BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5049
(153 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P97363|SPTC2_MOUSE Serine palmitoyltransferase 2 OS=Mus musculus GN=Sptlc2 PE=2 SV=2
Length = 560
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/42 (54%), Positives = 33/42 (78%)
Query: 50 ISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVG 91
I LA NTRYFRR+L +G I+YG+ DSPVVP++++ +K+G
Sbjct: 437 IQQLAENTRYFRRRLKEMGFIIYGNEDSPVVPLMLYMPAKIG 478
>sp|O15270|SPTC2_HUMAN Serine palmitoyltransferase 2 OS=Homo sapiens GN=SPTLC2 PE=1 SV=1
Length = 562
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 33/42 (78%)
Query: 50 ISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVG 91
+ LA NTRYFRR+L +G I+YG+ DSPVVP++++ +K+G
Sbjct: 439 VQQLAENTRYFRRRLKEMGFIIYGNEDSPVVPLMLYMPAKIG 480
>sp|Q8BG54|SPTC3_MOUSE Serine palmitoyltransferase 3 OS=Mus musculus GN=Sptlc3 PE=2 SV=1
Length = 563
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 12/86 (13%)
Query: 44 ISGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS--------- 94
I G+ RI L N +YFRR+L +G I+YG+ SPV+PVL++ +KV S
Sbjct: 425 IGGMERIQQLKENIKYFRRRLKEMGFIIYGNDFSPVIPVLLYMPAKVSAFSRFLLKKKIS 484
Query: 95 -IGLGVEQTALNDGLSLY--ESSHLR 117
+ +G T+L +G + + S+H R
Sbjct: 485 VVVVGFPATSLPEGRARFSMSSAHTR 510
Score = 31.2 bits (69), Expect = 2.8, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 4 ISVLAQNTRYFRRKLNRLGLILY 26
I L +N +YFRR+L +G I+Y
Sbjct: 431 IQQLKENIKYFRRRLKEMGFIIY 453
>sp|O54694|SPTC2_CRIGR Serine palmitoyltransferase 2 OS=Cricetulus griseus GN=SPTLC2 PE=2
SV=1
Length = 560
Score = 56.6 bits (135), Expect = 6e-08, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 33/42 (78%)
Query: 50 ISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVG 91
+ LA NT+YFRR+L +G I+YG+ DSPVVP++++ +K+G
Sbjct: 437 VQQLAENTKYFRRRLKEMGFIIYGNEDSPVVPLMLYMPAKIG 478
>sp|Q20375|SPTC2_CAEEL Serine palmitoyltransferase 2 OS=Caenorhabditis elegans GN=sptl-2
PE=2 SV=1
Length = 558
Score = 56.2 bits (134), Expect = 8e-08, Method: Composition-based stats.
Identities = 25/46 (54%), Positives = 32/46 (69%)
Query: 46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVG 91
G +RI LA N+ YFR KL + G IVYG DSPVVP+L++F + G
Sbjct: 440 GAQRIERLARNSHYFRMKLKQNGFIVYGSNDSPVVPMLIYFPTMCG 485
>sp|Q9NUV7|SPTC3_HUMAN Serine palmitoyltransferase 3 OS=Homo sapiens GN=SPTLC3 PE=1 SV=3
Length = 552
Score = 53.5 bits (127), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 34/46 (73%)
Query: 46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVG 91
G++R+ LA NTRYFR++L +G I+YG+ ++ VVP+L++ KV
Sbjct: 427 GLQRVQQLAKNTRYFRQRLQEMGFIIYGNENASVVPLLLYMPGKVA 472
Score = 38.5 bits (88), Expect = 0.018, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 14/122 (11%)
Query: 1 IRLISVLAQNTRYFRRKLNRLGLILYVLFQAQTKPPRSHCICFISGIRRISVLAHNTRYF 60
++ + LA+NTRYFR++L +G I+Y A P + ++ G +++ A R+
Sbjct: 428 LQRVQQLAKNTRYFRQRLQEMGFIIYGNENASVVP----LLLYMPG--KVAAFA---RHM 478
Query: 61 RRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTSIGLGVEQTALN---DGLSLYESSHLR 117
K ++G++V G +P+ F T L AL+ D L L S H +
Sbjct: 479 LEK--KIGVVVVGFPATPLAEARARFCVSAAHTREMLDTVLEALDEMGDLLQLKYSRHKK 536
Query: 118 SA 119
SA
Sbjct: 537 SA 538
>sp|Q9XVI6|SPTC3_CAEEL Serine palmitoyltransferase 3 OS=Caenorhabditis elegans GN=sptl-3
PE=3 SV=2
Length = 512
Score = 53.5 bits (127), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 32/42 (76%)
Query: 53 LAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS 94
L N+RYFR++L + G +VYG+ DSPVVP++ F+ +KV + S
Sbjct: 408 LLENSRYFRKELRKRGFLVYGNNDSPVVPLMTFYITKVVEFS 449
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 16/106 (15%)
Query: 7 LAQNTRYFRRKLNRLGLILYVLFQAQTKPPRSHCICFISGIRRISVLAHNTRYFRRKLNR 66
L +N+RYFR++L + G ++Y + P + I + R +L HN
Sbjct: 408 LLENSRYFRKELRKRGFLVYGNNDSPVVPLMTFYITKVVEFSR-RMLKHN---------- 456
Query: 67 LGLIVYGHRDSPVVPVLVFFFSKVGQTSIGL-----GVEQTALNDG 107
+G++ G+ +P++ V F T L VEQ + G
Sbjct: 457 IGIVAVGYPATPLLEARVRFCLSADHTKEHLDYILEAVEQVGMETG 502
>sp|P40970|LCB2_YEAST Serine palmitoyltransferase 2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=LCB2 PE=1 SV=1
Length = 561
Score = 53.1 bits (126), Expect = 6e-07, Method: Composition-based stats.
Identities = 25/50 (50%), Positives = 33/50 (66%)
Query: 41 ICFISGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKV 90
IC G R+ +A N+RY R L RLG IVYG DSPV+P+L++ SK+
Sbjct: 417 ICPGQGTERLQRIAFNSRYLRLALQRLGFIVYGVADSPVIPLLLYCPSKM 466
>sp|Q09925|LCB2_SCHPO Serine palmitoyltransferase 2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=lcb2 PE=3 SV=1
Length = 603
Score = 52.8 bits (125), Expect = 8e-07, Method: Composition-based stats.
Identities = 24/50 (48%), Positives = 34/50 (68%)
Query: 45 SGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS 94
+G+ RI LA N+RY R L RLG I++G+ DSPVVP+L++ K+ S
Sbjct: 453 AGLERIERLAFNSRYIRLGLKRLGFIIFGNDDSPVVPLLLYNPGKINAFS 502
>sp|P48241|LCB2_KLULA Serine palmitoyltransferase 2 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=LCB2 PE=3 SV=2
Length = 562
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/45 (51%), Positives = 30/45 (66%)
Query: 46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKV 90
G R+ +A N RY R L RLG IVYG DSPV+P+L++ SK+
Sbjct: 421 GQERLQRIAFNARYLRLALQRLGFIVYGIADSPVIPMLLYAPSKM 465
>sp|Q54EX5|SPTC2_DICDI Serine palmitoyltransferase 2 OS=Dictyostelium discoideum GN=sptB
PE=1 SV=1
Length = 490
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 34/50 (68%)
Query: 45 SGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS 94
+G +++ L N+ YFR K+ +G ++ G++DSPV+P+++F +K+ S
Sbjct: 376 TGAKKLKQLHDNSNYFREKIREMGFVILGNKDSPVIPLMLFNPAKLSAFS 425
>sp|Q5JK39|LCB2D_ORYSJ Long chain base biosynthesis protein 2d OS=Oryza sativa subsp.
japonica GN=Os01g0928800 PE=2 SV=1
Length = 489
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 31/45 (68%)
Query: 46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKV 90
G ++++ + N+ +FR +L ++G V G DSPV+P++++ +K+
Sbjct: 367 GAKKLAQIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPAKI 411
>sp|Q8RYL1|LCB2B_ORYSJ Long chain base biosynthesis protein 2b OS=Oryza sativa subsp.
japonica GN=Os01g0928600 PE=2 SV=1
Length = 499
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 27/40 (67%)
Query: 46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVF 85
G ++I+ + N+ +FR +L ++G V G DSPV+P +V+
Sbjct: 378 GAKKIAQIRDNSNFFRSELQKMGFEVLGDNDSPVMPFMVY 417
>sp|Q2R3K3|LCB2A_ORYSJ Long chain base biosynthesis protein 2a OS=Oryza sativa subsp.
japonica GN=Os11g0516000 PE=2 SV=1
Length = 488
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 31/45 (68%)
Query: 46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKV 90
G ++++ + N+ +FR +L ++G V G DSPV+P++++ +K+
Sbjct: 367 GAQKLARIRENSNFFRSELKKMGFEVLGDNDSPVMPIMLYNPAKI 411
>sp|Q9M304|LCB2B_ARATH Long chain base biosynthesis protein 2b OS=Arabidopsis thaliana
GN=LCB2b PE=1 SV=1
Length = 489
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 31/45 (68%)
Query: 46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKV 90
G ++++ + N+ +FR +L ++G V G DSPV+P++++ +K+
Sbjct: 367 GAQKLARIRENSNFFRAELQKMGFEVLGDNDSPVMPIMLYNPAKI 411
>sp|Q8RYL0|LCB2C_ORYSJ Long chain base biosynthesis protein 2c OS=Oryza sativa subsp.
japonica GN=Os01g0928700 PE=3 SV=1
Length = 497
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 28/40 (70%)
Query: 46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVF 85
G ++++ + N+ +FR +L ++G V G DSPV+P++++
Sbjct: 375 GAKKLAQIRENSNFFRSELEKMGFEVLGDNDSPVMPIMLY 414
>sp|Q9LSZ9|LCB2A_ARATH Long chain base biosynthesis protein 2a OS=Arabidopsis thaliana
GN=LCB2a PE=1 SV=1
Length = 489
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 31/45 (68%)
Query: 46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKV 90
G ++++ + N+ +FR +L ++G V G DSPV+P++++ +K+
Sbjct: 367 GAQKLARIRENSNFFRAELQKMGFEVLGDNDSPVMPIMLYNPAKI 411
>sp|Q67N86|BIOF_SYMTH 8-amino-7-oxononanoate synthase OS=Symbiobacterium thermophilum
(strain T / IAM 14863) GN=STH1872 PE=3 SV=1
Length = 392
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 48 RRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS 94
RI L NTRYF+ +L LG G ++P+ PV+V K Q S
Sbjct: 292 ERIDRLWENTRYFKERLTELGFDT-GKSETPITPVIVGDEVKAMQLS 337
>sp|Q5SHZ8|BIKB_THET8 8-amino-7-oxononanoate synthase/2-amino-3-ketobutyrate coenzyme A
ligase OS=Thermus thermophilus (strain HB8 / ATCC 27634
/ DSM 579) GN=TTHA1582 PE=1 SV=1
Length = 395
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 48 RRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVL 83
R+ L NTRYF+R+L RLG G + +P+ PVL
Sbjct: 294 ERVERLWENTRYFKRELARLGYDTLGSQ-TPITPVL 328
>sp|Q1QIW5|LGT_NITHX Prolipoprotein diacylglyceryl transferase OS=Nitrobacter
hamburgensis (strain X14 / DSM 10229) GN=lgt PE=3 SV=1
Length = 291
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 50/108 (46%), Gaps = 10/108 (9%)
Query: 41 ICFISGIRRISVLAHNTRYFRR------KLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS 94
I I G R VL +N +F R ++ + G+ +G VV V + F K G
Sbjct: 70 IGIILGGRTGYVLFYNLDFFIRHPAEIFEIWKGGMSFHGGFMGCVVAV-ILFCRKHGLPI 128
Query: 95 IGLGVEQTALND-GLSLYESSHLRSANLWNRPHSPSL--MAVFRGGGP 139
+ LG TA+ GL L ++ ++ LW RP PSL VF GGP
Sbjct: 129 LSLGDVATAVGPIGLFLGRIANFINSELWGRPADPSLPWAMVFPNGGP 176
>sp|A6TU88|BIOF_ALKMQ 8-amino-7-oxononanoate synthase OS=Alkaliphilus metalliredigens
(strain QYMF) GN=Amet_3634 PE=3 SV=1
Length = 395
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 53 LAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLV 84
L N +YF+ K+++LG + GH +P+ PV++
Sbjct: 300 LWDNAKYFKEKISQLGFDI-GHSGTPITPVII 330
>sp|Q3SPN4|LGT_NITWN Prolipoprotein diacylglyceryl transferase OS=Nitrobacter
winogradskyi (strain Nb-255 / ATCC 25391) GN=lgt PE=3
SV=1
Length = 291
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 40 CICFISGIRRISVLAHNTRYFRR------KLNRLGLIVYGHRDSPVVPVLVFFFSKVGQT 93
I I G R VL +N YF R +L G+ +G V V + F + G
Sbjct: 69 TIAIIVGGRVGYVLFYNPDYFIRYPAQIFQLWNGGMSFHGGFMGCVAAV-ILFCRRHGLP 127
Query: 94 SIGLGVEQTALND-GLSLYESSHLRSANLWNRPHSPSL--MAVFRGGGP 139
+ LG TA+ GL L ++ ++ LW RP P L VF GGP
Sbjct: 128 ILSLGDVATAVGPIGLFLGRIANFINSELWGRPADPGLPWAMVFPNGGP 176
>sp|Q5FRU4|LGT_GLUOX Prolipoprotein diacylglyceryl transferase OS=Gluconobacter oxydans
(strain 621H) GN=lgt PE=3 SV=1
Length = 273
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 31/83 (37%), Gaps = 27/83 (32%)
Query: 59 YFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTSIGLGVEQTALNDGLSLYESSHLRS 118
YF K RL + + R PVVP+ GL L ++ +
Sbjct: 114 YFSWK-TRLSFLAFADRIVPVVPI------------------------GLGLGRCANFVN 148
Query: 119 ANLWNRPHSPSL--MAVFRGGGP 139
LW RP SP L +F GGP
Sbjct: 149 GELWGRPASPDLPWAMIFPTGGP 171
>sp|Q9S814|EIN2_ARATH Ethylene-insensitive protein 2 OS=Arabidopsis thaliana GN=EIN2 PE=1
SV=1
Length = 1294
Score = 30.0 bits (66), Expect = 5.3, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 77 SPVVPV----LVFFFSKVGQTSIGLGVEQTALNDGLSLYESSHLRSANLWNRPHSPSLMA 132
SP++PV L+FF S++ + G E L+D L + + L A + +P+L
Sbjct: 286 SPLIPVVFLMLLFFSSQITALAWAFGGE-VVLHDFLKIEIPAWLHRATIRILAVAPALYC 344
Query: 133 VFRGGGPGIFPL 144
V+ G GI+ L
Sbjct: 345 VWTSGADGIYQL 356
>sp|A9KI94|CARB_CLOPH Carbamoyl-phosphate synthase large chain OS=Clostridium
phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg)
GN=carB PE=3 SV=1
Length = 1066
Score = 29.6 bits (65), Expect = 6.6, Method: Composition-based stats.
Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 22/124 (17%)
Query: 6 VLAQNTRYFRRKLNRLGLI----------LYVLFQAQTKPPRSHCICFISGIRRISVLAH 55
V+ TR + LN +GLI +YV+ + P S + +IS + I +++
Sbjct: 801 VIVDYTRKLAKSLNVIGLINIQFIVYNEEVYVI---EVNPRSSRTVPYISKVTNIPIVSL 857
Query: 56 NTR-YFRRKLNRLGLIVYG-----HRDSPVVPVLVFFFSKVGQTSIGLGVEQTALNDGLS 109
++ K+ LG YG D + + VF F K+ IGLG E + + L
Sbjct: 858 ASKAVLGEKIADLG---YGTGLAKKADYIAIKMPVFSFEKLRGADIGLGPEMKSTGECLG 914
Query: 110 LYES 113
+ ++
Sbjct: 915 IAKT 918
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.142 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,130,236
Number of Sequences: 539616
Number of extensions: 2138973
Number of successful extensions: 4937
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 4908
Number of HSP's gapped (non-prelim): 38
length of query: 153
length of database: 191,569,459
effective HSP length: 107
effective length of query: 46
effective length of database: 133,830,547
effective search space: 6156205162
effective search space used: 6156205162
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (26.2 bits)