BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy5049
         (153 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2QTL|A Chain A, Crystal Structure Of The Fad-Containing Fnr-Like Module Of
           Human Methionine Synthase Reductase
          Length = 539

 Score = 27.7 bits (60), Expect = 2.9,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 4/35 (11%)

Query: 117 RSANLWNRPHSPSLMAVFRGGGPGIFP----LQHR 147
           R+ N ++ P  PS+  +  G G GI P    LQHR
Sbjct: 366 RTTNSFHLPDDPSIPIIMVGPGTGIAPFIGFLQHR 400


>pdb|2QTZ|A Chain A, Crystal Structure Of The Nadp+-Bound Fad-Containing
           Fnr-Like Module Of Human Methionine Synthase Reductase
          Length = 539

 Score = 27.7 bits (60), Expect = 2.9,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 4/35 (11%)

Query: 117 RSANLWNRPHSPSLMAVFRGGGPGIFP----LQHR 147
           R+ N ++ P  PS+  +  G G GI P    LQHR
Sbjct: 366 RTTNSFHLPDDPSIPIIMVGPGTGIAPFIGFLQHR 400


>pdb|2ACX|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 6
          Bound To Amppnp
 pdb|2ACX|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 6
          Bound To Amppnp
          Length = 576

 Score = 26.2 bits (56), Expect = 7.9,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 19 NRLGLILYVLFQAQTKPPRSHCICFISGIRRISVLAHNTR 58
          N +G +L+  F A T+P  S C+ F+ G+    V   + R
Sbjct: 60 NPIGRLLFREFCA-TRPELSRCVAFLDGVAEYEVTPDDKR 98


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.142    0.431 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,826,907
Number of Sequences: 62578
Number of extensions: 119641
Number of successful extensions: 330
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 330
Number of HSP's gapped (non-prelim): 3
length of query: 153
length of database: 14,973,337
effective HSP length: 90
effective length of query: 63
effective length of database: 9,341,317
effective search space: 588502971
effective search space used: 588502971
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.7 bits)