRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGAGNVIPGG 127
DR F+F LG G+VIK WD + M VGE +T P AYG G+ IP
Sbjct: 46 KFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPN 105
>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein
(MIP) {Trypanosoma cruzi [TaxId: 5693]}
Length = 160
Score = 51.7 bits (123), Expect = 7e-09
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 77 QPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGAGNVIPGG 127
+ T +VIKGW + L M G++ +L IP LAYG G G +IP
Sbjct: 76 RGKPTTFRPNEVIKGWTEALQLMREGDRWRLFIPYDLAYGVTGGGGMIPPY 126
>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus
thermolithotrophicus [TaxId: 2186]}
Length = 151
Score = 50.6 bits (120), Expect = 2e-08
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 57 SSFKPTFKLTLVAMRIHDRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYG 116
+S + K + +P F +G GQ+I+G+++ + +M VG+++ + IP AYG
Sbjct: 24 TSIEEVAKEAGI-YAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKAYG 82
Query: 117 DRGAGNV 123
+R +
Sbjct: 83 NRNEMLI 89
>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]}
Length = 116
Score = 49.0 bits (116), Expect = 3e-08
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 73 HDRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRG-AGNVIPGG 127
+P +F +GVG+VI+GWD+ L M GEK +L I P AYG +G IP
Sbjct: 48 KKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPN 103
>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human
(Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 45.1 bits (106), Expect = 8e-07
Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 1/59 (1%)
Query: 70 MRIHDRDQPFTFTLGVGQVIKGWDQGLTEMCVGEKRKLTIPPALAYGDRGA-GNVIPGG 127
+ + + G ++ + M GE + + P+ A+G G IP
Sbjct: 42 LFDQRELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPN 100
>d3buxb2 a.48.1.1 (B:48-177) N-terminal domain of cbl (N-cbl)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 130
Score = 25.6 bits (56), Expect = 4.7
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 18 KTPCIRPRSTLSLSPYSLSLILPRRAENLK 47
C P+ L SP + +LP ++L+
Sbjct: 20 VRLCQNPKLALKNSPPYILDLLPDTYQHLR 49
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.136 0.419
Gapped
Lambda K H
0.267 0.0602 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,134,749
Number of extensions: 50110
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 15
Length of query: 319
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 234
Effective length of database: 1,240,546
Effective search space: 290287764
Effective search space used: 290287764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.5 bits)