Query psy5049
Match_columns 153
No_of_seqs 107 out of 1085
Neff 5.8
Searched_HMMs 46136
Date Sat Aug 17 00:25:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5049.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5049hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0156 BioF 7-keto-8-aminopel 99.8 1.3E-20 2.8E-25 164.4 10.6 114 12-133 259-387 (388)
2 PLN02955 8-amino-7-oxononanoat 99.7 1.2E-17 2.6E-22 149.0 10.1 110 20-141 342-466 (476)
3 KOG1359|consensus 99.7 1.5E-16 3.2E-21 135.4 9.1 106 29-136 292-412 (417)
4 KOG1360|consensus 99.6 1.4E-15 3E-20 133.5 9.8 119 20-143 396-532 (570)
5 KOG1357|consensus 99.5 1.4E-14 3.1E-19 128.0 3.0 107 27-134 373-500 (519)
6 PRK13580 serine hydroxymethylt 99.4 8.9E-13 1.9E-17 118.3 9.8 107 28-135 313-444 (493)
7 PLN02483 serine palmitoyltrans 99.2 2.9E-10 6.3E-15 101.4 11.3 90 47-137 368-467 (489)
8 PLN03227 serine palmitoyltrans 99.2 2.4E-10 5.1E-15 99.0 10.4 106 28-136 237-382 (392)
9 TIGR01821 5aminolev_synth 5-am 99.1 3.9E-10 8.4E-15 96.7 11.3 90 46-137 297-397 (402)
10 PRK13392 5-aminolevulinate syn 99.1 2.9E-10 6.2E-15 97.9 10.3 93 45-139 297-400 (410)
11 PRK13393 5-aminolevulinate syn 99.1 9.9E-10 2.2E-14 94.6 11.3 89 46-136 297-396 (406)
12 PRK09064 5-aminolevulinate syn 99.1 1.3E-09 2.7E-14 93.5 11.3 89 46-136 298-397 (407)
13 PLN02822 serine palmitoyltrans 99.0 1.5E-09 3.2E-14 96.8 9.8 111 19-134 338-475 (481)
14 PRK13034 serine hydroxymethylt 99.0 1E-09 2.3E-14 95.7 7.7 86 46-135 284-391 (416)
15 PRK07179 hypothetical protein; 98.8 6.3E-08 1.4E-12 83.3 11.4 93 45-140 300-402 (407)
16 KOG1358|consensus 98.7 1E-08 2.2E-13 90.1 5.1 116 14-135 321-464 (467)
17 TIGR01822 2am3keto_CoA 2-amino 98.7 1.4E-07 2.9E-12 80.2 11.3 89 46-136 291-389 (393)
18 KOG1357|consensus 98.5 5.6E-08 1.2E-12 86.6 3.4 38 1-38 404-441 (519)
19 TIGR01825 gly_Cac_T_rel pyrido 98.3 1.3E-05 2.9E-10 67.7 11.4 89 46-136 283-381 (385)
20 PRK06939 2-amino-3-ketobutyrat 98.2 2.5E-05 5.4E-10 65.9 11.2 89 46-136 295-393 (397)
21 PRK05937 8-amino-7-oxononanoat 97.9 8.7E-05 1.9E-09 63.3 9.3 85 45-141 262-355 (370)
22 PRK02948 cysteine desulfurase; 97.9 5.5E-05 1.2E-09 64.2 7.5 91 45-136 254-374 (381)
23 PRK05958 8-amino-7-oxononanoat 97.8 0.00024 5.3E-09 59.5 10.8 84 47-132 290-383 (385)
24 TIGR00858 bioF 8-amino-7-oxono 97.8 0.00019 4.2E-09 59.4 10.0 83 46-130 267-359 (360)
25 TIGR01976 am_tr_V_VC1184 cyste 97.8 7.7E-05 1.7E-09 63.4 7.5 80 48-127 294-395 (397)
26 PRK07505 hypothetical protein; 97.8 0.00031 6.6E-09 60.5 10.7 86 46-136 304-399 (402)
27 TIGR03812 tyr_de_CO2_Arch tyro 97.7 0.00033 7.2E-09 58.8 9.8 84 47-132 287-372 (373)
28 PTZ00094 serine hydroxymethylt 97.7 0.0002 4.4E-09 63.1 8.4 91 45-136 300-408 (452)
29 PRK09331 Sep-tRNA:Cys-tRNA syn 97.6 0.0003 6.4E-09 60.5 8.7 100 5-138 283-383 (387)
30 cd06450 DOPA_deC_like DOPA dec 97.6 0.00031 6.8E-09 58.2 8.2 87 45-132 245-344 (345)
31 cd00378 SHMT Serine-glycine hy 97.6 0.00056 1.2E-08 58.3 9.6 92 45-137 276-386 (402)
32 cd06454 KBL_like KBL_like; thi 97.6 0.0011 2.4E-08 54.8 10.8 86 46-132 252-347 (349)
33 PRK13520 L-tyrosine decarboxyl 97.5 0.0011 2.4E-08 55.5 10.6 86 47-134 282-369 (371)
34 PLN03226 serine hydroxymethylt 97.5 0.00025 5.4E-09 63.6 6.6 87 45-135 311-418 (475)
35 cd00613 GDC-P Glycine cleavage 97.5 0.00068 1.5E-08 57.5 9.0 81 47-127 307-396 (398)
36 TIGR02326 transamin_PhnW 2-ami 97.5 0.0012 2.6E-08 55.6 10.2 87 46-133 262-359 (363)
37 TIGR02539 SepCysS Sep-tRNA:Cys 97.4 0.00085 1.8E-08 57.2 8.4 80 50-135 270-367 (370)
38 PF00155 Aminotran_1_2: Aminot 97.1 0.0014 3E-08 54.8 6.7 78 45-127 273-361 (363)
39 cd06451 AGAT_like Alanine-glyo 97.1 0.0039 8.5E-08 52.1 9.3 87 46-133 257-354 (356)
40 PRK13479 2-aminoethylphosphona 97.1 0.006 1.3E-07 51.4 10.4 91 47-138 264-365 (368)
41 PRK07678 aminotransferase; Val 97.0 0.0037 8E-08 55.5 8.6 90 45-135 337-448 (451)
42 PRK00011 glyA serine hydroxyme 97.0 0.0057 1.2E-07 52.6 9.3 88 47-135 282-388 (416)
43 cd06502 TA_like Low-specificit 96.9 0.0066 1.4E-07 50.1 8.9 81 46-131 246-336 (338)
44 TIGR01885 Orn_aminotrans ornit 96.9 0.0044 9.5E-08 53.4 8.0 84 46-133 305-399 (401)
45 PRK10874 cysteine sulfinate de 96.9 0.0089 1.9E-07 51.1 9.4 88 47-135 295-397 (401)
46 PRK03715 argD acetylornithine 96.8 0.0055 1.2E-07 53.4 8.0 87 45-135 295-392 (395)
47 cd00610 OAT_like Acetyl ornith 96.8 0.0062 1.3E-07 51.8 8.0 82 47-132 312-411 (413)
48 PRK00615 glutamate-1-semialdeh 96.8 0.0038 8.2E-08 55.3 6.8 80 45-134 320-426 (433)
49 TIGR03301 PhnW-AepZ 2-aminoeth 96.8 0.013 2.9E-07 48.4 9.7 86 46-132 257-353 (355)
50 cd00616 AHBA_syn 3-amino-5-hyd 96.8 0.0066 1.4E-07 50.4 7.8 84 46-130 230-351 (352)
51 PRK08153 histidinol-phosphate 96.7 0.015 3.3E-07 49.5 9.8 84 47-135 273-364 (369)
52 TIGR01979 sufS cysteine desulf 96.7 0.016 3.4E-07 49.5 9.5 91 47-138 294-403 (403)
53 PRK04366 glycine dehydrogenase 96.6 0.018 3.8E-07 51.5 9.7 83 48-135 349-447 (481)
54 PRK11522 putrescine--2-oxoglut 96.6 0.011 2.4E-07 52.7 8.3 92 41-134 347-449 (459)
55 TIGR03392 FeS_syn_CsdA cystein 96.6 0.022 4.8E-07 48.7 9.8 88 47-135 292-394 (398)
56 PRK00451 glycine dehydrogenase 96.4 0.023 5.1E-07 49.5 9.4 86 47-133 351-445 (447)
57 KOG1359|consensus 96.4 0.007 1.5E-07 52.5 5.5 65 2-81 316-380 (417)
58 PRK05355 3-phosphoserine/phosp 96.4 0.051 1.1E-06 46.8 10.8 89 46-136 260-358 (360)
59 PRK10534 L-threonine aldolase; 96.3 0.047 1E-06 45.4 9.9 78 48-133 247-330 (333)
60 PRK09295 bifunctional cysteine 96.3 0.023 5E-07 48.8 8.3 86 47-136 300-404 (406)
61 TIGR01366 serC_3 phosphoserine 96.3 0.047 1E-06 46.9 10.1 88 47-135 260-359 (361)
62 TIGR01364 serC_1 phosphoserine 96.3 0.056 1.2E-06 46.4 10.5 88 46-135 249-347 (349)
63 cd00611 PSAT_like Phosphoserin 96.2 0.06 1.3E-06 45.9 10.6 86 46-133 257-353 (355)
64 TIGR03246 arg_catab_astC succi 96.2 0.023 5.1E-07 49.1 7.9 86 45-134 296-393 (397)
65 PRK03244 argD acetylornithine 96.2 0.027 5.9E-07 48.2 8.2 85 46-135 301-393 (398)
66 TIGR00707 argD acetylornithine 96.2 0.032 7E-07 47.0 8.5 82 46-132 288-377 (379)
67 PRK05387 histidinol-phosphate 96.2 0.056 1.2E-06 45.1 9.9 84 46-134 262-351 (353)
68 PLN02721 threonine aldolase 96.2 0.053 1.1E-06 45.0 9.6 83 48-134 258-350 (353)
69 COG2008 GLY1 Threonine aldolas 96.2 0.044 9.5E-07 47.8 9.3 116 6-133 215-340 (342)
70 TIGR01814 kynureninase kynuren 96.1 0.035 7.6E-07 47.8 8.7 85 46-133 307-404 (406)
71 PRK00854 rocD ornithine--oxo-a 96.1 0.035 7.6E-07 47.6 8.4 84 46-133 306-398 (401)
72 PRK02936 argD acetylornithine 96.0 0.036 7.8E-07 47.0 7.8 83 46-132 285-375 (377)
73 PRK07908 hypothetical protein; 95.9 0.074 1.6E-06 44.7 9.5 86 47-138 256-349 (349)
74 PRK08117 4-aminobutyrate amino 95.8 0.027 5.9E-07 49.3 6.5 86 45-134 324-427 (433)
75 TIGR03403 nifS_epsilon cystein 95.8 0.054 1.2E-06 46.0 8.1 112 5-135 262-374 (382)
76 cd06453 SufS_like Cysteine des 95.8 0.059 1.3E-06 45.3 8.3 82 46-127 273-371 (373)
77 cd06452 SepCysS Sep-tRNA:Cys-t 95.7 0.076 1.6E-06 44.8 8.8 95 5-134 264-360 (361)
78 PRK03080 phosphoserine aminotr 95.7 0.14 3E-06 44.1 10.4 88 47-135 271-372 (378)
79 PRK09264 diaminobutyrate--2-ox 95.7 0.084 1.8E-06 46.3 9.2 88 45-134 316-414 (425)
80 TIGR00508 bioA adenosylmethion 95.7 0.043 9.3E-07 48.3 7.4 85 46-135 332-425 (427)
81 PLN02624 ornithine-delta-amino 95.7 0.027 5.8E-07 50.3 6.1 93 45-141 342-449 (474)
82 PRK12381 bifunctional succinyl 95.7 0.028 6E-07 48.8 6.0 86 45-134 300-397 (406)
83 PRK05964 adenosylmethionine--8 95.7 0.058 1.3E-06 47.1 8.1 85 46-135 325-421 (423)
84 TIGR01977 am_tr_V_EF2568 cyste 95.6 0.088 1.9E-06 44.2 8.8 85 47-132 269-375 (376)
85 PLN02414 glycine dehydrogenase 95.6 0.069 1.5E-06 52.3 9.0 83 47-132 381-465 (993)
86 PRK02769 histidine decarboxyla 95.5 0.12 2.6E-06 45.1 9.5 83 44-133 288-370 (380)
87 PRK00062 glutamate-1-semialdeh 95.3 0.062 1.3E-06 47.1 7.1 85 45-135 316-423 (426)
88 TIGR03402 FeS_nifS cysteine de 95.3 0.19 4.1E-06 42.5 9.8 89 47-136 254-372 (379)
89 PRK02731 histidinol-phosphate 95.2 0.19 4.1E-06 42.3 9.3 83 47-134 275-364 (367)
90 TIGR01788 Glu-decarb-GAD gluta 95.0 0.23 5E-06 44.2 9.8 90 44-134 322-427 (431)
91 PRK06209 glutamate-1-semialdeh 94.9 0.1 2.2E-06 46.0 7.3 79 45-134 307-403 (431)
92 cd00609 AAT_like Aspartate ami 94.9 0.25 5.5E-06 40.1 9.2 84 45-131 256-349 (350)
93 TIGR00699 GABAtrns_euk 4-amino 94.8 0.09 1.9E-06 47.3 6.7 84 45-132 366-462 (464)
94 PRK06173 adenosylmethionine--8 94.8 0.11 2.4E-06 46.0 7.2 85 45-134 330-423 (429)
95 PRK05093 argD bifunctional N-s 94.7 0.077 1.7E-06 45.8 5.8 86 45-134 301-398 (403)
96 COG0520 csdA Selenocysteine ly 94.6 0.24 5.3E-06 43.7 9.0 89 46-135 298-404 (405)
97 PRK05367 glycine dehydrogenase 94.6 0.25 5.4E-06 48.3 9.6 82 47-131 353-437 (954)
98 PLN02855 Bifunctional selenocy 94.6 0.32 6.9E-06 42.1 9.4 89 46-135 307-417 (424)
99 PRK04073 rocD ornithine--oxo-a 94.5 0.22 4.7E-06 42.9 8.3 84 46-133 305-394 (396)
100 PRK04260 acetylornithine amino 94.4 0.083 1.8E-06 45.0 5.4 84 45-132 282-373 (375)
101 PTZ00125 ornithine aminotransf 94.4 0.2 4.3E-06 42.7 7.6 86 47-136 298-395 (400)
102 TIGR03251 LAT_fam L-lysine 6-t 94.3 0.22 4.8E-06 43.8 8.1 84 46-132 337-430 (431)
103 PLN03032 serine decarboxylase; 94.3 0.28 6E-06 43.0 8.4 81 44-131 291-371 (374)
104 PLN02409 serine--glyoxylate am 94.3 0.4 8.7E-06 41.5 9.4 92 46-138 271-374 (401)
105 TIGR01141 hisC histidinol-phos 94.3 0.35 7.7E-06 40.2 8.7 77 46-130 259-345 (346)
106 PLN02263 serine decarboxylase 94.1 0.46 1E-05 43.1 9.7 85 44-135 358-442 (470)
107 PRK05769 4-aminobutyrate amino 94.1 0.38 8.2E-06 42.6 9.0 84 48-134 339-437 (441)
108 TIGR03372 putres_am_tran putre 94.1 0.26 5.6E-06 43.9 7.9 86 45-132 344-440 (442)
109 PRK06108 aspartate aminotransf 93.9 0.57 1.2E-05 39.5 9.5 83 47-133 285-379 (382)
110 PRK08297 L-lysine aminotransfe 93.9 0.36 7.7E-06 42.9 8.4 87 45-135 343-440 (443)
111 PLN02590 probable tyrosine dec 93.8 0.32 6.9E-06 44.7 8.1 97 43-140 423-536 (539)
112 TIGR02407 ectoine_ectB diamino 93.6 0.59 1.3E-05 40.9 9.3 89 44-134 311-410 (412)
113 PLN03026 histidinol-phosphate 93.6 0.62 1.4E-05 40.0 9.2 82 47-132 290-378 (380)
114 PRK06541 hypothetical protein; 93.4 0.42 9.1E-06 42.7 8.0 88 45-134 343-453 (460)
115 PRK01278 argD acetylornithine 93.0 0.71 1.5E-05 39.4 8.6 86 46-134 293-386 (389)
116 PRK04612 argD acetylornithine 92.7 0.65 1.4E-05 40.7 8.1 87 44-134 303-401 (408)
117 PLN02760 4-aminobutyrate:pyruv 92.3 0.24 5.1E-06 44.9 5.0 80 44-135 384-490 (504)
118 PRK05664 threonine-phosphate d 92.0 1.7 3.6E-05 36.4 9.5 81 47-136 242-328 (330)
119 PLN02724 Molybdenum cofactor s 91.9 0.72 1.6E-05 44.0 8.0 89 45-134 337-486 (805)
120 PLN02452 phosphoserine transam 91.9 2.2 4.9E-05 37.1 10.4 89 46-136 264-363 (365)
121 PRK13360 omega amino acid--pyr 91.9 0.39 8.4E-06 42.6 5.8 85 45-134 340-438 (442)
122 PRK04635 histidinol-phosphate 91.8 1.8 3.8E-05 36.6 9.5 79 48-131 267-350 (354)
123 PRK01688 histidinol-phosphate 91.8 1.2 2.7E-05 37.6 8.6 80 47-130 265-350 (351)
124 PLN02880 tyrosine decarboxylas 91.7 0.68 1.5E-05 41.8 7.2 88 47-135 379-483 (490)
125 TIGR02006 IscS cysteine desulf 91.7 2.2 4.8E-05 36.6 10.2 29 106-135 348-376 (402)
126 PRK03158 histidinol-phosphate 91.6 2.2 4.7E-05 35.8 9.7 82 47-133 272-358 (359)
127 PRK05764 aspartate aminotransf 91.5 2.6 5.7E-05 35.7 10.3 81 47-135 291-390 (393)
128 PRK08593 4-aminobutyrate amino 91.5 0.7 1.5E-05 41.0 6.9 88 45-135 324-428 (445)
129 PRK13580 serine hydroxymethylt 91.5 0.23 5E-06 45.3 3.9 57 3-71 340-397 (493)
130 PRK09082 methionine aminotrans 91.5 1.3 2.7E-05 37.9 8.3 79 47-127 289-381 (386)
131 PLN02414 glycine dehydrogenase 91.4 0.9 2E-05 44.8 8.1 84 48-134 806-905 (993)
132 TIGR03539 DapC_actino succinyl 91.3 2.3 4.9E-05 35.9 9.6 78 47-127 269-354 (357)
133 PRK00950 histidinol-phosphate 91.1 1.3 2.9E-05 37.0 8.0 78 50-134 272-360 (361)
134 PRK08360 4-aminobutyrate amino 91.0 0.55 1.2E-05 41.7 5.8 87 45-135 321-425 (443)
135 PRK07865 N-succinyldiaminopime 91.0 2.1 4.4E-05 36.2 9.1 80 47-130 275-362 (364)
136 PRK09105 putative aminotransfe 90.9 3.2 6.8E-05 35.5 10.3 83 47-135 282-369 (370)
137 PRK04870 histidinol-phosphate 90.9 2.3 5E-05 35.7 9.3 82 47-133 267-355 (356)
138 PRK07986 adenosylmethionine--8 90.9 1.2 2.5E-05 39.5 7.7 85 45-134 328-421 (428)
139 PRK07681 aspartate aminotransf 90.8 2.2 4.7E-05 36.6 9.2 82 47-132 292-384 (399)
140 PRK06425 histidinol-phosphate 90.5 3.8 8.3E-05 34.2 10.2 80 48-133 243-330 (332)
141 PRK12566 glycine dehydrogenase 90.4 0.74 1.6E-05 45.2 6.5 30 106-136 847-876 (954)
142 PRK02627 acetylornithine amino 90.4 1.7 3.7E-05 36.8 8.1 86 46-135 300-393 (396)
143 TIGR01140 L_thr_O3P_dcar L-thr 90.0 2 4.4E-05 35.9 8.2 77 47-130 244-329 (330)
144 PF00266 Aminotran_5: Aminotra 90.0 1.3 2.8E-05 37.4 7.1 77 47-125 274-371 (371)
145 PLN02482 glutamate-1-semialdeh 90.0 1.3 2.9E-05 39.8 7.4 84 45-134 365-471 (474)
146 TIGR00461 gcvP glycine dehydro 89.9 2.5 5.4E-05 41.6 9.6 81 48-131 342-426 (939)
147 PRK07777 aminotransferase; Val 89.6 4.4 9.5E-05 34.5 10.0 83 47-132 285-382 (387)
148 PRK07682 hypothetical protein; 89.0 4.5 9.7E-05 34.2 9.6 83 47-134 279-374 (378)
149 PRK04781 histidinol-phosphate 89.0 5.1 0.00011 34.0 10.0 84 48-135 273-362 (364)
150 PRK08912 hypothetical protein; 88.6 5 0.00011 34.1 9.7 83 47-132 285-382 (387)
151 TIGR03540 DapC_direct LL-diami 87.7 4.8 0.0001 34.1 9.0 77 47-127 290-378 (383)
152 PRK09221 beta alanine--pyruvat 87.7 1.5 3.3E-05 38.9 6.1 85 45-134 343-441 (445)
153 TIGR03537 DapC succinyldiamino 87.7 3.6 7.8E-05 34.5 8.2 80 47-131 258-348 (350)
154 PRK08175 aminotransferase; Val 87.7 7.2 0.00016 33.4 10.1 83 47-134 290-387 (395)
155 PRK06290 aspartate aminotransf 87.2 4.2 9.2E-05 35.4 8.5 85 47-133 303-402 (410)
156 PRK05630 adenosylmethionine--8 87.2 3.2 7E-05 36.6 7.8 85 45-134 325-418 (422)
157 PLN00175 aminotransferase fami 87.1 7 0.00015 34.0 9.9 84 47-133 312-410 (413)
158 PRK05639 4-aminobutyrate amino 87.1 4.6 0.0001 36.1 8.8 89 44-134 337-441 (457)
159 PRK08056 threonine-phosphate d 86.9 10 0.00022 32.0 10.5 83 47-136 263-355 (356)
160 PRK14012 cysteine desulfurase; 86.6 8.3 0.00018 33.1 9.9 30 106-136 350-379 (404)
161 PRK08068 transaminase; Reviewe 86.4 6.1 0.00013 33.7 8.9 78 47-127 293-381 (389)
162 PRK06225 aspartate aminotransf 86.3 13 0.00028 31.5 10.8 86 47-135 277-375 (380)
163 PLN02483 serine palmitoyltrans 86.2 0.51 1.1E-05 42.4 2.3 33 3-35 370-402 (489)
164 PRK03317 histidinol-phosphate 86.1 7.4 0.00016 32.8 9.2 81 47-135 278-363 (368)
165 PRK06959 putative threonine-ph 86.0 8 0.00017 32.6 9.4 80 47-136 248-333 (339)
166 cd00614 CGS_like CGS_like: Cys 85.5 6.8 0.00015 33.5 8.8 50 45-94 235-303 (369)
167 PRK12389 glutamate-1-semialdeh 85.5 5.7 0.00012 34.9 8.5 84 45-134 319-425 (428)
168 PRK09276 LL-diaminopimelate am 85.2 7.3 0.00016 33.0 8.8 79 47-127 292-380 (385)
169 PRK03321 putative aminotransfe 84.7 13 0.00027 31.1 9.9 80 47-135 266-350 (352)
170 PRK14807 histidinol-phosphate 83.8 11 0.00024 31.7 9.2 81 47-132 262-348 (351)
171 PRK15481 transcriptional regul 83.7 15 0.00033 31.8 10.3 84 47-133 336-428 (431)
172 PRK05367 glycine dehydrogenase 83.4 6.3 0.00014 38.8 8.5 29 106-135 846-874 (954)
173 PRK06058 4-aminobutyrate amino 83.2 8 0.00017 34.2 8.5 89 45-135 336-441 (443)
174 COG1104 NifS Cysteine sulfinat 83.2 6.1 0.00013 35.2 7.6 110 7-135 265-376 (386)
175 PRK05166 histidinol-phosphate 83.1 17 0.00038 30.7 10.2 82 47-134 282-369 (371)
176 COG0156 BioF 7-keto-8-aminopel 83.0 2.1 4.5E-05 37.9 4.7 55 3-71 295-349 (388)
177 TIGR03576 pyridox_MJ0158 pyrid 82.1 8.1 0.00018 33.1 7.9 81 46-132 252-343 (346)
178 PRK14808 histidinol-phosphate 82.0 7.5 0.00016 32.7 7.5 76 47-132 252-333 (335)
179 PRK07309 aromatic amino acid a 81.6 17 0.00037 31.0 9.7 86 47-136 290-388 (391)
180 PRK08088 4-aminobutyrate amino 80.4 10 0.00022 33.1 8.0 93 41-135 312-422 (425)
181 PLN02651 cysteine desulfurase 80.2 8.1 0.00018 32.6 7.2 78 46-123 257-364 (364)
182 PRK07683 aminotransferase A; V 80.1 18 0.0004 30.8 9.4 81 47-133 286-380 (387)
183 TIGR02539 SepCysS Sep-tRNA:Cys 79.5 13 0.00028 31.6 8.3 62 6-70 272-333 (370)
184 PRK01533 histidinol-phosphate 78.7 20 0.00043 30.6 9.2 81 47-137 272-356 (366)
185 PLN02955 8-amino-7-oxononanoat 78.5 2.1 4.5E-05 39.0 3.2 57 4-81 373-429 (476)
186 PF02347 GDC-P: Glycine cleava 78.5 8.9 0.00019 34.6 7.1 78 47-127 344-427 (429)
187 TIGR00713 hemL glutamate-1-sem 78.2 10 0.00023 32.7 7.4 83 46-134 315-420 (423)
188 TIGR00461 gcvP glycine dehydro 77.2 18 0.00039 35.8 9.3 83 50-134 768-865 (939)
189 PRK13238 tnaA tryptophanase/L- 74.3 19 0.00042 32.2 8.1 87 47-134 315-431 (460)
190 COG0075 Serine-pyruvate aminot 74.1 28 0.00061 31.0 9.0 91 47-138 264-365 (383)
191 TIGR01365 serC_2 phosphoserine 73.6 30 0.00064 30.3 9.0 88 47-135 262-372 (374)
192 TIGR01437 selA_rel uncharacter 73.1 19 0.00041 30.9 7.5 85 46-133 261-362 (363)
193 PRK07590 L,L-diaminopimelate a 72.4 35 0.00075 29.4 9.1 81 47-130 315-405 (409)
194 PRK13034 serine hydroxymethylt 71.8 3.5 7.5E-05 36.1 2.8 32 4-35 288-320 (416)
195 COG0079 HisC Histidinol-phosph 71.2 55 0.0012 28.4 10.0 87 45-136 260-354 (356)
196 PRK05942 aspartate aminotransf 71.1 30 0.00064 29.6 8.3 83 47-136 296-389 (394)
197 TIGR03235 DNA_S_dndA cysteine 70.8 6.6 0.00014 32.8 4.2 27 4-30 263-289 (353)
198 PRK06917 hypothetical protein; 69.5 30 0.00064 30.8 8.2 89 45-134 322-435 (447)
199 PLN02242 methionine gamma-lyas 69.5 15 0.00033 32.4 6.3 78 45-122 275-377 (418)
200 PRK06149 hypothetical protein; 68.6 17 0.00037 35.6 7.0 83 45-135 863-969 (972)
201 PRK12414 putative aminotransfe 68.4 47 0.001 28.3 9.0 78 47-127 287-379 (384)
202 PRK07366 succinyldiaminopimela 68.4 59 0.0013 27.5 9.5 80 47-131 292-385 (388)
203 PRK07550 hypothetical protein; 68.2 45 0.00098 28.2 8.8 80 48-132 290-383 (386)
204 PLN00144 acetylornithine trans 67.5 46 0.00099 28.7 8.8 88 45-135 284-379 (382)
205 PRK06082 4-aminobutyrate amino 67.4 38 0.00082 30.3 8.4 86 45-134 346-449 (459)
206 TIGR03542 DAPAT_plant LL-diami 66.8 57 0.0012 27.9 9.2 78 48-127 309-396 (402)
207 TIGR00709 dat 2,4-diaminobutyr 66.6 43 0.00092 29.6 8.6 88 45-134 322-433 (442)
208 PRK09792 4-aminobutyrate trans 66.1 61 0.0013 28.4 9.4 87 46-134 316-419 (421)
209 COG0403 GcvP Glycine cleavage 64.8 45 0.00097 30.4 8.3 85 47-133 358-447 (450)
210 PRK07582 cystathionine gamma-l 64.8 55 0.0012 28.1 8.7 87 45-132 242-365 (366)
211 PRK08361 aspartate aminotransf 64.2 76 0.0016 27.0 9.4 81 47-132 292-386 (391)
212 PRK06358 threonine-phosphate d 64.2 87 0.0019 26.3 9.9 80 47-133 264-352 (354)
213 PRK07046 aminotransferase; Val 64.1 39 0.00084 30.2 7.8 83 45-134 342-448 (453)
214 PRK06931 diaminobutyrate--2-ox 63.3 56 0.0012 29.2 8.7 88 45-134 341-452 (459)
215 TIGR03812 tyr_de_CO2_Arch tyro 63.1 11 0.00023 31.5 3.9 24 3-26 289-312 (373)
216 PTZ00094 serine hydroxymethylt 63.1 16 0.00034 32.3 5.1 26 4-29 305-330 (452)
217 PRK06918 4-aminobutyrate amino 62.9 49 0.0011 29.2 8.2 87 46-134 337-441 (451)
218 PF00464 SHMT: Serine hydroxym 62.9 33 0.0007 30.6 7.1 83 45-127 297-397 (399)
219 PRK07337 aminotransferase; Val 62.8 90 0.0019 26.4 9.6 78 47-127 286-381 (388)
220 TIGR01264 tyr_amTase_E tyrosin 62.3 99 0.0021 26.3 9.9 85 47-134 299-397 (401)
221 PRK08363 alanine aminotransfer 61.6 84 0.0018 26.8 9.3 82 47-134 295-392 (398)
222 COG0112 GlyA Glycine/serine hy 61.2 78 0.0017 28.6 9.0 92 45-138 281-392 (413)
223 TIGR03588 PseC UDP-4-keto-6-de 61.2 86 0.0019 26.6 9.2 87 46-133 257-379 (380)
224 TIGR01265 tyr_nico_aTase tyros 61.2 1.1E+02 0.0023 26.3 10.0 84 47-133 301-398 (403)
225 TIGR03538 DapC_gpp succinyldia 60.9 1E+02 0.0023 26.1 9.7 81 47-131 296-390 (393)
226 PRK00011 glyA serine hydroxyme 60.3 17 0.00038 31.1 4.8 25 3-27 284-308 (416)
227 PTZ00376 aspartate aminotransf 60.2 1E+02 0.0023 26.4 9.6 77 49-135 319-402 (404)
228 PRK09148 aminotransferase; Val 59.6 90 0.002 26.8 9.2 81 47-132 291-386 (405)
229 COG0001 HemL Glutamate-1-semia 59.6 44 0.00096 30.3 7.3 82 49-136 324-428 (432)
230 PRK06107 aspartate aminotransf 59.5 94 0.002 26.6 9.2 82 47-133 294-397 (402)
231 PRK08064 cystathionine beta-ly 59.1 63 0.0014 28.0 8.1 87 46-133 249-383 (390)
232 TIGR03799 NOD_PanD_pyr putativ 58.9 74 0.0016 29.2 8.8 44 41-84 393-437 (522)
233 KOG1368|consensus 58.0 46 0.00099 29.4 6.9 118 6-135 240-368 (384)
234 PLN03226 serine hydroxymethylt 57.4 18 0.00039 32.6 4.6 26 3-28 315-340 (475)
235 PRK06348 aspartate aminotransf 56.5 1.1E+02 0.0024 25.9 9.1 79 47-131 287-380 (384)
236 PRK12566 glycine dehydrogenase 55.1 88 0.0019 31.2 9.1 81 48-131 356-439 (954)
237 PRK06938 diaminobutyrate--2-ox 54.5 1E+02 0.0022 27.6 8.8 88 45-134 347-458 (464)
238 PRK06777 4-aminobutyrate amino 54.3 92 0.002 27.3 8.4 87 45-133 315-418 (421)
239 PRK06148 hypothetical protein; 54.2 68 0.0015 31.8 8.2 89 44-134 902-1008(1013)
240 PRK13237 tyrosine phenol-lyase 54.1 64 0.0014 29.4 7.5 112 22-135 290-432 (460)
241 PF02026 RyR: RyR domain; Int 53.4 78 0.0017 22.4 6.6 65 2-71 20-90 (94)
242 PRK08960 hypothetical protein; 53.2 1.4E+02 0.003 25.3 9.3 78 47-127 288-379 (387)
243 cd00617 Tnase_like Tryptophana 53.0 1.4E+02 0.0031 26.6 9.5 85 50-135 293-407 (431)
244 PRK08636 aspartate aminotransf 52.8 1.5E+02 0.0032 25.4 10.2 82 48-134 302-398 (403)
245 PRK14809 histidinol-phosphate 52.8 1.4E+02 0.0029 25.0 9.1 76 49-133 274-354 (357)
246 PRK06916 adenosylmethionine--8 51.9 73 0.0016 28.4 7.5 83 45-134 349-453 (460)
247 PRK06836 aspartate aminotransf 51.5 1.5E+02 0.0033 25.2 9.8 80 48-134 300-389 (394)
248 PRK07179 hypothetical protein; 51.2 13 0.00028 31.9 2.5 53 3-70 304-356 (407)
249 COG2833 Uncharacterized protei 50.8 16 0.00035 30.8 2.9 60 4-71 113-175 (268)
250 PRK07482 hypothetical protein; 50.8 85 0.0018 28.0 7.7 87 45-134 345-452 (461)
251 PLN02822 serine palmitoyltrans 49.6 13 0.00027 33.4 2.3 33 3-35 369-402 (481)
252 cd06451 AGAT_like Alanine-glyo 49.2 42 0.00092 27.8 5.3 26 3-28 260-285 (356)
253 PRK06062 hypothetical protein; 48.9 22 0.00049 31.6 3.8 28 107-135 417-444 (451)
254 PRK07324 transaminase; Validat 48.9 1.7E+02 0.0036 24.9 9.1 81 47-134 275-368 (373)
255 TIGR01976 am_tr_V_VC1184 cyste 48.6 33 0.00072 28.9 4.6 24 5-28 297-321 (397)
256 PLN02672 methionine S-methyltr 48.4 1.5E+02 0.0032 30.0 9.6 84 48-135 970-1079(1082)
257 PRK12462 phosphoserine aminotr 48.1 1.9E+02 0.0042 25.4 9.8 85 47-136 264-362 (364)
258 COG1103 Archaea-specific pyrid 47.7 46 0.001 29.1 5.3 96 5-136 282-380 (382)
259 PLN02271 serine hydroxymethylt 47.2 72 0.0016 30.1 6.8 92 43-135 430-539 (586)
260 COG0436 Aspartate/tyrosine/aro 46.8 1.4E+02 0.0031 26.0 8.4 86 47-135 292-390 (393)
261 TIGR02618 tyr_phenol_ly tyrosi 46.4 1.9E+02 0.0042 26.3 9.3 113 21-135 282-425 (450)
262 KOG2848|consensus 46.3 53 0.0012 28.0 5.4 50 75-134 194-252 (276)
263 COG4992 ArgD Ornithine/acetylo 45.3 80 0.0017 28.4 6.6 91 41-135 297-397 (404)
264 PRK00745 4-oxalocrotonate taut 45.2 61 0.0013 20.2 4.5 32 107-138 2-33 (62)
265 PRK06767 methionine gamma-lyas 45.1 2E+02 0.0044 24.7 9.1 83 45-127 256-381 (386)
266 PRK06855 aminotransferase; Val 44.2 1.9E+02 0.0042 25.2 8.9 25 108-134 403-427 (433)
267 PLN02397 aspartate transaminas 43.5 2.2E+02 0.0048 24.8 9.4 76 47-134 335-419 (423)
268 PLN02450 1-aminocyclopropane-1 43.2 2.4E+02 0.0052 25.1 9.8 86 47-135 327-429 (468)
269 PRK09257 aromatic amino acid a 42.8 2.1E+02 0.0046 24.3 8.9 74 48-132 313-394 (396)
270 COG0075 Serine-pyruvate aminot 42.6 54 0.0012 29.2 5.1 32 4-36 267-298 (383)
271 KOG1383|consensus 42.0 1.2E+02 0.0025 28.1 7.1 75 44-127 350-438 (491)
272 PRK00489 hisG ATP phosphoribos 42.0 1.1E+02 0.0025 25.3 6.8 91 45-145 191-281 (287)
273 PF04305 DUF455: Protein of un 41.8 25 0.00054 29.5 2.7 61 3-71 104-167 (253)
274 PRK02948 cysteine desulfurase; 41.8 40 0.00087 28.4 4.1 25 3-27 258-282 (381)
275 PF05773 RWD: RWD domain; Int 41.7 34 0.00073 23.5 3.1 46 95-144 57-105 (113)
276 PRK01964 4-oxalocrotonate taut 40.8 78 0.0017 20.0 4.5 32 107-138 2-33 (64)
277 TIGR00700 GABAtrnsam 4-aminobu 40.7 2.4E+02 0.0051 24.6 8.8 87 45-133 314-417 (420)
278 cd00616 AHBA_syn 3-amino-5-hyd 40.5 27 0.00058 28.7 2.8 26 3-28 233-259 (352)
279 PRK13479 2-aminoethylphosphona 40.0 51 0.0011 27.6 4.4 25 3-27 266-290 (368)
280 PLN03227 serine palmitoyltrans 39.2 57 0.0012 28.2 4.7 22 3-24 263-284 (392)
281 TIGR02326 transamin_PhnW 2-ami 39.1 56 0.0012 27.3 4.5 25 4-28 266-290 (363)
282 PRK02289 4-oxalocrotonate taut 38.9 92 0.002 19.6 4.6 33 107-139 2-34 (60)
283 PRK10534 L-threonine aldolase; 38.6 78 0.0017 26.0 5.3 54 3-71 248-301 (333)
284 PRK06105 aminotransferase; Pro 38.6 1.4E+02 0.003 26.7 7.1 86 44-134 342-447 (460)
285 PRK07036 hypothetical protein; 37.8 1.6E+02 0.0034 26.4 7.4 85 45-134 346-450 (466)
286 PRK02220 4-oxalocrotonate taut 36.9 96 0.0021 19.2 4.4 32 107-138 2-33 (61)
287 cd00378 SHMT Serine-glycine hy 36.8 41 0.00088 28.5 3.4 24 3-26 280-303 (402)
288 PF02120 Flg_hook: Flagellar h 36.7 48 0.001 22.0 3.1 24 3-26 49-72 (85)
289 PRK09064 5-aminolevulinate syn 36.1 31 0.00067 29.5 2.5 24 4-27 302-325 (407)
290 COG1003 GcvP Glycine cleavage 35.9 1.8E+02 0.004 26.8 7.4 79 52-134 349-445 (496)
291 TIGR00013 taut 4-oxalocrotonat 35.8 1.1E+02 0.0024 19.0 4.6 32 108-139 2-34 (63)
292 cd00491 4Oxalocrotonate_Tautom 35.6 1E+02 0.0022 18.7 4.5 32 108-139 2-33 (58)
293 COG0439 AccC Biotin carboxylas 34.9 3.5E+02 0.0076 24.6 11.2 102 12-140 89-195 (449)
294 PLN03032 serine decarboxylase; 34.6 48 0.001 29.0 3.5 27 2-28 295-321 (374)
295 TIGR03301 PhnW-AepZ 2-aminoeth 34.4 82 0.0018 25.7 4.7 26 3-28 260-285 (355)
296 PRK07568 aspartate aminotransf 34.4 2.8E+02 0.0061 23.3 10.0 85 47-134 288-390 (397)
297 PRK13520 L-tyrosine decarboxyl 34.1 70 0.0015 26.5 4.3 23 3-25 284-306 (371)
298 KOG0461|consensus 33.7 78 0.0017 28.7 4.6 38 46-87 137-174 (522)
299 PRK09331 Sep-tRNA:Cys-tRNA syn 33.7 76 0.0016 27.1 4.6 38 47-84 279-319 (387)
300 PTZ00377 alanine aminotransfer 33.4 3.4E+02 0.0074 24.0 9.4 27 105-134 447-473 (481)
301 PLN02409 serine--glyoxylate am 33.0 91 0.002 26.9 5.0 25 4-28 275-299 (401)
302 PRK09440 avtA valine--pyruvate 32.3 2.7E+02 0.0059 23.7 7.8 25 107-134 385-409 (416)
303 TIGR01328 met_gam_lyase methio 31.8 3.2E+02 0.007 23.6 8.2 38 31-68 239-278 (391)
304 PLN02390 molybdopterin synthas 31.7 1.7E+02 0.0036 21.4 5.5 46 101-149 63-108 (111)
305 COG0076 GadB Glutamate decarbo 31.7 71 0.0015 28.8 4.2 44 43-86 337-381 (460)
306 PRK02769 histidine decarboxyla 31.3 51 0.0011 28.7 3.1 27 2-28 292-318 (380)
307 PRK02610 histidinol-phosphate 30.8 3.3E+02 0.0071 23.0 8.8 28 106-137 345-372 (374)
308 PTZ00433 tyrosine aminotransfe 30.7 3.5E+02 0.0075 23.2 9.5 85 47-135 308-407 (412)
309 PRK09147 succinyldiaminopimela 30.5 3.4E+02 0.0073 23.0 9.5 82 47-132 297-392 (396)
310 cd06502 TA_like Low-specificit 30.2 47 0.001 27.1 2.6 23 3-25 249-271 (338)
311 cd06450 DOPA_deC_like DOPA dec 29.3 63 0.0014 26.5 3.2 26 3-28 249-275 (345)
312 PRK08637 hypothetical protein; 29.0 3.6E+02 0.0078 22.9 9.1 28 105-134 357-384 (388)
313 KOG0629|consensus 28.5 3E+02 0.0064 25.5 7.5 25 45-69 391-415 (510)
314 PRK06207 aspartate aminotransf 28.5 3.8E+02 0.0083 23.0 8.8 84 47-133 304-399 (405)
315 PF13876 Phage_gp49_66: Phage 28.2 66 0.0014 22.4 2.7 39 20-61 34-76 (81)
316 PRK07504 O-succinylhomoserine 27.9 4E+02 0.0087 23.1 9.3 99 33-132 246-395 (398)
317 KOG1549|consensus 27.3 98 0.0021 28.1 4.2 32 104-135 387-418 (428)
318 PF15059 Speriolin_C: Sperioli 27.2 1.1E+02 0.0023 23.9 3.9 53 14-71 18-74 (146)
319 cd06454 KBL_like KBL_like; thi 26.8 65 0.0014 26.3 2.9 25 4-28 256-280 (349)
320 PLN02187 rooty/superroot1 26.8 4.5E+02 0.0098 23.3 10.1 84 47-133 337-435 (462)
321 PRK13689 hypothetical protein; 26.6 73 0.0016 22.1 2.6 32 113-144 3-34 (75)
322 PRK05957 aspartate aminotransf 26.4 4E+02 0.0087 22.6 9.5 80 47-131 286-380 (389)
323 PRK07495 4-aminobutyrate amino 26.2 4.5E+02 0.0098 23.1 8.9 89 45-135 315-420 (425)
324 TIGR03235 DNA_S_dndA cysteine 25.8 1.3E+02 0.0027 25.0 4.5 39 47-85 260-301 (353)
325 TIGR01822 2am3keto_CoA 2-amino 25.6 61 0.0013 27.3 2.6 25 3-27 294-318 (393)
326 PRK05387 histidinol-phosphate 25.2 1.4E+02 0.0029 24.7 4.6 24 3-26 265-288 (353)
327 PF08901 DUF1847: Protein of u 24.7 83 0.0018 24.7 2.9 22 6-27 65-86 (157)
328 PF11814 DUF3335: Peptidase_C3 24.4 2.1E+02 0.0046 23.4 5.4 50 18-71 63-112 (207)
329 COG0161 BioA Adenosylmethionin 24.3 2.1E+02 0.0046 26.1 5.9 102 20-133 315-440 (449)
330 PLN02376 1-aminocyclopropane-1 24.2 5.3E+02 0.011 23.2 9.5 79 50-134 337-436 (496)
331 PRK09265 aminotransferase AlaT 24.2 4.5E+02 0.0097 22.4 9.5 80 51-135 304-400 (404)
332 PRK08354 putative aminotransfe 23.8 4.1E+02 0.0088 21.7 8.3 23 107-133 287-309 (311)
333 TIGR03455 HisG_C-term ATP phos 23.5 2.8E+02 0.0061 19.7 7.4 89 48-146 8-96 (100)
334 cd00756 MoaE MoaE family. Memb 23.3 2.8E+02 0.006 20.5 5.5 46 101-149 74-119 (124)
335 PF11950 DUF3467: Protein of u 23.2 1E+02 0.0022 21.6 3.0 39 100-139 51-89 (92)
336 COG3033 TnaA Tryptophanase [Am 23.2 5.2E+02 0.011 23.6 7.9 88 45-137 325-445 (471)
337 PRK11706 TDP-4-oxo-6-deoxy-D-g 23.2 4.6E+02 0.01 22.2 8.0 87 46-133 249-373 (375)
338 TIGR01821 5aminolev_synth 5-am 23.1 72 0.0016 27.2 2.6 24 4-27 301-324 (402)
339 PF04244 DPRP: Deoxyribodipyri 22.2 1E+02 0.0022 25.2 3.2 25 2-26 42-66 (224)
340 PHA01971 hypothetical protein 21.9 96 0.0021 23.5 2.7 40 20-62 74-117 (123)
341 PLN02607 1-aminocyclopropane-1 21.7 5.7E+02 0.012 22.6 9.6 83 47-133 334-434 (447)
342 PRK13392 5-aminolevulinate syn 21.4 81 0.0018 27.0 2.5 23 4-26 302-324 (410)
343 PRK13393 5-aminolevulinate syn 21.0 1.6E+02 0.0036 25.1 4.4 21 5-25 302-322 (406)
344 KOG3307|consensus 20.7 1.8E+02 0.0039 22.3 4.0 36 98-134 86-121 (150)
345 PRK06943 adenosylmethionine--8 20.7 1.2E+02 0.0027 26.9 3.6 85 45-134 346-444 (453)
346 PRK07392 threonine-phosphate d 20.6 5E+02 0.011 21.6 10.4 80 49-134 268-357 (360)
347 PF09825 BPL_N: Biotin-protein 20.4 1.9E+02 0.0041 25.6 4.7 53 10-65 244-296 (367)
348 PRK03967 histidinol-phosphate 20.2 5.1E+02 0.011 21.5 8.2 77 49-138 256-336 (337)
349 PF00155 Aminotran_1_2: Aminot 20.0 1.2E+02 0.0027 24.9 3.3 26 3-28 277-302 (363)
No 1
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=99.84 E-value=1.3e-20 Score=164.36 Aligned_cols=114 Identities=19% Similarity=0.266 Sum_probs=97.8
Q ss_pred HHHHHHhhhcccEEeecCCCCCCCCcccc----c-ccccchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCC
Q psy5049 12 RYFRRKLNRLGLILYVLFQAQTKPPRSHC----I-CFISGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFF 86 (153)
Q Consensus 12 ~~~~~~l~~~g~~~~~~~~~~~~p~~~~~----l-~~~~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~ 86 (153)
.|+|++ ..+|+ ||.++||..+.. + ..++++++|++|++++.+|++.++..|+.+ ..+.|||+||++|+
T Consensus 259 d~L~~~--ar~~i----fStalpP~~aaa~~~al~~l~~~~~~r~~L~~~~~~~~~~~~~~~~~~-~~s~s~I~pv~~gd 331 (388)
T COG0156 259 DYLRNR--ARPFI----FSTALPPAVAAAALAALRILEEGPERRERLQELAAFFRSLLKALGLVL-LPSESPIIPVILGD 331 (388)
T ss_pred HHHHHh--CCcee----ccCCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCcc-CCCCCCeeeeEeCC
Confidence 345544 57888 999999975433 2 234789999999999999999999999987 46889999999999
Q ss_pred chHHHhcc----------ccccCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHH
Q psy5049 87 FSKVGQTS----------IGLGVEQTALNDGLSLYESSHLRSANLWNRPHSPSLMAV 133 (153)
Q Consensus 87 ~~~~~~~a----------~~i~~PtVP~g~~RlRI~lsA~HT~edId~L~~~~L~~~ 133 (153)
++++.+++ .+|+|||||+|++|+|+|+||.||++||+++++ ++..+
T Consensus 332 ~~~a~~~s~~l~~~Gi~v~~i~~PTVp~gtarlRi~lta~ht~~~I~~l~~-~l~~~ 387 (388)
T COG0156 332 EERALEASRALLEEGIYVSAIRPPTVPKGTARLRITLTAAHTEEDIDRLAE-ALSEV 387 (388)
T ss_pred HHHHHHHHHHHHHCCeeEeeecCCCCCCCcceEEEEecCCCCHHHHHHHHH-HHHhh
Confidence 99888876 889999999999999999999999999999998 77654
No 2
>PLN02955 8-amino-7-oxononanoate synthase
Probab=99.73 E-value=1.2e-17 Score=149.01 Aligned_cols=110 Identities=13% Similarity=0.100 Sum_probs=90.2
Q ss_pred hcccEEeecCCCCCCCCcccc-----cccccchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc
Q psy5049 20 RLGLILYVLFQAQTKPPRSHC-----ICFISGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS 94 (153)
Q Consensus 20 ~~g~~~~~~~~~~~~p~~~~~-----l~~~~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a 94 (153)
..+|+ ||+.+||..+.+ .....++++|++|++|++||++. .|+++ .|||+||++|++.++..++
T Consensus 342 ~~~~i----fStalpp~~aaa~laal~l~~~~~~~r~~L~~n~~~fr~~---~G~~~----~sPI~pI~ig~~~~a~~~~ 410 (476)
T PLN02955 342 GRSFI----FSTAIPVPMAAAAYAAVVVARKEKWRRKAIWERVKEFKAL---SGVDI----SSPIISLVVGNQEKALKAS 410 (476)
T ss_pred CCCCe----ecccccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh---cCCCC----CCCEEEEEeCCHHHHHHHH
Confidence 45676 777888864433 22235678999999999999994 47754 3899999999999888765
Q ss_pred ----------ccccCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHhcCCCce
Q psy5049 95 ----------IGLGVEQTALNDGLSLYESSHLRSANLWNRPHSPSLMAVFRGGGPGI 141 (153)
Q Consensus 95 ----------~~i~~PtVP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~~~~~~~ 141 (153)
.+|+||+||+|++|+||++||.||+|||+++++ +|..+....+..+
T Consensus 411 ~~L~~~Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~edId~lv~-~L~~~~~~~~~~~ 466 (476)
T PLN02955 411 RYLLKSGFHVMAIRPPTVPPNSCRLRVTLSAAHTTEDVKKLIT-ALSSCLDFDNTAT 466 (476)
T ss_pred HHHHHCCCEEEEECCCCCCCCCceEEEeeCCCCCHHHHHHHHH-HHHHHHhhhccee
Confidence 888999999999999999999999999999999 8888877655544
No 3
>KOG1359|consensus
Probab=99.68 E-value=1.5e-16 Score=135.38 Aligned_cols=106 Identities=17% Similarity=0.182 Sum_probs=87.6
Q ss_pred CCCCCCCCcccc----ccc-ccchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc---------
Q psy5049 29 FQAQTKPPRSHC----ICF-ISGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS--------- 94 (153)
Q Consensus 29 ~~~~~~p~~~~~----l~~-~~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a--------- 94 (153)
||-++||-.--+ +.. .......++.+.|+.+|++.+...||++.+ ..+||+||++||.+.+.+++
T Consensus 292 FSnslppavV~~a~ka~dllm~s~~~i~~~~a~~qrfr~~me~aGftIsg-~~hPI~pv~lGda~lA~~~ad~lLk~Gi~ 370 (417)
T KOG1359|consen 292 FSNSLPPAVVGMAAKAYDLLMVSSKEIQSRQANTQRFREFMEAAGFTISG-ASHPICPVMLGDARLASKMADELLKRGIY 370 (417)
T ss_pred ecCCCChhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCceecC-CCCCccceecccHHHHHHHHHHHHhcCce
Confidence 899999842111 111 134567788899999999999999999865 55899999999999988887
Q ss_pred -ccccCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Q psy5049 95 -IGLGVEQTALNDGLSLYESSHLRSANLWNRPHSPSLMAVFRG 136 (153)
Q Consensus 95 -~~i~~PtVP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~~ 136 (153)
.+++||+||+|.+|+|+.+||.||+||||++++ ++..+.+.
T Consensus 371 Vigfs~PvVP~gkariRVqiSAaHt~edid~~i~-Af~~vgr~ 412 (417)
T KOG1359|consen 371 VIGFSYPVVPKGKARIRVQISAAHTEEDIDRLIE-AFSEVGRF 412 (417)
T ss_pred EEeecCCcCCCCceEEEEEEehhcCHHHHHHHHH-HHHHHHHh
Confidence 788999999999999999999999999999998 77666554
No 4
>KOG1360|consensus
Probab=99.63 E-value=1.4e-15 Score=133.48 Aligned_cols=119 Identities=18% Similarity=0.112 Sum_probs=101.3
Q ss_pred hcccEEeecCCCCCCCCcccc-------cccccchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHh
Q psy5049 20 RLGLILYVLFQAQTKPPRSHC-------ICFISGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQ 92 (153)
Q Consensus 20 ~~g~~~~~~~~~~~~p~~~~~-------l~~~~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~ 92 (153)
-.||+ |--++||-.++= +.+.++..+|..-+.|+.|+++.|.+.|+.++ ..+|+||||.+||..++.+
T Consensus 396 AaGFI----FTTSLPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~~GiPVi-~~pSHIiPv~vgda~l~~~ 470 (570)
T KOG1360|consen 396 AAGFI----FTTSLPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLMELGIPVI-PNPSHIIPVRVGDAALAKQ 470 (570)
T ss_pred cCceE----EecCCChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHcCCccc-CCCcceeeeeccCHHHHHH
Confidence 46999 888999975543 66778899999999999999999999999986 5779999999999987777
Q ss_pred cc-----------ccccCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHhcCCCceee
Q psy5049 93 TS-----------IGLGVEQTALNDGLSLYESSHLRSANLWNRPHSPSLMAVFRGGGPGIFP 143 (153)
Q Consensus 93 ~a-----------~~i~~PtVP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~~~~~~~~~ 143 (153)
++ .+|.|||||.|++||||+.+..||++.++.++++++..|.+++-|-+-+
T Consensus 471 ~sd~Li~~h~iYvQaINyPTV~rG~E~LRiaPTP~HT~~mm~~lv~~l~~vw~~v~l~~~~~ 532 (570)
T KOG1360|consen 471 ASDILISKHNIYVQAINYPTVARGTERLRIAPTPHHTPQMMNILVNALLDVWNEVGLPRVRD 532 (570)
T ss_pred HHHHHHHhcCeEEEeccCCcccccceeeecCCCCCCCHHHHHHHHHHHHHHHHHcCCcccCC
Confidence 65 8899999999999999999999999999999994555555655554433
No 5
>KOG1357|consensus
Probab=99.48 E-value=1.4e-14 Score=128.00 Aligned_cols=107 Identities=32% Similarity=0.480 Sum_probs=91.5
Q ss_pred ecCCCCCCCCcccc-------c----ccccchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc-
Q psy5049 27 VLFQAQTKPPRSHC-------I----CFISGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS- 94 (153)
Q Consensus 27 ~~~~~~~~p~~~~~-------l----~~~~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a- 94 (153)
..+.++++|+++.. + .+..+.++.++|.+|++|||..|+.+||.++|+.+|||+|+++..+.+...++
T Consensus 373 ~~yat~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~~gfivyG~~dSpVvplll~~~~k~~~f~r 452 (519)
T KOG1357|consen 373 ALYATSLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQKMGFIVYGNNDSPVVPLLLYGPAKIVAFSR 452 (519)
T ss_pred eeecccCChHHHHHHHHHHHhhcCCCcccHHHHHHHHHHhhhHHHHHhhhcCcEEEecCCCCCcceeeecCcccccHHHH
Confidence 35777888886654 1 12356889999999999999999999999999999999999999998888876
Q ss_pred ---------ccccCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049 95 ---------IGLGVEQTALNDGLSLYESSHLRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 95 ---------~~i~~PtVP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~ 134 (153)
.++.||++|.-++|.|+|+||.||+||+|++++ +++.+.
T Consensus 453 ~~l~~nigvVvvgfPatpl~e~r~R~c~Sa~ht~e~ld~~l~-~i~~~g 500 (519)
T KOG1357|consen 453 EMLERNIGVVVVGFPATPLLESRARFCLSASHTKEDLDRALE-VIDRVG 500 (519)
T ss_pred HHHhcCceEEEEeCCCchHHHhHHHhhhcccccHHHHHHHHH-HHhhhc
Confidence 666999999999999999999999999999777 555544
No 6
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=99.41 E-value=8.9e-13 Score=118.31 Aligned_cols=107 Identities=10% Similarity=0.015 Sum_probs=84.2
Q ss_pred cCCCCCCCCcccc------cccccchHHHHHHHHHHHHHHHHHHhCCCccc-CCCCCCeEEEEcCCchHHH-hcc-----
Q psy5049 28 LFQAQTKPPRSHC------ICFISGIRRISVLAHNTRYFRRKLNRLGLIVY-GHRDSPVVPVLVFFFSKVG-QTS----- 94 (153)
Q Consensus 28 ~~~~~~~p~~~~~------l~~~~~~~rr~~L~~ni~~fr~~L~~~G~~~~-~~s~SPIiPV~~g~~~~~~-~~a----- 94 (153)
.|+.+++|..+.. +...++++++++|++|+++|++.|.+.||.+. +.++||||||.+++...+. .++
T Consensus 313 i~gg~l~p~iAA~avAl~e~~~~ef~~y~~~l~~Na~~La~~L~~~G~~vv~ggTdshIV~V~lg~~~~~g~~a~~~L~e 392 (493)
T PRK13580 313 VLGGPLPHVMAAKAVALAEARTPEFQKYAQQVVDNARALAEGFLKRGARLVTGGTDNHLVLIDVTSFGLTGRQAESALLD 392 (493)
T ss_pred ccCCCccHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCCCCEEEEEeCCHHHHHHHHHHHHHH
Confidence 4666777743322 22223467999999999999999999999864 3478999999999876544 221
Q ss_pred -----ccccCCCCCCC---CceEEEEeeC----CCCHHHHHHHHHHHHHHHHh
Q psy5049 95 -----IGLGVEQTALN---DGLSLYESSH----LRSANLWNRPHSPSLMAVFR 135 (153)
Q Consensus 95 -----~~i~~PtVP~g---~~RlRI~lsA----~HT~edId~L~~~~L~~~~~ 135 (153)
..+++|+||.| ++||||++++ .|+++||+++++ ++..+.+
T Consensus 393 ~GI~vn~i~~Ptvp~g~~~~srLRIg~~A~ttrg~teedi~~iad-~l~~~l~ 444 (493)
T PRK13580 393 AGIVTNRNSIPSDPNGAWYTSGIRLGTPALTTLGMGSDEMDEVAE-LIVKVLS 444 (493)
T ss_pred CCeEEccccCCCCCCCCCCCceEEeccchhhhcCCCHHHHHHHHH-HHHHHHH
Confidence 78899999999 9999999999 888999999999 7765554
No 7
>PLN02483 serine palmitoyltransferase
Probab=99.16 E-value=2.9e-10 Score=101.43 Aligned_cols=90 Identities=22% Similarity=0.309 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc----------ccccCCCCCCCCceEEEEeeCC
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS----------IGLGVEQTALNDGLSLYESSHL 116 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a----------~~i~~PtVP~g~~RlRI~lsA~ 116 (153)
.++++++++|.++|++.|++.|+.+.+..++|++|+++++..++.+++ .++.||++|.+.+++|||+++.
T Consensus 368 ~~~~~~l~~~~~~l~~~L~~~G~~v~~~~~sp~~~l~l~~~~~~~~~~~~Ll~~GI~v~~~~fp~~p~~~~~vRi~isa~ 447 (489)
T PLN02483 368 AQKLAQIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECLKQNVAVVVVGFPATPLLLARARICISAS 447 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcccCCCCCCEEEEEECCHHHHHHHHHHHHHCCcEEeeeCCCCCCCCCceEEEEeCCC
Confidence 567899999999999999999998766677899999998766554443 4578999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcC
Q psy5049 117 RSANLWNRPHSPSLMAVFRGG 137 (153)
Q Consensus 117 HT~edId~L~~~~L~~~~~~~ 137 (153)
||+|||+++++ +|+++.+..
T Consensus 448 ~t~edId~~l~-~L~~~~~~~ 467 (489)
T PLN02483 448 HSREDLIKALE-VISEVGDLV 467 (489)
T ss_pred CCHHHHHHHHH-HHHHHHHHh
Confidence 99999999998 888776653
No 8
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=99.16 E-value=2.4e-10 Score=98.97 Aligned_cols=106 Identities=9% Similarity=0.012 Sum_probs=78.9
Q ss_pred cCCCCCCCCcccc----c-ccccchHHHHHHHHHHHHHHHHHHhCCCc----------ccCCCCCCeEEEEcCCchHHH-
Q psy5049 28 LFQAQTKPPRSHC----I-CFISGIRRISVLAHNTRYFRRKLNRLGLI----------VYGHRDSPVVPVLVFFFSKVG- 91 (153)
Q Consensus 28 ~~~~~~~p~~~~~----l-~~~~~~~rr~~L~~ni~~fr~~L~~~G~~----------~~~~s~SPIiPV~~g~~~~~~- 91 (153)
.|+++++|+.+++ + ...+.++++++++++..+|++.|++.++. +.+.+.+||++|.++++..+.
T Consensus 237 ~~~~~~~p~~~~aa~~al~~~~~~~~~~~~l~~~~~~l~~~L~~~~~~~~~~~rg~~~~~~~~~~~i~~i~~~~~~~~~~ 316 (392)
T PLN03227 237 CFSASAPPFLAKADATATAGELAGPQLLNRLHDSIANLYSTLTNSSHPYALKLRNRLVITSDPISPIIYLRLSDQEATRR 316 (392)
T ss_pred cccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCccccccccccccCCCCCCCEEEEEeCCHHHhhh
Confidence 3788888865544 2 22456889999999999999999876543 112457999999998753322
Q ss_pred --------hcc----------c------cccCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Q psy5049 92 --------QTS----------I------GLGVEQTALNDGLSLYESSHLRSANLWNRPHSPSLMAVFRG 136 (153)
Q Consensus 92 --------~~a----------~------~i~~PtVP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~~ 136 (153)
.+. . .+++|.|| ..++|+++|+.||+||||++++ +++.+.+.
T Consensus 317 ~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~~~~~~~P--~~~iR~~~~~~~t~eei~~~~~-~l~~~~~~ 382 (392)
T PLN03227 317 TDETLILDQIAHHSLSEGVAVVSTGGHVKKFLQLVP--PPCLRVVANASHTREDIDKLLT-VLGEAVEA 382 (392)
T ss_pred hhhhhHHHHHHHHHHHCCCEEEecccccCCcCCCCC--CceEEEEecCCCCHHHHHHHHH-HHHHHHHH
Confidence 221 1 14578999 4999999999999999999999 88776654
No 9
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=99.15 E-value=3.9e-10 Score=96.71 Aligned_cols=90 Identities=13% Similarity=0.103 Sum_probs=74.1
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc-----------ccccCCCCCCCCceEEEEee
Q psy5049 46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS-----------IGLGVEQTALNDGLSLYESS 114 (153)
Q Consensus 46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a-----------~~i~~PtVP~g~~RlRI~ls 114 (153)
.++++++++++..+|++.|++.|+++. .+.++|+||.+++...+.+++ .+++||+||.|..++||+++
T Consensus 297 ~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~~i~~i~~~~~~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~ 375 (402)
T TIGR01821 297 SQDLRRAHQENVKRLKNLLEALGIPVI-PNPSHIVPVIIGDAALCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPT 375 (402)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCcC-CCCCCEEEEEeCCHHHHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeC
Confidence 467788999999999999999998764 467999999988643332221 55689999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcC
Q psy5049 115 HLRSANLWNRPHSPSLMAVFRGG 137 (153)
Q Consensus 115 A~HT~edId~L~~~~L~~~~~~~ 137 (153)
+.||+|||+++++ +|+.+.+..
T Consensus 376 ~~~t~edi~~~~~-~l~~~~~~~ 397 (402)
T TIGR01821 376 PAHTDKMIDDLVE-ALLLVWDRL 397 (402)
T ss_pred CCCCHHHHHHHHH-HHHHHHHHc
Confidence 9999999999999 888776553
No 10
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=99.14 E-value=2.9e-10 Score=97.89 Aligned_cols=93 Identities=15% Similarity=0.071 Sum_probs=76.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc-----------ccccCCCCCCCCceEEEEe
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS-----------IGLGVEQTALNDGLSLYES 113 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a-----------~~i~~PtVP~g~~RlRI~l 113 (153)
...+.+++++++..+|++.|++.|+.+. .++++|+++.++++..+.+++ .++.||+||.|..++||++
T Consensus 297 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~~~~~i~~~~~~~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~ 375 (410)
T PRK13392 297 TSQTERDAHQDRVAALKAKLNANGIPVM-PSPSHIVPVMVGDPTLCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITP 375 (410)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHcCCCCC-CCCCCEEEEEeCCHHHHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEE
Confidence 4457789999999999999999999874 477899999998653322221 5568999999999999999
Q ss_pred eCCCCHHHHHHHHHHHHHHHHhcCCC
Q psy5049 114 SHLRSANLWNRPHSPSLMAVFRGGGP 139 (153)
Q Consensus 114 sA~HT~edId~L~~~~L~~~~~~~~~ 139 (153)
++.||+||+|++++ +|+.+.+..+-
T Consensus 376 ~~~~t~edid~l~~-aL~~~~~~~~~ 400 (410)
T PRK13392 376 TPLHDDEDIDALVA-ALVAIWDRLEL 400 (410)
T ss_pred CCCCCHHHHHHHHH-HHHHHHHHcCC
Confidence 99999999999999 88887766443
No 11
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=99.09 E-value=9.9e-10 Score=94.58 Aligned_cols=89 Identities=15% Similarity=0.068 Sum_probs=72.7
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc-----------ccccCCCCCCCCceEEEEee
Q psy5049 46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS-----------IGLGVEQTALNDGLSLYESS 114 (153)
Q Consensus 46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a-----------~~i~~PtVP~g~~RlRI~ls 114 (153)
..+.+++++++..+|++.|++.|+.+. .+.++|+||.++++..+.++. .++.||+||.|..++||+++
T Consensus 297 ~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~~i~~v~~~~~~~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~ 375 (406)
T PRK13393 297 SSAERERHQDRVARLRARLDKAGIPHL-PNPSHIVPVMVGDPVLCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPS 375 (406)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCcC-CCCCCeEEEEeCCHHHHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEEC
Confidence 346678999999999999999998764 577999999987643222221 55689999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhc
Q psy5049 115 HLRSANLWNRPHSPSLMAVFRG 136 (153)
Q Consensus 115 A~HT~edId~L~~~~L~~~~~~ 136 (153)
+.||+||+|++++ +|+.+.+.
T Consensus 376 ~~~t~edid~l~~-~l~~~~~~ 396 (406)
T PRK13393 376 PLHTDADIEHLVQ-ALSEIWAR 396 (406)
T ss_pred CCCCHHHHHHHHH-HHHHHHHh
Confidence 9999999999999 88877654
No 12
>PRK09064 5-aminolevulinate synthase; Validated
Probab=99.08 E-value=1.3e-09 Score=93.55 Aligned_cols=89 Identities=13% Similarity=0.131 Sum_probs=72.8
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc-----------ccccCCCCCCCCceEEEEee
Q psy5049 46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS-----------IGLGVEQTALNDGLSLYESS 114 (153)
Q Consensus 46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a-----------~~i~~PtVP~g~~RlRI~ls 114 (153)
.+..+++++++..+|++.|++.|+.+. .+.++|+|+.+++...+.++. .++.||+||.|..++||+++
T Consensus 298 ~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~~iv~i~~~~~~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~ 376 (407)
T PRK09064 298 SNEERERHQERAAKLKAALDAAGIPVM-PNESHIVPVMVGDPEKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPT 376 (407)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCCC-CCCCCEEEEEeCCHHHHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeC
Confidence 355689999999999999999999874 366899999998643222211 55689999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhc
Q psy5049 115 HLRSANLWNRPHSPSLMAVFRG 136 (153)
Q Consensus 115 A~HT~edId~L~~~~L~~~~~~ 136 (153)
+.||++|++++++ +|+.+.+.
T Consensus 377 ~~~t~edi~~l~~-~l~~~~~~ 397 (407)
T PRK09064 377 PFHTDEMIDHLVE-ALVEVWAR 397 (407)
T ss_pred CCCCHHHHHHHHH-HHHHHHHH
Confidence 9999999999999 88877654
No 13
>PLN02822 serine palmitoyltransferase
Probab=99.02 E-value=1.5e-09 Score=96.76 Aligned_cols=111 Identities=16% Similarity=0.058 Sum_probs=81.4
Q ss_pred hhcccEEeecCCCCCCCCcccc----ccc-ccchHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcCCc-----
Q psy5049 19 NRLGLILYVLFQAQTKPPRSHC----ICF-ISGIRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVFFF----- 87 (153)
Q Consensus 19 ~~~g~~~~~~~~~~~~p~~~~~----l~~-~~~~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g~~----- 87 (153)
...||+ ||+++||..+.. +.. +..++++++|+++..+|++.|++. |+.+...+.+||+++.+++.
T Consensus 338 ~~~~~~----fsa~lPp~~~~Aa~~aL~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~spi~~l~l~~~~~~~~ 413 (481)
T PLN02822 338 SSSGYV----FSASLPPYLASAAITAIDVLEDNPSVLAKLKENIALLHKGLSDIPGLSIGSNTLSPIVFLHLEKSTGSAK 413 (481)
T ss_pred cCCcee----eccccCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCEEEEEeCCCccccc
Confidence 345565 788898874433 222 234789999999999999999986 87765557899999999642
Q ss_pred ---hHHHhcc-----------ccccCCCCCCC--CceEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049 88 ---SKVGQTS-----------IGLGVEQTALN--DGLSLYESSHLRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 88 ---~~~~~~a-----------~~i~~PtVP~g--~~RlRI~lsA~HT~edId~L~~~~L~~~~ 134 (153)
....+++ .++.||+++.+ .+.+|+++|+.||++||+++++ +++.+.
T Consensus 414 ~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~is~~~t~edI~~~~~-~l~~~~ 475 (481)
T PLN02822 414 EDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSAGHTESDILKASE-SLKRVA 475 (481)
T ss_pred chHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCcEEEEECCCCCHHHHHHHHH-HHHHHH
Confidence 1112222 45578888653 4689999999999999999998 776544
No 14
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=99.00 E-value=1e-09 Score=95.73 Aligned_cols=86 Identities=8% Similarity=-0.072 Sum_probs=68.0
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCCcccC-CCCCCeEEEEcCCchHHHh-c----c------cc------ccCCCCCCCCc
Q psy5049 46 GIRRISVLAHNTRYFRRKLNRLGLIVYG-HRDSPVVPVLVFFFSKVGQ-T----S------IG------LGVEQTALNDG 107 (153)
Q Consensus 46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~-~s~SPIiPV~~g~~~~~~~-~----a------~~------i~~PtVP~g~~ 107 (153)
.+++++++++|+.+|++.|.+.|+.+.. .+++||+||.++++..+.. + . .. +++|+| .+
T Consensus 284 ~~~~~~~l~~~a~~l~~~L~~~G~~~~~~~~~t~i~~v~~~~~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~p~~---~~ 360 (416)
T PRK13034 284 FKTYAKQVIANAQALAEVLKERGYDLVSGGTDNHLLLVDLRPKGLSGKDAEQALERAGITVNKNTVPGDTESPFV---TS 360 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCEeccCCCCCcEEEEEcCCCCCCHHHHHHHHHhCCcEEeccCCCCCCcCCCC---CC
Confidence 3567999999999999999999998742 2689999999987542211 1 1 22 678887 58
Q ss_pred eEEEEeeC----CCCHHHHHHHHHHHHHHHHh
Q psy5049 108 LSLYESSH----LRSANLWNRPHSPSLMAVFR 135 (153)
Q Consensus 108 RlRI~lsA----~HT~edId~L~~~~L~~~~~ 135 (153)
++|+++++ .||++||+++++ ++..+..
T Consensus 361 ~lR~~~~~~t~~~~~~~di~~l~~-~l~~~~~ 391 (416)
T PRK13034 361 GIRIGTPAGTTRGFGEAEFREIAN-WILDVLD 391 (416)
T ss_pred eeEeCcHHHHhCCCCHHHHHHHHH-HHHHHHh
Confidence 89999999 999999999999 7776654
No 15
>PRK07179 hypothetical protein; Provisional
Probab=98.79 E-value=6.3e-08 Score=83.31 Aligned_cols=93 Identities=16% Similarity=0.029 Sum_probs=74.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhc---c-------ccccCCCCCCCCceEEEEee
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQT---S-------IGLGVEQTALNDGLSLYESS 114 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~---a-------~~i~~PtVP~g~~RlRI~ls 114 (153)
..++++++++++..+|++.|.+.|+.+. +.++|+++.+++...+..+ . ..+.+|++|.+...+||+++
T Consensus 300 ~~~~~~~~l~~~~~~l~~~L~~~g~~v~--~~~~i~~l~~~~~~~~~~~~~~L~~~GI~~~~~~~p~~~~~~~~lRis~~ 377 (407)
T PRK07179 300 SADDRRARLHANARFLREGLSELGYNIR--SESQIIALETGSERNTEVLRDALEERNVFGAVFCAPATPKNRNLIRLSLN 377 (407)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHcCCCCC--CCCCEEEEEeCCHHHHHHHHHHHHHCCceEeeecCCCCCCCCceEEEEEC
Confidence 3467899999999999999999998763 5689999988764322222 1 23478999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCc
Q psy5049 115 HLRSANLWNRPHSPSLMAVFRGGGPG 140 (153)
Q Consensus 115 A~HT~edId~L~~~~L~~~~~~~~~~ 140 (153)
+.||+|||+++++ +|+.+.+..+.-
T Consensus 378 ~~~t~edi~~~~~-~l~~~~~~~~~~ 402 (407)
T PRK07179 378 ADLTASDLDRVLE-VCREARDEVDLW 402 (407)
T ss_pred CCCCHHHHHHHHH-HHHHHHHhhCCC
Confidence 9999999999999 888777665443
No 16
>KOG1358|consensus
Probab=98.75 E-value=1e-08 Score=90.09 Aligned_cols=116 Identities=16% Similarity=0.080 Sum_probs=87.4
Q ss_pred HHHHhhhcccEEeecCCCCCCCCcccc-----cccccchHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcCC-
Q psy5049 14 FRRKLNRLGLILYVLFQAQTKPPRSHC-----ICFISGIRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVFF- 86 (153)
Q Consensus 14 ~~~~l~~~g~~~~~~~~~~~~p~~~~~-----l~~~~~~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g~- 86 (153)
-+++|..+||+ |||++||.++.. .+.+..+++.+.|++.+..|...|+.. |+.+.+...|||+.+.+..
T Consensus 321 ~hQrLSg~~Y~----fSAslPp~la~aa~~ai~i~~~~p~~~~~L~~k~~~~H~~l~~~s~~~v~~~~~SPi~hl~l~~~ 396 (467)
T KOG1358|consen 321 DHQRLSGSGYC----FSASLPPYLAGAAIKAILIEEWNPEIVQPLRAKVAKFHAALSSNSGFIVSGSPESPIIHLQLERS 396 (467)
T ss_pred eeeecccccee----eeccCchhhhhhHHHHHHHHhhCcchhhhhhccccccchhhhcCCceEEecCcCCceeeeeeccc
Confidence 36899999999 999999998877 333466889999999999999999965 5677778889999999876
Q ss_pred ----chHHHh---cc--------------ccccCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049 87 ----FSKVGQ---TS--------------IGLGVEQTALNDGLSLYESSHLRSANLWNRPHSPSLMAVFR 135 (153)
Q Consensus 87 ----~~~~~~---~a--------------~~i~~PtVP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~ 135 (153)
++.... ++ ..-..-.+|. .+-+|||+++.||+|||+++++ +++.+..
T Consensus 397 ~~s~e~e~~lL~eivd~~i~~~~ll~~a~~~~~~e~~~~-~pSiri~~~a~~seeel~ra~~-~ik~~~~ 464 (467)
T KOG1358|consen 397 YGSREKEEKLLEEIVDKCIAEGVLLTRAKYLEKLERCPI-PPSIRICVSAGMSEEELERAAE-LIKEVAS 464 (467)
T ss_pred ccchHHHHHHHHHHHHHHHhhcceehhhhhhhhcccCCC-CCcEEEEEeCCCCHHHHHHHHH-HHHHHHH
Confidence 211111 11 1112223332 3579999999999999999998 8877654
No 17
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=98.73 E-value=1.4e-07 Score=80.16 Aligned_cols=89 Identities=18% Similarity=0.234 Sum_probs=71.0
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc----------ccccCCCCCCCCceEEEEeeC
Q psy5049 46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS----------IGLGVEQTALNDGLSLYESSH 115 (153)
Q Consensus 46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a----------~~i~~PtVP~g~~RlRI~lsA 115 (153)
.++.+++++++..++++.|.+.|+.+. .+.+|++++.+.+.....++. ....||++|.+..++||+++.
T Consensus 291 ~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~~~~~i~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~iRis~~~ 369 (393)
T TIGR01822 291 SNELRDRLWANTRYFRERMEAAGFDIK-PADHPIIPVMLYDAVLAQRFARRLLEEGIYVTGFFYPVVPKGQARIRVQISA 369 (393)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCCC-CCCCCEEEEEeCCHHHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEECC
Confidence 467899999999999999998898764 356899998877633232222 445689889999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhc
Q psy5049 116 LRSANLWNRPHSPSLMAVFRG 136 (153)
Q Consensus 116 ~HT~edId~L~~~~L~~~~~~ 136 (153)
.||++||+++++ +|+.+.+.
T Consensus 370 ~~t~edi~~~~~-~l~~~~~~ 389 (393)
T TIGR01822 370 AHTEEQLDRAVE-AFTRIGRE 389 (393)
T ss_pred CCCHHHHHHHHH-HHHHHHHH
Confidence 999999999999 88776543
No 18
>KOG1357|consensus
Probab=98.53 E-value=5.6e-08 Score=86.62 Aligned_cols=38 Identities=34% Similarity=0.531 Sum_probs=35.4
Q ss_pred ChHHHHHHHhHHHHHHHhhhcccEEeecCCCCCCCCcc
Q psy5049 1 IRLISVLAQNTRYFRRKLNRLGLILYVLFQAQTKPPRS 38 (153)
Q Consensus 1 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~ 38 (153)
+|++.+|++||+|||.+|+++||++||+.||+++|++-
T Consensus 404 ~~k~~~l~~ns~yfr~~l~~~gfivyG~~dSpVvplll 441 (519)
T KOG1357|consen 404 RQKIERLAENSRYFRWELQKMGFIVYGNNDSPVVPLLL 441 (519)
T ss_pred HHHHHHHHhhhHHHHHhhhcCcEEEecCCCCCcceeee
Confidence 47999999999999999999999999999999999743
No 19
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=98.26 E-value=1.3e-05 Score=67.68 Aligned_cols=89 Identities=15% Similarity=0.125 Sum_probs=68.8
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc----------ccccCCCCCCCCceEEEEeeC
Q psy5049 46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS----------IGLGVEQTALNDGLSLYESSH 115 (153)
Q Consensus 46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a----------~~i~~PtVP~g~~RlRI~lsA 115 (153)
..+.+++++++..++++.|.+.|+.+. .+.+|++++.++.......+. .+..||..|.|..++|++++.
T Consensus 283 ~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~v~~~~~~~~~~~~~~iRi~~~~ 361 (385)
T TIGR01825 283 SPELMERLWDNTRFFKAGLGKLGYDTG-GSETPITPVVIGDEKAAQEFSRRLFDEGIFAQSIVFPTVPRGTARIRNIPTA 361 (385)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCCC-CCCCCEEEEEECCHHHHHHHHHHHHHCCcEEcccCCCCCCCCCceEEEEEcC
Confidence 356889999999999999999998764 466789998876532222221 334577778888999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhc
Q psy5049 116 LRSANLWNRPHSPSLMAVFRG 136 (153)
Q Consensus 116 ~HT~edId~L~~~~L~~~~~~ 136 (153)
.+|+|||+++++ +++.+.+.
T Consensus 362 ~~~~e~i~~~~~-~l~~~~~~ 381 (385)
T TIGR01825 362 EHTKDDLDQALD-AYEKVGKE 381 (385)
T ss_pred CCCHHHHHHHHH-HHHHHHHH
Confidence 999999999998 77766543
No 20
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=98.17 E-value=2.5e-05 Score=65.90 Aligned_cols=89 Identities=17% Similarity=0.199 Sum_probs=67.6
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc----------ccccCCCCCCCCceEEEEeeC
Q psy5049 46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS----------IGLGVEQTALNDGLSLYESSH 115 (153)
Q Consensus 46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a----------~~i~~PtVP~g~~RlRI~lsA 115 (153)
..+.+++++++..++++.|.+.|+.+. .+.++++++.+++.....++. .+..||..+.+..++|++++.
T Consensus 295 ~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~v~~~~~~~~~~~~~~iRi~~~~ 373 (397)
T PRK06939 295 SDELRDRLWENARYFREGMTAAGFTLG-PGEHPIIPVMLGDAKLAQEFADRLLEEGVYVIGFSFPVVPKGQARIRTQMSA 373 (397)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCcC-CCCCCEEEEEECCHHHHHHHHHHHHHCCceEeeeCCCCCCCCCceEEEEECC
Confidence 367899999999999999999988653 356788877765432222221 333577777778899999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhc
Q psy5049 116 LRSANLWNRPHSPSLMAVFRG 136 (153)
Q Consensus 116 ~HT~edId~L~~~~L~~~~~~ 136 (153)
.+|++||+++++ .|+.+.+.
T Consensus 374 ~~~~~~i~~~l~-~L~~~~~~ 393 (397)
T PRK06939 374 AHTKEQLDRAID-AFEKVGKE 393 (397)
T ss_pred CCCHHHHHHHHH-HHHHHHHH
Confidence 999999999999 88776554
No 21
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=97.88 E-value=8.7e-05 Score=63.32 Aligned_cols=85 Identities=12% Similarity=0.023 Sum_probs=59.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCch--HHHhcc-------ccccCCCCCCCCceEEEEeeC
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFS--KVGQTS-------IGLGVEQTALNDGLSLYESSH 115 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~--~~~~~a-------~~i~~PtVP~g~~RlRI~lsA 115 (153)
.+.+.+++++++.++|++.|...+ .++++|+.+.+.. ...... ..+.+|++ +.+||++++
T Consensus 262 ~~~~~~~~l~~l~~~l~~~l~~~~-------~~~~~~i~~~~~~~~~~~~~L~~~gi~v~~~~~~~~----~~iRis~~~ 330 (370)
T PRK05937 262 EGELARKQLFRLKEYFAQKFSSAA-------PGCVQPIFLPGISEQELYSKLVETGIRVGVVCFPTG----PFLRVNLHA 330 (370)
T ss_pred CcHHHHHHHHHHHHHHHHhcCCCC-------CCCEEEEEeCChhHHHHHHHHHHCCeeEEeeCCCCC----CEEEEEcCC
Confidence 446688999999999998875422 2457788876432 122111 33356653 479999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCce
Q psy5049 116 LRSANLWNRPHSPSLMAVFRGGGPGI 141 (153)
Q Consensus 116 ~HT~edId~L~~~~L~~~~~~~~~~~ 141 (153)
.||+||||++++ +|+.+.+..+-++
T Consensus 331 ~~t~edid~l~~-~L~~~~~~~~~~~ 355 (370)
T PRK05937 331 FNTEDEVDILVS-VLATYLEKYQKNV 355 (370)
T ss_pred CCCHHHHHHHHH-HHHHHHHHhCCCc
Confidence 999999999999 8887776665554
No 22
>PRK02948 cysteine desulfurase; Provisional
Probab=97.86 E-value=5.5e-05 Score=64.18 Aligned_cols=91 Identities=9% Similarity=0.026 Sum_probs=61.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHhCCCcccCC-CCCCeEEEE----cC--CchHHHhcc----c----------cccCCC--
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRLGLIVYGH-RDSPVVPVL----VF--FFSKVGQTS----I----------GLGVEQ-- 101 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~-s~SPIiPV~----~g--~~~~~~~~a----~----------~i~~Pt-- 101 (153)
..++.+++++++..++++.|+++|+.+... +.++++|.+ +. +.++..... + .+.+|+
T Consensus 254 ~~~~~~~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~gI~v~~g~~c~~~~~~p~~~ 333 (381)
T PRK02948 254 NMQEESLRFKELRSYFLEQIQTLPLPIEVEGHSTSCLPHIIGVTIKGIEGQYTMLECNRRGIAISTGSACQVGKQEPSKT 333 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCEEEeCCCccCcCCEEEEEeCCCCHHHHHHhcccCCEEEEchHhcCCCCCCCCHH
Confidence 346778999999999999999998754322 133444433 22 222222221 1 133443
Q ss_pred -------CCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Q psy5049 102 -------TALNDGLSLYESSHLRSANLWNRPHSPSLMAVFRG 136 (153)
Q Consensus 102 -------VP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~~ 136 (153)
+|.+.+.+||+++..||+||+|++++ +|+.+.+.
T Consensus 334 ~~~~~~~~~~~~~~lRis~~~~~t~~di~~l~~-~l~~~~~~ 374 (381)
T PRK02948 334 MLAIGKTYEEAKQFVRFSFGQQTTKDQIDTTIH-ALETIGNQ 374 (381)
T ss_pred HHHcCCChHHhCceEEEEcCCCCCHHHHHHHHH-HHHHHHHH
Confidence 45567899999999999999999999 88776544
No 23
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=97.82 E-value=0.00024 Score=59.54 Aligned_cols=84 Identities=14% Similarity=0.058 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc----------ccccCCCCCCCCceEEEEeeCC
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS----------IGLGVEQTALNDGLSLYESSHL 116 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a----------~~i~~PtVP~g~~RlRI~lsA~ 116 (153)
+++++++.++..++.+.|++.|+.+. .+.++++.+.+.+.....++. .+..+|.+|.|...+||+++..
T Consensus 290 ~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~lRis~~~~ 368 (385)
T PRK05958 290 PERRERLAALIARLRAGLRALGFQLM-DSQSAIQPLIVGDNERALALAAALQEQGFWVGAIRPPTVPAGTSRLRITLTAA 368 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcC-CCCCCEEEEEeCCHHHHHHHHHHHHHCCceEecccCCCCCCCCceEEEEecCC
Confidence 67899999999999999999988763 466788888876532222222 2225566777778999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q psy5049 117 RSANLWNRPHSPSLMA 132 (153)
Q Consensus 117 HT~edId~L~~~~L~~ 132 (153)
+|++|++++++ .|+.
T Consensus 369 ~~~~~i~~~l~-~l~~ 383 (385)
T PRK05958 369 HTEADIDRLLE-ALAE 383 (385)
T ss_pred CCHHHHHHHHH-HHHh
Confidence 99999999888 6654
No 24
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=97.81 E-value=0.00019 Score=59.36 Aligned_cols=83 Identities=16% Similarity=0.080 Sum_probs=62.9
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc----------ccccCCCCCCCCceEEEEeeC
Q psy5049 46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS----------IGLGVEQTALNDGLSLYESSH 115 (153)
Q Consensus 46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a----------~~i~~PtVP~g~~RlRI~lsA 115 (153)
.++.++++.++..++.+.|.+.|+.+. .+.++++.+.++......++. .+..+|..+.|...+||+++.
T Consensus 267 ~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~iRis~~~ 345 (360)
T TIGR00858 267 EPWRREKLLALIARLRAGLEALGFTLM-PSCTPIVPVIIGDNASALALAEELQQQGIFVGAIRPPTVPAGTSRLRLTLSA 345 (360)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCccC-CCCCCEEEEEeCCHHHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEEcC
Confidence 367899999999999999999988664 456788888886532222222 222566667677789999999
Q ss_pred CCCHHHHHHHHHHHH
Q psy5049 116 LRSANLWNRPHSPSL 130 (153)
Q Consensus 116 ~HT~edId~L~~~~L 130 (153)
.||++|++++++ +|
T Consensus 346 ~~~~~~i~~~l~-~l 359 (360)
T TIGR00858 346 AHTPGDIDRLAE-AL 359 (360)
T ss_pred CCCHHHHHHHHH-hh
Confidence 999999999887 54
No 25
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=97.80 E-value=7.7e-05 Score=63.41 Aligned_cols=80 Identities=19% Similarity=0.124 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCC-CcccCC----CCCCeEEEEcCCc--hHHHhcc----c-----------cccCCCCCCC
Q psy5049 48 RRISVLAHNTRYFRRKLNRLG-LIVYGH----RDSPVVPVLVFFF--SKVGQTS----I-----------GLGVEQTALN 105 (153)
Q Consensus 48 ~rr~~L~~ni~~fr~~L~~~G-~~~~~~----s~SPIiPV~~g~~--~~~~~~a----~-----------~i~~PtVP~g 105 (153)
..+++..+...++++.|.+.+ +.+.+. ..+||+++.+.+. ....+.. + .+++|.+|.+
T Consensus 294 ~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~ 373 (397)
T TIGR01976 294 AIDAYENRLAEYLLVGLSDLPGVTLYGVARLAARVPTVSFTVHGLPPQRVVRRLADQGIDAWAGHFYAVRLLRRLGLNDE 373 (397)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccCCCceEEEEeCCcCHHHHHHHHHHCCeEEEeCccchHHHHHHhCCCCC
Confidence 345666778889999998876 655432 2588998877542 2222221 1 1245788877
Q ss_pred CceEEEEeeCCCCHHHHHHHHH
Q psy5049 106 DGLSLYESSHLRSANLWNRPHS 127 (153)
Q Consensus 106 ~~RlRI~lsA~HT~edId~L~~ 127 (153)
...+||+++..+|++|++++++
T Consensus 374 ~~~iRis~~~~~t~~di~~l~~ 395 (397)
T TIGR01976 374 GGVVRVGLAHYNTAEEVDRLLE 395 (397)
T ss_pred CCeEEEEeeccCCHHHHHHHHH
Confidence 7899999999999999999887
No 26
>PRK07505 hypothetical protein; Provisional
Probab=97.76 E-value=0.00031 Score=60.53 Aligned_cols=86 Identities=9% Similarity=-0.120 Sum_probs=60.1
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc----------ccccCCCCCCCCceEEEEeeC
Q psy5049 46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS----------IGLGVEQTALNDGLSLYESSH 115 (153)
Q Consensus 46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a----------~~i~~PtVP~g~~RlRI~lsA 115 (153)
..+++++|+++..++...+... +. ....+|.++.+++...+.++. .+..||++|.+...+||++++
T Consensus 304 ~~~~~~~l~~~~~~~~~~~~~~---~~-g~~~~i~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~p~~~~~~~~lRi~~~~ 379 (402)
T PRK07505 304 LDQLQQKLQNNIALFDSLIPTE---QS-GSFLPIRLIYIGDEDTAIKAAKQLLDRGFYTSPVFFPVVAKGRAGLRIMFRA 379 (402)
T ss_pred cHHHHHHHHHHHHHHHHHHHhc---CC-CCCCCEEEEEeCCHHHHHHHHHHHHHCCCeEeeecCCCCCCCCceEEEecCc
Confidence 3567788888888776654332 11 244788777766532222221 344788889888899999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhc
Q psy5049 116 LRSANLWNRPHSPSLMAVFRG 136 (153)
Q Consensus 116 ~HT~edId~L~~~~L~~~~~~ 136 (153)
.||+||++++++ +|+.+.+.
T Consensus 380 ~~t~eei~~~~~-~l~~~l~~ 399 (402)
T PRK07505 380 SHTNDEIKRLCS-LLKEILDE 399 (402)
T ss_pred cCCHHHHHHHHH-HHHHHHHh
Confidence 999999999999 88766543
No 27
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=97.70 E-value=0.00033 Score=58.81 Aligned_cols=84 Identities=15% Similarity=-0.001 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc--ccccCCCCCCCCceEEEEeeCCCCHHHHHH
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS--IGLGVEQTALNDGLSLYESSHLRSANLWNR 124 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a--~~i~~PtVP~g~~RlRI~lsA~HT~edId~ 124 (153)
+++++++.++.+++++.|++.|+.....+.++++.+.+.+.....+.. ..|.-... .+...+||+++..+|++|+|+
T Consensus 287 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~v~~~~~~~~~v~~~L~~~gi~v~~~-~~~~~iRis~~~~~t~edid~ 365 (373)
T TIGR03812 287 RKIVAECMENTRYLVEELKKIGFEPVIEPVLNIVAFEVDDPEEVRKKLRDRGWYVSVT-RCPKALRIVVMPHVTREHIEE 365 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEcCCCceEEEEEeCCHHHHHHHHHHCCceeccC-CCCCEEEEEEECCCCHHHHHH
Confidence 567899999999999999999985433456788887766544333322 22211111 134689999999999999999
Q ss_pred HHHHHHHH
Q psy5049 125 PHSPSLMA 132 (153)
Q Consensus 125 L~~~~L~~ 132 (153)
+++ +|+.
T Consensus 366 l~~-~L~~ 372 (373)
T TIGR03812 366 FLE-DLKE 372 (373)
T ss_pred HHH-HHhh
Confidence 988 7654
No 28
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=97.67 E-value=0.0002 Score=63.10 Aligned_cols=91 Identities=11% Similarity=0.005 Sum_probs=65.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHhCCCcccCC-CCCCeEEEEcCCch----HHHhcc----ccccCCCCCCCC-----ceEE
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRLGLIVYGH-RDSPVVPVLVFFFS----KVGQTS----IGLGVEQTALND-----GLSL 110 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~-s~SPIiPV~~g~~~----~~~~~a----~~i~~PtVP~g~-----~RlR 110 (153)
..++.++++++++.+|.+.|.+.|+.+.+. +++++++|.+.... .+.... +.+..+++|.+. +.+|
T Consensus 300 ~~~~~~~~i~~l~~~l~~~L~~~g~~v~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~vs~~~~p~~~~~~~~~~vR 379 (452)
T PTZ00094 300 EWKEYAKQVLKNAKALAAALEKRGYDLVTGGTDNHLVLVDLRPFGITGSKMEKLLDAVNISVNKNTIPGDKSALNPSGVR 379 (452)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCcEEecCCCCCceEeecCCcCCCCHHHHHHHHHHCCcEEecccCCCCCcCCCCCeEE
Confidence 446789999999999999999889876432 34677777665432 222222 334466666543 7899
Q ss_pred EEe----eCCCCHHHHHHHHHHHHHHHHhc
Q psy5049 111 YES----SHLRSANLWNRPHSPSLMAVFRG 136 (153)
Q Consensus 111 I~l----sA~HT~edId~L~~~~L~~~~~~ 136 (153)
++. ++.|+++||+++++ +|..+...
T Consensus 380 is~~~~tt~g~~~~di~~l~~-~l~~~~~~ 408 (452)
T PTZ00094 380 LGTPALTTRGAKEKDFKFVAD-FLDRAVKL 408 (452)
T ss_pred ECCHHHHhCCCCHHHHHHHHH-HHHHHHHH
Confidence 999 77777999999999 77766553
No 29
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=97.63 E-value=0.0003 Score=60.49 Aligned_cols=100 Identities=9% Similarity=-0.035 Sum_probs=61.9
Q ss_pred HHHHHhHHHHHHHhhhc-ccEEeecCCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEE
Q psy5049 5 SVLAQNTRYFRRKLNRL-GLILYVLFQAQTKPPRSHCICFISGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVL 83 (153)
Q Consensus 5 ~~~~~~~~~~~~~l~~~-g~~~~~~~~~~~~p~~~~~l~~~~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~ 83 (153)
++..+|++||+++|.++ ||.++++..+ -+|+. .+..................|.+.|.+.|+.
T Consensus 283 ~~~~~~~~~l~~~L~~l~g~~~~~~~~~-~~~i~--~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~------------- 346 (387)
T PRK09331 283 DEEVKKARWFVDELEKIEGFKQLGEKPR-NHDLM--KFETPSFDEIAKKHKRRGFFLYEELKKRGIH------------- 346 (387)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEeccCcC-cCCeE--EEeCCchhHHhhhccccchhHHHHHHHcCce-------------
Confidence 45568999999999999 9999874221 23321 0111100000111112234466666666542
Q ss_pred cCCchHHHhccccccCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHhcCC
Q psy5049 84 VFFFSKVGQTSIGLGVEQTALNDGLSLYESSHLRSANLWNRPHSPSLMAVFRGGG 138 (153)
Q Consensus 84 ~g~~~~~~~~a~~i~~PtVP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~~~~ 138 (153)
.++.|.+++|.+.+..||++|++++++ +|+.+.+..+
T Consensus 347 -----------------~~~~~~~~i~ri~~~g~t~~di~~l~~-aL~~i~~~~~ 383 (387)
T PRK09331 347 -----------------GIKPGATKEFKLSTYGLTWEQVEYVAD-AFKEIAEKYG 383 (387)
T ss_pred -----------------EEccCCceEEEEEeccCCHHHHHHHHH-HHHHHHHhcC
Confidence 123456888888898899999999999 8887766543
No 30
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=97.60 E-value=0.00031 Score=58.24 Aligned_cols=87 Identities=7% Similarity=-0.051 Sum_probs=60.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcCCc----h---HHHhcc----ccccCCCCCCCCceEEEE
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVFFF----S---KVGQTS----IGLGVEQTALNDGLSLYE 112 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g~~----~---~~~~~a----~~i~~PtVP~g~~RlRI~ 112 (153)
..+++++++.++.+++.+.|.+. |+.+.+.++++++.+.+.+. . ...+.. ..+..+....+...+|++
T Consensus 245 g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~iv~f~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~lRis 324 (345)
T cd06450 245 GYGEHIDRIVDLAKYLAELIRADPGFELLGEPNLSLVCFRLKPSVKLDELNYDLSDRLNERGGWHVPATTLGGPNVLRFV 324 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEEEECCcchhhHHHHHHHHHHHhcCCEEEEeeEECCeEEEEEE
Confidence 44788899999999999999877 56554446789998887652 1 222211 122222222256899999
Q ss_pred eeCCC-CHHHHHHHHHHHHHH
Q psy5049 113 SSHLR-SANLWNRPHSPSLMA 132 (153)
Q Consensus 113 lsA~H-T~edId~L~~~~L~~ 132 (153)
++..| |+||+|++++ +|+.
T Consensus 325 ~~~~~~t~~di~~l~~-~l~~ 344 (345)
T cd06450 325 VTNPLTTRDDADALLE-DIER 344 (345)
T ss_pred ecCCCCCHHHHHHHHH-HHHh
Confidence 99987 9999999998 6653
No 31
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=97.58 E-value=0.00056 Score=58.33 Aligned_cols=92 Identities=9% Similarity=-0.048 Sum_probs=67.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHhCCCccc-CCCCCCeEEEEcCCc----hHHHhcc-------ccccCCCCC---CCCceE
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRLGLIVY-GHRDSPVVPVLVFFF----SKVGQTS-------IGLGVEQTA---LNDGLS 109 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~G~~~~-~~s~SPIiPV~~g~~----~~~~~~a-------~~i~~PtVP---~g~~Rl 109 (153)
..+++++++.++..++++.|.+.|+.+. ....++.+.+.+.+. ....+.. ..+.+|+++ .+...+
T Consensus 276 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~l 355 (402)
T cd00378 276 EFKAYAKQVVENAKALAEALKERGFKVVSGGTDNHLVLVDLRPKGITGKAAEDALEEAGITVNKNTLPWDPSSPFVPSGI 355 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeEeecCCCCeEEEEeCCccCCCHHHHHHHHHHcCcEEcCCcCCCCCCCCCCCCee
Confidence 3467889999999999999999998763 224588888887631 2222222 345678875 356899
Q ss_pred EEEeeC----CCCHHHHHHHHHHHHHHHHhcC
Q psy5049 110 LYESSH----LRSANLWNRPHSPSLMAVFRGG 137 (153)
Q Consensus 110 RI~lsA----~HT~edId~L~~~~L~~~~~~~ 137 (153)
|++.+. .|+++||+++++ .++.+.+..
T Consensus 356 Ri~~~~~~~~~~~~~di~~~~~-~l~~~~~~~ 386 (402)
T cd00378 356 RIGTPAMTTRGMGEEEMEEIAD-FIARALKDA 386 (402)
T ss_pred EecCHHHHHhCCCHHHHHHHHH-HHHHHHhcc
Confidence 999988 578999999999 888766554
No 32
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=97.55 E-value=0.0011 Score=54.79 Aligned_cols=86 Identities=22% Similarity=0.173 Sum_probs=59.9
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc----------ccccCCCCCCCCceEEEEeeC
Q psy5049 46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS----------IGLGVEQTALNDGLSLYESSH 115 (153)
Q Consensus 46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a----------~~i~~PtVP~g~~RlRI~lsA 115 (153)
...+++++.++..++++.|.+.|+...+.+.+.+..+.+.+.....++. ....|++.+.+...+|++++.
T Consensus 252 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~~~~~~~~~~~~iRi~~~~ 331 (349)
T cd06454 252 GPERRERLQENVRYLRRGLKELGFPVGGSPSHIIPPLIGDDPAKAVAFSDALLERGIYVQAIRYPTVPRGTARLRISLSA 331 (349)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcEEEEeCCChHHHHHHHHHHHhCCceEEEecCCccCCCCCeEEEEEeC
Confidence 4678899999999999999999887654334444444443222222221 222455555667899999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy5049 116 LRSANLWNRPHSPSLMA 132 (153)
Q Consensus 116 ~HT~edId~L~~~~L~~ 132 (153)
.+|++|++++++ +++.
T Consensus 332 ~~~~~~i~~~~~-~l~~ 347 (349)
T cd06454 332 AHTKEDIDRLLE-ALKE 347 (349)
T ss_pred CCCHHHHHHHHH-HHHH
Confidence 999999999888 6654
No 33
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=97.52 E-value=0.0011 Score=55.46 Aligned_cols=86 Identities=14% Similarity=-0.043 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc--ccccCCCCCCCCceEEEEeeCCCCHHHHHH
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS--IGLGVEQTALNDGLSLYESSHLRSANLWNR 124 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a--~~i~~PtVP~g~~RlRI~lsA~HT~edId~ 124 (153)
.++++++.++..+|++.|.+.|+.+...+..+++.+-+.+.....+.. ..|.-..+ .+...+||+++..+|+|||++
T Consensus 282 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~v~~~~~~~~~v~~~L~~~gi~v~~~-~~~~~iRis~~~~~t~edi~~ 360 (371)
T PRK13520 282 RKVVERCMENTRWLAEELKERGFEPVIEPVLNIVAFDDPNPDEVREKLRERGWRVSVT-RCPEALRIVCMPHVTREHIEN 360 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEecCCCceEEEEecCCHHHHHHHHHHCCceeccC-CCCCEEEEEEECCCCHHHHHH
Confidence 568899999999999999999987323445677666655444333322 22211111 123579999999999999999
Q ss_pred HHHHHHHHHH
Q psy5049 125 PHSPSLMAVF 134 (153)
Q Consensus 125 L~~~~L~~~~ 134 (153)
+++ +|+.+.
T Consensus 361 ~~~-~l~~~~ 369 (371)
T PRK13520 361 FLE-DLKEVK 369 (371)
T ss_pred HHH-HHHHHh
Confidence 998 777653
No 34
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=97.50 E-value=0.00025 Score=63.61 Aligned_cols=87 Identities=11% Similarity=-0.042 Sum_probs=63.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHhCCCcccCC-CCCCeEEEEcC----CchHHHh---cc-------------ccccCCCCC
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRLGLIVYGH-RDSPVVPVLVF----FFSKVGQ---TS-------------IGLGVEQTA 103 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~-s~SPIiPV~~g----~~~~~~~---~a-------------~~i~~PtVP 103 (153)
..++.++++++|+.+|++.|.+.|+.+.+. ++++++-|-+. +..++.. .+ .++++|+|+
T Consensus 311 ~~~~~~~~~~~na~~L~~~L~~~G~~l~~~~t~~hi~lv~~~~~gi~~~~~~~~L~~~~I~~nk~~~p~~~~~~~~~giR 390 (475)
T PLN03226 311 EFKAYQKQVKANAAALANRLMSKGYKLVTGGTDNHLVLWDLRPLGLTGSRVEKVLDLAHITLNKNAVPGDSSALVPGGVR 390 (475)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCEEEcCCCCCCEEEEEccCCCCCHHHHHHHHHHCCCEECCCCCCCCcccCCCCCcc
Confidence 346689999999999999999999987532 45777644331 1222222 22 356889999
Q ss_pred CCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049 104 LNDGLSLYESSHLRSANLWNRPHSPSLMAVFR 135 (153)
Q Consensus 104 ~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~ 135 (153)
.|++++ .+..|+++|++++++ .+..+.+
T Consensus 391 iGt~~l---t~~g~~~~d~~~ia~-~i~~~~~ 418 (475)
T PLN03226 391 IGTPAM---TSRGLVEKDFEKVAE-FLHRAVT 418 (475)
T ss_pred cCcHHH---HHCCCCHHHHHHHHH-HHHHHHH
Confidence 999988 999999999999998 7765554
No 35
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=97.49 E-value=0.00068 Score=57.53 Aligned_cols=81 Identities=10% Similarity=0.005 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCccc-CCCCCCeEEEEcCC--chHHHhcc-----ccc-cCCCCCCCCceEEEEeeCCC
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVY-GHRDSPVVPVLVFF--FSKVGQTS-----IGL-GVEQTALNDGLSLYESSHLR 117 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~-~~s~SPIiPV~~g~--~~~~~~~a-----~~i-~~PtVP~g~~RlRI~lsA~H 117 (153)
++.+++++++..++++.|++.+.... .....+++.+-+.. .....+++ ..+ .++..|.+.+++|++++..|
T Consensus 307 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~L~~~gi~~~~~~~~~~~~lRis~~~~~ 386 (398)
T cd00613 307 KEIAERAHLNANYLAKRLKEVGGVLPFNGPFFHEFVLRLPPLYGIRAEDLAKALIDGGFHAPTMYLPVDGTLMIEPTETE 386 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccCCCCeeEEEEEEcCCcchHHHHHHHHhhhhcCccccccccCCCCeEEEEcCCCC
Confidence 56789999999999999999876531 11223444444442 12222222 233 22223557789999999999
Q ss_pred CHHHHHHHHH
Q psy5049 118 SANLWNRPHS 127 (153)
Q Consensus 118 T~edId~L~~ 127 (153)
|+||||++++
T Consensus 387 t~edid~~~~ 396 (398)
T cd00613 387 TKEELDALLE 396 (398)
T ss_pred CHHHHHHHHH
Confidence 9999999887
No 36
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=97.48 E-value=0.0012 Score=55.64 Aligned_cols=87 Identities=10% Similarity=-0.097 Sum_probs=60.5
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCCcccCC--CCCCeEEEEcCCc------hHHHhcc---ccccCCCCCCCCceEEEEee
Q psy5049 46 GIRRISVLAHNTRYFRRKLNRLGLIVYGH--RDSPVVPVLVFFF------SKVGQTS---IGLGVEQTALNDGLSLYESS 114 (153)
Q Consensus 46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~--s~SPIiPV~~g~~------~~~~~~a---~~i~~PtVP~g~~RlRI~ls 114 (153)
.++++++++++..++++.|.+.|+.+... ..+|++..+...+ ....+.. ..+..|....+...+||+.+
T Consensus 262 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gi~v~~g~~~~~~~iRi~~~ 341 (363)
T TIGR02326 262 VAARHQRYQQNQKTLVAGMRALGFEPLLDDEIQSPIITSFYSPEDPDYRFADFYQRLKEQGFVIYPGKVSQVDCFRIGNI 341 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCeeccCcccCCceEEEEECCCCCCCCHHHHHHHHHHCCEEEECCcCCCCCEEEEecC
Confidence 35688999999999999999999876432 2477665444332 2222222 23344554445578999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q psy5049 115 HLRSANLWNRPHSPSLMAV 133 (153)
Q Consensus 115 A~HT~edId~L~~~~L~~~ 133 (153)
..+|.||++++++ +|+.+
T Consensus 342 ~~~~~edv~~~l~-~l~~~ 359 (363)
T TIGR02326 342 GEVDAADITRLLT-AIGKA 359 (363)
T ss_pred CCCCHHHHHHHHH-HHHHH
Confidence 9999999999998 77664
No 37
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=97.40 E-value=0.00085 Score=57.25 Aligned_cols=80 Identities=13% Similarity=0.057 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCccc--CCCCCCeEEEEc--------CCchHHHhcc-------c-cccCCCCCCCCceEEE
Q psy5049 50 ISVLAHNTRYFRRKLNRLGLIVY--GHRDSPVVPVLV--------FFFSKVGQTS-------I-GLGVEQTALNDGLSLY 111 (153)
Q Consensus 50 r~~L~~ni~~fr~~L~~~G~~~~--~~s~SPIiPV~~--------g~~~~~~~~a-------~-~i~~PtVP~g~~RlRI 111 (153)
..+..++.++|++.|+++|+.+. ..+.++|+-+-+ ++...+..+. + +++++ ...++||
T Consensus 270 ~~~~~~~~~~l~~~L~~~g~~~~~~~~s~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~e~GI~~ir~~----~~~~iRi 345 (370)
T TIGR02539 270 WDEEVKKTRWFVAELEDIGFIQLGQKPKEHDLVKFETPGFHEIAQKHKRRGYFLYEELKKRGIHGIRSG----QTKYFKL 345 (370)
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEccCCCcCceEEEECCchhHHhhhhccccHHHHHHHHhCCCccccCC----cceEEEE
Confidence 34456778899999999998752 246788883332 2222222222 3 24432 2469999
Q ss_pred EeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049 112 ESSHLRSANLWNRPHSPSLMAVFR 135 (153)
Q Consensus 112 ~lsA~HT~edId~L~~~~L~~~~~ 135 (153)
+++ .||+||++++++ +|+.+.+
T Consensus 346 s~~-~~t~e~i~~l~~-~L~~~~~ 367 (370)
T TIGR02539 346 SVY-GLTKEQVEYVVD-SFEEIVE 367 (370)
T ss_pred Eec-CCCHHHHHHHHH-HHHHHHH
Confidence 994 799999999999 8876654
No 38
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=97.13 E-value=0.0014 Score=54.78 Aligned_cols=78 Identities=10% Similarity=-0.041 Sum_probs=59.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc-----------ccccCCCCCCCCceEEEEe
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS-----------IGLGVEQTALNDGLSLYES 113 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a-----------~~i~~PtVP~g~~RlRI~l 113 (153)
.-.+++++++++..++.+.|.+.|+.+.. +.++++.+...+.....++. .+..+|.+ ...+||++
T Consensus 273 ~~~~~~~~l~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~pg~~~~~---~~~iRi~~ 348 (363)
T PF00155_consen 273 WLEELRERLRENRDLLREALEEIGITVLP-PEAGFFLWVRLDPNDAEELAQELLEEYGILVRPGSYFGV---PGYIRISL 348 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSEEEH-HSBSSEEEEEESHHHHHHHHHHHHHHHTEEEEEGGGGTS---TTEEEEEG
T ss_pred ccccchhhHHHHHHHHHHHHHHhhhheee-ccCccEEEEEcccchHHHHHHHHHHhCCEEEEecCCCCC---CCEEEEEe
Confidence 34778999999999999999999998754 45788877776654222221 44456665 67899999
Q ss_pred eCCCCHHHHHHHHH
Q psy5049 114 SHLRSANLWNRPHS 127 (153)
Q Consensus 114 sA~HT~edId~L~~ 127 (153)
|.+++|+++++++
T Consensus 349 -a~~~~e~~~~~~~ 361 (363)
T PF00155_consen 349 -ASHSEEDLEEALE 361 (363)
T ss_dssp -GCSCHHHHHHHHH
T ss_pred -ccCCHHHHHHHHh
Confidence 9999999999877
No 39
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=97.12 E-value=0.0039 Score=52.11 Aligned_cols=87 Identities=17% Similarity=0.008 Sum_probs=56.1
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCCcccCCC--CCCeE-EEEcCCc---hHHHhcc--c-cc-cCCC-CCCCCceEEEEee
Q psy5049 46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHR--DSPVV-PVLVFFF---SKVGQTS--I-GL-GVEQ-TALNDGLSLYESS 114 (153)
Q Consensus 46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s--~SPIi-PV~~g~~---~~~~~~a--~-~i-~~Pt-VP~g~~RlRI~ls 114 (153)
.++.+++..++..++++.|.+.|+.+.+.+ .++++ .+.+.+. ....+.. . .| .-|. .+.....+|++++
T Consensus 257 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~gI~~~~g~~~~~~~~iRis~~ 336 (356)
T cd06451 257 LENRWARHRRLAKALREGLEALGLKLLAKPELRSPTVTAVLVPEGVDGDEVVRRLMKRYNIEIAGGLGPTAGKVFRIGHM 336 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCeeccCcccCCCceEEEECCCCCCHHHHHHHHHHhCCEEEecccccccCCEEEEecC
Confidence 367788889999999999999898664322 24554 3444332 2222111 1 22 1111 1222359999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q psy5049 115 HLRSANLWNRPHSPSLMAV 133 (153)
Q Consensus 115 A~HT~edId~L~~~~L~~~ 133 (153)
..||+|||+++++ +|+.+
T Consensus 337 ~~~~~e~v~~~~~-~l~~~ 354 (356)
T cd06451 337 GEATREDVLGVLS-ALEEA 354 (356)
T ss_pred CCCCHHHHHHHHH-HHHHH
Confidence 9999999999998 77664
No 40
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=97.10 E-value=0.006 Score=51.42 Aligned_cols=91 Identities=13% Similarity=-0.081 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCC--CCCe-EEEEcCCc-----hHHHhcc---ccccCCCCCCCCceEEEEeeC
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVYGHR--DSPV-VPVLVFFF-----SKVGQTS---IGLGVEQTALNDGLSLYESSH 115 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s--~SPI-iPV~~g~~-----~~~~~~a---~~i~~PtVP~g~~RlRI~lsA 115 (153)
+++++++.++..++++.|.+.|+.+...+ .+|+ +.+.+... ....+.. ..+.+|........+|++...
T Consensus 264 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~g~~~~~~~iRis~~~ 343 (368)
T PRK13479 264 PARGARYANNQRTLVAGMRALGFEPLLDAEIQSPIIVTFHAPADPAYDFKEFYERLKEQGFVIYPGKLTQVDTFRIGCIG 343 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccCCchhcCceEEEEECCCCCCcCHHHHHHHHHHCCEEEecCCCCCCCEEEEecCC
Confidence 67778999999999999999998764322 3565 44443322 2222222 233345433334679999988
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCC
Q psy5049 116 LRSANLWNRPHSPSLMAVFRGGG 138 (153)
Q Consensus 116 ~HT~edId~L~~~~L~~~~~~~~ 138 (153)
.+|+||++++++ +|+.+.+..|
T Consensus 344 ~~t~edi~~~l~-~L~~~l~~~~ 365 (368)
T PRK13479 344 DVDAADIRRLVA-AIAEALYWMG 365 (368)
T ss_pred CCCHHHHHHHHH-HHHHHHHHcC
Confidence 999999999999 8887766544
No 41
>PRK07678 aminotransferase; Validated
Probab=97.01 E-value=0.0037 Score=55.46 Aligned_cols=90 Identities=13% Similarity=0.014 Sum_probs=62.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHhC----CCcccCCCCCCeEEEEcCC---------chHHHhcc---------ccccCCCC
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRL----GLIVYGHRDSPVVPVLVFF---------FSKVGQTS---------IGLGVEQT 102 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~----G~~~~~~s~SPIiPV~~g~---------~~~~~~~a---------~~i~~PtV 102 (153)
+.+.+.+++++...+|++.|++. ++.....+...++.|.+.. .+.+..+. ....+|+|
T Consensus 337 ~~~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~~~~~~~~~~a~~i~~~l~~~Gv~~~~~g~~v 416 (451)
T PRK07678 337 ENENLIERSAQLGELLLEQLKEELGEHPLVGDIRGKGLLVGIELVNDKETKEPADNDKVASVVAACKEKGLIIGKNGDTV 416 (451)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeeceEEEEEEecCCcccCcCchHHHHHHHHHHHHCCcEEeecCccc
Confidence 44578899999999999999643 3211112445677777732 12233322 22357889
Q ss_pred CCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049 103 ALNDGLSLYESSHLRSANLWNRPHSPSLMAVFR 135 (153)
Q Consensus 103 P~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~ 135 (153)
|.+...+|++....||++|||++++ +++...+
T Consensus 417 ~~~~~~lrl~Ppl~it~~eid~~~~-~l~~~l~ 448 (451)
T PRK07678 417 AGYNNVLTLSPPLVISSEEIAFIVG-TLKTALE 448 (451)
T ss_pred cCCCCEEEEECCCcCCHHHHHHHHH-HHHHHHH
Confidence 9888999999999999999999998 7765543
No 42
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=96.98 E-value=0.0057 Score=52.64 Aligned_cols=88 Identities=10% Similarity=-0.004 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccC-CCCCCeEEEEcCCc----hHHHhcc----cccc------CCCCCCCCceEEE
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVYG-HRDSPVVPVLVFFF----SKVGQTS----IGLG------VEQTALNDGLSLY 111 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~-~s~SPIiPV~~g~~----~~~~~~a----~~i~------~PtVP~g~~RlRI 111 (153)
+++++++.++..++++.|.+.|+.+.. .+.++++++.+++. ....+.. +.+. .+..|.....+|+
T Consensus 282 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri 361 (416)
T PRK00011 282 KEYAQQVVKNAKALAEALAERGFRVVSGGTDNHLVLVDLRSKGLTGKEAEAALEEANITVNKNAVPFDPRSPFVTSGIRI 361 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCeeeecCCCCeEEEEeCcccCCCHHHHHHHHHHcCcEEccCcCCCCCCCCCCCCceEe
Confidence 778999999999999999999986532 24568999988632 2222222 2221 1122333456999
Q ss_pred EeeC----CCCHHHHHHHHHHHHHHHHh
Q psy5049 112 ESSH----LRSANLWNRPHSPSLMAVFR 135 (153)
Q Consensus 112 ~lsA----~HT~edId~L~~~~L~~~~~ 135 (153)
+.++ .+|++|++++++ +++.+..
T Consensus 362 ~~~~~~~~~~t~~di~~l~~-~l~~~~~ 388 (416)
T PRK00011 362 GTPAITTRGFKEAEMKEIAE-LIADVLD 388 (416)
T ss_pred cCHHHhhcCcCHHHHHHHHH-HHHHHHh
Confidence 6533 788999999999 8877644
No 43
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=96.92 E-value=0.0066 Score=50.07 Aligned_cols=81 Identities=16% Similarity=0.044 Sum_probs=58.1
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCC-chHHHhcc--------cc-ccCCCCCCCCceEEEEeeC
Q psy5049 46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFF-FSKVGQTS--------IG-LGVEQTALNDGLSLYESSH 115 (153)
Q Consensus 46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~-~~~~~~~a--------~~-i~~PtVP~g~~RlRI~lsA 115 (153)
..++++++.++..+|.+.|.+.|+.+. .+.++++.|.... ......+. .. +.+|. +...+||+++.
T Consensus 246 ~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~l~~~~~~gi~~~~~---~~~~lRi~~~~ 321 (338)
T cd06502 246 WLRRLRHDHEMARRLAEALEELGGLES-EVQTNIVLLDPVEANAVFVELSKEAIERRGEGVLFYAW---GEGGVRFVTHW 321 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcc-cccCCeEEEecCCccHHHHHHHHHHHHhhhCCEEEEec---CCCeEEEEeec
Confidence 456779999999999999999998653 4668888887743 22222221 12 23333 23789999999
Q ss_pred CCCHHHHHHHHHHHHH
Q psy5049 116 LRSANLWNRPHSPSLM 131 (153)
Q Consensus 116 ~HT~edId~L~~~~L~ 131 (153)
.||++|++++++ +++
T Consensus 322 ~~~~~~i~~~~~-~l~ 336 (338)
T cd06502 322 DTTEEDVDELLS-ALK 336 (338)
T ss_pred CCCHHHHHHHHH-HHh
Confidence 999999999887 654
No 44
>TIGR01885 Orn_aminotrans ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.
Probab=96.91 E-value=0.0044 Score=53.37 Aligned_cols=84 Identities=8% Similarity=0.022 Sum_probs=60.1
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCCcccC--CCCCCeEEEEcCCch---HHHhcc-----ccc-cCCCCCCCCceEEEEee
Q psy5049 46 GIRRISVLAHNTRYFRRKLNRLGLIVYG--HRDSPVVPVLVFFFS---KVGQTS-----IGL-GVEQTALNDGLSLYESS 114 (153)
Q Consensus 46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~--~s~SPIiPV~~g~~~---~~~~~a-----~~i-~~PtVP~g~~RlRI~ls 114 (153)
.++++++++++..+|++.|++.+..+.. .+..++++|.+.++. .+.++. ..+ ..| .+...+||+.+
T Consensus 305 ~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~g~g~~~~i~~~~~~~~~~~~~l~~~l~~~Gv~v~~---~~~~~lRi~p~ 381 (401)
T TIGR01885 305 EEKLAENAEKLGEIFRDQLKKLPKPIITEVRGRGLLNAIVIDESKTGRTAWDLCLKLKEKGLLAKP---THGNIIRLAPP 381 (401)
T ss_pred hccHHHHHHHHHHHHHHHHHhccCCceeEEeecCeeEEEEeccCcchhHHHHHHHHHHhCCEEEEe---cCCCEEEEeCC
Confidence 3468899999999999999988654321 245678888886642 333332 222 333 34679999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q psy5049 115 HLRSANLWNRPHSPSLMAV 133 (153)
Q Consensus 115 A~HT~edId~L~~~~L~~~ 133 (153)
..||++||+++++ +++..
T Consensus 382 l~~t~~~i~~~l~-~l~~~ 399 (401)
T TIGR01885 382 LVITEEQLDEGLE-IIKKV 399 (401)
T ss_pred ccCCHHHHHHHHH-HHHHH
Confidence 9999999999888 77654
No 45
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=96.85 E-value=0.0089 Score=51.13 Aligned_cols=88 Identities=13% Similarity=0.024 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcCC--chHHHhcc----ccccC---CCCC----CC-CceEEE
Q psy5049 47 IRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVFF--FSKVGQTS----IGLGV---EQTA----LN-DGLSLY 111 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g~--~~~~~~~a----~~i~~---PtVP----~g-~~RlRI 111 (153)
.+.+++..++..++++.|++. |+.+...+.++|+.+-+.+ .....+.. +.++. ++.+ .| .+.+||
T Consensus 295 ~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iRi 374 (401)
T PRK10874 295 NQAESWSRSLATLAEDALAKLPGFRSFRCQDSSLLAFDFAGVHHSDLVTLLAEYGIALRAGQHCAQPLLAALGVTGTLRA 374 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCcEEEEEECCcCHHHHHHHHHHCCcEEeccccchHHHHHHhCCCCEEEE
Confidence 345778888889999999876 7765444567788776643 22232222 22221 2211 11 368999
Q ss_pred EeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049 112 ESSHLRSANLWNRPHSPSLMAVFR 135 (153)
Q Consensus 112 ~lsA~HT~edId~L~~~~L~~~~~ 135 (153)
|++..+|++|||++++ +|+.+.+
T Consensus 375 S~~~~nt~edid~ll~-al~~~~~ 397 (401)
T PRK10874 375 SFAPYNTQSDVDALVN-AVDRALE 397 (401)
T ss_pred EecccCCHHHHHHHHH-HHHHHHH
Confidence 9999999999999999 8876544
No 46
>PRK03715 argD acetylornithine transaminase protein; Provisional
Probab=96.83 E-value=0.0055 Score=53.39 Aligned_cols=87 Identities=15% Similarity=0.121 Sum_probs=61.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHhC----CCcccCCCCCCeEEEEcCCc--hHHHhcc--c---cccCCCCCCCCceEEEEe
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRL----GLIVYGHRDSPVVPVLVFFF--SKVGQTS--I---GLGVEQTALNDGLSLYES 113 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~----G~~~~~~s~SPIiPV~~g~~--~~~~~~a--~---~i~~PtVP~g~~RlRI~l 113 (153)
+.++++++++++..+|++.|++. ++.. ..+.+++++|.+.++ ..+...+ . .+.-. +.+...+||++
T Consensus 295 ~~~~l~~~~~~~g~~l~~~L~~l~~~~~i~~-vrG~Glm~~i~l~~~~~~~~~~~~~~~~~~Gi~~~--~~~~~~lR~~p 371 (395)
T PRK03715 295 LAPGFLEGVRARGEYLKEKLLELSEERGLEG-ERGEGLLRALLLGKDIGPQIVEKARDMQPDGLLLN--APRPNLLRFMP 371 (395)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHhhcCCcCe-EEcceeEEEEEecCchHHHHHHHHHhccCCCEEEe--ecCCCEEEEeC
Confidence 45779999999999999999854 4321 135689999999874 2233222 1 22211 11336899999
Q ss_pred eCCCCHHHHHHHHHHHHHHHHh
Q psy5049 114 SHLRSANLWNRPHSPSLMAVFR 135 (153)
Q Consensus 114 sA~HT~edId~L~~~~L~~~~~ 135 (153)
+..||++|||++++ ++++..+
T Consensus 372 ~l~~t~~ei~~~~~-~l~~~l~ 392 (395)
T PRK03715 372 ALNVTTEEIDQMIA-MLRSVLD 392 (395)
T ss_pred CcccCHHHHHHHHH-HHHHHHH
Confidence 99999999999998 7766543
No 47
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=96.80 E-value=0.0062 Score=51.83 Aligned_cols=82 Identities=9% Similarity=-0.049 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCC--ccc--CCCCCCeEEEEcCCc--------hHHHhcc------ccccCCCCCCCCce
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGL--IVY--GHRDSPVVPVLVFFF--------SKVGQTS------IGLGVEQTALNDGL 108 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~--~~~--~~s~SPIiPV~~g~~--------~~~~~~a------~~i~~PtVP~g~~R 108 (153)
++++++++++..+|++.|++.+. ... ..+.++|+++.+.++ ..+..+. .....|. +...
T Consensus 312 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~---~~~~ 388 (413)
T cd00610 312 EGLLENAAELGEYLRERLRELAEKHPLVGDVRGRGLMIGIELVKDRATKPPDKELAAKIIKAALERGLLLRPS---GGNV 388 (413)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhCCcEEEeecCceEEEEEEecCCCcCCcchHHHHHHHHHHHHCCeEEeec---CCCE
Confidence 57889999999999999987633 111 124578999988764 2233332 2223333 2578
Q ss_pred EEEEeeCCCCHHHHHHHHHHHHHH
Q psy5049 109 SLYESSHLRSANLWNRPHSPSLMA 132 (153)
Q Consensus 109 lRI~lsA~HT~edId~L~~~~L~~ 132 (153)
+|++++..||++||+++++ .++.
T Consensus 389 lR~~~~~~~t~~~i~~~~~-~l~~ 411 (413)
T cd00610 389 IRLLPPLIITEEEIDEGLD-ALDE 411 (413)
T ss_pred EEEECCCcCCHHHHHHHHH-HHHH
Confidence 9999999999999999888 6654
No 48
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=96.79 E-value=0.0038 Score=55.33 Aligned_cols=80 Identities=11% Similarity=0.003 Sum_probs=52.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHh----CCCccc-------------CCCCCCeEEEEcCCchHHHhcc----------ccc
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNR----LGLIVY-------------GHRDSPVVPVLVFFFSKVGQTS----------IGL 97 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~----~G~~~~-------------~~s~SPIiPV~~g~~~~~~~~a----------~~i 97 (153)
+.+..+++++++..+|++.|++ .|+++. ..+.++|.|+...+.+....+. .++
T Consensus 320 ~~~~~~~~~~~~g~~l~~~l~~~~~~~g~~v~~~r~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~ 399 (433)
T PRK00615 320 REQGFYTQLSTLEQNFLSPIEEMIRSQGFPVSLVRYGSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAFSKGVYLSPS 399 (433)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHHHCCeeecCc
Confidence 3456799999999999777754 455431 1133456667666655444443 333
Q ss_pred cCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049 98 GVEQTALNDGLSLYESSHLRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 98 ~~PtVP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~ 134 (153)
.||+ ..+|+.||++|||++++ +++++.
T Consensus 400 ~~~~---------~~ls~~ht~~did~~~~-a~~~~~ 426 (433)
T PRK00615 400 PFEA---------SFLSSAHSMENLDYAQN-VLIDSL 426 (433)
T ss_pred cccc---------cceecCCCHHHHHHHHH-HHHHHH
Confidence 4444 28999999999999999 776554
No 49
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=96.78 E-value=0.013 Score=48.35 Aligned_cols=86 Identities=15% Similarity=-0.067 Sum_probs=58.4
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCCcccCCC--CCCe-EEEEcCCc-----hHHHhcc---ccccCCCCCCCCceEEEEee
Q psy5049 46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHR--DSPV-VPVLVFFF-----SKVGQTS---IGLGVEQTALNDGLSLYESS 114 (153)
Q Consensus 46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s--~SPI-iPV~~g~~-----~~~~~~a---~~i~~PtVP~g~~RlRI~ls 114 (153)
.++.+++++++..++++.|.+.|+.+.... .+++ +.+.+... ....+.. ..+..|..+.+...+||+.+
T Consensus 257 ~~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~~~~~iRis~~ 336 (355)
T TIGR03301 257 VPARIARYRRNRELLVDGLRALGFQPLLPERWQSPIIVSFLYPDDPDFDFDDFYQELKERGFVIYPGKLTLADTFRIGTI 336 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCeeecCCCCCCCcEEEEECCCCCcchHHHHHHHHHHCCEEEECCccccccEEEEecC
Confidence 367888999999999999999998653322 2443 45555431 1222222 33445554434478999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q psy5049 115 HLRSANLWNRPHSPSLMA 132 (153)
Q Consensus 115 A~HT~edId~L~~~~L~~ 132 (153)
..+|++|++++++ +|+.
T Consensus 337 ~~~~~~~i~~~~~-~l~~ 353 (355)
T TIGR03301 337 GEIDAADIERLLE-AIKD 353 (355)
T ss_pred CCCCHHHHHHHHH-HHHh
Confidence 9999999999988 7764
No 50
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=96.78 E-value=0.0066 Score=50.35 Aligned_cols=84 Identities=7% Similarity=-0.124 Sum_probs=57.3
Q ss_pred chHHHHHHHHHHHHHHHHHHhC-CCcccCCC-----CCCeEEEEcCC-----chHHHhcc-------ccccCCCCCCC--
Q psy5049 46 GIRRISVLAHNTRYFRRKLNRL-GLIVYGHR-----DSPVVPVLVFF-----FSKVGQTS-------IGLGVEQTALN-- 105 (153)
Q Consensus 46 ~~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s-----~SPIiPV~~g~-----~~~~~~~a-------~~i~~PtVP~g-- 105 (153)
-++.+++.++|..++++.|.+. |+.+.+.. ..+++|+.+.+ ..+..+.. ....+|.++..
T Consensus 230 ~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gI~~~~~~~~~~~~~~~ 309 (352)
T cd00616 230 LDEIIARRREIAERYKELLADLPGIRLPDVPPGVKHSYHLYVIRLDPEAGESRDELIEALKEAGIETRVHYPPLHHQPPY 309 (352)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceeeEEEEEEECCcCCCCHHHHHHHHHHCCCCeeeecCccccCHhh
Confidence 3667788899999999999984 66654322 24689998863 22333322 22233433221
Q ss_pred ------------------CceEEEEeeCCCCHHHHHHHHHHHH
Q psy5049 106 ------------------DGLSLYESSHLRSANLWNRPHSPSL 130 (153)
Q Consensus 106 ------------------~~RlRI~lsA~HT~edId~L~~~~L 130 (153)
+..+|++++..+|++||+++++ +|
T Consensus 310 ~~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~-~l 351 (352)
T cd00616 310 KKLLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIE-AL 351 (352)
T ss_pred hhccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHH-Hh
Confidence 2589999999999999999988 55
No 51
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=96.72 E-value=0.015 Score=49.54 Aligned_cols=84 Identities=10% Similarity=-0.080 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCc-hHHHhcc-------ccccCCCCCCCCceEEEEeeCCCC
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFF-SKVGQTS-------IGLGVEQTALNDGLSLYESSHLRS 118 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~-~~~~~~a-------~~i~~PtVP~g~~RlRI~lsA~HT 118 (153)
.+.++.++++..++.+.|++.|+.+. .+.+..+.+-++.+ ..+..++ ..+++|.++.+...+||++. +
T Consensus 273 ~~~~~~~~~~r~~~~~~L~~~g~~~~-p~~~~f~~~~~~~~~~~a~~l~~~l~~~Gi~v~~p~~~~~~~~iRis~~---~ 348 (369)
T PRK08153 273 AEVVGKIAAARDRIAAIARANGLTPL-PSATNFVAIDCGRDGAFARAVLDGLIARDIFVRMPGVAPLDRCIRVSCG---P 348 (369)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCccC-CCcCcEEEEECCCCcccHHHHHHHHHHCCeEEeeCCCCCCCCeEEEecC---C
Confidence 44567777888888888998888653 46678877766532 2222222 55577887766789999987 7
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy5049 119 ANLWNRPHSPSLMAVFR 135 (153)
Q Consensus 119 ~edId~L~~~~L~~~~~ 135 (153)
++|++++++ +++++.+
T Consensus 349 ~~~~~~~~~-al~~~~~ 364 (369)
T PRK08153 349 DEELDLFAE-ALPEALE 364 (369)
T ss_pred HHHHHHHHH-HHHHHHH
Confidence 999999999 8876654
No 52
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=96.66 E-value=0.016 Score=49.47 Aligned_cols=91 Identities=16% Similarity=0.077 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhC-CCcccCCC----CCCeEEEEcCCc--hHHHhcc----ccccC---CCCC----C-CCc
Q psy5049 47 IRRISVLAHNTRYFRRKLNRL-GLIVYGHR----DSPVVPVLVFFF--SKVGQTS----IGLGV---EQTA----L-NDG 107 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s----~SPIiPV~~g~~--~~~~~~a----~~i~~---PtVP----~-g~~ 107 (153)
+..+++..+..+++++.|.+. |+.+.+.. .++++.+.+.+. ....+.. +.++. .+.| . ...
T Consensus 294 ~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~~~~~ 373 (403)
T TIGR01979 294 ENIEAHEHELTAYALERLGEIPGLRIYGPRDAEDRGGIISFNVEGVHPHDVGTILDEEGIAVRSGHHCAQPLMRRFGVPA 373 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccccCceEEEEeCCcCHHHHHHHHhhCCEEEcchhhhhHHHHHHhCCCC
Confidence 466788889999999999876 66654322 267888876432 2222221 22221 1111 0 135
Q ss_pred eEEEEeeCCCCHHHHHHHHHHHHHHHHhcCC
Q psy5049 108 LSLYESSHLRSANLWNRPHSPSLMAVFRGGG 138 (153)
Q Consensus 108 RlRI~lsA~HT~edId~L~~~~L~~~~~~~~ 138 (153)
.+||+++..+|++|++++++ +|+.+.+.+|
T Consensus 374 ~iRiS~~~~~t~~di~~l~~-~l~~~~~~~~ 403 (403)
T TIGR01979 374 TCRASFYIYNTEEDIDALVE-ALKKVRKFFG 403 (403)
T ss_pred EEEEEeccCCCHHHHHHHHH-HHHHHHHHhC
Confidence 79999999999999999999 8887776543
No 53
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=96.60 E-value=0.018 Score=51.51 Aligned_cols=83 Identities=6% Similarity=-0.004 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcC---------CchHHHhcc-------ccccCCCCCCCCceEEE
Q psy5049 48 RRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVF---------FFSKVGQTS-------IGLGVEQTALNDGLSLY 111 (153)
Q Consensus 48 ~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g---------~~~~~~~~a-------~~i~~PtVP~g~~RlRI 111 (153)
+..++..++++|++++|.+. +.+. .+...+..+++. +...+.+.. ..+.+|.++ ...+|+
T Consensus 349 ~~a~~~~~~a~~l~~~L~~~-~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~--~~~l~i 424 (481)
T PRK04366 349 EVSEDAVLNANYLKARLKDI-YDLP-YDRPCMHEFVLSGKKLKETGVRTLDIAKRLLDYGFHPPTIYFPLIV--PEALMI 424 (481)
T ss_pred HHHHHHHHHHHHHHHHhHhh-Cccc-CCCCeeEEEEEECccccccCCCHHHHHHHHHHCCccCCcccccccc--CCeEEE
Confidence 34567788999999999987 5442 222222233332 222222222 333567665 468999
Q ss_pred EeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049 112 ESSHLRSANLWNRPHSPSLMAVFR 135 (153)
Q Consensus 112 ~lsA~HT~edId~L~~~~L~~~~~ 135 (153)
+++..+|+||||++++ +|+.+.+
T Consensus 425 s~~e~~t~edid~l~~-~l~~i~~ 447 (481)
T PRK04366 425 EPTETESKETLDAFIA-AMKQIAE 447 (481)
T ss_pred cccCCCCHHHHHHHHH-HHHHHHH
Confidence 9999999999999999 8876654
No 54
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=96.57 E-value=0.011 Score=52.74 Aligned_cols=92 Identities=7% Similarity=-0.084 Sum_probs=65.2
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHhCC--Cc-cc--CCCCCCeEEEEcCCchHHHhcc------ccccCCCCCCCCceE
Q psy5049 41 ICFISGIRRISVLAHNTRYFRRKLNRLG--LI-VY--GHRDSPVVPVLVFFFSKVGQTS------IGLGVEQTALNDGLS 109 (153)
Q Consensus 41 l~~~~~~~rr~~L~~ni~~fr~~L~~~G--~~-~~--~~s~SPIiPV~~g~~~~~~~~a------~~i~~PtVP~g~~Rl 109 (153)
+...+.+++.++++++..+|++.|+++. +. .. ..+..+++.|.+.+++.+..+. -.+..|+. .+..++
T Consensus 347 L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~VrG~Gl~~giel~~~~~~~~i~~~l~~~Gvl~~~~~-~~~~~l 425 (459)
T PRK11522 347 INVLLEQNLPAQAEQKGDYLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNEIGYNFASEMFRQRVLVAGTL-NNAKTI 425 (459)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEeceeEEEEEecCchHHHHHHHHHHHCCeEEEecC-CCCCEE
Confidence 3333456789999999999999998652 32 11 1245789999998765444433 22234443 356899
Q ss_pred EEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049 110 LYESSHLRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 110 RI~lsA~HT~edId~L~~~~L~~~~ 134 (153)
|++.+..||++|||++++ +++.+.
T Consensus 426 r~~Ppl~~t~~~id~~l~-~l~~~l 449 (459)
T PRK11522 426 RIEPPLTLTIEQCEQVLK-AARKAL 449 (459)
T ss_pred EEECCccCCHHHHHHHHH-HHHHHH
Confidence 999999999999999998 776554
No 55
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=96.57 E-value=0.022 Score=48.66 Aligned_cols=88 Identities=11% Similarity=0.019 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcCC--chHHHhcc----cccc---CCCCC----CC-CceEEE
Q psy5049 47 IRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVFF--FSKVGQTS----IGLG---VEQTA----LN-DGLSLY 111 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g~--~~~~~~~a----~~i~---~PtVP----~g-~~RlRI 111 (153)
.+.+++..+...++++.|.+. |+.+.+...++|+.+-+.+ .+...+.. +.++ ..+.+ .| .+.+||
T Consensus 292 ~~i~~~~~~l~~~l~~~l~~l~g~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iRv 371 (398)
T TIGR03392 292 AAAEAWSVSLADLAEERLAQLPGFRSFRCPGSSLLAFDFAGVHHSDLAALLAESGIALRAGQHCAQPLMAALGVSGTLRA 371 (398)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCCcEEEEEeCCcCHHHHHHHHHhCCEEEecCccchHHHHHHhCCCCEEEE
Confidence 466788888999999999876 7665444557788766543 22232222 2221 11101 01 368999
Q ss_pred EeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049 112 ESSHLRSANLWNRPHSPSLMAVFR 135 (153)
Q Consensus 112 ~lsA~HT~edId~L~~~~L~~~~~ 135 (153)
+++..+|++|++++++ +|+.+.+
T Consensus 372 S~~~~~t~~ei~~l~~-~l~~~~~ 394 (398)
T TIGR03392 372 SFAPYNTQQDVDALVD-AVGAALE 394 (398)
T ss_pred EeeccCCHHHHHHHHH-HHHHHHH
Confidence 9999999999999999 8876544
No 56
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=96.45 E-value=0.023 Score=49.49 Aligned_cols=86 Identities=12% Similarity=-0.028 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcC-CchHHHhcc----cc--c-cCCCCCCCCceEEEEeeCCC
Q psy5049 47 IRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVF-FFSKVGQTS----IG--L-GVEQTALNDGLSLYESSHLR 117 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g-~~~~~~~~a----~~--i-~~PtVP~g~~RlRI~lsA~H 117 (153)
++.++++.++..++.+.|++. |+.+........+-+-++ +..+..+.. .. + ..|..|.....+|++++..+
T Consensus 351 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~v~~~~~~~~~~~~L~~~gi~~~~~~~~~~~~~~~~~rvs~~~~~ 430 (447)
T PRK00451 351 RELAEQNHQKAHYLAERLAEIGGVELFDGPFFNEFVVRLPKPAEEVNEALLEKGILGGYDLGRYYPELGNHLLVCVTEKR 430 (447)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCEEecCCCeEEEEEEecCCCHHHHHHHHHhcCCCCCcccccccCCcCCEEEEecCCCC
Confidence 677889999999999999987 455531111121112222 223323222 11 1 23333433568999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q psy5049 118 SANLWNRPHSPSLMAV 133 (153)
Q Consensus 118 T~edId~L~~~~L~~~ 133 (153)
|+|||+++++ +|+.+
T Consensus 431 t~e~i~~l~~-~L~~~ 445 (447)
T PRK00451 431 TKEDIDALVA-ALGEV 445 (447)
T ss_pred CHHHHHHHHH-HHHHH
Confidence 9999999999 88764
No 57
>KOG1359|consensus
Probab=96.38 E-value=0.007 Score=52.54 Aligned_cols=65 Identities=25% Similarity=0.333 Sum_probs=47.2
Q ss_pred hHHHHHHHhHHHHHHHhhhcccEEeecCCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEE
Q psy5049 2 RLISVLAQNTRYFRRKLNRLGLILYVLFQAQTKPPRSHCICFISGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVP 81 (153)
Q Consensus 2 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~~~l~~~~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiP 81 (153)
+.+.+..-|+..||+.|...||+|+|. .+|+..- ..++. +.+..+.+.|-+.|+-+++-+ .|+||
T Consensus 316 ~~i~~~~a~~qrfr~~me~aGftIsg~----~hPI~pv----~lGda------~lA~~~ad~lLk~Gi~Vigfs-~PvVP 380 (417)
T KOG1359|consen 316 KEIQSRQANTQRFREFMEAAGFTISGA----SHPICPV----MLGDA------RLASKMADELLKRGIYVIGFS-YPVVP 380 (417)
T ss_pred HHHHHHHHHHHHHHHHHHhcCceecCC----CCCccce----ecccH------HHHHHHHHHHHhcCceEEeec-CCcCC
Confidence 467888999999999999999999987 5774111 12333 234667788888998876544 67655
No 58
>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional
Probab=96.37 E-value=0.051 Score=46.78 Aligned_cols=89 Identities=8% Similarity=-0.158 Sum_probs=62.3
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCCcc-cCC--CCC-CeEEEEcCCch---HHHhcc---ccccCCCCCCCCceEEEEeeC
Q psy5049 46 GIRRISVLAHNTRYFRRKLNRLGLIV-YGH--RDS-PVVPVLVFFFS---KVGQTS---IGLGVEQTALNDGLSLYESSH 115 (153)
Q Consensus 46 ~~~rr~~L~~ni~~fr~~L~~~G~~~-~~~--s~S-PIiPV~~g~~~---~~~~~a---~~i~~PtVP~g~~RlRI~lsA 115 (153)
-+.+.++.+++..++++.|.++|+.. ... ..| +|+++.+.+.. ...... ..+.|+... ..+.+|+++..
T Consensus 260 ~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~v~sf~~~~~~~~~~~~~~~~~~Gi~~~~~~~-~~g~vRiS~~~ 338 (360)
T PRK05355 260 VAAMEKRNQEKAALLYDAIDSSDFYRNPVAPEDRSRMNVPFTLADEELDKKFLAEAKAAGLVGLKGHR-SVGGMRASIYN 338 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccCCChhhcCCcEEEEEcCChHHHHHHHHHHHHCCCcccCCCC-ccCcEEEECCC
Confidence 47888899999999999999998632 111 235 46888776642 221221 222355542 24689999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhc
Q psy5049 116 LRSANLWNRPHSPSLMAVFRG 136 (153)
Q Consensus 116 ~HT~edId~L~~~~L~~~~~~ 136 (153)
.+|+||||+|++ +|+.+.+.
T Consensus 339 ~nt~eei~~l~~-~l~~~~~~ 358 (360)
T PRK05355 339 AMPLEGVQALVD-FMKEFERR 358 (360)
T ss_pred CCCHHHHHHHHH-HHHHHHHh
Confidence 999999999999 88876654
No 59
>PRK10534 L-threonine aldolase; Provisional
Probab=96.28 E-value=0.047 Score=45.37 Aligned_cols=78 Identities=14% Similarity=0.075 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCC--chHHHhcc----ccccCCCCCCCCceEEEEeeCCCCHHH
Q psy5049 48 RRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFF--FSKVGQTS----IGLGVEQTALNDGLSLYESSHLRSANL 121 (153)
Q Consensus 48 ~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~--~~~~~~~a----~~i~~PtVP~g~~RlRI~lsA~HT~ed 121 (153)
+.+++.+++..++.+.|.+.|+.+. .+.++.+.+-+++ .....+.. +.++ |. +.+|++.+..+|+|+
T Consensus 247 ~~~~~~~~~r~~l~~~L~~~g~~~~-~~~~nfv~~~~~~~~~~~~~~~l~~~gi~v~-~~-----~~~rl~~~~r~t~e~ 319 (333)
T PRK10534 247 ARLQEDHDNAAWLAEQLREAGADVM-RQDTNMLFVRVGEEQAAALGEYMRERNVLIN-AS-----PIVRLVTHLDVSREQ 319 (333)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccC-CCCceEEEEECCchhHHHHHHHHHHcCeeec-CC-----ceEEEEEEeCCCHHH
Confidence 4455566677899999999999874 4678888888763 22333222 3332 32 268999998999999
Q ss_pred HHHHHHHHHHHH
Q psy5049 122 WNRPHSPSLMAV 133 (153)
Q Consensus 122 Id~L~~~~L~~~ 133 (153)
++++++ ++..+
T Consensus 320 ~~~~~~-~l~~~ 330 (333)
T PRK10534 320 LAEVVA-HWRAF 330 (333)
T ss_pred HHHHHH-HHHHH
Confidence 999998 77654
No 60
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=96.28 E-value=0.023 Score=48.82 Aligned_cols=86 Identities=14% Similarity=0.087 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhC-CCcccCC-CCCCeEEEEcCCc--hHHHhcc----cccc-----------CCCCCCCCc
Q psy5049 47 IRRISVLAHNTRYFRRKLNRL-GLIVYGH-RDSPVVPVLVFFF--SKVGQTS----IGLG-----------VEQTALNDG 107 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~-s~SPIiPV~~g~~--~~~~~~a----~~i~-----------~PtVP~g~~ 107 (153)
+..++++++...++++.|.+. |+.+.+. ..++|+.+.+... ..+.... +.++ ...++ +
T Consensus 300 ~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~~~---~ 376 (406)
T PRK09295 300 NNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVP---A 376 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCceEEEEEECCcCHHHHHHHHHhCCeEEeccccchHHHHHHHCCC---C
Confidence 566788888999999999876 5555432 2367888876532 2222222 1111 11112 5
Q ss_pred eEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Q psy5049 108 LSLYESSHLRSANLWNRPHSPSLMAVFRG 136 (153)
Q Consensus 108 RlRI~lsA~HT~edId~L~~~~L~~~~~~ 136 (153)
.+|++++..+|+||||++++ +|+.+.+.
T Consensus 377 ~iRiS~~~ynt~~did~l~~-~l~~i~~~ 404 (406)
T PRK09295 377 MCRASLAMYNTHEEVDRLVA-GLQRIHRL 404 (406)
T ss_pred EEEEEccCCCCHHHHHHHHH-HHHHHHHH
Confidence 79999999999999999999 88877553
No 61
>TIGR01366 serC_3 phosphoserine aminotransferase, putative. This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.
Probab=96.27 E-value=0.047 Score=46.90 Aligned_cols=88 Identities=10% Similarity=-0.089 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCC-cccCCC---CCCeEEEEcCCc----hHHHhcc----ccccCCCCCCCCceEEEEee
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGL-IVYGHR---DSPVVPVLVFFF----SKVGQTS----IGLGVEQTALNDGLSLYESS 114 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~-~~~~~s---~SPIiPV~~g~~----~~~~~~a----~~i~~PtVP~g~~RlRI~ls 114 (153)
+.+.++.++...++++.+.+.|+ ..+... .|++++++...+ +...+.. +.+..+--+.+..-+||+++
T Consensus 260 e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~v~~v~~~~g~~~~~v~~~L~~~gI~i~~~~~~l~~~~vRis~~ 339 (361)
T TIGR01366 260 DWAVARTADSSSRLYSWAQERPYATPFVTDPGKRSQVVGTIDFVDDIDAATVAKILRANGIVDTEPYRKLGRNQLRVAMF 339 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcccceEEEECCCccCHHHHHHHHHHCCCeeccCccccCCCcEEEEcC
Confidence 55568889999999999999984 333222 266666555321 2222222 33333322334567999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHh
Q psy5049 115 HLRSANLWNRPHSPSLMAVFR 135 (153)
Q Consensus 115 A~HT~edId~L~~~~L~~~~~ 135 (153)
..+|++||+++++ +|+.+.+
T Consensus 340 ~~~t~~di~~l~~-al~~~~~ 359 (361)
T TIGR01366 340 PAIDPDDVEALTE-CVDWVVE 359 (361)
T ss_pred CCCCHHHHHHHHH-HHHHHHh
Confidence 9999999999999 8877644
No 62
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=96.25 E-value=0.056 Score=46.39 Aligned_cols=88 Identities=5% Similarity=-0.196 Sum_probs=60.9
Q ss_pred chHHHHHHHHHHHHHHHHHHhC-CCcccCC---CCC-CeEEEEcCCc---hHHHhcc---ccccCCCCCCCCceEEEEee
Q psy5049 46 GIRRISVLAHNTRYFRRKLNRL-GLIVYGH---RDS-PVVPVLVFFF---SKVGQTS---IGLGVEQTALNDGLSLYESS 114 (153)
Q Consensus 46 ~~~rr~~L~~ni~~fr~~L~~~-G~~~~~~---s~S-PIiPV~~g~~---~~~~~~a---~~i~~PtVP~g~~RlRI~ls 114 (153)
-+.+.++.+++..++++.|.++ |+..... ..+ +|+++.+.+. .+..... ..+.++.... .+.+|+++.
T Consensus 249 ~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~v~sf~~~~~~~~~~~~~~~~~~Gi~~~~~~~~-~g~vRvS~~ 327 (349)
T TIGR01364 249 VKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNVVFTLGNEELEKRFLKEAEERGLVSLKGHRS-VGGMRASIY 327 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeeccCCCHHHcCCeEEEEecCChhHhHHHHHHHHHCCCcccCCccc-cCeeEEECc
Confidence 5788888999999999999999 4633221 235 4677776643 2221221 2245555331 358999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHh
Q psy5049 115 HLRSANLWNRPHSPSLMAVFR 135 (153)
Q Consensus 115 A~HT~edId~L~~~~L~~~~~ 135 (153)
-.+|+||||++++ +|+.+.+
T Consensus 328 ~~nt~edid~l~~-al~~~~~ 347 (349)
T TIGR01364 328 NAMPLEGVQALVD-FMKEFQK 347 (349)
T ss_pred CCCCHHHHHHHHH-HHHHHHH
Confidence 9999999999999 8887654
No 63
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=96.25 E-value=0.06 Score=45.87 Aligned_cols=86 Identities=8% Similarity=-0.129 Sum_probs=58.6
Q ss_pred chHHHHHHHHHHHHHHHHHHhC-CCc-ccC--CCCC-CeEEEEcCCc---hHHHhcc---ccccCCCCCCCCceEEEEee
Q psy5049 46 GIRRISVLAHNTRYFRRKLNRL-GLI-VYG--HRDS-PVVPVLVFFF---SKVGQTS---IGLGVEQTALNDGLSLYESS 114 (153)
Q Consensus 46 ~~~rr~~L~~ni~~fr~~L~~~-G~~-~~~--~s~S-PIiPV~~g~~---~~~~~~a---~~i~~PtVP~g~~RlRI~ls 114 (153)
-+.+.++.+++..++++.|.++ |+. ... ...+ +|+++-+.+. .+..... ..+.|+.-. ..+.+|+++.
T Consensus 257 ~e~i~~~~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~vvsf~~~~~~l~~~~~~~~~r~G~~~~~~~~-~~g~vR~S~~ 335 (355)
T cd00611 257 VEAMEKRNRQKAQLLYDTIDNSNGFYRGPVDKRARSRMNVPFRLGKEELEKEFLKEAEAAGMIGLKGHR-SVGGIRASIY 335 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccccccCCCHHHcCceEEEEEcCChhhhHHHHHHHHHCCCcccCCCc-ccCeEEEEcc
Confidence 4677888999999999999998 752 111 1235 4588777662 2222222 222444422 1368999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q psy5049 115 HLRSANLWNRPHSPSLMAV 133 (153)
Q Consensus 115 A~HT~edId~L~~~~L~~~ 133 (153)
..+|+||||+|++ +|+.+
T Consensus 336 ~~nt~edi~~l~~-al~~~ 353 (355)
T cd00611 336 NALSLEGVQALAD-FMKEF 353 (355)
T ss_pred CCCCHHHHHHHHH-HHHHH
Confidence 9999999999999 88764
No 64
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=96.19 E-value=0.023 Score=49.09 Aligned_cols=86 Identities=9% Similarity=0.097 Sum_probs=57.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHhCC--CcccC--CCCCCeEEEEcCCc--hHHHhcc-----ccc-cCCCCCCCCceEEEE
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRLG--LIVYG--HRDSPVVPVLVFFF--SKVGQTS-----IGL-GVEQTALNDGLSLYE 112 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~G--~~~~~--~s~SPIiPV~~g~~--~~~~~~a-----~~i-~~PtVP~g~~RlRI~ 112 (153)
..++++++++++..+|++.|++++ +.+.+ .+...++++.+.+. ..+..++ ..+ ..| .|...+|++
T Consensus 296 ~~~~l~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~l~~~Gv~~~~---~g~~~lR~~ 372 (397)
T TIGR03246 296 NTPELLAGVKQRHDLFVDGLEKINARYNVFSEIRGKGLLIGAVLTEAYQGKAKQFVNAAAEEGVIALI---AGPNVVRFA 372 (397)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHhcCCCeEeeecCceEEEEEEcCchhhHHHHHHHHHHHCCeEEee---cCCCEEEEe
Confidence 456789999999999999999865 22111 13345667766442 2233332 222 222 355799999
Q ss_pred eeCCCCHHHHHHHHHHHHHHHH
Q psy5049 113 SSHLRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 113 lsA~HT~edId~L~~~~L~~~~ 134 (153)
++..||++||+++++ .++.+.
T Consensus 373 p~~~~t~~~i~~~~~-~l~~~l 393 (397)
T TIGR03246 373 PSLVISDDDIDEGLA-RFERAI 393 (397)
T ss_pred CCCCCCHHHHHHHHH-HHHHHH
Confidence 999999999999998 776544
No 65
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=96.19 E-value=0.027 Score=48.18 Aligned_cols=85 Identities=7% Similarity=-0.051 Sum_probs=59.0
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCCcccC--CCCCCeEEEEcCCchHHHhcc------ccccCCCCCCCCceEEEEeeCCC
Q psy5049 46 GIRRISVLAHNTRYFRRKLNRLGLIVYG--HRDSPVVPVLVFFFSKVGQTS------IGLGVEQTALNDGLSLYESSHLR 117 (153)
Q Consensus 46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~--~s~SPIiPV~~g~~~~~~~~a------~~i~~PtVP~g~~RlRI~lsA~H 117 (153)
..+.++++++...+|++.|++.++...+ .+...++.|.+..+ .+..+. ..+..|. +...+|++++..|
T Consensus 301 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~v~g~g~~~~i~~~~~-~~~~~~~~l~~~Gv~~~~~---~~~~iR~~p~~~~ 376 (398)
T PRK03244 301 SEGLLENAERLGEQLRAGIEALGHPLVDHVRGRGLLLGIVLTAP-VAKAVEAAAREAGFLVNAV---APDVIRLAPPLII 376 (398)
T ss_pred hccHHHHHHHHHHHHHHHHHhcCCCceeeEeeccEEEEEEEecc-HHHHHHHHHHHCCeEEeec---CCCEEEEECCCcC
Confidence 4578899999999999999987653211 23467888877432 222221 2223332 3478999999999
Q ss_pred CHHHHHHHHHHHHHHHHh
Q psy5049 118 SANLWNRPHSPSLMAVFR 135 (153)
Q Consensus 118 T~edId~L~~~~L~~~~~ 135 (153)
|++||+++++ +++.+.+
T Consensus 377 t~~~i~~~~~-~l~~~l~ 393 (398)
T PRK03244 377 TDAQVDAFVA-ALPAILD 393 (398)
T ss_pred CHHHHHHHHH-HHHHHHH
Confidence 9999999998 8876654
No 66
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=96.19 E-value=0.032 Score=46.99 Aligned_cols=82 Identities=10% Similarity=0.089 Sum_probs=54.6
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCCcccC---CCCCCeEEEEcCCc-hHHHhcc----ccccCCCCCCCCceEEEEeeCCC
Q psy5049 46 GIRRISVLAHNTRYFRRKLNRLGLIVYG---HRDSPVVPVLVFFF-SKVGQTS----IGLGVEQTALNDGLSLYESSHLR 117 (153)
Q Consensus 46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~---~s~SPIiPV~~g~~-~~~~~~a----~~i~~PtVP~g~~RlRI~lsA~H 117 (153)
..+.+++++++..++++.|.+.+..... .+.+.++.+.+.++ ....+.. +.+. | .+...+|++++..|
T Consensus 288 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~Gv~v~-~---~~~~~lRi~~~~~~ 363 (379)
T TIGR00707 288 KERLLENVKEKGDYFKERLEELGKNYPNKEVRGKGLMLGIELEAPCKDIVKKALEKGLLVN-C---AGPKVLRFLPPLII 363 (379)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhCCCCccccCceEEEEEecCcHHHHHHHHHHCCcEEe-e---CCCCEEEEECCCcC
Confidence 4568899999999999999876543311 12345566655433 2222222 2233 3 24578999999999
Q ss_pred CHHHHHHHHHHHHHH
Q psy5049 118 SANLWNRPHSPSLMA 132 (153)
Q Consensus 118 T~edId~L~~~~L~~ 132 (153)
|+|+++++++ +++.
T Consensus 364 t~~~i~~~~~-~l~~ 377 (379)
T TIGR00707 364 TKEEIDEAVS-ALEE 377 (379)
T ss_pred CHHHHHHHHH-HHHH
Confidence 9999999888 7764
No 67
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=96.18 E-value=0.056 Score=45.14 Aligned_cols=84 Identities=10% Similarity=-0.039 Sum_probs=56.4
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCC--chHHHhcc----ccccCCCCCCCCceEEEEeeCCCCH
Q psy5049 46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFF--FSKVGQTS----IGLGVEQTALNDGLSLYESSHLRSA 119 (153)
Q Consensus 46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~--~~~~~~~a----~~i~~PtVP~g~~RlRI~lsA~HT~ 119 (153)
.++.+++++++..++.+.|++.|+.+. .+.+.++.+-+.+ .....+.. ..+++-..|.+...+||+++ ++
T Consensus 262 ~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRis~~---~~ 337 (353)
T PRK05387 262 FEETRAKVIATRERLVEELEALGFEVL-PSKANFVFARHPSHDAAELAAKLRERGIIVRHFNKPRIDQFLRITIG---TD 337 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCeEC-CCcCcEEEEECCCCCHHHHHHHHHHCCEEEEECCCCCCCCeEEEEeC---CH
Confidence 456788999999999999999998653 3556676655542 22222222 33332222445678999986 67
Q ss_pred HHHHHHHHHHHHHHH
Q psy5049 120 NLWNRPHSPSLMAVF 134 (153)
Q Consensus 120 edId~L~~~~L~~~~ 134 (153)
++++++++ +|+.+.
T Consensus 338 ~~~~~~~~-~L~~~~ 351 (353)
T PRK05387 338 EEMEALVD-ALKEIL 351 (353)
T ss_pred HHHHHHHH-HHHHHh
Confidence 99999998 777654
No 68
>PLN02721 threonine aldolase
Probab=96.16 E-value=0.053 Score=44.97 Aligned_cols=83 Identities=14% Similarity=0.015 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHhC-CCcc-cCCCCCCeEEEEcCCc-----hHHHhcc---ccccCCCCCCCCceEEEEeeCCC
Q psy5049 48 RRISVLAHNTRYFRRKLNRL-GLIV-YGHRDSPVVPVLVFFF-----SKVGQTS---IGLGVEQTALNDGLSLYESSHLR 117 (153)
Q Consensus 48 ~rr~~L~~ni~~fr~~L~~~-G~~~-~~~s~SPIiPV~~g~~-----~~~~~~a---~~i~~PtVP~g~~RlRI~lsA~H 117 (153)
++.++.+++..++.+.|.+. |+.+ ...+.++++.+-+.+. ....+.. ..... |.+...+|++++..+
T Consensus 258 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~v~---~~~~~~lR~~~~~~~ 334 (353)
T PLN02721 258 PKLEDDHKKAKLLAEGLNQIKGLRVNVAAVETNIVYFDITDGSRITAEKLCKSLEEHGVLLM---PGNSSRIRVVTHHQI 334 (353)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcEEecCCccceEEEEEccCCccccHHHHHHHHHhCCcEEe---cCCCceEEEEecCcC
Confidence 34455577888999999987 5532 2334466766665431 1222221 22222 235679999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy5049 118 SANLWNRPHSPSLMAVF 134 (153)
Q Consensus 118 T~edId~L~~~~L~~~~ 134 (153)
|++|++++++ +|+++.
T Consensus 335 ~~~~i~~~~~-~l~~~~ 350 (353)
T PLN02721 335 SDSDVQYTLS-CFQQAA 350 (353)
T ss_pred CHHHHHHHHH-HHHHHh
Confidence 9999999998 777654
No 69
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=96.15 E-value=0.044 Score=47.81 Aligned_cols=116 Identities=11% Similarity=0.079 Sum_probs=76.4
Q ss_pred HHHHhHHHHHHH----hhhcccEEeecCCCCCCCCcccccccccchHHHHHHHHH--HHHHHHHHH-hCCCcccCCCCCC
Q psy5049 6 VLAQNTRYFRRK----LNRLGLILYVLFQAQTKPPRSHCICFISGIRRISVLAHN--TRYFRRKLN-RLGLIVYGHRDSP 78 (153)
Q Consensus 6 ~~~~~~~~~~~~----l~~~g~~~~~~~~~~~~p~~~~~l~~~~~~~rr~~L~~n--i~~fr~~L~-~~G~~~~~~s~SP 78 (153)
++++.-+|+|+. |+++||.. -|+ ..--+..-|++..-++| ++++.+.+. ..|+.+...+++.
T Consensus 215 ~~~~~a~~~rK~~Ggl~~k~r~la--------A~~---~~~l~~~~~~~~~~Han~mA~~La~~~~~~~G~~~~~~~~tN 283 (342)
T COG2008 215 DFAKRARRWRKRAGGLMRKARFLA--------AQG---LYALEDDVWRLAADHANAMAARLAEGLEAKPGVKLAFPVETN 283 (342)
T ss_pred HHHHHHHHHHHHhcccHhhhhHHH--------HHH---HHHHhccHHHHHHHHHHHHHHHHHHhhhhcCCceeccCCccc
Confidence 455555666654 45556551 121 12334556999999999 999999999 5598876557899
Q ss_pred eEEEEcCCchH-HHhccccccCCCC--CCCCceEEEEeeCCCCHHHHHHHHHHHHHHH
Q psy5049 79 VVPVLVFFFSK-VGQTSIGLGVEQT--ALNDGLSLYESSHLRSANLWNRPHSPSLMAV 133 (153)
Q Consensus 79 IiPV~~g~~~~-~~~~a~~i~~PtV--P~g~~RlRI~lsA~HT~edId~L~~~~L~~~ 133 (153)
++.+.+.+... .........|-.| +.+...+|++.|=+-|+||||++++ .++.+
T Consensus 284 ~vf~~l~~~~i~~l~~~~~~~~~~~~~~~~~~~vRfvts~a~~~edv~~~~~-~~~~~ 340 (342)
T COG2008 284 MVFVRLPESAIEALRLAGALFYRGVLIGAHGEIVRFVTSWATSEEDVDELVA-AIKAL 340 (342)
T ss_pred EEEEECChHHHHHHHhhchhheeeeeccCCCceEEEEeeccCCHHHHHHHHH-HHHHh
Confidence 99998876432 2222222333311 2222689999999999999999887 65543
No 70
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=96.15 E-value=0.035 Score=47.84 Aligned_cols=85 Identities=9% Similarity=-0.146 Sum_probs=56.5
Q ss_pred chHHHHHHHHHHHHHHHHHHhC-----CCcccCCC----CCCeEEEEcC-CchHHHhcc--ccccCCCCCCCCceEEEEe
Q psy5049 46 GIRRISVLAHNTRYFRRKLNRL-----GLIVYGHR----DSPVVPVLVF-FFSKVGQTS--IGLGVEQTALNDGLSLYES 113 (153)
Q Consensus 46 ~~~rr~~L~~ni~~fr~~L~~~-----G~~~~~~s----~SPIiPV~~g-~~~~~~~~a--~~i~~PtVP~g~~RlRI~l 113 (153)
.++.++++++...++++.|.+. |+.+.+.. .++|+.+.+. +.+...+.. ..|.- ...+...+||++
T Consensus 307 ~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~~~~~~~~~~L~~~gi~v--~~~~~~~iRiS~ 384 (406)
T TIGR01814 307 MEALRKKSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSLTHPVPGKAVFQALIKRGVIG--DKREPSVIRVAP 384 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEEEecCCHHHHHHHHHHCCEEE--eccCCCeEEEec
Confidence 3778899999999999999874 35543321 2468877765 444433332 22210 122346899999
Q ss_pred -eCCCCHHHHHHHHHHHHHHH
Q psy5049 114 -SHLRSANLWNRPHSPSLMAV 133 (153)
Q Consensus 114 -sA~HT~edId~L~~~~L~~~ 133 (153)
+..+|++|||++++ +++.+
T Consensus 385 ~~~~nt~~did~l~~-~l~~~ 404 (406)
T TIGR01814 385 VPLYNTFVDVYDAVN-VLEEI 404 (406)
T ss_pred hhccCCHHHHHHHHH-HHHHH
Confidence 57999999999998 77654
No 71
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=96.10 E-value=0.035 Score=47.56 Aligned_cols=84 Identities=13% Similarity=0.023 Sum_probs=57.6
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCCcccC--CCCCCeEEEEc-CCchHHHhcc-----ccc-cCCCCCCCCceEEEEeeCC
Q psy5049 46 GIRRISVLAHNTRYFRRKLNRLGLIVYG--HRDSPVVPVLV-FFFSKVGQTS-----IGL-GVEQTALNDGLSLYESSHL 116 (153)
Q Consensus 46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~--~s~SPIiPV~~-g~~~~~~~~a-----~~i-~~PtVP~g~~RlRI~lsA~ 116 (153)
..+.+++++++..+|++.|++.++.... .+...++++.+ ++.....++. ..| .. +.+...+|++.+..
T Consensus 306 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~g~~~~i~~~~~~~~~~~~~~~L~~~GV~v~---~~~~~~lR~~p~~~ 382 (401)
T PRK00854 306 EEGMIENAAEMGAYFLEGLRSIRSNIVREVRGRGLMLAVELEPEAGGARQYCEALKERGLLAK---DTHDHTIRLAPPLV 382 (401)
T ss_pred HcCHHHHHHHHHHHHHHHHHhhccCceEEEeccceEEEEEEecCchhHHHHHHHHHHCCeEEe---cCCCCEEEEeCCcc
Confidence 3457899999999999999987754211 24467777755 3322233332 222 22 23457999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q psy5049 117 RSANLWNRPHSPSLMAV 133 (153)
Q Consensus 117 HT~edId~L~~~~L~~~ 133 (153)
||++||+++++ .++.+
T Consensus 383 ~t~e~i~~~i~-~l~~~ 398 (401)
T PRK00854 383 ITREQVDWALE-QIAKV 398 (401)
T ss_pred cCHHHHHHHHH-HHHHH
Confidence 99999999888 77654
No 72
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=95.96 E-value=0.036 Score=47.00 Aligned_cols=83 Identities=10% Similarity=-0.046 Sum_probs=56.2
Q ss_pred chHHHHHHHHHHHHHHHHHHhC--CCcccC--CCCCCeEEEEcCCch-HHHhcc---ccccCCCCCCCCceEEEEeeCCC
Q psy5049 46 GIRRISVLAHNTRYFRRKLNRL--GLIVYG--HRDSPVVPVLVFFFS-KVGQTS---IGLGVEQTALNDGLSLYESSHLR 117 (153)
Q Consensus 46 ~~~rr~~L~~ni~~fr~~L~~~--G~~~~~--~s~SPIiPV~~g~~~-~~~~~a---~~i~~PtVP~g~~RlRI~lsA~H 117 (153)
.++.+++++++..++++.|++. ++.... .+...++.+-+.++. ...... ..+.. |.|...+||+.+..|
T Consensus 285 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~l~~~gv~v~---~~g~~~lRi~p~~~~ 361 (377)
T PRK02936 285 QPSFLEEVQEKGEYFLQKLQEELEHLECVKNIRGKGLMIGIECTEEVAPVIEQLREEGLLVL---SAGPNVIRLLPPLVV 361 (377)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhhCCcEEeEeecceEEEEEecchHHHHHHHHHHCCeEEe---cCCCCEEEEECCccc
Confidence 4578899999999999999874 332211 134567888776542 122211 22232 346789999999999
Q ss_pred CHHHHHHHHHHHHHH
Q psy5049 118 SANLWNRPHSPSLMA 132 (153)
Q Consensus 118 T~edId~L~~~~L~~ 132 (153)
|+++|+++++ .++.
T Consensus 362 ~~~~i~~~i~-~l~~ 375 (377)
T PRK02936 362 TKEELDQAVY-LLKK 375 (377)
T ss_pred CHHHHHHHHH-HHHH
Confidence 9999999888 6654
No 73
>PRK07908 hypothetical protein; Provisional
Probab=95.92 E-value=0.074 Score=44.70 Aligned_cols=86 Identities=17% Similarity=0.101 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc--------ccccCCCCCCCCceEEEEeeCCCC
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS--------IGLGVEQTALNDGLSLYESSHLRS 118 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a--------~~i~~PtVP~g~~RlRI~lsA~HT 118 (153)
.+.++++.++-.++.+.|.+.|+.+...+.+..+-+-+.+.+...+.. .+..|+. .+..-+||++ .+
T Consensus 256 ~~~~~~~~~~r~~l~~~L~~~~~~~~~p~~g~~~~~~~~~~~~~~~~l~~~gI~v~~g~~f~~--~~~~~vRis~---~~ 330 (349)
T PRK07908 256 AADAARLAADRAEMVAGLRAVGARVVDPAAAPFVLVRVPDAELLRKRLRERGIAVRRGDTFPG--LDPDYLRLAV---RP 330 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcEeccCCCceEEEEECCcHHHHHHHHHhCCEEEEECCCCCC--CCCCeEEEEe---CC
Confidence 456788889999999999988876544355666666555433333332 2223332 2357899999 47
Q ss_pred HHHHHHHHHHHHHHHHhcCC
Q psy5049 119 ANLWNRPHSPSLMAVFRGGG 138 (153)
Q Consensus 119 ~edId~L~~~~L~~~~~~~~ 138 (153)
++|++++++ +|+.+...+|
T Consensus 331 ~~~~~~l~~-al~~~~~~~~ 349 (349)
T PRK07908 331 RAEVPVLVQ-ALAEILKAGG 349 (349)
T ss_pred CccHHHHHH-HHHHHHhccC
Confidence 899999999 8888776654
No 74
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=95.77 E-value=0.027 Score=49.32 Aligned_cols=86 Identities=10% Similarity=-0.072 Sum_probs=53.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHhCC--CcccCCCCCCeEEEEcC----------CchHHHhcc-----ccc-cCCCCCCCC
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRLG--LIVYGHRDSPVVPVLVF----------FFSKVGQTS-----IGL-GVEQTALND 106 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~G--~~~~~~s~SPIiPV~~g----------~~~~~~~~a-----~~i-~~PtVP~g~ 106 (153)
+.+.++++++++.++|++.|.+.. +.+ ..+.+..+++++ +...+..+. ..+ ..|.-+ +.
T Consensus 324 ~~~~l~~~~~~~g~~l~~~L~~l~~~~~~--~~~vrg~Gl~~gi~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~g~-~~ 400 (433)
T PRK08117 324 KEEKLLDNANEMGAYALERLEVLKEKHPV--IGDVRGIGLMIGIEIVDPDGEPDGDAVEKILDKCLEKGLLFYLCGN-AG 400 (433)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHhcCCc--eeeeecCCcEEEEEEecCCCCcchHHHHHHHHHHHHCCCEEeecCC-CC
Confidence 345789999999999999998753 221 122333334332 122222222 333 333322 35
Q ss_pred ceEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049 107 GLSLYESSHLRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 107 ~RlRI~lsA~HT~edId~L~~~~L~~~~ 134 (153)
..+|++.+..||++||+++++ .++...
T Consensus 401 ~~lRl~p~~~~t~~~i~~~~~-~l~~~l 427 (433)
T PRK08117 401 NVLRMIPPLTVTKEEIDEGLD-ILDEAL 427 (433)
T ss_pred CEEEEeCCccCCHHHHHHHHH-HHHHHH
Confidence 799999999999999999998 776544
No 75
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=95.77 E-value=0.054 Score=46.00 Aligned_cols=112 Identities=12% Similarity=0.057 Sum_probs=61.8
Q ss_pred HHHHHhHHHHHHHhhhc-ccEEeecCCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEE
Q psy5049 5 SVLAQNTRYFRRKLNRL-GLILYVLFQAQTKPPRSHCICFISGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVL 83 (153)
Q Consensus 5 ~~~~~~~~~~~~~l~~~-g~~~~~~~~~~~~p~~~~~l~~~~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~ 83 (153)
.+.++.++|++++|..+ |+.++|..+...+++.+..+..... ..+.+.|.+.|+.+. +.+..-+-.
T Consensus 262 ~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~L~~~gI~v~--~g~~c~~~~ 328 (382)
T TIGR03403 262 SHVRRLRDRLEDALLELPDVFVVGDREHRVPNTILISIKGVEG-----------EAMLWDLNKAGIAAS--TGSACASED 328 (382)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEECCCCCCcCCEEEEEeCCCCH-----------HHHHHhhccCCEEEE--chhccCCCC
Confidence 45667788999999874 7888886544445443322321111 123334666777652 112211011
Q ss_pred cCCchHHHhccccccCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049 84 VFFFSKVGQTSIGLGVEQTALNDGLSLYESSHLRSANLWNRPHSPSLMAVFR 135 (153)
Q Consensus 84 ~g~~~~~~~~a~~i~~PtVP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~ 135 (153)
+.. .... .++.++. +...+-+|++++..+|+||||++++ +|+.+.+
T Consensus 329 ~~~-~~v~---~~~g~~~-~~~~~~iR~s~~~~~t~~did~~~~-~l~~~~~ 374 (382)
T TIGR03403 329 LEA-NPVM---VAIGADK-ELAHTAIRLSLSRFTTEEEIDYTIE-VFKKAVQ 374 (382)
T ss_pred CCc-CHHH---HHcCCCh-HHhCeeEEEECCCCCCHHHHHHHHH-HHHHHHH
Confidence 111 1111 1122211 2234579999999999999999999 8876543
No 76
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=95.76 E-value=0.059 Score=45.27 Aligned_cols=82 Identities=16% Similarity=0.062 Sum_probs=53.9
Q ss_pred chHHHHHHHHHHHHHHHHHHhC-CCcccCC--CCCCeEEEEcCCc--hHHHhcc----cccc---CCCCC----C-CCce
Q psy5049 46 GIRRISVLAHNTRYFRRKLNRL-GLIVYGH--RDSPVVPVLVFFF--SKVGQTS----IGLG---VEQTA----L-NDGL 108 (153)
Q Consensus 46 ~~~rr~~L~~ni~~fr~~L~~~-G~~~~~~--s~SPIiPV~~g~~--~~~~~~a----~~i~---~PtVP----~-g~~R 108 (153)
.++++++.+++.+++++.|.+. |+.+... ...+++.+-+.+. .+..+.. ..+. +.++| . ....
T Consensus 273 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~gi~i~~g~~~~~~~~~~~~~~~~ 352 (373)
T cd06453 273 MEAIAAHEHELTAYALERLSEIPGVRVYGDAEDRAGVVSFNLEGIHPHDVATILDQYGIAVRAGHHCAQPLMRRLGVPGT 352 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCeEEEEECCcCHHHHHHHHHHCCEEeccCccchhHHHHHhCCCCe
Confidence 3667888889999999999987 4554321 2467888877542 2222222 2121 11211 1 2468
Q ss_pred EEEEeeCCCCHHHHHHHHH
Q psy5049 109 SLYESSHLRSANLWNRPHS 127 (153)
Q Consensus 109 lRI~lsA~HT~edId~L~~ 127 (153)
+||+++..+|++|+|++++
T Consensus 353 iRis~~~~~t~~di~~~~~ 371 (373)
T cd06453 353 VRASFGLYNTEEEIDALVE 371 (373)
T ss_pred EEEEecCCCCHHHHHHHHh
Confidence 9999999999999999987
No 77
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=95.73 E-value=0.076 Score=44.85 Aligned_cols=95 Identities=7% Similarity=-0.075 Sum_probs=53.4
Q ss_pred HHHHHhHHHHHHHhhhc-ccEEeecCCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEE
Q psy5049 5 SVLAQNTRYFRRKLNRL-GLILYVLFQAQTKPPRSHCICFISGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVL 83 (153)
Q Consensus 5 ~~~~~~~~~~~~~l~~~-g~~~~~~~~~~~~p~~~~~l~~~~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~ 83 (153)
.+..++.+||+++|.++ ||.++++..+ ..++. .+......+...........+.+.|.+.|+..
T Consensus 264 ~~~~~~~~~l~~~L~~l~g~~v~~~~~~-~~n~~--~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~------------ 328 (361)
T cd06452 264 DEEVEKARWFVAELEKIEGIKQLGEKPK-NHDLM--FFETPSFDEIAKKHKRRGYFLYSELKKRGIHG------------ 328 (361)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEECCCCC-CCceE--EEEcCCcchhhhhccccchhHHHHHHHcCceE------------
Confidence 33446778999999999 9999875432 23321 12222111110001112234667777666420
Q ss_pred cCCchHHHhccccccCCCCCCCCc-eEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049 84 VFFFSKVGQTSIGLGVEQTALNDG-LSLYESSHLRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 84 ~g~~~~~~~~a~~i~~PtVP~g~~-RlRI~lsA~HT~edId~L~~~~L~~~~ 134 (153)
.+| |.. -+|++. ..+|+||++.+++ +|+.+.
T Consensus 329 --------------~~~----~~~~~~ri~~-~g~~~e~~~~l~~-al~~~~ 360 (361)
T cd06452 329 --------------IKP----GLTRYFKLST-YGLTWEQVEYVVD-AFKEIA 360 (361)
T ss_pred --------------EcC----CCceEEEEEe-cCCCHHHHHHHHH-HHHHHh
Confidence 012 233 466666 6699999999998 887653
No 78
>PRK03080 phosphoserine aminotransferase; Provisional
Probab=95.71 E-value=0.14 Score=44.12 Aligned_cols=88 Identities=10% Similarity=-0.158 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCC-cccCC---CCC-CeEEEEcCC-----chH-HHhcc---ccccCCCCCCCCceEEEE
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGL-IVYGH---RDS-PVVPVLVFF-----FSK-VGQTS---IGLGVEQTALNDGLSLYE 112 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~-~~~~~---s~S-PIiPV~~g~-----~~~-~~~~a---~~i~~PtVP~g~~RlRI~ 112 (153)
+.+.++.++.+.++++.|.+.|. .+... ..+ .|+.+.+.+ +.. ...+. ..++.-........+|++
T Consensus 271 e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~i~~~~~~~~~~~~~~~~~~~l~~~~i~v~~g~~~~~~~~vRis 350 (378)
T PRK03080 271 DALIARTAANASVLYDWAEKTPWATPLVADPATRSNTSVTLDFVDAQAAVDAAAVAKLLRENGAVDIEPYRDAPNGLRIW 350 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccccCCccccCccEEEEEcCCchHHHHHHHHHHHHHcCCeeccccccCCCCcEEEe
Confidence 66788999999999999998874 33321 124 478887765 111 11111 222221111134689999
Q ss_pred eeCCCCHHHHHHHHHHHHHHHHh
Q psy5049 113 SSHLRSANLWNRPHSPSLMAVFR 135 (153)
Q Consensus 113 lsA~HT~edId~L~~~~L~~~~~ 135 (153)
.+-.+|++||+++++ +++.+.+
T Consensus 351 ~~~~~t~~di~~l~~-al~~~~~ 372 (378)
T PRK03080 351 CGPTVEPADVEALTP-WLDWAFE 372 (378)
T ss_pred cCCCCCHHHHHHHHH-HHHHHHH
Confidence 999999999999999 8876544
No 79
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=95.69 E-value=0.084 Score=46.31 Aligned_cols=88 Identities=9% Similarity=-0.087 Sum_probs=60.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHhC--CCc---ccCCCCCCeEEEEcCCchHHHhcc-----ccc-cCCCCCCCCceEEEEe
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRL--GLI---VYGHRDSPVVPVLVFFFSKVGQTS-----IGL-GVEQTALNDGLSLYES 113 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~--G~~---~~~~s~SPIiPV~~g~~~~~~~~a-----~~i-~~PtVP~g~~RlRI~l 113 (153)
..++..++++++..+|++.|+++ .+. ....+...++.|.+.+...+..+. ..+ ..|. +.+..++|++.
T Consensus 316 ~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~~~~vrg~Gl~~~i~l~~~~~~~~l~~~~~~~Gv~~~~~-~~~~~~lr~~p 394 (425)
T PRK09264 316 SDDAFEKEVKAKGELVRERLEEIAAKYPGLGAEVRGRGMMQGIDFGDGELAGKIAAEAFENGLIIETS-GPEDEVVKLLP 394 (425)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhCCCceecceecccEEEEEecChHHHHHHHHHHHHCCCEEecc-CCCCCEEEEeC
Confidence 45578899999999999988753 221 111245678888887655444433 333 3333 44458999999
Q ss_pred eCCCCHHHHHHHHHHHHHHHH
Q psy5049 114 SHLRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 114 sA~HT~edId~L~~~~L~~~~ 134 (153)
+..||++||+++++ .++...
T Consensus 395 ~l~~t~~ei~~~~~-~l~~~l 414 (425)
T PRK09264 395 PLTIDEEELEEGLD-ILEEAV 414 (425)
T ss_pred CCCCCHHHHHHHHH-HHHHHH
Confidence 99999999999988 776544
No 80
>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.
Probab=95.69 E-value=0.043 Score=48.34 Aligned_cols=85 Identities=9% Similarity=0.004 Sum_probs=59.4
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCCcc-cC--CCCCCeEEEEcCCchHHHhcc-----ccc-cCCCCCCCCceEEEEeeCC
Q psy5049 46 GIRRISVLAHNTRYFRRKLNRLGLIV-YG--HRDSPVVPVLVFFFSKVGQTS-----IGL-GVEQTALNDGLSLYESSHL 116 (153)
Q Consensus 46 ~~~rr~~L~~ni~~fr~~L~~~G~~~-~~--~s~SPIiPV~~g~~~~~~~~a-----~~i-~~PtVP~g~~RlRI~lsA~ 116 (153)
..+.+++++++..+|++.|++.+... .+ .+.++|++|.+.++..+..+. ..+ ..|. + ..+|++....
T Consensus 332 ~~~~~~~~~~~~~~l~~~L~~l~~~~~i~~vrg~G~~~~i~~~~~~~~~~~~~~l~~~Gv~~~~~---~-~~l~~~ppl~ 407 (427)
T TIGR00508 332 EGEWQKQVSAIENQLKRELSPLRKNPVVKDVRVLGAIGVVEMYKPVNVEELQKKFVEQGVWIRPF---G-KLIYVMPPYI 407 (427)
T ss_pred hCCHHHHHHHHHHHHHHHHHHhhcCCCEEeEeccccEEEEEECCccCHHHHHHHHHHCCeEEEec---C-CEEEEECCCC
Confidence 34678999999999999999875321 11 134899999998654333332 222 2222 2 4799999999
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q psy5049 117 RSANLWNRPHSPSLMAVFR 135 (153)
Q Consensus 117 HT~edId~L~~~~L~~~~~ 135 (153)
||++|||++++ +++...+
T Consensus 408 ~t~~~id~~~~-~l~~~l~ 425 (427)
T TIGR00508 408 ITTEQLQKLTA-ALIEALH 425 (427)
T ss_pred CCHHHHHHHHH-HHHHHHh
Confidence 99999999998 7766543
No 81
>PLN02624 ornithine-delta-aminotransferase
Probab=95.67 E-value=0.027 Score=50.33 Aligned_cols=93 Identities=11% Similarity=0.003 Sum_probs=62.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHhCC--Cc-ccC--CCCCCeEEEEcCCc----hHHHhcc------ccccCCCCCCCCceE
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRLG--LI-VYG--HRDSPVVPVLVFFF----SKVGQTS------IGLGVEQTALNDGLS 109 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~G--~~-~~~--~s~SPIiPV~~g~~----~~~~~~a------~~i~~PtVP~g~~Rl 109 (153)
...++.+++.++..+|++.|.+.. +. ..+ .+...+++|.+.++ ..+.+++ ..+..| .+...+
T Consensus 342 ~~~~l~~~~~~~~~~l~~~L~~l~~~~~~~i~~vrg~G~~~~i~l~~~~~~~~~a~~~~~~L~e~GV~v~p---~~~~~l 418 (474)
T PLN02624 342 QDEKLAERSAKLGQELRDQLQKIQKQFPKLIKEVRGRGLLNAVVLNSPKLGPVSAYDVCLKLKERGLLAKP---THDTII 418 (474)
T ss_pred HhchHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEeeEEEEEEEecCCCcChHHHHHHHHHHHhCCeEEec---CCCCEE
Confidence 345677889999999999998753 21 111 13456888877653 2233332 222333 356889
Q ss_pred EEEeeCCCCHHHHHHHHHHHHHHHHhcCCCce
Q psy5049 110 LYESSHLRSANLWNRPHSPSLMAVFRGGGPGI 141 (153)
Q Consensus 110 RI~lsA~HT~edId~L~~~~L~~~~~~~~~~~ 141 (153)
||+.+..||++||+++++ .|+++.+...+.|
T Consensus 419 R~~p~l~~t~e~id~~l~-~L~~~l~~~~~~~ 449 (474)
T PLN02624 419 RLAPPLSISEDELQECSK-ALSDVLEHDLPKL 449 (474)
T ss_pred EEECCccCCHHHHHHHHH-HHHHHHHHHHHHh
Confidence 999999999999999998 8877776655544
No 82
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=95.67 E-value=0.028 Score=48.80 Aligned_cols=86 Identities=9% Similarity=0.077 Sum_probs=52.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHhCC--CcccCC--CCCCeEEEEcCCc--hHHHhcc-----ccc-cCCCCCCCCceEEEE
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRLG--LIVYGH--RDSPVVPVLVFFF--SKVGQTS-----IGL-GVEQTALNDGLSLYE 112 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~G--~~~~~~--s~SPIiPV~~g~~--~~~~~~a-----~~i-~~PtVP~g~~RlRI~ 112 (153)
..++++++++++..+|++.|.+.+ +.+.+. +...++.+.+.++ ..+..+. ..+ ..|. +...+|++
T Consensus 300 ~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~Gl~~~~~l~~~~~~~~~~~~~~l~~~Gv~v~~~---g~~~lRl~ 376 (406)
T PRK12381 300 NTPEMLNGVKQRHDWFVERLNTINARYGLFSEIRGLGLLIGCVLNAEYAGKAKQISQEAAKAGVMVLIA---GPNVVRFA 376 (406)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHhhCCCEEEEecCeEEEEEEecCchhhHHHHHHHHHHHCCcEEeeC---CCCEEEEe
Confidence 456789999999999999998765 221110 1122333333221 1222222 222 2232 45699999
Q ss_pred eeCCCCHHHHHHHHHHHHHHHH
Q psy5049 113 SSHLRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 113 lsA~HT~edId~L~~~~L~~~~ 134 (153)
++..||++||+++++ .++...
T Consensus 377 p~~~~t~~~i~~~~~-~l~~~l 397 (406)
T PRK12381 377 PALNISEEEITTGLD-RFARAC 397 (406)
T ss_pred CCccCCHHHHHHHHH-HHHHHH
Confidence 999999999999888 776544
No 83
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=95.66 E-value=0.058 Score=47.08 Aligned_cols=85 Identities=9% Similarity=-0.112 Sum_probs=57.8
Q ss_pred chHHHHHHHHHHHHHHHHHHhC-CCcccC--CCCCCeEEEEcCCch---HHHhcc------ccccCCCCCCCCceEEEEe
Q psy5049 46 GIRRISVLAHNTRYFRRKLNRL-GLIVYG--HRDSPVVPVLVFFFS---KVGQTS------IGLGVEQTALNDGLSLYES 113 (153)
Q Consensus 46 ~~~rr~~L~~ni~~fr~~L~~~-G~~~~~--~s~SPIiPV~~g~~~---~~~~~a------~~i~~PtVP~g~~RlRI~l 113 (153)
.+...++++++..++++.|++. ++.... .+...++.+.+.++. .+..+. ..+..|. + ..+|++.
T Consensus 325 ~~~~~~~~~~~g~~l~~~l~~l~~~~~i~~vrg~Gl~~~i~l~~~~~~~~~~~l~~~l~~~Gv~v~~~---~-~~lR~~p 400 (423)
T PRK05964 325 DEPVLERVAALSAGLAEGLEPFRDLPGVADVRVLGAIGAVELDRPVLERDGPALRAFALERGVLLRPL---G-NTIYLMP 400 (423)
T ss_pred hcCHHHHHHHHHHHHHHHHHhhccCCCeEEeecccEEEEEEeccCcchhHHHHHHHHHHHCCeEEEec---C-CEEEEeC
Confidence 4568899999999999999876 232111 234677788776543 122222 2223332 2 5899999
Q ss_pred eCCCCHHHHHHHHHHHHHHHHh
Q psy5049 114 SHLRSANLWNRPHSPSLMAVFR 135 (153)
Q Consensus 114 sA~HT~edId~L~~~~L~~~~~ 135 (153)
+..||++|||++++ +++...+
T Consensus 401 ~l~~t~edId~~v~-~l~~al~ 421 (423)
T PRK05964 401 PYIITAEELDRITD-AIVEVAD 421 (423)
T ss_pred CcccCHHHHHHHHH-HHHHHHh
Confidence 99999999999998 7776554
No 84
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=95.63 E-value=0.088 Score=44.20 Aligned_cols=85 Identities=12% Similarity=0.048 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhC-CCcccCC----CCCCeEEEEcCCc--hHHHhcc--c-c--c---------cCCCC-CC
Q psy5049 47 IRRISVLAHNTRYFRRKLNRL-GLIVYGH----RDSPVVPVLVFFF--SKVGQTS--I-G--L---------GVEQT-AL 104 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~----s~SPIiPV~~g~~--~~~~~~a--~-~--i---------~~PtV-P~ 104 (153)
++.+++.+++.+++++.|.+. |+.+.+. ..++|+.+.+.+. ....+.. . . + .+|.+ +.
T Consensus 269 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~g~~ 348 (376)
T TIGR01977 269 ANIAKKECMLTEKLLNGLREINKVKIYGPADPANRVGVVSFTVEGIDSEEVADILDEKFDIATRTGLHCAPLAHKTIGTF 348 (376)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCccccCCeEEEEECCCCHHHHHHHHhccCCEEEEcccccchHHHHHhCCC
Confidence 567888999999999999854 4544331 1367887777532 2222221 1 1 1 11111 22
Q ss_pred CCceEEEEeeCCCCHHHHHHHHHHHHHH
Q psy5049 105 NDGLSLYESSHLRSANLWNRPHSPSLMA 132 (153)
Q Consensus 105 g~~RlRI~lsA~HT~edId~L~~~~L~~ 132 (153)
....+|++++..+|++||+++++ +|+.
T Consensus 349 ~~~~iRis~~~~~t~~dv~~~~~-~l~~ 375 (376)
T TIGR01977 349 ATGTIRLSLGYFNTEEEIEKLLE-ALSE 375 (376)
T ss_pred CCCeEEEecCCCCCHHHHHHHHH-HHhh
Confidence 45789999999999999999988 7654
No 85
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=95.58 E-value=0.069 Score=52.33 Aligned_cols=83 Identities=10% Similarity=0.028 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc--ccccCCCCCCCCceEEEEeeCCCCHHHHHH
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS--IGLGVEQTALNDGLSLYESSHLRSANLWNR 124 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a--~~i~~PtVP~g~~RlRI~lsA~HT~edId~ 124 (153)
++.+++.++++.|+++.|.+.|+.+.....+-++.|-+.++.++.+.+ ..|.--.+. ...+|+|++-.+|+||||.
T Consensus 381 ~~Ia~ri~~la~~l~~~L~~~G~~~~~~~~f~~vt~~~~~~~~v~~~L~~~gI~l~~~~--~~~lrvs~~e~~T~edId~ 458 (993)
T PLN02414 381 KTIAQRVHGLAGVFAAGLKKLGFQVQSLPFFDTVKVKCSDADAIADAAAKVGINLRVVD--ANTVTVSFDETTTLEDVDK 458 (993)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCccCCCCCcCeEEEecCCHHHHHHHHHHCCCeeEEec--CCeEEEEeeccCCHHHHHH
Confidence 455788999999999999999987644333457777776554444433 222111111 3579999999999999999
Q ss_pred HHHHHHHH
Q psy5049 125 PHSPSLMA 132 (153)
Q Consensus 125 L~~~~L~~ 132 (153)
|++ ++..
T Consensus 459 L~~-~l~~ 465 (993)
T PLN02414 459 LFK-VFAG 465 (993)
T ss_pred HHH-HHcc
Confidence 999 8853
No 86
>PRK02769 histidine decarboxylase; Provisional
Probab=95.51 E-value=0.12 Score=45.14 Aligned_cols=83 Identities=7% Similarity=-0.069 Sum_probs=59.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhccccccCCCCCCCCceEEEEeeCCCCHHHHH
Q psy5049 44 ISGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTSIGLGVEQTALNDGLSLYESSHLRSANLWN 123 (153)
Q Consensus 44 ~~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a~~i~~PtVP~g~~RlRI~lsA~HT~edId 123 (153)
....+..++..++++|+.++|.+.|+.+...+.+.||.+-..+++.. +-|... +. + ..+|++++..||+|.||
T Consensus 288 ~G~~~~~~~~~~la~~l~~~L~~~g~~~~~~p~~~~v~f~~~~~~~~-~~w~l~--~~-~---~~~hi~~~~~~~~~~~~ 360 (380)
T PRK02769 288 KGLRQRVQHCLDMAQYAVDRLQANGIPAWRNPNSITVVFPCPSERIW-KKWHLA--TS-G---NQAHIITMPHHNKQQID 360 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEcCCCceEEEEcCCCHHHH-hCeeEc--cc-C---CEEEEEECCCCCHHHHH
Confidence 45577889999999999999999999877767777765544433322 212111 11 1 37999999999999999
Q ss_pred HHHHHHHHHH
Q psy5049 124 RPHSPSLMAV 133 (153)
Q Consensus 124 ~L~~~~L~~~ 133 (153)
.++++..+..
T Consensus 361 ~f~~dl~~~~ 370 (380)
T PRK02769 361 SLIDELIFDL 370 (380)
T ss_pred HHHHHHHHHH
Confidence 9988444433
No 87
>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=95.32 E-value=0.062 Score=47.09 Aligned_cols=85 Identities=8% Similarity=-0.048 Sum_probs=53.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHh----CCCcccCCCCCCeEEEEcCCc-------------hHHHhcc------ccccCCC
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNR----LGLIVYGHRDSPVVPVLVFFF-------------SKVGQTS------IGLGVEQ 101 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~----~G~~~~~~s~SPIiPV~~g~~-------------~~~~~~a------~~i~~Pt 101 (153)
+.++++++++++..+|++.|++ .++.....+...+++|.+.++ ..+..+. -.+..|.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vrg~G~~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gv~v~~~ 395 (426)
T PRK00062 316 KEPGFYEELEALTKRLAEGLKEAAKKAGIPLTVNRVGSMFGLFFTDEPVTNYADAKKSDTERFARFFHAMLDEGVYLAPS 395 (426)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecceEEEEEecCCCcchhhhccccHHHHHHHHHHHHHCCeEeecC
Confidence 4447999999999999999974 365432234577888877642 1122222 2223333
Q ss_pred CCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049 102 TALNDGLSLYESSHLRSANLWNRPHSPSLMAVFR 135 (153)
Q Consensus 102 VP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~ 135 (153)
.+ .-++ +++.||++|||++++ +++.+..
T Consensus 396 ~~---~~~~--~~~~~t~~ei~~~~~-~l~~~l~ 423 (426)
T PRK00062 396 QF---EAGF--VSAAHTDEDIEKTLE-AARKAFA 423 (426)
T ss_pred Cc---Ccee--eeccCCHHHHHHHHH-HHHHHHH
Confidence 22 1233 468999999999998 7766553
No 88
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=95.29 E-value=0.19 Score=42.54 Aligned_cols=89 Identities=9% Similarity=-0.010 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHHHHHHHHh-C-CCcccCCC--CCC-eEEEEcCC--chHHHhcc----cccc------CCCC-------
Q psy5049 47 IRRISVLAHNTRYFRRKLNR-L-GLIVYGHR--DSP-VVPVLVFF--FSKVGQTS----IGLG------VEQT------- 102 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~-~-G~~~~~~s--~SP-IiPV~~g~--~~~~~~~a----~~i~------~PtV------- 102 (153)
++..++..++..++++.|++ . |+.+.+.. ..| |+.+.+.. ........ +.++ .+..
T Consensus 254 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~g~~c~~~~~~~~~~~~ 333 (379)
T TIGR03402 254 EEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNISFEYIEGEAILLLLDMEGICASSGSACTSGSLEPSHVLR 333 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCccCCCCEEEEEecCCCHHHHHHhhccCCEEEEchhhcCCCCCCcCHHHH
Confidence 44456777788888888875 3 44443322 224 77666542 23333222 1111 1110
Q ss_pred ------CCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Q psy5049 103 ------ALNDGLSLYESSHLRSANLWNRPHSPSLMAVFRG 136 (153)
Q Consensus 103 ------P~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~~ 136 (153)
....+-+|++++..+|+||||++++ +|+.+.+.
T Consensus 334 ~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~-~l~~~~~~ 372 (379)
T TIGR03402 334 AMGVPHTAAHGSIRFSLSRYNTEEDIDYVLE-VLPPIIAR 372 (379)
T ss_pred HcCCChhhcCceEEEEcCCCCCHHHHHHHHH-HHHHHHHH
Confidence 1123679999999999999999999 88766543
No 89
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=95.15 E-value=0.19 Score=42.28 Aligned_cols=83 Identities=10% Similarity=-0.066 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc------ccccCCCCCCC-CceEEEEeeCCCCH
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS------IGLGVEQTALN-DGLSLYESSHLRSA 119 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a------~~i~~PtVP~g-~~RlRI~lsA~HT~ 119 (153)
++.++.++++..++++.|++.|+.+. .+.++.+.+-+++.....+++ ....-|....+ ..-+|++++ +.
T Consensus 275 ~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~g~~~~i~~~~~~~~~~~~~~L~~~gI~v~~~~~~~~~~~iRis~~---~~ 350 (367)
T PRK02731 275 EKSRALNAEGMAWLTEFLAELGLEYI-PSVGNFILVDFDDGKDAAEAYQALLKRGVIVRPVAGYGLPNALRITIG---TE 350 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCccC-CCCceEEEEECCCCCCHHHHHHHHHHCCEEEEeCCCCCCCCeEEEecC---CH
Confidence 55677778888899999998887664 456788887774322222221 11111211112 357999985 78
Q ss_pred HHHHHHHHHHHHHHH
Q psy5049 120 NLWNRPHSPSLMAVF 134 (153)
Q Consensus 120 edId~L~~~~L~~~~ 134 (153)
+|++++++ +|+++.
T Consensus 351 ~e~~~l~~-aL~~~~ 364 (367)
T PRK02731 351 EENRRFLA-ALKEFL 364 (367)
T ss_pred HHHHHHHH-HHHHHH
Confidence 99999998 887664
No 90
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
Probab=95.01 E-value=0.23 Score=44.18 Aligned_cols=90 Identities=11% Similarity=0.059 Sum_probs=63.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhCC-CcccCC-CCCCeEEEEcCC-------chHHHhc-c---c---cccCCCCCCCCc
Q psy5049 44 ISGIRRISVLAHNTRYFRRKLNRLG-LIVYGH-RDSPVVPVLVFF-------FSKVGQT-S---I---GLGVEQTALNDG 107 (153)
Q Consensus 44 ~~~~~rr~~L~~ni~~fr~~L~~~G-~~~~~~-s~SPIiPV~~g~-------~~~~~~~-a---~---~i~~PtVP~g~~ 107 (153)
....+..++..+++++|.++|.+.+ |.+.+. ...+|+.+-+.+ +....+. . . ....|++-.|..
T Consensus 322 ~G~~~i~~~~~~la~~l~~~L~~~~~~el~~~~~~~~iV~Fr~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~p~~~~~~~ 401 (431)
T TIGR01788 322 EGYRKIMQNSLDVARYLAEEIAKLGPFEIISDGSGIPLVAFKLKDDADPGYTLYDLSHRLRERGWIVPAYTLPKNAEDIV 401 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeCCCCceEEEEEeCCCCCCCcCHHHHHHHHHHCCCcccCCCCCCccCCeE
Confidence 4557778899999999999999876 666543 467787766542 1222222 1 2 235566566888
Q ss_pred eEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049 108 LSLYESSHLRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 108 RlRI~lsA~HT~edId~L~~~~L~~~~ 134 (153)
-+|+++.+.++++.++++++ .+.++.
T Consensus 402 ~lR~~~~~~~~~~~~~~~~~-~~~~~~ 427 (431)
T TIGR01788 402 VMRIVVREGFSRDLAELLIE-DIEAAL 427 (431)
T ss_pred EEEEEecCCCCHHHHHHHHH-HHHHHH
Confidence 89999999999999999999 555443
No 91
>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional
Probab=94.92 E-value=0.1 Score=45.98 Aligned_cols=79 Identities=14% Similarity=-0.005 Sum_probs=48.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHh----CCCc--ccCCCCCCeEEEEcC-----CchHHH--hcc-----ccccCCCCCCCC
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNR----LGLI--VYGHRDSPVVPVLVF-----FFSKVG--QTS-----IGLGVEQTALND 106 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~----~G~~--~~~~s~SPIiPV~~g-----~~~~~~--~~a-----~~i~~PtVP~g~ 106 (153)
+.+.++++++++..+|++.|++ .++. +.+ ..+++.++++. .+.... .+. ..+..|.
T Consensus 307 ~~~~~~~~~~~~g~~l~~~L~~~~~~~~~~~~vr~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~p~----- 380 (431)
T PRK06209 307 RDEDVIERLHEQGAKLAAGVNEAAAEHGLQDHVRV-SGRPCCLTYSTLDGNGQPSQAFRTLFLQETIRRGVLMPS----- 380 (431)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEe-ecceEEEEEecCCcccCCcHHHHHHHHHHHHHCCccccc-----
Confidence 3456899999999999999975 4443 111 22454444442 122222 221 3333231
Q ss_pred ceEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049 107 GLSLYESSHLRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 107 ~RlRI~lsA~HT~edId~L~~~~L~~~~ 134 (153)
+++++.||++||+++++ +++...
T Consensus 381 ----l~is~~ht~~dId~~l~-~l~~~l 403 (431)
T PRK06209 381 ----LVVSYAHGDADIERTID-AVHGAL 403 (431)
T ss_pred ----ccccccCCHHHHHHHHH-HHHHHH
Confidence 57889999999999998 775443
No 92
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=94.91 E-value=0.25 Score=40.10 Aligned_cols=84 Identities=7% Similarity=-0.093 Sum_probs=52.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHhCCCccc-CCCCCCeEEEEcCCc---hHHHhcc----ccccCCCC--CCCCceEEEEee
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRLGLIVY-GHRDSPVVPVLVFFF---SKVGQTS----IGLGVEQT--ALNDGLSLYESS 114 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~G~~~~-~~s~SPIiPV~~g~~---~~~~~~a----~~i~~PtV--P~g~~RlRI~ls 114 (153)
..+..+++++++..++++.|.+.+.... .....-++.+.+.+. ....+.. ..+....- +.+...+||+++
T Consensus 256 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~ 335 (350)
T cd00609 256 HLEELRERYRRRRDALLEALKELGPLVVVKPSGGFFLWLDLPEGDDEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFA 335 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccccCCCccEEEEEecCCCChHHHHHHHHHhCCEEEecccccccCCCCeEEEEee
Confidence 4577788999999999999999877531 112222333333332 1222222 22222221 247789999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q psy5049 115 HLRSANLWNRPHSPSLM 131 (153)
Q Consensus 115 A~HT~edId~L~~~~L~ 131 (153)
.. +|||+++++ +++
T Consensus 336 ~~--~~~i~~~~~-al~ 349 (350)
T cd00609 336 TP--EEELEEALE-RLA 349 (350)
T ss_pred CC--HHHHHHHHH-Hhh
Confidence 99 999999887 654
No 93
>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=94.81 E-value=0.09 Score=47.30 Aligned_cols=84 Identities=8% Similarity=-0.159 Sum_probs=57.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHhCC--Cc-cc----CCCCCCeEEEEcCCchHHHhcc------ccccCCCCCCCCceEEE
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRLG--LI-VY----GHRDSPVVPVLVFFFSKVGQTS------IGLGVEQTALNDGLSLY 111 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~G--~~-~~----~~s~SPIiPV~~g~~~~~~~~a------~~i~~PtVP~g~~RlRI 111 (153)
+.+.+.+++++.-.+|++.|+++. +. .+ +.+..++++|.+.+...+..+. -.+..+. |...+||
T Consensus 366 ~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vRg~G~Glm~gie~~~~~~~~~i~~~~~~~Gvl~~~~---g~~~ir~ 442 (464)
T TIGR00699 366 KRKDLLENVAHVGDYLYTGLEDLQKKYPEFIQNLRGKGRGTFIAWDTPDEAKRDKLLKKARNNGVNIGGC---GVKAIRL 442 (464)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHhCCCceeeecccCeEEEEEEecCCHHHHHHHHHHHHHCCcEEecC---CCCeEEE
Confidence 445566777777799999998653 32 11 1256889999887644333332 2223332 6688999
Q ss_pred EeeCCCCHHHHHHHHHHHHHH
Q psy5049 112 ESSHLRSANLWNRPHSPSLMA 132 (153)
Q Consensus 112 ~lsA~HT~edId~L~~~~L~~ 132 (153)
+....+|++|||.+++ +++.
T Consensus 443 ~Ppl~it~~eid~~~~-~l~~ 462 (464)
T TIGR00699 443 RPMLVFQKHHADIFLE-IISK 462 (464)
T ss_pred eCCCCCCHHHHHHHHH-HHHH
Confidence 9999999999999888 6654
No 94
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=94.79 E-value=0.11 Score=45.95 Aligned_cols=85 Identities=9% Similarity=-0.012 Sum_probs=60.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHhC-CCcccC--CCCCCeEEEEcCCchHHHhcc-----ccc-cCCCCCCCCceEEEEeeC
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRL-GLIVYG--HRDSPVVPVLVFFFSKVGQTS-----IGL-GVEQTALNDGLSLYESSH 115 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~-G~~~~~--~s~SPIiPV~~g~~~~~~~~a-----~~i-~~PtVP~g~~RlRI~lsA 115 (153)
.....+++++++..+|++.|++. ++...+ .+.++|++|.++++..+..+. ..+ ..| .| .-+|+...-
T Consensus 330 ~~~~~~~~~~~~g~~l~~~L~~~~~~~~v~~vRg~Gl~~~iel~~~~~~~~i~~~l~e~Gi~v~~---~g-~~l~~~Ppl 405 (429)
T PRK06173 330 LESPWQQNIQRIEAQLKQELAPAAEFDSVAEVRVLGAIGVVEMKEPVNMATLQPRFVEHGIWVRP---FG-KLVYIMPPF 405 (429)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHhhcCCCeeeeeccceEEEEEeCCcccHHHHHHHHHHCCeEEEe---cC-CEEEEeCCc
Confidence 33457999999999999999864 444322 145899999998764333332 222 222 24 489999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q psy5049 116 LRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 116 ~HT~edId~L~~~~L~~~~ 134 (153)
..|++|||.+++ .++...
T Consensus 406 ~it~~ei~~~~~-~l~~~l 423 (429)
T PRK06173 406 IISPDELSQLTS-GLLRVL 423 (429)
T ss_pred cCCHHHHHHHHH-HHHHHH
Confidence 999999999998 776544
No 95
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=94.69 E-value=0.077 Score=45.78 Aligned_cols=86 Identities=3% Similarity=-0.072 Sum_probs=54.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHhCCCcc--c--CCCCCCeEEEEcCCc--hHHHhcc------ccccCCCCCCCCceEEEE
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRLGLIV--Y--GHRDSPVVPVLVFFF--SKVGQTS------IGLGVEQTALNDGLSLYE 112 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~G~~~--~--~~s~SPIiPV~~g~~--~~~~~~a------~~i~~PtVP~g~~RlRI~ 112 (153)
..++.+++++++..+|++.|++.+... . ..+....+.+.+.+. ..+.++. ..... |.|...+|++
T Consensus 301 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~~~l~~~Gv~v~---~~g~~~lRl~ 377 (403)
T PRK05093 301 NTPEVLEGVKARRQRFVDGLQKINQKYGVFSEIRGMGLLIGAELKPQYKGRARDFLNAAAEEGVMVL---VAGPDVLRFA 377 (403)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHhhCCCeEeEeeCceEEEEEecCcchhHHHHHHHHHHHCCeEEe---cCCCCEEEEe
Confidence 456788999999999999999875321 1 011133444444321 1222332 11222 2366899999
Q ss_pred eeCCCCHHHHHHHHHHHHHHHH
Q psy5049 113 SSHLRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 113 lsA~HT~edId~L~~~~L~~~~ 134 (153)
++..||+++|+.+++ .|..+.
T Consensus 378 ~~~~~~~~~i~~~~~-~l~~~l 398 (403)
T PRK05093 378 PSLVIEEADIDEGLA-RFEKAV 398 (403)
T ss_pred CCCCCCHHHHHHHHH-HHHHHH
Confidence 999999999999988 776554
No 96
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=0.24 Score=43.71 Aligned_cols=89 Identities=16% Similarity=0.047 Sum_probs=60.4
Q ss_pred chHHHHHHHHHHHHHHHHHHhCC-CcccCCC---CCCeEEEEcCCc--hHHHhcc----ccc---cCCCCCC-----CCc
Q psy5049 46 GIRRISVLAHNTRYFRRKLNRLG-LIVYGHR---DSPVVPVLVFFF--SKVGQTS----IGL---GVEQTAL-----NDG 107 (153)
Q Consensus 46 ~~~rr~~L~~ni~~fr~~L~~~G-~~~~~~s---~SPIiPV~~g~~--~~~~~~a----~~i---~~PtVP~-----g~~ 107 (153)
.....++-+++..|+.++|.+.. +.+.+.+ .++++.+-+..- +.+.... +++ ...+.|. -.+
T Consensus 298 ~~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~~~r~~~vsF~v~~~~~~dv~~~L~~~gI~vr~g~~ca~p~~~~~~~~~ 377 (405)
T COG0520 298 MEAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVKGIHPHDVATLLDEKGIAVRAGHHCAQPLHRLLGVDA 377 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEecCCcccCceEEEEEeCCCCHHHHHHHHHhCCeEEEeccccccHHHHhcCCCC
Confidence 46677888899999999999765 5555543 488888877653 3444333 111 2222111 023
Q ss_pred eEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049 108 LSLYESSHLRSANLWNRPHSPSLMAVFR 135 (153)
Q Consensus 108 RlRI~lsA~HT~edId~L~~~~L~~~~~ 135 (153)
.+|+|++-.+|+||||++++ +|+...+
T Consensus 378 ~iR~S~~~YNt~edid~l~~-aL~~~~~ 404 (405)
T COG0520 378 TIRASLHLYNTEEDVDRLLE-ALKKALA 404 (405)
T ss_pred ceEEEEeecCCHHHHHHHHH-HHHHHhh
Confidence 39999999999999999999 8877654
No 97
>PRK05367 glycine dehydrogenase; Provisional
Probab=94.59 E-value=0.25 Score=48.31 Aligned_cols=82 Identities=12% Similarity=-0.039 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcC-CchHHHhcc--ccccCCCCCCCCceEEEEeeCCCCHHHHH
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVF-FFSKVGQTS--IGLGVEQTALNDGLSLYESSHLRSANLWN 123 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g-~~~~~~~~a--~~i~~PtVP~g~~RlRI~lsA~HT~edId 123 (153)
++..++.+.++.|++++|.+.|+.+.......++.+-++ +..+..+.+ ..|..+.+. ...+|||++-.+|++|||
T Consensus 353 ~~Ia~~~~~la~~l~~~L~~~G~~~~~~~~f~~~~~~~~~~~~~i~~~l~~~gi~~~~~~--~~~l~is~~e~~t~~did 430 (954)
T PRK05367 353 KAIARRVHRLAAILAAGLRALGLEVVHDSFFDTLTVEVGGDAAAVLARALAAGINLRRVD--DDHVGISLDETTTREDLA 430 (954)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccCCCCCCCeEEEeCCCCHHHHHHHHHHCCceecccc--CCEEEEEecccCCHHHHH
Confidence 466788999999999999998987643333446655554 333333322 333333332 357999999999999999
Q ss_pred HHHHHHHH
Q psy5049 124 RPHSPSLM 131 (153)
Q Consensus 124 ~L~~~~L~ 131 (153)
++++ ++.
T Consensus 431 ~l~~-~l~ 437 (954)
T PRK05367 431 ALLA-VFG 437 (954)
T ss_pred HHHH-HHc
Confidence 9999 775
No 98
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=94.56 E-value=0.32 Score=42.10 Aligned_cols=89 Identities=12% Similarity=0.061 Sum_probs=56.3
Q ss_pred chHHHHHHHHHHHHHHHHHHhC-CCcccCCC------CCCeEEEEcCC--chHHHhcc--c-cc--cC-----CCC--CC
Q psy5049 46 GIRRISVLAHNTRYFRRKLNRL-GLIVYGHR------DSPVVPVLVFF--FSKVGQTS--I-GL--GV-----EQT--AL 104 (153)
Q Consensus 46 ~~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s------~SPIiPV~~g~--~~~~~~~a--~-~i--~~-----PtV--P~ 104 (153)
.++.+++.++...++++.|.+. |+.+.+.. .++|+.+-+.. ...+.... . .| +. |.+ ..
T Consensus 307 ~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~~~~~~r~~~v~~~~~~~~~~~v~~~L~~~~gI~v~~g~~c~~~~~~~~ 386 (424)
T PLN02855 307 MDRIHEYEVELGTYLYEKLSSVPGVRIYGPKPSEGVGRAALCAFNVEGIHPTDLSTFLDQQHGVAIRSGHHCAQPLHRYL 386 (424)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCcccccCcccEEEEEECCcCHHHHHHHhcccCCEEEechhhhhHHHHHHh
Confidence 3566788888999999999876 66655422 14687777642 22233221 1 22 10 000 01
Q ss_pred C-CceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049 105 N-DGLSLYESSHLRSANLWNRPHSPSLMAVFR 135 (153)
Q Consensus 105 g-~~RlRI~lsA~HT~edId~L~~~~L~~~~~ 135 (153)
| ...+||+++..+|+|||+++++ +|+.+.+
T Consensus 387 g~~~~iRiS~~~ynt~~di~~l~~-~l~~~~~ 417 (424)
T PLN02855 387 GVNASARASLYFYNTKEEVDAFIH-ALKDTIA 417 (424)
T ss_pred CCCCeEEEEeccCCCHHHHHHHHH-HHHHHHH
Confidence 1 2569999999999999999999 8876543
No 99
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=94.54 E-value=0.22 Score=42.87 Aligned_cols=84 Identities=10% Similarity=0.004 Sum_probs=55.2
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCCcccC--CCCCCeEEEEcCCch-HHHhcc---ccccCCCCCCCCceEEEEeeCCCCH
Q psy5049 46 GIRRISVLAHNTRYFRRKLNRLGLIVYG--HRDSPVVPVLVFFFS-KVGQTS---IGLGVEQTALNDGLSLYESSHLRSA 119 (153)
Q Consensus 46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~--~s~SPIiPV~~g~~~-~~~~~a---~~i~~PtVP~g~~RlRI~lsA~HT~ 119 (153)
.++..++.+++..+|.+.|++.+..... .+...++.+.+.+.. ...... ..+..| .+...+||+.+..+|+
T Consensus 305 ~~~l~~~~~~~~~~l~~~L~~l~~~~i~~~~~~g~~~~~~~~~~~~~~~~~l~~~Gv~~~~---~~~~~iRi~p~l~~t~ 381 (396)
T PRK04073 305 EEKLPERSLELGEYFKEQLKEIDNPMIKEVRGRGLFIGVELNEPARPYCEALKEEGLLCKE---THETVIRFAPPLVITK 381 (396)
T ss_pred hcCHHHHHHHHHHHHHHHHHhhcCCcccceecceEEEEEEecchHHHHHHHHHHCCeEEec---CCCCEEEEECCcccCH
Confidence 4567889999999999999987542211 233566666664322 111111 222223 2456899999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy5049 120 NLWNRPHSPSLMAV 133 (153)
Q Consensus 120 edId~L~~~~L~~~ 133 (153)
|||+++++ .|+.+
T Consensus 382 e~i~~~~~-~l~~~ 394 (396)
T PRK04073 382 EELDWAFE-KIKAV 394 (396)
T ss_pred HHHHHHHH-HHHHH
Confidence 99999988 77654
No 100
>PRK04260 acetylornithine aminotransferase; Provisional
Probab=94.44 E-value=0.083 Score=45.00 Aligned_cols=84 Identities=8% Similarity=-0.018 Sum_probs=51.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHhCCCcc--cC--CCCCCeEEEEcCC-chHHHhcc--ccc-cCCCCCCCCceEEEEeeCC
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRLGLIV--YG--HRDSPVVPVLVFF-FSKVGQTS--IGL-GVEQTALNDGLSLYESSHL 116 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~G~~~--~~--~s~SPIiPV~~g~-~~~~~~~a--~~i-~~PtVP~g~~RlRI~lsA~ 116 (153)
..++.+++++++..++++.+.+..... .. .+....+-+-+.. .....+.+ ..+ .. |.+...+|++.++.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~Gi~v~---~~~~~~lR~~~~~~ 358 (375)
T PRK04260 282 LTAGFLEQALENGNYLQEQLQKALQDKETVTTVRGLGYMIGIETTADLSQLVEAARDKGLIVL---TAGTNVIRLLPPLT 358 (375)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEeccceEEEEEecCcHHHHHHHHHhCCCEEe---cCCCCEEEEcCCCc
Confidence 456788999999999999997652211 00 1122333332221 12222222 222 22 34668899999999
Q ss_pred CCHHHHHHHHHHHHHH
Q psy5049 117 RSANLWNRPHSPSLMA 132 (153)
Q Consensus 117 HT~edId~L~~~~L~~ 132 (153)
+|++|++++++ .++.
T Consensus 359 ~t~~~i~~~l~-~l~~ 373 (375)
T PRK04260 359 LTKEEIEQGIA-ILSE 373 (375)
T ss_pred cCHHHHHHHHH-HHHH
Confidence 99999999887 6654
No 101
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=94.37 E-value=0.2 Score=42.74 Aligned_cols=86 Identities=8% Similarity=0.003 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhC----CCcccCCCCCCeEEEEcCC--chHHHhcc------ccccCCCCCCCCceEEEEee
Q psy5049 47 IRRISVLAHNTRYFRRKLNRL----GLIVYGHRDSPVVPVLVFF--FSKVGQTS------IGLGVEQTALNDGLSLYESS 114 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~----G~~~~~~s~SPIiPV~~g~--~~~~~~~a------~~i~~PtVP~g~~RlRI~ls 114 (153)
+...+++.++..++++.|.+. ++.....+...++.|.+.+ ...+..+. ..+..| .+...+||+.+
T Consensus 298 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~l~~~Gv~v~~---~~~~~lRi~~~ 374 (400)
T PTZ00125 298 EKLAENAQRLGEVFRDGLKELLKKSPWVKEIRGKGLLNAIVFDHSDGVNAWDLCLKLKENGLLAKP---THDNIIRFAPP 374 (400)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccEEEEEEEccCcchHHHHHHHHHHHCCeEEee---cCCCEEEEECC
Confidence 456788888999999999764 2211012335666776643 12222222 222344 35678999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhc
Q psy5049 115 HLRSANLWNRPHSPSLMAVFRG 136 (153)
Q Consensus 115 A~HT~edId~L~~~~L~~~~~~ 136 (153)
..+|++||+++++ .++.+.+.
T Consensus 375 ~~~~~~~i~~~l~-~l~~~l~~ 395 (400)
T PTZ00125 375 LVITKEQLDQALE-IIKKVLKS 395 (400)
T ss_pred ccCCHHHHHHHHH-HHHHHHHH
Confidence 9999999999998 77665443
No 102
>TIGR03251 LAT_fam L-lysine 6-transaminase. Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.
Probab=94.35 E-value=0.22 Score=43.84 Aligned_cols=84 Identities=6% Similarity=-0.032 Sum_probs=55.8
Q ss_pred chHHHHHHHHHHHHHHHHHHhC----C-CcccCCCCCCeEEEEcCCchHHHhcc-----ccccCCCCCCCCceEEEEeeC
Q psy5049 46 GIRRISVLAHNTRYFRRKLNRL----G-LIVYGHRDSPVVPVLVFFFSKVGQTS-----IGLGVEQTALNDGLSLYESSH 115 (153)
Q Consensus 46 ~~~rr~~L~~ni~~fr~~L~~~----G-~~~~~~s~SPIiPV~~g~~~~~~~~a-----~~i~~PtVP~g~~RlRI~lsA 115 (153)
.....+++++...+|++.|++. + +.....+...++.|.+.+...+..+. ..+.. +|.|...+|++.+.
T Consensus 337 ~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vrg~G~~~~i~~~~~~~~~~~~~~l~~~Gvl~--~~~g~~~lr~~P~l 414 (431)
T TIGR03251 337 EERLVDNARVQGAHLLARLHELAAEFPHLVSNPRGRGLMCAFDLPSTADRDEVIRQLYREGVLL--LGCGERSIRFRPPL 414 (431)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHhCccceecccccceeEEEEeCCHHHHHHHHHHHHhCCeEE--ecCCCCeEEEECCc
Confidence 4457889999999999999763 2 21111244677788876544333332 22211 23456789999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy5049 116 LRSANLWNRPHSPSLMA 132 (153)
Q Consensus 116 ~HT~edId~L~~~~L~~ 132 (153)
.||++|||++++ ++++
T Consensus 415 ~~t~~eid~~l~-~l~~ 430 (431)
T TIGR03251 415 TVTREEIDAAID-AIRR 430 (431)
T ss_pred cCCHHHHHHHHH-HHHh
Confidence 999999999888 6654
No 103
>PLN03032 serine decarboxylase; Provisional
Probab=94.27 E-value=0.28 Score=42.98 Aligned_cols=81 Identities=11% Similarity=-0.036 Sum_probs=56.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhccccccCCCCCCCCceEEEEeeCCCCHHHHH
Q psy5049 44 ISGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTSIGLGVEQTALNDGLSLYESSHLRSANLWN 123 (153)
Q Consensus 44 ~~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a~~i~~PtVP~g~~RlRI~lsA~HT~edId 123 (153)
+...++.++..++++||.+.|++.|+.+...+.+.+|-+-..+.+...+-|... +.+ .-+|++++..+|++.+|
T Consensus 291 ~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~p~~~~V~f~~~~~~~~~~~w~l~---~~~---~~~hi~vm~~~~~~~id 364 (374)
T PLN03032 291 RGIKRDVQHCMRNAHYLKDRLTEAGLTCRLNELSSTVVFERPMDEAFIKKWQLA---CEG---DIAHVVVMPNVTVEKLD 364 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcEEECCCceEEEEcCCCcHhHhheeeec---ccC---CEEEEEECCCCCHHHHH
Confidence 456788999999999999999999998766666766543333323222222111 112 37999999999999999
Q ss_pred HHHHHHHH
Q psy5049 124 RPHSPSLM 131 (153)
Q Consensus 124 ~L~~~~L~ 131 (153)
++++ -|+
T Consensus 365 ~fi~-dl~ 371 (374)
T PLN03032 365 EFVE-ELV 371 (374)
T ss_pred HHHH-HHh
Confidence 9988 443
No 104
>PLN02409 serine--glyoxylate aminotransaminase
Probab=94.26 E-value=0.4 Score=41.51 Aligned_cols=92 Identities=12% Similarity=-0.103 Sum_probs=62.0
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCCcccCCC---CCCeEE-EEcCCc---hHHHh-cc---ccccCCCC-CCCCceEEEEe
Q psy5049 46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHR---DSPVVP-VLVFFF---SKVGQ-TS---IGLGVEQT-ALNDGLSLYES 113 (153)
Q Consensus 46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s---~SPIiP-V~~g~~---~~~~~-~a---~~i~~PtV-P~g~~RlRI~l 113 (153)
-++++++.+++..++++.|.++|+.+.+.. .+|.+. +.+.+. ..... +. .....+.. +.+...+||+.
T Consensus 271 ~e~i~~~~~~l~~~l~~~L~~~g~~~~~~~~~~~s~~v~~~~~p~~~~~~~l~~~l~~~~~i~i~~G~~~~~~~~~Rig~ 350 (401)
T PLN02409 271 LENVIARHARLGEATRLAVEAWGLKLCTKKPEWRSDTVTAVVVPEGIDSAEIVKNAWKKYNLSLGLGLNKVAGKVFRIGH 350 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCeeccCChhhcccceEEEeCCCCCCHHHHHHHHHHhCCEEEEcCCCcccCCEEEEcC
Confidence 467789999999999999999998765421 265443 444322 22222 11 22333333 32457899999
Q ss_pred eCCCCHHHHHHHHHHHHHHHHhcCC
Q psy5049 114 SHLRSANLWNRPHSPSLMAVFRGGG 138 (153)
Q Consensus 114 sA~HT~edId~L~~~~L~~~~~~~~ 138 (153)
+-.+|++|+..+++ +++.+....|
T Consensus 351 ~g~~~~~~~~~~~~-~~~~~l~~~g 374 (401)
T PLN02409 351 LGNVNELQLLGALA-GVEMVLKDVG 374 (401)
T ss_pred CCCCCHHHHHHHHH-HHHHHHHHcC
Confidence 99999999999999 8887665544
No 105
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=94.25 E-value=0.35 Score=40.22 Aligned_cols=77 Identities=13% Similarity=0.007 Sum_probs=51.9
Q ss_pred chHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcCC-chHHHhcc--------ccccCCCCCCCCceEEEEeeC
Q psy5049 46 GIRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVFF-FSKVGQTS--------IGLGVEQTALNDGLSLYESSH 115 (153)
Q Consensus 46 ~~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g~-~~~~~~~a--------~~i~~PtVP~g~~RlRI~lsA 115 (153)
..+.+++++++..++++.|.+. |+.+. .+.++++.+-+.+ .++..+.. ....|+.+ ..-+|++++
T Consensus 259 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~g~~~~~~~~~~~~~~~~~L~~~gI~v~~g~~f~~~---~~~iRls~~- 333 (346)
T TIGR01141 259 IEKTVEEINAERERLYDGLKKLPGLEVY-PSDANFVLIRFPRDADALFEALLEKGIIVRDLNSYPGL---PNCLRITVG- 333 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEC-CCcCCEEEEecCCCHHHHHHHHHHCCeEEEeCCCcCCC---CCeEEEecC-
Confidence 4567889999999999999887 77653 3456787777653 23222222 12223332 567999975
Q ss_pred CCCHHHHHHHHHHHH
Q psy5049 116 LRSANLWNRPHSPSL 130 (153)
Q Consensus 116 ~HT~edId~L~~~~L 130 (153)
|++|++++++ +|
T Consensus 334 --~~~~i~~~~~-~l 345 (346)
T TIGR01141 334 --TREENDRFLA-AL 345 (346)
T ss_pred --CHHHHHHHHH-Hh
Confidence 8999999887 54
No 106
>PLN02263 serine decarboxylase
Probab=94.13 E-value=0.46 Score=43.07 Aligned_cols=85 Identities=8% Similarity=-0.080 Sum_probs=59.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhccccccCCCCCCCCceEEEEeeCCCCHHHHH
Q psy5049 44 ISGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTSIGLGVEQTALNDGLSLYESSHLRSANLWN 123 (153)
Q Consensus 44 ~~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a~~i~~PtVP~g~~RlRI~lsA~HT~edId 123 (153)
+...++.++..++++||.+.+++.|+.....+.+.+|-+-..+++...+-|.... .+ ..++++++..+|++.+|
T Consensus 358 ~G~~~~i~~~~~~A~~l~~~l~~~g~~~~~~p~s~~V~f~~p~~~~~~~gW~L~~---~~---~~~Hivvmphv~~~~id 431 (470)
T PLN02263 358 RGFQKEVQKCLRNAHYLKDRLREAGISAMLNELSSTVVFERPKDEEFVRRWQLAC---QG---NIAHVVVMPSVTIEKLD 431 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCceEEEEecCchHHhhcceEEcc---CC---CcEEEEEcCCCCHHHHH
Confidence 4557888888899999999999999977666667775544333322222221111 12 24999999999999999
Q ss_pred HHHHHHHHHHHh
Q psy5049 124 RPHSPSLMAVFR 135 (153)
Q Consensus 124 ~L~~~~L~~~~~ 135 (153)
.+++ -|.....
T Consensus 432 ~fi~-DL~~~~~ 442 (470)
T PLN02263 432 YFLK-ELVEKRS 442 (470)
T ss_pred HHHH-HHHHHHh
Confidence 9999 5554444
No 107
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=94.09 E-value=0.38 Score=42.64 Aligned_cols=84 Identities=11% Similarity=-0.000 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCC--CcccC--CCCCCeEEEEcCCc------hHHHhcc-----ccccCCCCCCCCceEEEE
Q psy5049 48 RRISVLAHNTRYFRRKLNRLG--LIVYG--HRDSPVVPVLVFFF------SKVGQTS-----IGLGVEQTALNDGLSLYE 112 (153)
Q Consensus 48 ~rr~~L~~ni~~fr~~L~~~G--~~~~~--~s~SPIiPV~~g~~------~~~~~~a-----~~i~~PtVP~g~~RlRI~ 112 (153)
+..++++++.++|++.|++.. +.+.+ .+...++.|.+-++ +.+..+. ..+.. .|.|...+|++
T Consensus 339 ~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gil~--~~~~~~~lr~~ 416 (441)
T PRK05769 339 GLLENAQKLGEYLRKELKELKEKYEFIGDVRGLGLMIGVELVKDRKEPDPKLRDKVLYEAFKRGLLL--LGAGKSAIRII 416 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCeeeeecceEEEEEEeccCCccccHHHHHHHHHHHHhCCcEE--ecCCCCEEEEe
Confidence 788999999999999998653 22211 23345777766433 2222222 22211 24467899999
Q ss_pred eeCCCCHHHHHHHHHHHHHHHH
Q psy5049 113 SSHLRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 113 lsA~HT~edId~L~~~~L~~~~ 134 (153)
....||++|||++++ +++...
T Consensus 417 p~l~~t~~~id~~~~-~l~~~l 437 (441)
T PRK05769 417 PPLIITEEEADIGLE-ILEEAI 437 (441)
T ss_pred CCCCCCHHHHHHHHH-HHHHHH
Confidence 999999999999998 776554
No 108
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=94.06 E-value=0.26 Score=43.95 Aligned_cols=86 Identities=6% Similarity=-0.164 Sum_probs=59.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHhCC--Cc-cc--CCCCCCeEEEEcCCchHHHhcc------ccccCCCCCCCCceEEEEe
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRLG--LI-VY--GHRDSPVVPVLVFFFSKVGQTS------IGLGVEQTALNDGLSLYES 113 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~G--~~-~~--~~s~SPIiPV~~g~~~~~~~~a------~~i~~PtVP~g~~RlRI~l 113 (153)
+.+.+.++.++.-.+|++.|++.. +. .. ..+..++++|.+.++..+..+. -.+..+..| +...+||..
T Consensus 344 ~~~~l~~~~~~~G~~l~~~L~~l~~~~~~~i~~vRG~Gl~~giel~~~~~~~~i~~~l~~~Gvl~~~~~~-~~~~lr~~P 422 (442)
T TIGR03372 344 LEKNLPAQAAIKGDFLLDGFQQLAAEYPDLIIEARGKGLLMAIEFRDNEIGYAFAKELFQQNILVAGTLN-NAKSIRIEP 422 (442)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecceEEEEEEeCChHHHHHHHHHHHHCCcEEeecCC-CCCEEEEEC
Confidence 445678888999999999998652 21 11 1255789999998765444433 222333333 247899999
Q ss_pred eCCCCHHHHHHHHHHHHHH
Q psy5049 114 SHLRSANLWNRPHSPSLMA 132 (153)
Q Consensus 114 sA~HT~edId~L~~~~L~~ 132 (153)
+..||++|+|++++ ++++
T Consensus 423 pl~~t~~~id~~~~-~l~~ 440 (442)
T TIGR03372 423 PLTITIEQCALVIK-AAKD 440 (442)
T ss_pred CcccCHHHHHHHHH-HHHH
Confidence 99999999999988 6654
No 109
>PRK06108 aspartate aminotransferase; Provisional
Probab=93.94 E-value=0.57 Score=39.46 Aligned_cols=83 Identities=12% Similarity=0.068 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCC-eEEEEcCC---chHHHh-cc----ccccCCC--CCCCCceEEEEee
Q psy5049 47 IRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSP-VVPVLVFF---FSKVGQ-TS----IGLGVEQ--TALNDGLSLYESS 114 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SP-IiPV~~g~---~~~~~~-~a----~~i~~Pt--VP~g~~RlRI~ls 114 (153)
++.+++++++..++.+.|.+. |+.+.. +++. .+-+-+.+ ...... +. +.+++.. .+.+...+|++++
T Consensus 285 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~-p~~g~~~~~~l~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~ 363 (382)
T PRK06108 285 AELVARLRRSRDHLVDALRALPGVEVAK-PDGAMYAFFRIPGVTDSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFA 363 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcccC-CCeeEEEEEeCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec
Confidence 567888899999999999876 665532 3333 33333432 122211 11 2222111 2455789999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q psy5049 115 HLRSANLWNRPHSPSLMAV 133 (153)
Q Consensus 115 A~HT~edId~L~~~~L~~~ 133 (153)
. ++++++..++ .+...
T Consensus 364 ~--~~~~l~~~l~-~l~~~ 379 (382)
T PRK06108 364 R--DPARLDEAVE-RLRRF 379 (382)
T ss_pred C--CHHHHHHHHH-HHHHH
Confidence 8 8999999777 66543
No 110
>PRK08297 L-lysine aminotransferase; Provisional
Probab=93.85 E-value=0.36 Score=42.86 Aligned_cols=87 Identities=8% Similarity=0.015 Sum_probs=59.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHhCC--Cccc---CCCCCCeEEEEcCCchHHHhcc-----cc-ccCCCCCCCCceEEEEe
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRLG--LIVY---GHRDSPVVPVLVFFFSKVGQTS-----IG-LGVEQTALNDGLSLYES 113 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~G--~~~~---~~s~SPIiPV~~g~~~~~~~~a-----~~-i~~PtVP~g~~RlRI~l 113 (153)
+.+++.+++++...+|++.|++.. +... ..+...++.|.+.+......+. .. +..| .|...+||+.
T Consensus 343 ~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~l~~~Gvl~~~---~~~~~lr~~P 419 (443)
T PRK08297 343 EEDGLVENAARQGEYLLARLEELAAEFPAVVSNVRGRGLMCAFDLPTTADRDEVIRRLWEEGVLVLP---CGERSIRFRP 419 (443)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHCCCcceeeeccceEEEEEecCHHHHHHHHHHHHHCCEEEec---CCCCeEEEEC
Confidence 446789999999999999997641 2110 1244678888886644333332 22 2333 3556899999
Q ss_pred eCCCCHHHHHHHHHHHHHHHHh
Q psy5049 114 SHLRSANLWNRPHSPSLMAVFR 135 (153)
Q Consensus 114 sA~HT~edId~L~~~~L~~~~~ 135 (153)
+..||++|||++++ +++...+
T Consensus 420 ~l~~t~~eid~~l~-~l~~~l~ 440 (443)
T PRK08297 420 ALTVTTEEIDAAID-ALRRALP 440 (443)
T ss_pred CccCCHHHHHHHHH-HHHHHHH
Confidence 99999999999998 7766543
No 111
>PLN02590 probable tyrosine decarboxylase
Probab=93.78 E-value=0.32 Score=44.71 Aligned_cols=97 Identities=5% Similarity=-0.190 Sum_probs=67.3
Q ss_pred cccchHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcCC----ch----HHHhcc-------ccccCCCCCCCC
Q psy5049 43 FISGIRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVFF----FS----KVGQTS-------IGLGVEQTALND 106 (153)
Q Consensus 43 ~~~~~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g~----~~----~~~~~a-------~~i~~PtVP~g~ 106 (153)
.+...++.++..++++||.+.+.+. +|.+......+||.+-+.. ++ ...++. .+...||+=.|+
T Consensus 423 ~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~~~l~iVcFr~~~~~~~~~~~~~ln~~l~~~l~~~G~~~vs~t~~~g~ 502 (539)
T PLN02590 423 SENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYFSLVCFRLAPVDGDEDQCNERNRELLAAVNSTGKIFISHTALSGK 502 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhCCCEEEEeeEECCE
Confidence 3456888888899999999999865 5776554555666555432 11 111111 555777777888
Q ss_pred ceEEEEeeCCCC-HHHHHHHHHHHHHHHHhcCCCc
Q psy5049 107 GLSLYESSHLRS-ANLWNRPHSPSLMAVFRGGGPG 140 (153)
Q Consensus 107 ~RlRI~lsA~HT-~edId~L~~~~L~~~~~~~~~~ 140 (153)
.-+|+|+.+..| ++||+.+++ .+.+..+..+++
T Consensus 503 ~~lR~~i~n~~T~~~dv~~~~~-~i~~~a~~~~~~ 536 (539)
T PLN02590 503 FVLRFAVGAPLTEEKHVTEAWQ-IIQKHASKFTRN 536 (539)
T ss_pred EEEEEEecCCCCCHHHHHHHHH-HHHHHHHHhccc
Confidence 999999977766 899999998 777766655543
No 112
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase. Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.
Probab=93.65 E-value=0.59 Score=40.91 Aligned_cols=89 Identities=10% Similarity=-0.055 Sum_probs=58.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhC----C-CcccCCCCCCeEEEEcCCchHHHhcc------ccccCCCCCCCCceEEEE
Q psy5049 44 ISGIRRISVLAHNTRYFRRKLNRL----G-LIVYGHRDSPVVPVLVFFFSKVGQTS------IGLGVEQTALNDGLSLYE 112 (153)
Q Consensus 44 ~~~~~rr~~L~~ni~~fr~~L~~~----G-~~~~~~s~SPIiPV~~g~~~~~~~~a------~~i~~PtVP~g~~RlRI~ 112 (153)
...++..+++.+...++++.|+.+ + +.....+...++.|.+.+...+..+. -.+..|. ..+...+|++
T Consensus 311 i~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~~~~vrg~Gl~~~l~l~~~~~~~~~~~~~~~~Gv~v~~~-~~~~~~lr~~ 389 (412)
T TIGR02407 311 WSDDAFEKAVQRKSEIIQERLDRIVAEYPELIKQVRGRGLMQGIECGDGDLAGKIAKAAFENGLIIETS-GPNDEVIKLL 389 (412)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHhhCCCceEeeecceeEEEEEecChHHHHHHHHHHHHCCCEEecc-CCCCCEEEEE
Confidence 345678888889899999888742 2 21111244567778776654333332 2233443 3345789999
Q ss_pred eeCCCCHHHHHHHHHHHHHHHH
Q psy5049 113 SSHLRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 113 lsA~HT~edId~L~~~~L~~~~ 134 (153)
.+..||++|++++++ +++...
T Consensus 390 p~l~~t~~~i~~~~~-~l~~~l 410 (412)
T TIGR02407 390 PPLTIDEETLQQGLD-ILEQAV 410 (412)
T ss_pred CCCCCCHHHHHHHHH-HHHHHH
Confidence 999999999999988 776554
No 113
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=93.58 E-value=0.62 Score=39.95 Aligned_cols=82 Identities=9% Similarity=-0.048 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCC---chHHHhcc----ccccCCCCCCCCceEEEEeeCCCCH
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFF---FSKVGQTS----IGLGVEQTALNDGLSLYESSHLRSA 119 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~---~~~~~~~a----~~i~~PtVP~g~~RlRI~lsA~HT~ 119 (153)
.+.++.+.++..++.+.|++.|+.....+.+..+-+-+.+ ........ +.+++-+.+.+..-+||++. ++
T Consensus 290 ~~~~~~~~~~r~~l~~~L~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~~~~~~~lRis~~---~~ 366 (380)
T PLN03026 290 EDVKNALVEERERLFGLLKEVPFLEPYPSDANFILCRVTSGRDAKKLKEDLAKMGVMVRHYNSKELKGYIRVSVG---KP 366 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCeECCCCCeEEEEECCCCCCHHHHHHHHHHCCeEEEECCCCCCCCEEEEecC---CH
Confidence 4567788888899999999887532234557776666652 22222221 33443222445678999988 78
Q ss_pred HHHHHHHHHHHHH
Q psy5049 120 NLWNRPHSPSLMA 132 (153)
Q Consensus 120 edId~L~~~~L~~ 132 (153)
+|++++++ +++.
T Consensus 367 ~~~~~l~~-al~~ 378 (380)
T PLN03026 367 EHTDALME-ALKQ 378 (380)
T ss_pred HHHHHHHH-HHHH
Confidence 89999888 7764
No 114
>PRK06541 hypothetical protein; Provisional
Probab=93.37 E-value=0.42 Score=42.67 Aligned_cols=88 Identities=13% Similarity=0.037 Sum_probs=57.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHhCC-Cccc--CCCCCCeEEEEcCCch------------HHH--hcc-----c-cccCCC
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRLG-LIVY--GHRDSPVVPVLVFFFS------------KVG--QTS-----I-GLGVEQ 101 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~G-~~~~--~~s~SPIiPV~~g~~~------------~~~--~~a-----~-~i~~Pt 101 (153)
..+..+++++++..+|++.|++.. ..+. ..+...++.|.+.++. ... .+. . .+..|
T Consensus 343 ~~~~~~~~~~~~g~~l~~~L~~l~~~~~v~~vrg~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~- 421 (460)
T PRK06541 343 EREGLLDHVRDNEPAFRATLEKLLDLPIVGDVRGDGYFYGIELVKDKATKETFTDDESERLLRGFLSPALFEAGLYCRA- 421 (460)
T ss_pred HhccHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecceEEEEEEecCcccccCCcchhhhhhHHHHHHHHHHhCCeEEEe-
Confidence 445688999999999999998762 2110 1133456666653211 001 111 2 22334
Q ss_pred CCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049 102 TALNDGLSLYESSHLRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 102 VP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~ 134 (153)
+|.|...+||+....||++|||.+++ +++...
T Consensus 422 ~~~g~~~lrl~Ppl~~t~~~id~~~~-~l~~~l 453 (460)
T PRK06541 422 DDRGDPVVQLAPPLISGQEEFDEIEQ-ILRSVL 453 (460)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHH-HHHHHH
Confidence 57778899999999999999999998 776544
No 115
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=92.98 E-value=0.71 Score=39.42 Aligned_cols=86 Identities=12% Similarity=0.050 Sum_probs=51.2
Q ss_pred chHHHHHHHHHHHHHHHHHHhCC--Cc-ccC--CCCCCeEEEEcCCc-hHHHhcc--ccccCCCCCCCCceEEEEeeCCC
Q psy5049 46 GIRRISVLAHNTRYFRRKLNRLG--LI-VYG--HRDSPVVPVLVFFF-SKVGQTS--IGLGVEQTALNDGLSLYESSHLR 117 (153)
Q Consensus 46 ~~~rr~~L~~ni~~fr~~L~~~G--~~-~~~--~s~SPIiPV~~g~~-~~~~~~a--~~i~~PtVP~g~~RlRI~lsA~H 117 (153)
.++..++++++..+|++.|++.. +. +.. .+...++.+-+..+ ....... ..+. ++|.+...+||+.+..+
T Consensus 293 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~l~~~GV~--~~p~~~~~lR~~p~~~~ 370 (389)
T PRK01278 293 APGFLDNVQRMGLYLKQKLEGLVDRFPDVIEEVRGKGLLLGLKCVVPNRDLVQALRDEGLL--TVGAGDNVVRLLPPLII 370 (389)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhCCCceeeEecccEEEEEEEecCHHHHHHHHHHCCeE--EeecCCCEEEEeCCccc
Confidence 45678899999999999998642 11 100 11122333323221 2222111 2221 23446789999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy5049 118 SANLWNRPHSPSLMAVF 134 (153)
Q Consensus 118 T~edId~L~~~~L~~~~ 134 (153)
|++||+++++ .|+...
T Consensus 371 ~~~~i~~~l~-~l~~~l 386 (389)
T PRK01278 371 TEEEIDEALE-RLERAA 386 (389)
T ss_pred CHHHHHHHHH-HHHHHH
Confidence 9999999888 776544
No 116
>PRK04612 argD acetylornithine transaminase protein; Provisional
Probab=92.69 E-value=0.65 Score=40.73 Aligned_cols=87 Identities=9% Similarity=0.014 Sum_probs=58.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhCC--Cccc--CCCCCCeEEEEcCCc--hHHHhcc------ccccCCCCCCCCceEEE
Q psy5049 44 ISGIRRISVLAHNTRYFRRKLNRLG--LIVY--GHRDSPVVPVLVFFF--SKVGQTS------IGLGVEQTALNDGLSLY 111 (153)
Q Consensus 44 ~~~~~rr~~L~~ni~~fr~~L~~~G--~~~~--~~s~SPIiPV~~g~~--~~~~~~a------~~i~~PtVP~g~~RlRI 111 (153)
.+.++++++++++..+|++.|+++. +++. ..+...++.|.+..+ ..+..+. -.+.+ |.|...+|+
T Consensus 303 ~~~~~l~~~~~~~g~~l~~~l~~l~~~~~~i~~vrg~Gl~~~i~~~~~~~~~a~~i~~~l~~~Gvlv~---~~g~~~lRl 379 (408)
T PRK04612 303 LASPQIAANVARQSAALRAGLEALNAEFGVFAQVRGRGLMLGAVLAPAHAGQAGAILDLAAEHGLLLL---QAGPDVLRF 379 (408)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHhhCCCeeeeeccceEEEEEecCchhhHHHHHHHHHHHCCeEEe---eCCCCEEEE
Confidence 3457899999999999999998642 1111 124456777776432 2222222 22233 346789999
Q ss_pred EeeCCCCHHHHHHHHHHHHHHHH
Q psy5049 112 ESSHLRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 112 ~lsA~HT~edId~L~~~~L~~~~ 134 (153)
+.+..+|++|||++++ .++...
T Consensus 380 ~Ppl~it~eeid~~l~-~l~~~l 401 (408)
T PRK04612 380 VPALNLTDAELADGLA-RLRLAL 401 (408)
T ss_pred cCCccCCHHHHHHHHH-HHHHHH
Confidence 9999999999999988 775544
No 117
>PLN02760 4-aminobutyrate:pyruvate transaminase
Probab=92.29 E-value=0.24 Score=44.93 Aligned_cols=80 Identities=6% Similarity=-0.023 Sum_probs=51.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEE------EEcC----CchH-----------HHhcc-----ccc
Q psy5049 44 ISGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVP------VLVF----FFSK-----------VGQTS-----IGL 97 (153)
Q Consensus 44 ~~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiP------V~~g----~~~~-----------~~~~a-----~~i 97 (153)
.+.++..++++++..+|++.|++. .++||++ ++++ ++.. +..+. ..+
T Consensus 384 i~~~~l~~~~~~~g~~l~~~L~~l-------~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gv 456 (504)
T PLN02760 384 YKERNIPEHVNKIAPRFQDGIKAF-------SGSPIIGEIRGTGLILGTEFVDNKSPNDPFPAEWGVGAYFGAECKKRGM 456 (504)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHH-------hcCCCeeeEEeCceEEEEEEecCCcccccccchhHHHHHHHHHHHhCCc
Confidence 345578999999999999999874 1134443 2332 3211 11121 222
Q ss_pred -cCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049 98 -GVEQTALNDGLSLYESSHLRSANLWNRPHSPSLMAVFR 135 (153)
Q Consensus 98 -~~PtVP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~ 135 (153)
..| .| ..+|++....||++|||.+++ +++...+
T Consensus 457 l~~~---~g-~~lrl~Ppl~it~eeid~~~~-~l~~al~ 490 (504)
T PLN02760 457 LVRV---AG-DNIMMSPPLIITPEEVDELIS-IYGKALK 490 (504)
T ss_pred EEEe---cC-CEEEEECCCCCCHHHHHHHHH-HHHHHHH
Confidence 233 23 578999999999999999998 7765543
No 118
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=91.99 E-value=1.7 Score=36.44 Aligned_cols=81 Identities=15% Similarity=0.064 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEc-CCchHHHhcc----ccc-cCCCCCCCCceEEEEeeCCCCHH
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLV-FFFSKVGQTS----IGL-GVEQTALNDGLSLYESSHLRSAN 120 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~-g~~~~~~~~a----~~i-~~PtVP~g~~RlRI~lsA~HT~e 120 (153)
...+++++++..++.+.|++.|+... +...+...+- .+.....+.+ +.+ .|. ....+||++++ +++
T Consensus 242 ~~~~~~~~~~r~~l~~~L~~~~~~~~--~~~~~f~~~~~~~~~~~~~~l~~~gi~v~~f~----~~~~iRis~~~--~~~ 313 (330)
T PRK05664 242 RRQRERLLAASQRLAALLRRHGLTPA--GGCALFQWVRTEDAAALHEFLARRGILTRLFE----QPASLRFGLPA--DEA 313 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCccc--CCcceEEEEecCCHHHHHHHHHHCCeEEEECC----CCCeEEEECCC--CHH
Confidence 56788999999999999999887542 2233333332 2333333322 222 232 23689999997 689
Q ss_pred HHHHHHHHHHHHHHhc
Q psy5049 121 LWNRPHSPSLMAVFRG 136 (153)
Q Consensus 121 dId~L~~~~L~~~~~~ 136 (153)
|++++.+ +|+.+.+.
T Consensus 314 ~~~~l~~-al~~~~~~ 328 (330)
T PRK05664 314 DWARLDQ-ALLAYRKE 328 (330)
T ss_pred HHHHHHH-HHHHHHhh
Confidence 9999999 88877654
No 119
>PLN02724 Molybdenum cofactor sulfurase
Probab=91.94 E-value=0.72 Score=44.01 Aligned_cols=89 Identities=16% Similarity=0.128 Sum_probs=59.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHhCC-------CcccCCC--------CCCeEEEEcCCch-------HHHhcc----ccc-
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRLG-------LIVYGHR--------DSPVVPVLVFFFS-------KVGQTS----IGL- 97 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~G-------~~~~~~s--------~SPIiPV~~g~~~-------~~~~~a----~~i- 97 (153)
..+..++++++...|+.+.|.++. +.+++.. ..||+++-+.+.. .+..++ +.+
T Consensus 337 g~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~~v~~~~v~~l~~~~gI~vR 416 (805)
T PLN02724 337 TISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGSWVGHREVEKLASLSGIQLR 416 (805)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCCEeCHHHHHHHHHhcCcEEe
Confidence 346778889999999999998763 4444422 4689888776522 122221 000
Q ss_pred -----cCCCCC-----------------------------CCCceEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049 98 -----GVEQTA-----------------------------LNDGLSLYESSHLRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 98 -----~~PtVP-----------------------------~g~~RlRI~lsA~HT~edId~L~~~~L~~~~ 134 (153)
.++.+- ..++-+|+|+...+|.||||++++ +|+...
T Consensus 417 ~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~-~l~~~~ 486 (805)
T PLN02724 417 TGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFID-FIISSF 486 (805)
T ss_pred eccccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCCHHHHHHHHH-HHHHHh
Confidence 112110 014789999999999999999999 887755
No 120
>PLN02452 phosphoserine transaminase
Probab=91.91 E-value=2.2 Score=37.07 Aligned_cols=89 Identities=7% Similarity=-0.181 Sum_probs=61.5
Q ss_pred chHHHHHHHHHHHHHHHHHHhC-CCcccCC---CCCC-eEEEEcCCchHHHhcc------ccccCCCCCCCCceEEEEee
Q psy5049 46 GIRRISVLAHNTRYFRRKLNRL-GLIVYGH---RDSP-VVPVLVFFFSKVGQTS------IGLGVEQTALNDGLSLYESS 114 (153)
Q Consensus 46 ~~~rr~~L~~ni~~fr~~L~~~-G~~~~~~---s~SP-IiPV~~g~~~~~~~~a------~~i~~PtVP~g~~RlRI~ls 114 (153)
-+.+.++-+++..++++.|.+. |+..... ..|+ ++++.+.+.+...++. ..+.+|. -...+.+|+++=
T Consensus 264 l~~~~~r~~~~a~~l~~~l~~~~G~y~~~~~~~~rs~~~vsF~~~~~~~~~~f~~~~~~~g~~~~~G-~r~~gg~R~s~y 342 (365)
T PLN02452 264 LKAMEKRNIRKADLLYDAIDESNGFYVCPVEKSVRSLMNVPFTLGGSELEAEFVKEAAKAGMVQLKG-HRSVGGMRASIY 342 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccCCCChHHhCCeEEEEEcCCchhHHHHHHHHHHCCCcccCC-ccccCceEEECc
Confidence 3677788889999999999874 6621111 1244 8888877754333332 4445555 222445999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhc
Q psy5049 115 HLRSANLWNRPHSPSLMAVFRG 136 (153)
Q Consensus 115 A~HT~edId~L~~~~L~~~~~~ 136 (153)
.+.+.|+++.|++ +++...+.
T Consensus 343 na~~~~~v~~L~~-~m~~f~~~ 363 (365)
T PLN02452 343 NAMPLAGVEKLVA-FMKDFQAK 363 (365)
T ss_pred CCCCHHHHHHHHH-HHHHHHHh
Confidence 9999999999999 88877653
No 121
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=91.86 E-value=0.39 Score=42.62 Aligned_cols=85 Identities=9% Similarity=-0.037 Sum_probs=51.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHhCC-Cc----ccCCC---CCCeEEEEcCCchHHHhcc-----ccc-cCCCCCCCCceEE
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRLG-LI----VYGHR---DSPVVPVLVFFFSKVGQTS-----IGL-GVEQTALNDGLSL 110 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~G-~~----~~~~s---~SPIiPV~~g~~~~~~~~a-----~~i-~~PtVP~g~~RlR 110 (153)
+.+.+.++++++..++++.|++++ +. +-|.+ ..++++...++...+..+. ..+ ..+ . ...+|
T Consensus 340 ~~~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Gl~~~~~l~~~~~~~~~~~~~~~~~l~~~Gvl~~~---~-~~~lr 415 (442)
T PRK13360 340 EREGLLTRAARLAPYWEDALHSLRDAPHVIDIRNLGLVGAVELAPRDGKPGKRAYEVFLKCFEKGLMIRY---T-GDILA 415 (442)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHhhcCCCeeeeeccceEEEEEEecCCCCcchhHHHHHHHHHHCCcEEEe---c-CCEEE
Confidence 345688999999999999998653 21 11111 1233332222222222222 222 222 2 36899
Q ss_pred EEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049 111 YESSHLRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 111 I~lsA~HT~edId~L~~~~L~~~~ 134 (153)
|+....||++|||++++ ++++..
T Consensus 416 ~~Ppl~~t~~eid~~~~-~l~~~l 438 (442)
T PRK13360 416 LSPPLIIEEAQIDELFD-ILAQAL 438 (442)
T ss_pred EeCCCccCHHHHHHHHH-HHHHHH
Confidence 99999999999999998 776554
No 122
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=91.84 E-value=1.8 Score=36.57 Aligned_cols=79 Identities=10% Similarity=-0.070 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCC-CcccCCCCCCeEEEEcCCchHHHhcc----ccccCCCCCCCCceEEEEeeCCCCHHHH
Q psy5049 48 RRISVLAHNTRYFRRKLNRLG-LIVYGHRDSPVVPVLVFFFSKVGQTS----IGLGVEQTALNDGLSLYESSHLRSANLW 122 (153)
Q Consensus 48 ~rr~~L~~ni~~fr~~L~~~G-~~~~~~s~SPIiPV~~g~~~~~~~~a----~~i~~PtVP~g~~RlRI~lsA~HT~edI 122 (153)
+.++.++++-.++.+.|++.+ +.+. .+.+.-+-+-+.+.+...+.. +.++.-.-+.+..-+||+++ ++||+
T Consensus 267 ~~~~~~~~~r~~l~~~L~~~~~~~~~-~~~g~f~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~lRis~~---~~e~~ 342 (354)
T PRK04635 267 FQVLDLNAQGARLQAALSMYGGAKVL-EGNGNYVLAKFDDVDAVFKALWDAGIVARAYKDPRLANCIRFSFS---NRAET 342 (354)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCceEC-CCCCcEEEEECCCHHHHHHHHHHCCEEEEECCCCCCCCeEEEEeC---CHHHH
Confidence 345667777788999999876 5543 344443323233433333322 33332111333467999985 78999
Q ss_pred HHHHHHHHH
Q psy5049 123 NRPHSPSLM 131 (153)
Q Consensus 123 d~L~~~~L~ 131 (153)
+++++ +|+
T Consensus 343 ~~l~~-al~ 350 (354)
T PRK04635 343 DKLIG-LIR 350 (354)
T ss_pred HHHHH-HHH
Confidence 99998 665
No 123
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=91.81 E-value=1.2 Score=37.56 Aligned_cols=80 Identities=11% Similarity=-0.002 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcCCchHHHhcc----ccccCCCCC-CCCceEEEEeeCCCCHH
Q psy5049 47 IRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVFFFSKVGQTS----IGLGVEQTA-LNDGLSLYESSHLRSAN 120 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g~~~~~~~~a----~~i~~PtVP-~g~~RlRI~lsA~HT~e 120 (153)
.+.++.++++-.++.+.|.+. |+.....+.+.-+-+-+.+.+...+.. +.++.+... ....-+||++. +++
T Consensus 265 ~~~~~~~~~~r~~l~~~L~~~~~~~~~~ps~~nfi~~~~~~~~~l~~~L~~~gi~vr~~~~~~~~~~~iRis~~---~~~ 341 (351)
T PRK01688 265 RERVAEINANRQWLIAALKEIPCVEQVFDSETNYILARFTASSAVFKSLWDQGIILRDQNKQPGLSNCLRITIG---TRE 341 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcEEEEEcCCHHHHHHHHHHCCeEEEECCCcCCCCCeEEEeCC---CHH
Confidence 345667777788899999887 443123455665555444434333322 444443322 22467999987 789
Q ss_pred HHHHHHHHHH
Q psy5049 121 LWNRPHSPSL 130 (153)
Q Consensus 121 dId~L~~~~L 130 (153)
|++++++ +|
T Consensus 342 e~~~l~~-al 350 (351)
T PRK01688 342 ECQRVID-AL 350 (351)
T ss_pred HHHHHHH-hh
Confidence 9999988 65
No 124
>PLN02880 tyrosine decarboxylase
Probab=91.70 E-value=0.68 Score=41.79 Aligned_cols=88 Identities=7% Similarity=-0.159 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcCCc----h----HHHhcc-------ccccCCCCCCCCceEE
Q psy5049 47 IRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVFFF----S----KVGQTS-------IGLGVEQTALNDGLSL 110 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g~~----~----~~~~~a-------~~i~~PtVP~g~~RlR 110 (153)
.++.++..+++++|.+.+.+. ++.+....+.+|+.+-+... + ...++. .....+++=.|+.-+|
T Consensus 379 ~~~i~~~~~lA~~~~~~l~~~~~~el~~~~~~~iv~Fr~~~~~~~~~~~~~~n~~l~~~l~~~g~~~v~~t~~~g~~~lR 458 (490)
T PLN02880 379 QSYIRNHIKLAKEFEQLVAQDSRFEVVTPRIFSLVCFRLVPPKNNEDNGNKLNHDLLDAVNSSGKIFISHTVLSGKYVLR 458 (490)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEecCCceEEEEEEEeCCCCChhhHHHHHHHHHHHHHhCCCEEEEEEEECCEEEEE
Confidence 444444449999999999754 77776555677777665431 1 011111 3334445557889999
Q ss_pred EEeeCCCCH-HHHHHHHHHHHHHHHh
Q psy5049 111 YESSHLRSA-NLWNRPHSPSLMAVFR 135 (153)
Q Consensus 111 I~lsA~HT~-edId~L~~~~L~~~~~ 135 (153)
+|++..+|. +|++.+++ .+.++.+
T Consensus 459 ~~~~n~~tt~~di~~~~~-~i~~~~~ 483 (490)
T PLN02880 459 FAVGAPLTEERHVTAAWK-VLQDEAS 483 (490)
T ss_pred EEecCCCCCHHHHHHHHH-HHHHHHH
Confidence 999999996 99999988 6665543
No 125
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=91.69 E-value=2.2 Score=36.64 Aligned_cols=29 Identities=0% Similarity=-0.026 Sum_probs=25.2
Q ss_pred CceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049 106 DGLSLYESSHLRSANLWNRPHSPSLMAVFR 135 (153)
Q Consensus 106 ~~RlRI~lsA~HT~edId~L~~~~L~~~~~ 135 (153)
.+.+|++++..+|+||||++++ +|+.+.+
T Consensus 348 ~~~vR~S~~~~~t~edid~l~~-~l~~~~~ 376 (402)
T TIGR02006 348 HSSIRFTIGRFTTEEEIDYAVK-LVKSAID 376 (402)
T ss_pred CceEEEEecCCCCHHHHHHHHH-HHHHHHH
Confidence 4789999999999999999999 8766553
No 126
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=91.55 E-value=2.2 Score=35.82 Aligned_cols=82 Identities=7% Similarity=-0.121 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCC-chHHHhcc----ccccCCCCCCCCceEEEEeeCCCCHHH
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFF-FSKVGQTS----IGLGVEQTALNDGLSLYESSHLRSANL 121 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~-~~~~~~~a----~~i~~PtVP~g~~RlRI~lsA~HT~ed 121 (153)
+..+++++++..++.+.|.+.|+.+. .+.+..+.+-++. .....+.. +.+++-.......-+||+++ +++|
T Consensus 272 ~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~g~~i~~~~~~~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~---~~~~ 347 (359)
T PRK03158 272 KECVEKNAEGLEQYYAFCKEYGLFYY-PSQTNFIFVDTGRDANELFEALLKKGYIVRSGAALGFPTGVRITIG---LKEQ 347 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCeeC-CCcCcEEEEECCCCHHHHHHHHHHCCeEEeeCCCCCCCCeEEEecC---CHHH
Confidence 34456677788888888888887653 3556666665542 22222222 22222111112357999987 8999
Q ss_pred HHHHHHHHHHHH
Q psy5049 122 WNRPHSPSLMAV 133 (153)
Q Consensus 122 Id~L~~~~L~~~ 133 (153)
++++++ +|+.+
T Consensus 348 ~~~l~~-al~~~ 358 (359)
T PRK03158 348 NDKIIE-LLKEL 358 (359)
T ss_pred HHHHHH-HHHHh
Confidence 999998 77654
No 127
>PRK05764 aspartate aminotransferase; Provisional
Probab=91.50 E-value=2.6 Score=35.69 Aligned_cols=81 Identities=11% Similarity=0.030 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCC-eEEEEcCCc--------hHHH-hcc--------ccccCCCCCCCCc
Q psy5049 47 IRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSP-VVPVLVFFF--------SKVG-QTS--------IGLGVEQTALNDG 107 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SP-IiPV~~g~~--------~~~~-~~a--------~~i~~PtVP~g~~ 107 (153)
.+.+++++++..++++.|.+. |+.+.. ++.. .+-+-+... .+.. .+. .+..|+. ..
T Consensus 291 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~----~~ 365 (393)
T PRK05764 291 EEMRQAFEERRDLMVDGLNEIPGLECPK-PEGAFYVFPNVSKLLGKSITDSLEFAEALLEEAGVAVVPGIAFGA----PG 365 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCcccC-CCcceEEEEecccccccccCCHHHHHHHHHHhCCEEEccccccCC----CC
Confidence 467888889999999999987 776533 3332 222222211 2222 111 2223332 47
Q ss_pred eEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049 108 LSLYESSHLRSANLWNRPHSPSLMAVFR 135 (153)
Q Consensus 108 RlRI~lsA~HT~edId~L~~~~L~~~~~ 135 (153)
.+||++. +++++++..++ .+..+.+
T Consensus 366 ~vRis~~--~~~~~~~~~i~-~l~~~~~ 390 (393)
T PRK05764 366 YVRLSYA--TSLEDLEEGLE-RIERFLE 390 (393)
T ss_pred EEEEEec--CCHHHHHHHHH-HHHHHHH
Confidence 8999976 58999999888 7766544
No 128
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=91.47 E-value=0.7 Score=40.99 Aligned_cols=88 Identities=8% Similarity=0.082 Sum_probs=51.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHhC--CCcccC--CCCCCeEEEEc--------CCchHHHhcc-----ccccCCCCCCCCc
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRL--GLIVYG--HRDSPVVPVLV--------FFFSKVGQTS-----IGLGVEQTALNDG 107 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~--G~~~~~--~s~SPIiPV~~--------g~~~~~~~~a-----~~i~~PtVP~g~~ 107 (153)
+.+++.++++++..+|++.|++. .+.+.+ .+....+-+.+ ++...+..+. ..+... +.+..
T Consensus 324 ~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Gl~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~--~~~~~ 401 (445)
T PRK08593 324 EDESLLQRSAEKGEYARKRFDQWVSKYNFVGDVRGYGLSIGIDIVSDKKLKTRDNEAALKICNYCFEHGVVII--AVAGN 401 (445)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccceEEEEEEecCCCcCCCcHHHHHHHHHHHHHCCeEEe--ccCCC
Confidence 44578999999999999999863 111100 01111122222 1222233332 222111 11347
Q ss_pred eEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049 108 LSLYESSHLRSANLWNRPHSPSLMAVFR 135 (153)
Q Consensus 108 RlRI~lsA~HT~edId~L~~~~L~~~~~ 135 (153)
++|++.+..||++|||++++ +++...+
T Consensus 402 ~lr~~p~l~~t~~~id~~~~-~l~~~l~ 428 (445)
T PRK08593 402 VLRFQPPLVITYEQLDTALN-TIEQAFT 428 (445)
T ss_pred EEEEECCCccCHHHHHHHHH-HHHHHHH
Confidence 89999999999999999998 7765543
No 129
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=91.45 E-value=0.23 Score=45.29 Aligned_cols=57 Identities=14% Similarity=0.024 Sum_probs=39.7
Q ss_pred HHHHHHHhHHHHHHHhhhcccEEe-ecCCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHhCCCcc
Q psy5049 3 LISVLAQNTRYFRRKLNRLGLILY-VLFQAQTKPPRSHCICFISGIRRISVLAHNTRYFRRKLNRLGLIV 71 (153)
Q Consensus 3 ~~~~~~~~~~~~~~~l~~~g~~~~-~~~~~~~~p~~~~~l~~~~~~~rr~~L~~ni~~fr~~L~~~G~~~ 71 (153)
..+++.+|+++|+++|++.||.+. |..++|+.|+ .....+ .....+.+.|.+.|+.+
T Consensus 340 y~~~l~~Na~~La~~L~~~G~~vv~ggTdshIV~V----~lg~~~--------~~g~~a~~~L~e~GI~v 397 (493)
T PRK13580 340 YAQQVVDNARALAEGFLKRGARLVTGGTDNHLVLI----DVTSFG--------LTGRQAESALLDAGIVT 397 (493)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCCCCCCCEEEE----EeCCHH--------HHHHHHHHHHHHCCeEE
Confidence 467899999999999999999985 4456777774 222221 11234566788888765
No 130
>PRK09082 methionine aminotransferase; Validated
Probab=91.45 E-value=1.3 Score=37.89 Aligned_cols=79 Identities=8% Similarity=-0.111 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcC-----CchHHHh-cc--------ccccCCCCCCCCceEEEE
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVF-----FFSKVGQ-TS--------IGLGVEQTALNDGLSLYE 112 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g-----~~~~~~~-~a--------~~i~~PtVP~g~~RlRI~ 112 (153)
.++++.++++..++.+.|++.|+.+.....+..+.+-+. +...... ++ +...|...|.+...+||+
T Consensus 289 ~~~~~~~~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~ 368 (386)
T PRK09082 289 LELPAFYQAKRDRFRAALANSRFKLLPCEGTYFQLVDYSAISDLDDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLC 368 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccCCCeeEEEEEeccccCCCCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEE
Confidence 445777889999999999988876533222334444432 1222222 11 222454445667789999
Q ss_pred eeCCCCHHHHHHHHH
Q psy5049 113 SSHLRSANLWNRPHS 127 (153)
Q Consensus 113 lsA~HT~edId~L~~ 127 (153)
++. ++++++..++
T Consensus 369 ~~~--~~~~l~~~~~ 381 (386)
T PRK09082 369 FAK--QEETLDAAAE 381 (386)
T ss_pred ecC--CHHHHHHHHH
Confidence 974 6888888665
No 131
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=91.39 E-value=0.9 Score=44.77 Aligned_cols=84 Identities=13% Similarity=0.148 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcccCCC-CCC-----eEEEE-c----C-CchHHHh-cc-ccccCCCC--CCCCceEEE
Q psy5049 48 RRISVLAHNTRYFRRKLNRLGLIVYGHR-DSP-----VVPVL-V----F-FFSKVGQ-TS-IGLGVEQT--ALNDGLSLY 111 (153)
Q Consensus 48 ~rr~~L~~ni~~fr~~L~~~G~~~~~~s-~SP-----IiPV~-~----g-~~~~~~~-~a-~~i~~PtV--P~g~~RlRI 111 (153)
+..++...|++|++++|.+ ++.+.-.+ ..| |+.+- + | +.....+ +. ..|-.|++ |. ...+||
T Consensus 806 ~~a~~a~~nAnYl~~rL~~-~~~~~~~~~~~~~~hEfv~~~~~l~~~~g~~~~di~krL~d~Gihapt~~~pv-~~~lmi 883 (993)
T PLN02414 806 DASKIAILNANYMAKRLEG-HYPVLFRGKNGTCAHEFIIDLRPFKNTAGIEPEDVAKRLMDYGFHAPTMSWPV-PGTLMI 883 (993)
T ss_pred HHHHHHHHHHHHHHHHHHh-hCCccccCCCCCeeeeEEEeccccccccCCCHHHHHHHHHHcCcEEeeecccc-CCEEEE
Confidence 3467788899999999986 55442111 112 22222 0 0 0011111 11 33434433 43 678999
Q ss_pred EeeCCCCHHHHHHHHHHHHHHHH
Q psy5049 112 ESSHLRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 112 ~lsA~HT~edId~L~~~~L~~~~ 134 (153)
+.|-.+|++|||++++ ++..+.
T Consensus 884 epTE~~skeelDrf~~-al~~i~ 905 (993)
T PLN02414 884 EPTESESKAELDRFCD-ALISIR 905 (993)
T ss_pred EeeeeCCHHHHHHHHH-HHHHHH
Confidence 9999999999999999 665444
No 132
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=91.25 E-value=2.3 Score=35.92 Aligned_cols=78 Identities=6% Similarity=-0.075 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEE-EEcCCch-HHHhcc----ccccC--CCCCCCCceEEEEeeCCCC
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVP-VLVFFFS-KVGQTS----IGLGV--EQTALNDGLSLYESSHLRS 118 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiP-V~~g~~~-~~~~~a----~~i~~--PtVP~g~~RlRI~lsA~HT 118 (153)
...++.++++..++.+.|.+.|+.+. .+++.++- +.++.+. ...+.. +.+.+ +..+.+...+||++++ +
T Consensus 269 ~~~~~~~~~~~~~~~~~L~~~g~~~~-~p~~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~iRis~~~--~ 345 (357)
T TIGR03539 269 AEQKARYAARRAQLKPALEKAGFRID-HSEAGLYLWATRGEDAWDTVDRLAELGILVAPGDFYGPAGSQHVRVALTA--T 345 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCc-CCCccEEEEEECCCCHHHHHHHHHhCCEEECCccccCCCCCCeEEEEecC--C
Confidence 45677888899999999999887753 34455433 3333322 122211 22221 1134566799999987 5
Q ss_pred HHHHHHHHH
Q psy5049 119 ANLWNRPHS 127 (153)
Q Consensus 119 ~edId~L~~ 127 (153)
++++++.++
T Consensus 346 ~~~i~~~~~ 354 (357)
T TIGR03539 346 DERIAAAVA 354 (357)
T ss_pred HHHHHHHHH
Confidence 899998766
No 133
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=91.13 E-value=1.3 Score=36.97 Aligned_cols=78 Identities=17% Similarity=0.019 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHH-hCCCcccCCCCCCeEEEEcCC--chHHHhcc----cc----ccCCCCCCCCceEEEEeeCCCC
Q psy5049 50 ISVLAHNTRYFRRKLN-RLGLIVYGHRDSPVVPVLVFF--FSKVGQTS----IG----LGVEQTALNDGLSLYESSHLRS 118 (153)
Q Consensus 50 r~~L~~ni~~fr~~L~-~~G~~~~~~s~SPIiPV~~g~--~~~~~~~a----~~----i~~PtVP~g~~RlRI~lsA~HT 118 (153)
.+++.+.....++.+. .+++.+. .+.++.+.+-+.. .....+.. .. ..|+ ..+...+||+++ +
T Consensus 272 ~~~~~~~~~~~r~~l~~~l~~~~~-~~~~~~i~~~~~~~~~~~~~~~l~~~gv~v~~~~~f~--~~~~~~lRis~~---~ 345 (361)
T PRK00950 272 IEKSIEHGIKSREYLYNELPFKVY-PSEANFVLVDVTPMTAKEFCEELLKRGVIVRDCTSFR--GLGDYYIRVSIG---T 345 (361)
T ss_pred HHHHHHHHHHHHHHHHhhcCeeEC-CCcceEEEEECCCCCHHHHHHHHHHCCEEEeeCCccC--CCCCCeEEEECC---C
Confidence 3444444444444443 2334432 3556776666532 22222221 22 2343 234678999987 7
Q ss_pred HHHHHHHHHHHHHHHH
Q psy5049 119 ANLWNRPHSPSLMAVF 134 (153)
Q Consensus 119 ~edId~L~~~~L~~~~ 134 (153)
.+|++++++ +|+.+.
T Consensus 346 ~~~~~~l~~-~L~~il 360 (361)
T PRK00950 346 FEENERFLE-ILKEIV 360 (361)
T ss_pred HHHHHHHHH-HHHHHh
Confidence 899999998 777653
No 134
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=90.99 E-value=0.55 Score=41.66 Aligned_cols=87 Identities=8% Similarity=0.060 Sum_probs=52.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHhC--CCcccC--CCCCCeEEEEcCCc--------hHHHhcc-----ccc-cCCCCCCCC
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRL--GLIVYG--HRDSPVVPVLVFFF--------SKVGQTS-----IGL-GVEQTALND 106 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~--G~~~~~--~s~SPIiPV~~g~~--------~~~~~~a-----~~i-~~PtVP~g~ 106 (153)
+.+++.++++++..+|++.|++. .+.+.+ .+..-++.|-+.++ ..+..+. ..+ ..+ .+.
T Consensus 321 ~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrg~Gl~~gie~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~---~~~ 397 (443)
T PRK08360 321 EEKNLLKRAEKLGNYTKKRLEEMKKKHELIGDVRGIGLMIGVDLVKDRETKERAYEEAAKVVWRAWELGLIVTF---FSG 397 (443)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEEecCCcccCccHHHHHHHHHHHHHCCeEEee---cCC
Confidence 34568999999999999999864 222211 11122333333221 1222222 222 222 135
Q ss_pred ceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049 107 GLSLYESSHLRSANLWNRPHSPSLMAVFR 135 (153)
Q Consensus 107 ~RlRI~lsA~HT~edId~L~~~~L~~~~~ 135 (153)
.++|++.+..||++|||++++ +++...+
T Consensus 398 ~~lr~~P~l~~t~~~id~~~~-~l~~~l~ 425 (443)
T PRK08360 398 NVLRIQPPLTIEKEVLDEGLD-ILEEAIE 425 (443)
T ss_pred CEEEEeCCCCCCHHHHHHHHH-HHHHHHH
Confidence 889999999999999999998 7765443
No 135
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=90.98 E-value=2.1 Score=36.17 Aligned_cols=80 Identities=10% Similarity=-0.082 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEE-cCCch-HHHhcc----ccccCCC--CCCCCceEEEEeeCCCC
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVL-VFFFS-KVGQTS----IGLGVEQ--TALNDGLSLYESSHLRS 118 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~-~g~~~-~~~~~a----~~i~~Pt--VP~g~~RlRI~lsA~HT 118 (153)
.+.++.++++..++.+.|++.|+.+. .+++..+-++ +..+. ...... +.+.+.. .+.+...+||++++ +
T Consensus 275 ~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~f~~~~~~~iRi~~~~--~ 351 (364)
T PRK07865 275 REQRERYARRRAVLRPALEAAGFRVD-HSEAGLYLWATRGEDCWDTVAWLAERGILVAPGDFYGPAGAQHVRVALTA--T 351 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccc-CCCccEEEEEeCCCCHHHHHHHHHHCCEEEeCccccCcCCCCEEEEEecC--C
Confidence 45678888999999999999887653 3445543222 22221 212211 2222211 24456789999986 5
Q ss_pred HHHHHHHHHHHH
Q psy5049 119 ANLWNRPHSPSL 130 (153)
Q Consensus 119 ~edId~L~~~~L 130 (153)
++++++.++ .|
T Consensus 352 ~~~~~~~~~-~l 362 (364)
T PRK07865 352 DERIAAAVE-RL 362 (364)
T ss_pred HHHHHHHHH-Hh
Confidence 899999776 44
No 136
>PRK09105 putative aminotransferase; Provisional
Probab=90.93 E-value=3.2 Score=35.54 Aligned_cols=83 Identities=14% Similarity=-0.027 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcC-CchHHHhcc----ccccCCCCCCCCceEEEEeeCCCCHHH
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVF-FFSKVGQTS----IGLGVEQTALNDGLSLYESSHLRSANL 121 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g-~~~~~~~~a----~~i~~PtVP~g~~RlRI~lsA~HT~ed 121 (153)
.+.+++++++..++.+.|++.|+.+. .+++..+-+-++ +.....+.. +.++.. .+....-+||++. ++++
T Consensus 282 ~~~~~~~~~~r~~l~~~L~~~g~~~~-~~~~~f~~~~~~~~~~~l~~~L~~~gI~v~~~-~~~~~~~~Ris~~---~~~~ 356 (370)
T PRK09105 282 PQRRAENAAVREDTIAWLKKKGYKCT-PSQANCFMVDVKRPAKAVADAMAKQGVFIGRS-WPIWPNWVRVTVG---SEEE 356 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCcC-CCCCcEEEEeCCCCHHHHHHHHHHCCcEEecC-CCCCCCeEEEEcC---CHHH
Confidence 45567888899999999999898764 344554433333 222222221 223211 1223578999977 6899
Q ss_pred HHHHHHHHHHHHHh
Q psy5049 122 WNRPHSPSLMAVFR 135 (153)
Q Consensus 122 Id~L~~~~L~~~~~ 135 (153)
++++++ +++.+.+
T Consensus 357 ~~~l~~-al~~~~~ 369 (370)
T PRK09105 357 MAAFRS-AFAKVMR 369 (370)
T ss_pred HHHHHH-HHHHHhh
Confidence 999998 8877653
No 137
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=90.92 E-value=2.3 Score=35.65 Aligned_cols=82 Identities=13% Similarity=-0.008 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcCCchHHHhcc----ccccCCCC--CCCCceEEEEeeCCCCH
Q psy5049 47 IRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVFFFSKVGQTS----IGLGVEQT--ALNDGLSLYESSHLRSA 119 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g~~~~~~~~a----~~i~~PtV--P~g~~RlRI~lsA~HT~ 119 (153)
.+.+++++++..++.+.|++. |+.+. .+.+..+-+-+.+.....+.+ +.+++-.. +.+..-+||+++ +.
T Consensus 267 ~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~~---~~ 342 (356)
T PRK04870 267 DAQAAQLRAERTRLAAALAALPGVTVF-PSAANFILVRVPDAAAVFDGLKTRGVLVKNLSGMHPLLANCLRVTVG---TP 342 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcEEC-CCCCeEEEEECCCHHHHHHHHHHCCEEEEECCCCCCCCCCeEEEeCC---CH
Confidence 456778888888999999887 66543 345666555555434333332 22221111 234568999988 78
Q ss_pred HHHHHHHHHHHHHH
Q psy5049 120 NLWNRPHSPSLMAV 133 (153)
Q Consensus 120 edId~L~~~~L~~~ 133 (153)
++++++++ +|+.+
T Consensus 343 ~~~~~l~~-al~~~ 355 (356)
T PRK04870 343 EENAQFLA-ALKAA 355 (356)
T ss_pred HHHHHHHH-HHHHh
Confidence 99999988 77653
No 138
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=90.87 E-value=1.2 Score=39.53 Aligned_cols=85 Identities=8% Similarity=-0.121 Sum_probs=58.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHhC-CCcccC--CCCCCeEEEEcCCchHHHhcc------ccccCCCCCCCCceEEEEeeC
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRL-GLIVYG--HRDSPVVPVLVFFFSKVGQTS------IGLGVEQTALNDGLSLYESSH 115 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~-G~~~~~--~s~SPIiPV~~g~~~~~~~~a------~~i~~PtVP~g~~RlRI~lsA 115 (153)
+.++++++++++..+|++.|++. .+...+ .+...+++|.+.++..+..+. -.+..|. | .-+|++..-
T Consensus 328 ~~~~~~~~~~~~g~~l~~~l~~l~~~~~i~~vRg~Gl~~~ve~~~~~~~~~~~~~l~~~Gl~~~~~---g-~~i~~~Ppl 403 (428)
T PRK07986 328 ESGDWQQQVAAIEAQLREELAPLRDAPMVADVRVLGAIGVVETTRPVNMAALQRFFVEQGVWIRPF---G-KLIYLMPPY 403 (428)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHhcCCCEEeEeccceEEEEEeCCcccHHHHHHHHHHCCcEEEec---C-CEEEEeCCC
Confidence 44578999999999999999875 222111 134789999887654333332 2223332 4 479999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q psy5049 116 LRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 116 ~HT~edId~L~~~~L~~~~ 134 (153)
.+|+|||+++++ .+++..
T Consensus 404 ~it~~ei~~~~~-~l~~~l 421 (428)
T PRK07986 404 IILPEQLQRLTA-AVNRAV 421 (428)
T ss_pred CCCHHHHHHHHH-HHHHHH
Confidence 999999999998 776544
No 139
>PRK07681 aspartate aminotransferase; Provisional
Probab=90.83 E-value=2.2 Score=36.64 Aligned_cols=82 Identities=6% Similarity=-0.023 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCc---hHHH-hcc----ccccCCC---CCCCCceEEEEeeC
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFF---SKVG-QTS----IGLGVEQ---TALNDGLSLYESSH 115 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~---~~~~-~~a----~~i~~Pt---VP~g~~RlRI~lsA 115 (153)
.+.++.++++..++.+.|++.|+.+.....+..+-+-+.+. .+.. .+. +.+ -|. .+.+...+||++.
T Consensus 292 ~~~~~~~~~~~~~l~~~L~~~g~~~~~p~~g~f~~~~l~~~~~~~~~~~~l~~~~gv~v-~pg~~f~~~~~~~iRis~~- 369 (399)
T PRK07681 292 EKNRGIYQERRDTLVDGFRTFGWNVDKPAGSMFVWAEIPKGWTSLSFAYALMDRANVVV-TPGHAFGPHGEGFVRIALV- 369 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcccCCCeeeEEEEECCCCCCHHHHHHHHHHhCCEEE-eCChhhCcCCCCeEEEEec-
Confidence 55677888999999999999887653233355555545432 1111 111 222 121 1234568999998
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy5049 116 LRSANLWNRPHSPSLMA 132 (153)
Q Consensus 116 ~HT~edId~L~~~~L~~ 132 (153)
+++++++..++ .|..
T Consensus 370 -~~~~~~~~~l~-~l~~ 384 (399)
T PRK07681 370 -QDEEVLQQAVE-NIRN 384 (399)
T ss_pred -CCHHHHHHHHH-HHHH
Confidence 57899999766 5543
No 140
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=90.45 E-value=3.8 Score=34.24 Aligned_cols=80 Identities=10% Similarity=0.132 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc----ccc----cCCCCCCCCceEEEEeeCCCCH
Q psy5049 48 RRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS----IGL----GVEQTALNDGLSLYESSHLRSA 119 (153)
Q Consensus 48 ~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a----~~i----~~PtVP~g~~RlRI~lsA~HT~ 119 (153)
+.++.++++-.++.+.|++.|+.+...+.+.-+-+-+.+.....+.. +.+ .|+ +.|..-+||++. ++
T Consensus 243 ~~~~~~~~~r~~l~~~L~~~g~~~~~~~~g~f~~~~~~~~~~~~~~l~~~gi~v~~~~~f~--~~~~~~iRis~~---~~ 317 (332)
T PRK06425 243 HSLDIMENERSYLINNLEAMGFRAAGDPSANFITFMIPDAHDFYSYLLKNGILVRLLDDYE--CLGEQYIRIAIR---RR 317 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEECCCCCceEEEEEcCCHHHHHHHHHHCCeEEEECCCCC--CCCCCEEEEEeC---CH
Confidence 45777888889999999998876532344444444444333333222 222 232 224568999987 57
Q ss_pred HHHHHHHHHHHHHH
Q psy5049 120 NLWNRPHSPSLMAV 133 (153)
Q Consensus 120 edId~L~~~~L~~~ 133 (153)
++.+++++ +|+.+
T Consensus 318 ~~~~~l~~-al~~~ 330 (332)
T PRK06425 318 SFNIKLVN-ALRNF 330 (332)
T ss_pred HHHHHHHH-HHHHH
Confidence 89999998 77654
No 141
>PRK12566 glycine dehydrogenase; Provisional
Probab=90.44 E-value=0.74 Score=45.16 Aligned_cols=30 Identities=13% Similarity=0.158 Sum_probs=25.6
Q ss_pred CceEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Q psy5049 106 DGLSLYESSHLRSANLWNRPHSPSLMAVFRG 136 (153)
Q Consensus 106 ~~RlRI~lsA~HT~edId~L~~~~L~~~~~~ 136 (153)
...+||+.|-.+|++|||++++ ++..+.++
T Consensus 847 ~~~LmIepTE~eskeEIDrf~e-AL~~I~~e 876 (954)
T PRK12566 847 PGTLMVEPTESESKAELDRFVE-AMLSIRAE 876 (954)
T ss_pred CCEEEEEeeeeCCHHHHHHHHH-HHHHHHHH
Confidence 5779999999999999999999 77655543
No 142
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=90.42 E-value=1.7 Score=36.80 Aligned_cols=86 Identities=13% Similarity=-0.029 Sum_probs=52.4
Q ss_pred chHHHHHHHHHHHHHHHHHHhCC--Cccc--CCCCCCeEEEEcCCc-hHHHhcc---ccccCCCCCCCCceEEEEeeCCC
Q psy5049 46 GIRRISVLAHNTRYFRRKLNRLG--LIVY--GHRDSPVVPVLVFFF-SKVGQTS---IGLGVEQTALNDGLSLYESSHLR 117 (153)
Q Consensus 46 ~~~rr~~L~~ni~~fr~~L~~~G--~~~~--~~s~SPIiPV~~g~~-~~~~~~a---~~i~~PtVP~g~~RlRI~lsA~H 117 (153)
..+.+++++++..++++.|.+.. +... ..+...++.+-+..+ ......+ ..+..|. +...+|++.+..|
T Consensus 300 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~~---~~~~lRi~~~~~~ 376 (396)
T PRK02627 300 EEGLLENAAEVGEYLRAKLRELLEKYPGIKEVRGLGLMIGIELDRPAAEIVKKALEKGLLINVT---GDNVLRLLPPLII 376 (396)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHhCCCeeeeccCcEEEEEEecCcHHHHHHHHHHCCeEEeec---CCCEEEEECCccc
Confidence 45678899999999999887653 1110 112234555544222 1221111 2223332 3467999999999
Q ss_pred CHHHHHHHHHHHHHHHHh
Q psy5049 118 SANLWNRPHSPSLMAVFR 135 (153)
Q Consensus 118 T~edId~L~~~~L~~~~~ 135 (153)
|++|++++++ .++.+.+
T Consensus 377 ~~~~i~~~~~-~l~~~l~ 393 (396)
T PRK02627 377 SKEEIDEAVD-RLEEVLK 393 (396)
T ss_pred CHHHHHHHHH-HHHHHHH
Confidence 9999999998 7765543
No 143
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=90.02 E-value=2 Score=35.89 Aligned_cols=77 Identities=14% Similarity=-0.011 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhCC-CcccCCCCCCeEEEEcCCchHHHhcc--------ccccCCCCCCCCceEEEEeeCCC
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLG-LIVYGHRDSPVVPVLVFFFSKVGQTS--------IGLGVEQTALNDGLSLYESSHLR 117 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G-~~~~~~s~SPIiPV~~g~~~~~~~~a--------~~i~~PtVP~g~~RlRI~lsA~H 117 (153)
.+.+++++++..++++.|++.| +.+. .+.+..+-+-+.+..+..+.. +...||.+ +..-+||+++..+
T Consensus 244 ~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~f~~~~~~~~~~l~~~l~~~gi~v~pg~~f~~~--~~~~iRi~~~~~~ 320 (330)
T TIGR01140 244 AATRARLAAERARLAALLARLGGLEVV-GGTALFLLVRTPDAAALHEALARRGILIRDFDNFPGL--DPRYLRFALPTDE 320 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCceEC-CCCCeEEEEEcCCHHHHHHHHHHCCEEEEECCCCCCC--CCCEEEEEecCHH
Confidence 4668999999999999999988 3332 233443333333333333322 33345543 3568999998765
Q ss_pred CHHHHHHHHHHHH
Q psy5049 118 SANLWNRPHSPSL 130 (153)
Q Consensus 118 T~edId~L~~~~L 130 (153)
++ +++++ +|
T Consensus 321 --~~-~~~~~-~l 329 (330)
T TIGR01140 321 --EN-DRLEE-AL 329 (330)
T ss_pred --HH-HHHHH-hh
Confidence 44 77766 44
No 144
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=90.02 E-value=1.3 Score=37.40 Aligned_cols=77 Identities=17% Similarity=0.096 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCccc-C----CCCCCeEEEEcCCc--hHHHhcc----ccccCCCCCCC----------
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVY-G----HRDSPVVPVLVFFF--SKVGQTS----IGLGVEQTALN---------- 105 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~-~----~s~SPIiPV~~g~~--~~~~~~a----~~i~~PtVP~g---------- 105 (153)
+..+++..++..++++.|.+.+.... + ....+|+.+.+.+. ....+.. +.++. . ...
T Consensus 274 ~~i~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~L~~~~I~~~~-G-~~~~~~~~~~~~~ 351 (371)
T PF00266_consen 274 ERIRERIRELAEYLREALEELPGIEVLGPDDEPRRPSIVSFNLPGSDADDVVKYLEERGIAVST-G-SACAGPSLDILGM 351 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTEEESSSSCGGBGTTEEEEEETTSSHHHHHHHHHHHTEEEEE-S-TTTCHHHHHHHHT
T ss_pred ccchhhhhhHHHHHHhhhhcCCceeEeeecccccccceEEEeecCCCHHHHHHHHhhcCEEEec-c-CcccHHHHHHhCC
Confidence 55678899999999999998876332 2 12267888877442 2333322 22222 1 111
Q ss_pred CceEEEEeeCCCCHHHHHHH
Q psy5049 106 DGLSLYESSHLRSANLWNRP 125 (153)
Q Consensus 106 ~~RlRI~lsA~HT~edId~L 125 (153)
..-+||+++..+|+||||+|
T Consensus 352 ~~~iRvS~~~~nt~~dv~~l 371 (371)
T PF00266_consen 352 GGVIRVSLHYYNTEEDVDRL 371 (371)
T ss_dssp TTEEEEE-GTTSSHHHHHHH
T ss_pred CCEEEEeccCCCCHHHHhhC
Confidence 28999999999999999985
No 145
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=89.95 E-value=1.3 Score=39.82 Aligned_cols=84 Identities=11% Similarity=-0.071 Sum_probs=49.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHhCCC----cccCCCCCCeEEEEcCCc-------------hHHHhcc-----ccc-cCCC
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRLGL----IVYGHRDSPVVPVLVFFF-------------SKVGQTS-----IGL-GVEQ 101 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~G~----~~~~~s~SPIiPV~~g~~-------------~~~~~~a-----~~i-~~Pt 101 (153)
+.++..++++++..+|++.|.+.+. ++....-.+++-|.+.++ ..+..+. ..+ ..|.
T Consensus 365 ~~~~~~~~~~~~g~~l~~~L~~l~~~~g~~~~~~~v~g~~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l~~~Gv~~~~~ 444 (474)
T PLN02482 365 QQPGTYEYLDKITKKLIQGILEAGKKAGHEMCGGYISGMFGFFFTEGPVYNFADAKKSDTAKFARFHRGMLEEGVYLAPS 444 (474)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcccceEEEEEEecCCccChhhhccCCHHHHHHHHHHHHHCCeEEecc
Confidence 4567999999999999999986543 221112244555544321 1222222 122 2222
Q ss_pred CCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049 102 TALNDGLSLYESSHLRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 102 VP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~ 134 (153)
-+. . + .++..||++|||++++ +++...
T Consensus 445 ~~~-~---~-~psl~ht~~dId~~l~-al~~~l 471 (474)
T PLN02482 445 QFE-A---G-FTSLAHTEEDIDFTIA-AAERVL 471 (474)
T ss_pred CCC-C---C-cCCCCCCHHHHHHHHH-HHHHHH
Confidence 111 0 1 3889999999999998 776554
No 146
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=89.86 E-value=2.5 Score=41.57 Aligned_cols=81 Identities=6% Similarity=-0.094 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcC--CchHHHhcc--ccccCCCCCCCCceEEEEeeCCCCHHHHH
Q psy5049 48 RRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVF--FFSKVGQTS--IGLGVEQTALNDGLSLYESSHLRSANLWN 123 (153)
Q Consensus 48 ~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g--~~~~~~~~a--~~i~~PtVP~g~~RlRI~lsA~HT~edId 123 (153)
+.-++.+.++.|+.+.|.+.|+.+....-.-.+-|-++ +.++..+.+ ..|..-. .+...++||++-.+|++||+
T Consensus 342 ~iA~~~~~~a~~l~~~L~~~G~~~~~~~fF~~~~v~~~~~~~~~i~~~~~~~gi~l~~--~~~~~i~~s~~E~~t~~di~ 419 (939)
T TIGR00461 342 NIARRIHSLTSILANGLENDPHELINKTWFDTLTVKVGNGISSELLKAAEEFNINLRA--VDTTTVGIALDETTTKADVE 419 (939)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccCCCccceEEEEeCCCCHHHHHHHHHHCCCeeee--cCCCEEEEEeecCCCHHHHH
Confidence 44566788999999999999998743222334555544 333333333 2222111 22458999999999999999
Q ss_pred HHHHHHHH
Q psy5049 124 RPHSPSLM 131 (153)
Q Consensus 124 ~L~~~~L~ 131 (153)
.+++ ++.
T Consensus 420 ~l~~-~~~ 426 (939)
T TIGR00461 420 NLLK-VFD 426 (939)
T ss_pred HHHH-Hhc
Confidence 9998 774
No 147
>PRK07777 aminotransferase; Validated
Probab=89.63 E-value=4.4 Score=34.47 Aligned_cols=83 Identities=8% Similarity=-0.092 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEc---C--CchHHH-hcc--------ccccC-CCCCCCCceEEE
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLV---F--FFSKVG-QTS--------IGLGV-EQTALNDGLSLY 111 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~---g--~~~~~~-~~a--------~~i~~-PtVP~g~~RlRI 111 (153)
.+.++.+.++..++.+.|.+.|+.+.....+..+.+-+ + +..... .+. ++..| +..+.+...+||
T Consensus 285 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri 364 (387)
T PRK07777 285 AALRDSLQAKRDRLAAGLAEAGFEVHDSAGTYFLCADPRPLGYDDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRF 364 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCccCCCcceEEEecccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEE
Confidence 45678899999999999999887764322232332222 1 212211 111 22222 223445678999
Q ss_pred EeeCCCCHHHHHHHHHHHHHH
Q psy5049 112 ESSHLRSANLWNRPHSPSLMA 132 (153)
Q Consensus 112 ~lsA~HT~edId~L~~~~L~~ 132 (153)
++++ ++++++..++ .|..
T Consensus 365 ~~~~--~~~~l~~~l~-~l~~ 382 (387)
T PRK07777 365 AFCK--RDDTLDEAIR-RLRA 382 (387)
T ss_pred EecC--CHHHHHHHHH-HHHH
Confidence 9975 6899988766 5544
No 148
>PRK07682 hypothetical protein; Validated
Probab=89.00 E-value=4.5 Score=34.22 Aligned_cols=83 Identities=12% Similarity=0.137 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCC--eEEEEcC---CchHHH-hcc----ccccCCC---CCCCCceEEEEe
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSP--VVPVLVF---FFSKVG-QTS----IGLGVEQ---TALNDGLSLYES 113 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SP--IiPV~~g---~~~~~~-~~a----~~i~~Pt---VP~g~~RlRI~l 113 (153)
.+.+++++++..++.+.|++.|+.+.. +++. +.+-+.. +..... .+. ..+. |. -+.+...+||++
T Consensus 279 ~~~~~~~~~~~~~~~~~L~~~~~~~~~-p~g~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~-pg~~f~~~~~~~iRis~ 356 (378)
T PRK07682 279 IRMRDSYRKRRNFFVTSFNEIGLTCHV-PGGAFYAFPSISSTGLSSEEFAEQLLLEEKVAVV-PGSVFGESGEGFIRCSY 356 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCccCC-CCeeEEEEEeccCCCCCHHHHHHHHHHhCCEEEc-CchhhCcCCCCeEEEEe
Confidence 456788899999999999998876532 3222 2221111 222222 111 2222 21 134568999999
Q ss_pred eCCCCHHHHHHHHHHHHHHHH
Q psy5049 114 SHLRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 114 sA~HT~edId~L~~~~L~~~~ 134 (153)
+. +++++++.++ .+..+.
T Consensus 357 ~~--~~~~l~~~l~-~l~~~l 374 (378)
T PRK07682 357 AT--SLEQLQEAMK-RMKRFV 374 (378)
T ss_pred CC--CHHHHHHHHH-HHHHHH
Confidence 85 6899999877 666544
No 149
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=88.98 E-value=5.1 Score=34.05 Aligned_cols=84 Identities=11% Similarity=-0.009 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcCCchHHHhcc----ccccCCCC-CCCCceEEEEeeCCCCHHH
Q psy5049 48 RRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVFFFSKVGQTS----IGLGVEQT-ALNDGLSLYESSHLRSANL 121 (153)
Q Consensus 48 ~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g~~~~~~~~a----~~i~~PtV-P~g~~RlRI~lsA~HT~ed 121 (153)
+.++++.++-.++.+.|++. |+.....+.+.-+-+-+.+.+...+.+ +.+++... +....-+||++. ++++
T Consensus 273 ~~~~~~~~~r~~l~~~L~~~~~~~~~~p~~g~f~~~~~~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~Ris~~---~~~~ 349 (364)
T PRK04781 273 RRVAEVRAERERLHAALAQLPGVRRVYPSQGNFLLVRFDDAEAAFQALLAAGVVVRDQRAAPRLSDALRITLG---TPEQ 349 (364)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcEEEEEcCCHHHHHHHHHHCCeEEeeCCCCCCCCCeEEEeCC---CHHH
Confidence 44556778888899999887 553112355555555455444333332 33333321 333457999997 5899
Q ss_pred HHHHHHHHHHHHHh
Q psy5049 122 WNRPHSPSLMAVFR 135 (153)
Q Consensus 122 Id~L~~~~L~~~~~ 135 (153)
.+++++ +++.+..
T Consensus 350 ~~~l~~-al~~~~~ 362 (364)
T PRK04781 350 NDRVLA-ALQRTQA 362 (364)
T ss_pred HHHHHH-HHHHHHh
Confidence 999998 8876643
No 150
>PRK08912 hypothetical protein; Provisional
Probab=88.59 E-value=5 Score=34.12 Aligned_cols=83 Identities=11% Similarity=-0.021 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCC------chHHHh-cc--------ccccCCCCCCCCceEEE
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFF------FSKVGQ-TS--------IGLGVEQTALNDGLSLY 111 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~------~~~~~~-~a--------~~i~~PtVP~g~~RlRI 111 (153)
.+.++++.++..++.+.|+..|+.+.....+..+.+-+.. ...... +. .+..|-.-..+...+|+
T Consensus 285 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~g~~~l~~~l~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl 364 (387)
T PRK08912 285 EGMRADLARSRDRLAAGLRRIGFPVLPSQGTYFLTVDLAPLGLAEDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRF 364 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEecccccCCCCCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEE
Confidence 5668889999999999999988876433335555555532 212221 11 22222111234678999
Q ss_pred EeeCCCCHHHHHHHHHHHHHH
Q psy5049 112 ESSHLRSANLWNRPHSPSLMA 132 (153)
Q Consensus 112 ~lsA~HT~edId~L~~~~L~~ 132 (153)
+++. .+++++..++ .|..
T Consensus 365 ~~~~--~~~~l~~~l~-rl~~ 382 (387)
T PRK08912 365 CFAK--RDATLDEAVE-RLAA 382 (387)
T ss_pred EEeC--CHHHHHHHHH-HHHH
Confidence 9996 4788888666 4443
No 151
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=87.74 E-value=4.8 Score=34.08 Aligned_cols=77 Identities=12% Similarity=0.064 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCc---hHHHh-cc--------ccccCCCCCCCCceEEEEee
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFF---SKVGQ-TS--------IGLGVEQTALNDGLSLYESS 114 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~---~~~~~-~a--------~~i~~PtVP~g~~RlRI~ls 114 (153)
.+.++.++++..++.+.|++.|+.+.....+..+-+-+.+. .+... +. .+..|+. .+..-+||+++
T Consensus 290 ~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~~~gi~v~~g~~f~~--~~~~~~Ris~~ 367 (383)
T TIGR03540 290 KEIRKIYQRRRDLLLEALKKIGIDVEKPKATFYVWVPVPEGYTSAEFAARLLEETGVVVTPGVGFGE--YGEGYIRISLT 367 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEecCCCcceEEEEECCCCCCHHHHHHHHHHHCCEEEecchhhCc--cCCCeEEEEec
Confidence 45688899999999999999887654333344444554432 22221 11 2223432 23567999996
Q ss_pred CCCCHHHHHHHHH
Q psy5049 115 HLRSANLWNRPHS 127 (153)
Q Consensus 115 A~HT~edId~L~~ 127 (153)
.++++++..++
T Consensus 368 --~~~~~l~~~l~ 378 (383)
T TIGR03540 368 --VPDERLEEAVA 378 (383)
T ss_pred --CCHHHHHHHHH
Confidence 46777777544
No 152
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=87.72 E-value=1.5 Score=38.92 Aligned_cols=85 Identities=12% Similarity=-0.030 Sum_probs=49.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHhC-CCcccC--CCCCCeEEEEc-----CCchHHHhcc-----ccc-cCCCCCCCCceEE
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRL-GLIVYG--HRDSPVVPVLV-----FFFSKVGQTS-----IGL-GVEQTALNDGLSL 110 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~-G~~~~~--~s~SPIiPV~~-----g~~~~~~~~a-----~~i-~~PtVP~g~~RlR 110 (153)
+.+.+.++++++.++|++.|+++ ++...+ .+..-...|-+ ++...+..+. ..+ ..+ +...+|
T Consensus 343 ~~~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrg~Gl~~~v~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~----~~~~lr 418 (445)
T PRK09221 343 REEDLFERAAELAPYFEDAVHSLKGLPHVIDIRNIGLVAGIELAPRPGAPGARGYEAFMKCFEKGLLVRY----TGDTIA 418 (445)
T ss_pred HhccHHHHHHHHHHHHHHHHHhhccCCCEEEEecCceEEEEEEecccccccchHHHHHHHHHHCCeEEee----cCCEEE
Confidence 34568899999999999999875 221100 01011112211 1111222221 122 222 236899
Q ss_pred EEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049 111 YESSHLRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 111 I~lsA~HT~edId~L~~~~L~~~~ 134 (153)
|+....+|++|||++++ ++++..
T Consensus 419 ~~Ppl~~t~~eid~~~~-~l~~~l 441 (445)
T PRK09221 419 LSPPLIIEKAQIDELVD-ALGDAL 441 (445)
T ss_pred EECCccCCHHHHHHHHH-HHHHHH
Confidence 99999999999999998 776554
No 153
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=87.70 E-value=3.6 Score=34.55 Aligned_cols=80 Identities=11% Similarity=-0.008 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCc---hHHHhcc--------ccccCCCCCCCCceEEEEeeC
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFF---SKVGQTS--------IGLGVEQTALNDGLSLYESSH 115 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~---~~~~~~a--------~~i~~PtVP~g~~RlRI~lsA 115 (153)
.++|++++++...+.+.|...|+.+.....+..+-+-+.+. ....+.. .+..|.. .+..-+||++.
T Consensus 258 ~~~r~~l~~~~~~~~~~l~~~g~~~~~~~g~~~~~~~~~~~~~~~~l~~~L~~~gv~v~~g~~f~~--~~~~~~Ri~~~- 334 (350)
T TIGR03537 258 LERRKIFKRKRDLFIEFFNKVGLEYLYPDATFYLWVKVPSGIDAKDYALRLLENGIVVAPGENFGS--GEEGYVRVALV- 334 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcccCCCeEEEEEEECCCCCCHHHHHHHHHHCCEEEcCchhhCC--CCCCEEEEEec-
Confidence 56788999999999999999887653222233444545432 2222211 2222322 22456999985
Q ss_pred CCCHHHHHHHHHHHHH
Q psy5049 116 LRSANLWNRPHSPSLM 131 (153)
Q Consensus 116 ~HT~edId~L~~~~L~ 131 (153)
.++++++..++ .++
T Consensus 335 -~~~~~~~~~l~-~~~ 348 (350)
T TIGR03537 335 -PTLEECEEALR-LWE 348 (350)
T ss_pred -CCHHHHHHHHH-HHh
Confidence 57899988766 444
No 154
>PRK08175 aminotransferase; Validated
Probab=87.67 E-value=7.2 Score=33.37 Aligned_cols=83 Identities=12% Similarity=0.055 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCc------hHHHh-cc--------ccccCCCCCCCCceEEE
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFF------SKVGQ-TS--------IGLGVEQTALNDGLSLY 111 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~------~~~~~-~a--------~~i~~PtVP~g~~RlRI 111 (153)
.+.++.++++..++.+.|++.|+.+...+.+..+-+-+.+. .+... +. ....|+ +.+...+||
T Consensus 290 ~~~~~~~~~~~~~~~~~L~~~~~~~~~p~~g~~i~i~l~~~~~~~~~~~~~~~l~~~~gv~v~p~~~f~--~~~~~~lRi 367 (395)
T PRK08175 290 RDIAEQYKRRRDVLVKGLHEAGWMVEMPKASMYVWAKIPEPYAAMGSLEFAKKLLNEAKVCVSPGIGFG--DYGDTHVRF 367 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEEEEECCcccCCCCHHHHHHHHHHhCCEEEeCchhhC--cCCCCeEEE
Confidence 45678888999999999999887653333466666665542 22221 11 222332 334568999
Q ss_pred EeeCCCCHHHHHHHHHHHHHHHH
Q psy5049 112 ESSHLRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 112 ~lsA~HT~edId~L~~~~L~~~~ 134 (153)
++. ++++.+...++ .+..+.
T Consensus 368 s~~--~~~~~~~~al~-~l~~~l 387 (395)
T PRK08175 368 ALI--ENRDRIRQAIR-GIKAMF 387 (395)
T ss_pred EeC--CCHHHHHHHHH-HHHHHH
Confidence 985 57888888777 554444
No 155
>PRK06290 aspartate aminotransferase; Provisional
Probab=87.22 E-value=4.2 Score=35.42 Aligned_cols=85 Identities=8% Similarity=-0.064 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCC----------chHHHhcc----ccccCCCCCCCCceEEEE
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFF----------FSKVGQTS----IGLGVEQTALNDGLSLYE 112 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~----------~~~~~~~a----~~i~~PtVP~g~~RlRI~ 112 (153)
++.+++++++..++.+.|++.|+.+.....+-.+-+-+.+ .....+.. ..+..|.-..+ ..+||+
T Consensus 303 ~~~~~~~~~~~~~l~~~L~~~g~~~~~p~g~f~l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~~v~~~p~~~~~-~~lRi~ 381 (410)
T PRK06290 303 EKIREKYSRRLDKLVKILNEVGFKAEMPGGTFYLYVKAPKGTKSGIKFENAEEFSQYLIKEKLISTVPWDDAG-HFLRFS 381 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCeecCCCeeeEEEEECCCccccCCCCCCHHHHHHHHHHhCCEEEECCcccc-CeEEEE
Confidence 5578889999999999999988765322223333333432 12222222 23333432222 589999
Q ss_pred ee-CCCCHHHHHHHHHHHHHHH
Q psy5049 113 SS-HLRSANLWNRPHSPSLMAV 133 (153)
Q Consensus 113 ls-A~HT~edId~L~~~~L~~~ 133 (153)
+. -..++|+.+++++ +|+..
T Consensus 382 ~~~~~~~~~~~~~~~~-~l~~~ 402 (410)
T PRK06290 382 VTFEAKDEEEEDRILE-EIKRR 402 (410)
T ss_pred EEcccccccchhHHHH-HHHHH
Confidence 97 5678888999888 66543
No 156
>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=87.15 E-value=3.2 Score=36.58 Aligned_cols=85 Identities=9% Similarity=-0.088 Sum_probs=56.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHhCC-CcccC--CCCCCeEEEEcCCchHHHhcc-----cc-ccCCCCCCCCceEEEEeeC
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRLG-LIVYG--HRDSPVVPVLVFFFSKVGQTS-----IG-LGVEQTALNDGLSLYESSH 115 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~G-~~~~~--~s~SPIiPV~~g~~~~~~~~a-----~~-i~~PtVP~g~~RlRI~lsA 115 (153)
..+..+++++++..+|++.|+.+. +...+ .+...+++|.+.++..+..+. .. +..|. | ..+||...-
T Consensus 325 ~~~~~~~~~~~~g~~l~~~L~~l~~~~~v~~vRg~Gl~~~ie~~~~~~~~~~~~~~~~~Gl~~~~~---g-~~l~~~PpL 400 (422)
T PRK05630 325 ETGMWRKQVKRIEAELIAGLSPLAHLPGVADVRVLGAIGVVEMEQPVDMEEATQAAVDHGVWLRPF---G-RLVYVMPPY 400 (422)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHhhcCCCeeeeeccccEEEEEECCcccHHHHHHHHHHCCeEEEec---C-CEEEEECCc
Confidence 344678899999999999887532 11111 134789999987653222222 22 22332 4 578999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q psy5049 116 LRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 116 ~HT~edId~L~~~~L~~~~ 134 (153)
.+|++|||.+++ +++...
T Consensus 401 ~it~~~i~~~~~-~l~~al 418 (422)
T PRK05630 401 ITTSEQIAQICA-ALAAAV 418 (422)
T ss_pred cCCHHHHHHHHH-HHHHHH
Confidence 999999999998 776544
No 157
>PLN00175 aminotransferase family protein; Provisional
Probab=87.14 E-value=7 Score=33.97 Aligned_cols=84 Identities=8% Similarity=-0.064 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEc---C--CchHHHhcc-----ccccC-----CCCCCCCceEEE
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLV---F--FFSKVGQTS-----IGLGV-----EQTALNDGLSLY 111 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~---g--~~~~~~~~a-----~~i~~-----PtVP~g~~RlRI 111 (153)
++.++.+.++..++.+.|++.|+.+.....+..+.+-+ + +........ +.+.+ +..+.+...+||
T Consensus 312 ~~~~~~~~~~~~~l~~~L~~~g~~~~~p~g~~f~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRl 391 (413)
T PLN00175 312 EELKRDYSAKKDILVEGLKEVGFKVYPSSGTYFVMVDHTPFGFENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRF 391 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCeecCCCeeEEEEEeccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEE
Confidence 56788999999999999999887654322233333332 1 122222211 22222 222335678999
Q ss_pred EeeCCCCHHHHHHHHHHHHHHH
Q psy5049 112 ESSHLRSANLWNRPHSPSLMAV 133 (153)
Q Consensus 112 ~lsA~HT~edId~L~~~~L~~~ 133 (153)
+++. ++|+++..++ .|...
T Consensus 392 s~~~--~~e~l~~~~~-rL~~~ 410 (413)
T PLN00175 392 AFCK--DEETLRAAVE-RMKTK 410 (413)
T ss_pred EEcC--CHHHHHHHHH-HHHHH
Confidence 9984 7999999777 55543
No 158
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=87.06 E-value=4.6 Score=36.08 Aligned_cols=89 Identities=9% Similarity=0.105 Sum_probs=53.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhC--CCcccC--CCCCCeEEEEcC------CchHHHhcc-----ccc-cCCCCCCCCc
Q psy5049 44 ISGIRRISVLAHNTRYFRRKLNRL--GLIVYG--HRDSPVVPVLVF------FFSKVGQTS-----IGL-GVEQTALNDG 107 (153)
Q Consensus 44 ~~~~~rr~~L~~ni~~fr~~L~~~--G~~~~~--~s~SPIiPV~~g------~~~~~~~~a-----~~i-~~PtVP~g~~ 107 (153)
.+.+...++.+++..+|++.|+++ ++.+.+ .+..-.+.|-+- +.+.+..+. ..+ ..|. +.+..
T Consensus 337 l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~VrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~-g~~~~ 415 (457)
T PRK05639 337 IEEENLLKNALKVGEFIKKRLLEMKESFEVIGDVRGKGLMIGVEIVKENGKPDPELTGKICWRAFELGLILPSY-GMFGN 415 (457)
T ss_pred HHHccHHHHHHHHHHHHHHHHHHHHHhCCCEEeeccceeEEEEEEecCCCCCCHHHHHHHHHHHHhCCeEEeec-CCCCC
Confidence 345677888889999999999863 232211 111122233221 122222222 222 3333 44468
Q ss_pred eEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049 108 LSLYESSHLRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 108 RlRI~lsA~HT~edId~L~~~~L~~~~ 134 (153)
.+|+.....||++|||.+++ +++...
T Consensus 416 ~lr~~Ppl~it~~~id~~~~-~l~~~l 441 (457)
T PRK05639 416 VIRITPPLVITKEIAEKGLE-IMERAI 441 (457)
T ss_pred EEEEeCCCccCHHHHHHHHH-HHHHHH
Confidence 99999999999999999998 776554
No 159
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=86.88 E-value=10 Score=31.97 Aligned_cols=83 Identities=17% Similarity=0.029 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcCC-chHHHhcc----ccc----cCCCCCCCCceEEEEeeCC
Q psy5049 47 IRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVFF-FSKVGQTS----IGL----GVEQTALNDGLSLYESSHL 116 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g~-~~~~~~~a----~~i----~~PtVP~g~~RlRI~lsA~ 116 (153)
.+.++.++++..++.+.|+.. |+.+. .+.+.-+-+-+.. .....+.. +.+ .|+.. +..-+||+++
T Consensus 263 ~~~~~~~~~~r~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~f~~~--~~~~iRis~~-- 337 (356)
T PRK08056 263 QATWQWLAEEGARFYQALCALPLLTVW-PGRANYLFLRCERPDIDLQRALLTQRILIRSCANYPGL--DSRYYRVAIR-- 337 (356)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcEEc-CCCCcEEEEEcCCChHHHHHHHHHCCeEEEECCCCCCC--CCCEEEEEEc--
Confidence 355788889999999999876 55543 3445543333332 22222221 222 34332 2357999986
Q ss_pred CCHHHHHHHHHHHHHHHHhc
Q psy5049 117 RSANLWNRPHSPSLMAVFRG 136 (153)
Q Consensus 117 HT~edId~L~~~~L~~~~~~ 136 (153)
++++.+++++ +|+.+.++
T Consensus 338 -~~~~~~~l~~-~l~~~~~~ 355 (356)
T PRK08056 338 -SAAENERLLA-ALRNVLTG 355 (356)
T ss_pred -CHHHHHHHHH-HHHHHHcc
Confidence 6799999998 88877654
No 160
>PRK14012 cysteine desulfurase; Provisional
Probab=86.62 E-value=8.3 Score=33.07 Aligned_cols=30 Identities=0% Similarity=-0.078 Sum_probs=25.6
Q ss_pred CceEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Q psy5049 106 DGLSLYESSHLRSANLWNRPHSPSLMAVFRG 136 (153)
Q Consensus 106 ~~RlRI~lsA~HT~edId~L~~~~L~~~~~~ 136 (153)
...+|++++...|++|+|++++ +|+++.+.
T Consensus 350 ~~~iRls~~~~~t~~dvd~~~~-~l~~~~~~ 379 (404)
T PRK14012 350 HSSIRFSLGRFTTEEEIDYAIE-LVRKSIGK 379 (404)
T ss_pred CceEEEEecCCCCHHHHHHHHH-HHHHHHHH
Confidence 4679999999999999999999 88766543
No 161
>PRK08068 transaminase; Reviewed
Probab=86.39 E-value=6.1 Score=33.68 Aligned_cols=78 Identities=6% Similarity=-0.101 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCCCC-CeEEEEcCC---chHHHhcc----ccccCCCC---CCCCceEEEEeeC
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDS-PVVPVLVFF---FSKVGQTS----IGLGVEQT---ALNDGLSLYESSH 115 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~S-PIiPV~~g~---~~~~~~~a----~~i~~PtV---P~g~~RlRI~lsA 115 (153)
++.+++++++..++.+.|++.|+.+. .+.. -.+-+-+.+ ........ .....|.. +.+...+||+++
T Consensus 293 ~~~~~~~~~~r~~~~~~L~~~g~~~~-~~~g~~~~~v~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~- 370 (389)
T PRK08068 293 AELVARYESRRNAFISACREIGWEVD-APKGSFFAWMPVPKGYTSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGLL- 370 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCccc-CCCeeEEEEEECCCCCCHHHHHHHHHHhCCEEEecchHhCccCCCeEEEEEc-
Confidence 56788899999999999999887653 2333 333444432 22222221 11122221 335679999996
Q ss_pred CCCHHHHHHHHH
Q psy5049 116 LRSANLWNRPHS 127 (153)
Q Consensus 116 ~HT~edId~L~~ 127 (153)
+.++.+...++
T Consensus 371 -~~~~~l~~al~ 381 (389)
T PRK08068 371 -TDEERLREAVE 381 (389)
T ss_pred -CCHHHHHHHHH
Confidence 35566555443
No 162
>PRK06225 aspartate aminotransferase; Provisional
Probab=86.34 E-value=13 Score=31.53 Aligned_cols=86 Identities=8% Similarity=-0.025 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhC-CCccc-CCCCCCeEEEEcCC----chHHHhcc----ccccC---CCCCCCCceEEEEe
Q psy5049 47 IRRISVLAHNTRYFRRKLNRL-GLIVY-GHRDSPVVPVLVFF----FSKVGQTS----IGLGV---EQTALNDGLSLYES 113 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~-~~s~SPIiPV~~g~----~~~~~~~a----~~i~~---PtVP~g~~RlRI~l 113 (153)
+..++.++++..++++.|.+. |+.+. ..+.+..+.+.+.+ .....+.. ..+++ ...+.|...+|+++
T Consensus 277 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~iR~s~ 356 (380)
T PRK06225 277 DRIRRTTFKNQKLIKEAVDEIEGVFLPVYPSHGNMMVIDISEAGIDPEDLVEYLLERKIFVRQGTYTSKRFGDRYIRVSF 356 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCCccccCCCCCeEEEEEcccccCCHHHHHHHHHHCCEEEcCCcccCcCCCCceEEEEe
Confidence 344556677788888888873 53221 12345566665532 12222211 22211 11133566899998
Q ss_pred eCCCCHHHHHHHHHHHHHHHHh
Q psy5049 114 SHLRSANLWNRPHSPSLMAVFR 135 (153)
Q Consensus 114 sA~HT~edId~L~~~~L~~~~~ 135 (153)
+ +++|+++++++ .|..+.+
T Consensus 357 ~--~~~e~l~~~~~-~l~~~~~ 375 (380)
T PRK06225 357 S--IPREQVEVFCE-EFPDVVE 375 (380)
T ss_pred C--CCHHHHHHHHH-HHHHHHH
Confidence 6 47999999998 7766554
No 163
>PLN02483 serine palmitoyltransferase
Probab=86.21 E-value=0.51 Score=42.40 Aligned_cols=33 Identities=18% Similarity=0.436 Sum_probs=27.6
Q ss_pred HHHHHHHhHHHHHHHhhhcccEEeecCCCCCCC
Q psy5049 3 LISVLAQNTRYFRRKLNRLGLILYVLFQAQTKP 35 (153)
Q Consensus 3 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p 35 (153)
.++++++|++||++.|+++||.++|...++..|
T Consensus 370 ~~~~l~~~~~~l~~~L~~~G~~v~~~~~sp~~~ 402 (489)
T PLN02483 370 KLAQIRENSNFFRSELQKMGFEVLGDNDSPVMP 402 (489)
T ss_pred HHHHHHHHHHHHHHHHHHCCCcccCCCCCCEEE
Confidence 467899999999999999999998875555555
No 164
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=86.05 E-value=7.4 Score=32.81 Aligned_cols=81 Identities=16% Similarity=0.016 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEE-cCCchHHHhcc----ccccCCCCCCCCceEEEEeeCCCCHHH
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVL-VFFFSKVGQTS----IGLGVEQTALNDGLSLYESSHLRSANL 121 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~-~g~~~~~~~~a----~~i~~PtVP~g~~RlRI~lsA~HT~ed 121 (153)
.+.++++.++..++.+.|++.|+.+. .++++.+-+. +.+.....+.. ..++.-. . ...+||+++ ++++
T Consensus 278 ~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-~--~~~iRi~~~---~~~~ 350 (368)
T PRK03317 278 LASVAALRAERDRVVAWLRELGLRVA-PSDANFVLFGRFADRHAVWQGLLDRGVLIRDVG-I--PGWLRVTIG---TPEE 350 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEeC-CCCCcEEEEeccCCHHHHHHHHHHCCEEEEeCC-C--CCeEEEecC---CHHH
Confidence 34566778888899999998888653 3555644332 22222222222 2222111 1 358999975 7899
Q ss_pred HHHHHHHHHHHHHh
Q psy5049 122 WNRPHSPSLMAVFR 135 (153)
Q Consensus 122 Id~L~~~~L~~~~~ 135 (153)
++++++ +++.+.+
T Consensus 351 ~~~~~~-~l~~~~~ 363 (368)
T PRK03317 351 NDAFLA-ALAEVLA 363 (368)
T ss_pred HHHHHH-HHHHHHH
Confidence 999998 7776643
No 165
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=85.96 E-value=8 Score=32.65 Aligned_cols=80 Identities=13% Similarity=0.038 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcC--CchHHHhcc----ccccCCCCCCCCceEEEEeeCCCCHH
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVF--FFSKVGQTS----IGLGVEQTALNDGLSLYESSHLRSAN 120 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g--~~~~~~~~a----~~i~~PtVP~g~~RlRI~lsA~HT~e 120 (153)
.+.+++++++-.++.+.|++.|+.+. + ++.+ +++. +.....+.. +.++.-. ....+||+++. |++
T Consensus 248 ~~~~~~~~~~r~~l~~~L~~~g~~~~--~-~~~f-~~~~~~~~~~l~~~l~~~GI~vr~~~---~~~~lRisi~~--~~~ 318 (339)
T PRK06959 248 AAMRERLAADGARLAALLRAHGFAVH--A-TPLF-SWTDDPRAAALHAALARRGIWTRYFA---PPPSVRFGLPA--DEA 318 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCcc--C-cceE-EEEeCCCHHHHHHHHHhCCeEEEECC---CCCeEEEECCC--CHH
Confidence 56788899999999999999998763 2 3432 3332 222222222 3333211 23589999754 557
Q ss_pred HHHHHHHHHHHHHHhc
Q psy5049 121 LWNRPHSPSLMAVFRG 136 (153)
Q Consensus 121 dId~L~~~~L~~~~~~ 136 (153)
|++++++ +|+.+.+.
T Consensus 319 e~~~l~~-al~~~~~~ 333 (339)
T PRK06959 319 EWQRLED-ALAECVPT 333 (339)
T ss_pred HHHHHHH-HHHHHHHH
Confidence 9999998 88766554
No 166
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=85.47 E-value=6.8 Score=33.47 Aligned_cols=50 Identities=8% Similarity=-0.157 Sum_probs=36.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHhCC------Cccc------------CCCCCCeEEEEcC-CchHHHhcc
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRLG------LIVY------------GHRDSPVVPVLVF-FFSKVGQTS 94 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~G------~~~~------------~~s~SPIiPV~~g-~~~~~~~~a 94 (153)
..+.+++++++|+.++.+.|.+.+ +.-. ..+.++|+++.+. +.+.+.++.
T Consensus 235 tl~~r~~~~~~na~~la~~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~~~~~~~~~f~ 303 (369)
T cd00614 235 TLPLRMERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELKGGLEAAKKFL 303 (369)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeCCCHHHHHHHH
Confidence 446789999999999999999876 2110 0134789999995 666666654
No 167
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=85.46 E-value=5.7 Score=34.89 Aligned_cols=84 Identities=7% Similarity=-0.085 Sum_probs=48.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHh----CCCcccCCCCCCeEEEEcCCc-------------hHHHhcc-----c-cccCCC
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNR----LGLIVYGHRDSPVVPVLVFFF-------------SKVGQTS-----I-GLGVEQ 101 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~----~G~~~~~~s~SPIiPV~~g~~-------------~~~~~~a-----~-~i~~Pt 101 (153)
+.++..++++++..+|++.|++ .++.........++.|.+.++ ..+..+. . .+..|.
T Consensus 319 ~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~v~r~~g~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~ 398 (428)
T PRK12389 319 QQEGVYEKLDRLGAMLEEGILEAAEKHGITITINRLKGALTVYFTDEKVTNYDQAERSDGEAFGKFFKLMLNQGINLAPS 398 (428)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcEEEEEEeCCCCCChhhhcccCHHHHHHHHHHHHHCCcEeecC
Confidence 3456899999999999999985 343221112223555555322 1122222 1 222232
Q ss_pred CCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049 102 TALNDGLSLYESSHLRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 102 VP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~ 134 (153)
+... +.++..||+||||++++ ++++..
T Consensus 399 ---~~~~--~~~~l~~t~e~id~~~~-~l~~~l 425 (428)
T PRK12389 399 ---KYEA--WFLTTAHTEEDIEETLE-AVDRAF 425 (428)
T ss_pred ---CCCC--eeecCCCCHHHHHHHHH-HHHHHH
Confidence 1111 45789999999999998 776554
No 168
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=85.23 E-value=7.3 Score=33.00 Aligned_cols=79 Identities=10% Similarity=-0.079 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCc---hHH-Hhcc---ccccCCC---CCCCCceEEEEeeCC
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFF---SKV-GQTS---IGLGVEQ---TALNDGLSLYESSHL 116 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~---~~~-~~~a---~~i~~Pt---VP~g~~RlRI~lsA~ 116 (153)
.+.++.++++..++.+.|++.|+.+.....+..+-+-+.+. .+. ..+. ....-|. -+.+..-+||++.
T Consensus 292 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~-- 369 (385)
T PRK09276 292 EELRKIYQERRDILVEGLRKLGLEVEPPKATFYVWAPVPKGYTSAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIALT-- 369 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccCCCcceEEEEECCCCCCHHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEeC--
Confidence 45577888889999999999887654323344445555432 222 1111 1111121 1234568999996
Q ss_pred CCHHHHHHHHH
Q psy5049 117 RSANLWNRPHS 127 (153)
Q Consensus 117 HT~edId~L~~ 127 (153)
.+++++...++
T Consensus 370 ~~~~~l~~~l~ 380 (385)
T PRK09276 370 VPDERIEEAVE 380 (385)
T ss_pred CCHHHHHHHHH
Confidence 46777777544
No 169
>PRK03321 putative aminotransferase; Provisional
Probab=84.72 E-value=13 Score=31.07 Aligned_cols=80 Identities=9% Similarity=-0.041 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCc-hHHHhcc----ccccCCCCCCCCceEEEEeeCCCCHHH
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFF-SKVGQTS----IGLGVEQTALNDGLSLYESSHLRSANL 121 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~-~~~~~~a----~~i~~PtVP~g~~RlRI~lsA~HT~ed 121 (153)
.+.++++.++-.++.+.|.+.|+.+. .+.++.+-+-++.. ....+.. +.++ | -+...+||++ .++++
T Consensus 266 ~~~~~~~~~~r~~~~~~L~~~~~~~~-~~~g~~i~i~l~~~~~~~~~~l~~~gI~v~-~---~~~~~iRi~~---~~~~~ 337 (352)
T PRK03321 266 LERVDAVVAERDRVRAALRAAGWTVP-PSQANFVWLPLGERTADFAAAAAEAGVVVR-P---FAGEGVRVTI---GAPEE 337 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCccC-CCCCCEEEEeCCCCHHHHHHHHHHCCEEEE-c---cCCCcEEEee---CCHHH
Confidence 44455566666778899988887653 34566655555432 2222221 2222 2 2445699998 58899
Q ss_pred HHHHHHHHHHHHHh
Q psy5049 122 WNRPHSPSLMAVFR 135 (153)
Q Consensus 122 Id~L~~~~L~~~~~ 135 (153)
.+++++ +++.+.+
T Consensus 338 ~~~~~~-al~~~~~ 350 (352)
T PRK03321 338 NDAFLR-AARAWRA 350 (352)
T ss_pred HHHHHH-HHHHHhc
Confidence 999998 8877654
No 170
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=83.81 E-value=11 Score=31.69 Aligned_cols=81 Identities=16% Similarity=0.080 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcCCchHHHhcc----ccccCCCC-CCCCceEEEEeeCCCCHH
Q psy5049 47 IRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVFFFSKVGQTS----IGLGVEQT-ALNDGLSLYESSHLRSAN 120 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g~~~~~~~~a----~~i~~PtV-P~g~~RlRI~lsA~HT~e 120 (153)
.+.++.++++-.++.+.|.+. |+.+. .++++.+-+-+.+.....+.+ +.++.-.. +.+..-+||++. +.+
T Consensus 262 ~~~~~~~~~~r~~l~~~l~~~~g~~~~-~~~~~~~~i~~~~~~~~~~~l~~~gV~v~~~~~~~~~~~~iRis~~---~~~ 337 (351)
T PRK14807 262 KERVNYILNERERLIKELSKIPGIKVY-PSKTNFILVKFKDADYVYQGLLERGILVRDFSKVEGLEGALRITVS---SCE 337 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcEEC-cCCccEEEEEcCCHHHHHHHHHHCCEEEEECCCCCCCCCeEEEEcC---CHH
Confidence 455667777888888888765 66543 345665555555544444333 23322121 223567999987 478
Q ss_pred HHHHHHHHHHHH
Q psy5049 121 LWNRPHSPSLMA 132 (153)
Q Consensus 121 dId~L~~~~L~~ 132 (153)
+.+++++ +|+.
T Consensus 338 ~~~~l~~-~l~~ 348 (351)
T PRK14807 338 ANDYLIN-GLKE 348 (351)
T ss_pred HHHHHHH-HHHH
Confidence 8888888 7754
No 171
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=83.68 E-value=15 Score=31.78 Aligned_cols=84 Identities=13% Similarity=-0.012 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCc-hHHHhcc--------ccccCCCCCCCCceEEEEeeCCC
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFF-SKVGQTS--------IGLGVEQTALNDGLSLYESSHLR 117 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~-~~~~~~a--------~~i~~PtVP~g~~RlRI~lsA~H 117 (153)
.+.++.++++-.++.+.|++.|+.+...+.+--+-+-+.++ ......+ .+..| .++.+..-+||+++. .
T Consensus 336 ~~~~~~~~~~r~~~~~~L~~~~~~~~~p~gg~f~~~~l~~~~~~~~~~l~~~gV~v~pg~~f-~~~~~~~~iRis~~~-~ 413 (431)
T PRK15481 336 AQARLFYAQRRQKLARALQQYGIAIPSPGDGLNLWLPLDTDSQATALTLAKSGWLVREGEAF-GVSAPSHGLRITLST-L 413 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccCCCeEEEEEECCCCHHHHHHHHHHCCcEEecCCcc-ccCCCCCeEEEEcCC-C
Confidence 35688888999999999998887542222233322323221 2222221 22223 122233579999976 5
Q ss_pred CHHHHHHHHHHHHHHH
Q psy5049 118 SANLWNRPHSPSLMAV 133 (153)
Q Consensus 118 T~edId~L~~~~L~~~ 133 (153)
++++++..++ .|..+
T Consensus 414 ~~~~i~~~~~-~l~~~ 428 (431)
T PRK15481 414 NDAEINRLAA-DLHQA 428 (431)
T ss_pred ChHHHHHHHH-HHHHH
Confidence 7999999877 66544
No 172
>PRK05367 glycine dehydrogenase; Provisional
Probab=83.40 E-value=6.3 Score=38.80 Aligned_cols=29 Identities=17% Similarity=0.200 Sum_probs=24.6
Q ss_pred CceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049 106 DGLSLYESSHLRSANLWNRPHSPSLMAVFR 135 (153)
Q Consensus 106 ~~RlRI~lsA~HT~edId~L~~~~L~~~~~ 135 (153)
.+.++|+.+-..|++|||++++ ++..+.+
T Consensus 846 ~~~l~i~ptE~~s~~elDr~~~-al~~i~~ 874 (954)
T PRK05367 846 AGTLMVEPTESESKAELDRFCD-AMIAIRA 874 (954)
T ss_pred CCEEEEEeeecCCHHHHHHHHH-HHHHHHH
Confidence 5679999999999999999999 7755543
No 173
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=83.24 E-value=8 Score=34.16 Aligned_cols=89 Identities=7% Similarity=-0.059 Sum_probs=55.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHhC----CCcccCCCCCCeEEEEcCCc-------hHHHhcc------ccccCCCCCCCCc
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRL----GLIVYGHRDSPVVPVLVFFF-------SKVGQTS------IGLGVEQTALNDG 107 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~----G~~~~~~s~SPIiPV~~g~~-------~~~~~~a------~~i~~PtVP~g~~ 107 (153)
+.++..++.++.-.+|+++|++. ++.....+...++.+.+.++ +.+..+. ..+..|.-+.+ .
T Consensus 336 ~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~~~~~~~~~-~ 414 (443)
T PRK06058 336 EEDDLVARARQIEALMTDRLRALAAEDDRIGDVRGRGAMIAIELVKPGTTEPDAELTKALAAAAHAAGVIVLTCGTYG-N 414 (443)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHhhCCcEEeeeccceEEEEEEecCCCCCCcHHHHHHHHHHHHHCCeEEeccCCCC-C
Confidence 44578888899999999999763 22100123345555555321 1122221 23344432322 5
Q ss_pred eEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049 108 LSLYESSHLRSANLWNRPHSPSLMAVFR 135 (153)
Q Consensus 108 RlRI~lsA~HT~edId~L~~~~L~~~~~ 135 (153)
.+|+.....||++|||++++ .++++.+
T Consensus 415 ~lr~~Ppl~~t~~~i~~~~~-~l~~~l~ 441 (443)
T PRK06058 415 VIRLLPPLVIGDELLREGLD-VLEAALA 441 (443)
T ss_pred EEEEECCCccCHHHHHHHHH-HHHHHHH
Confidence 89999999999999999998 7776543
No 174
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=83.20 E-value=6.1 Score=35.18 Aligned_cols=110 Identities=13% Similarity=0.088 Sum_probs=60.1
Q ss_pred HHHhHHHHHHHhhhc--ccEEeecCCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEc
Q psy5049 7 LAQNTRYFRRKLNRL--GLILYVLFQAQTKPPRSHCICFISGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLV 84 (153)
Q Consensus 7 ~~~~~~~~~~~l~~~--g~~~~~~~~~~~~p~~~~~l~~~~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~ 84 (153)
+..=+.+|.++|... ++.+-|+....+|=.+...+...+++ .+--.|...|+-+ ++.|..-.=-+
T Consensus 265 ~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~~f~gv~gE-----------~ll~~L~~~gI~v--StGSACsS~~~ 331 (386)
T COG1104 265 LRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSFPGVEGE-----------SLLLALDLAGIAV--STGSACSSGSL 331 (386)
T ss_pred HHHHHHHHHHHHHhcCCcEEEcCCcccCCCCeEEEEeCCCcHH-----------HHHHhccccCeEE--eccccccCCCC
Confidence 333345588888875 77777765344443322224444443 2333455556544 23343111001
Q ss_pred CCchHHHhccccccCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049 85 FFFSKVGQTSIGLGVEQTALNDGLSLYESSHLRSANLWNRPHSPSLMAVFR 135 (153)
Q Consensus 85 g~~~~~~~~a~~i~~PtVP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~ 135 (153)
. +..+. .+...+. ..-.+-+||+++...|+||+|++++ ++..+.+
T Consensus 332 ~-pShVL---~AmG~~~-e~a~~siR~S~g~~tt~eei~~~~~-~l~~~i~ 376 (386)
T COG1104 332 E-PSHVL---RAMGISE-ELAHGSIRFSLGRFTTEEEIDAAAE-ALKEIIK 376 (386)
T ss_pred C-ccHHH---HHcCCCh-HHhCccEEEEcCCCCCHHHHHHHHH-HHHHHHH
Confidence 0 11111 2333333 3446899999999999999999998 7765543
No 175
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=83.06 E-value=17 Score=30.71 Aligned_cols=82 Identities=9% Similarity=0.011 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCC-chHHHhcc----ccccCCC-CCCCCceEEEEeeCCCCHH
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFF-FSKVGQTS----IGLGVEQ-TALNDGLSLYESSHLRSAN 120 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~-~~~~~~~a----~~i~~Pt-VP~g~~RlRI~lsA~HT~e 120 (153)
++.++.+.++-.++.+.|++.|+.+. .+.+.-+-+-+.. ..+..+.. +.++ |. .+....-+||+++ +++
T Consensus 282 ~~~~~~~~~~r~~l~~~L~~~g~~~~-p~~g~fl~~~~~~~~~~l~~~l~~~gi~v~-p~~~~~~~~~iRi~~~---~~~ 356 (371)
T PRK05166 282 AKGVALALAERERLKKELAEMGYRIA-PSRANFLFFDARRPASAVAEALLRQGVIVK-PWKQPGFETFIRVSIG---SPE 356 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHCcCeeC-CCcCCEEEEeCCCCHHHHHHHHHHCCeEEe-cCCCCCCCCeEEEEcC---CHH
Confidence 44466777888889999998887653 3445544333322 22222222 2222 22 1233678999998 577
Q ss_pred HHHHHHHHHHHHHH
Q psy5049 121 LWNRPHSPSLMAVF 134 (153)
Q Consensus 121 dId~L~~~~L~~~~ 134 (153)
+.+++.+ +|+.+.
T Consensus 357 ~~~~l~~-~l~~i~ 369 (371)
T PRK05166 357 ENDHFVA-ALDKVL 369 (371)
T ss_pred HHHHHHH-HHHHHh
Confidence 7888887 777653
No 176
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=82.97 E-value=2.1 Score=37.94 Aligned_cols=55 Identities=25% Similarity=0.230 Sum_probs=38.2
Q ss_pred HHHHHHHhHHHHHHHhhhcccEEeecCCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHhCCCcc
Q psy5049 3 LISVLAQNTRYFRRKLNRLGLILYVLFQAQTKPPRSHCICFISGIRRISVLAHNTRYFRRKLNRLGLIV 71 (153)
Q Consensus 3 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~~~l~~~~~~~rr~~L~~ni~~fr~~L~~~G~~~ 71 (153)
...+|.+|++|||+.+...||.+ +...+++.|+ +..... + +..+...|.+.|+.+
T Consensus 295 ~r~~L~~~~~~~~~~~~~~~~~~-~~s~s~I~pv----~~gd~~---~------a~~~s~~l~~~Gi~v 349 (388)
T COG0156 295 RRERLQELAAFFRSLLKALGLVL-LPSESPIIPV----ILGDEE---R------ALEASRALLEEGIYV 349 (388)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcc-CCCCCCeeee----EeCCHH---H------HHHHHHHHHHCCeeE
Confidence 34688999999999999999996 6667777774 322221 1 345556666668765
No 177
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=82.08 E-value=8.1 Score=33.06 Aligned_cols=81 Identities=7% Similarity=-0.147 Sum_probs=47.5
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEc--CC--c-hHHHhcc----ccccCCCC-CCCCceEEEEeeC
Q psy5049 46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLV--FF--F-SKVGQTS----IGLGVEQT-ALNDGLSLYESSH 115 (153)
Q Consensus 46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~--g~--~-~~~~~~a----~~i~~PtV-P~g~~RlRI~lsA 115 (153)
.+++++.++++..++++.+.+.+ +.. +.+. .+++ .. . +.+..+. +.+++-.- +....-+|||+..
T Consensus 252 ~~~~~~~l~~r~~~~~~~l~~~~--~~~-~~~~--f~~~~~~~~~~~~~~~~ll~~~gV~v~~~~~f~~~~~~vRis~~~ 326 (346)
T TIGR03576 252 LSRIRDAFKRKEEVYLRLFDKLN--VER-TPTG--FVIKGVEEEKLIEIGLDLLRNYGIITITAVGMPGASKTLRFDLAA 326 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC--CCc-CCCe--EEEEeCCCCCHHHHHHHHHHhCCEEEeCCcccCCCCCeEEEEEec
Confidence 36789999999999999998543 322 2233 2333 21 1 2333332 33332111 2225689999997
Q ss_pred CC-CHHHHHHHHHHHHHH
Q psy5049 116 LR-SANLWNRPHSPSLMA 132 (153)
Q Consensus 116 ~H-T~edId~L~~~~L~~ 132 (153)
.. ++.+.+++++ +++.
T Consensus 327 ~~~~~~~~~~~~~-al~~ 343 (346)
T TIGR03576 327 KDAERIGDDYLVE-AVKD 343 (346)
T ss_pred ChHHhcCHHHHHH-HHHh
Confidence 65 4558999888 6653
No 178
>PRK14808 histidinol-phosphate aminotransferase; Provisional
Probab=82.00 E-value=7.5 Score=32.69 Aligned_cols=76 Identities=8% Similarity=-0.001 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCc--hHHHhcc----ccccCCCCCCCCceEEEEeeCCCCHH
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFF--SKVGQTS----IGLGVEQTALNDGLSLYESSHLRSAN 120 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~--~~~~~~a----~~i~~PtVP~g~~RlRI~lsA~HT~e 120 (153)
.+.++.++++..++.+.|++.|+.+. .++++.+.+.++.. ....+.. ..++. .+ ..+||++.. .+
T Consensus 252 ~~~~~~~~~~r~~l~~~L~~~g~~~~-~~~g~f~~~~l~~~~~~~~~~~l~~~Gi~V~~--~~---~~~Risi~~---~~ 322 (335)
T PRK14808 252 EERTKFIVEERERMKSALREMGYRIT-DSRGNFVFIFMEKEEKERLLEHLRAKNIAVRS--FR---EGVRITIGK---RE 322 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEC-CCCCeEEEEeCCCccHHHHHHHHHHCCeEEEE--CC---CCeEEecCC---HH
Confidence 44567778888889999999998764 46778887777632 2222222 33332 22 469999876 47
Q ss_pred HHHHHHHHHHHH
Q psy5049 121 LWNRPHSPSLMA 132 (153)
Q Consensus 121 dId~L~~~~L~~ 132 (153)
+.+++++ +|+.
T Consensus 323 ~~~~~~~-~l~~ 333 (335)
T PRK14808 323 ENDMILK-ELEV 333 (335)
T ss_pred HHHHHHH-HHHh
Confidence 8888887 6654
No 179
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=81.65 E-value=17 Score=31.04 Aligned_cols=86 Identities=9% Similarity=0.067 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCC-----chHHH-hcc----ccccCCC---CCCCCceEEEEe
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFF-----FSKVG-QTS----IGLGVEQ---TALNDGLSLYES 113 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~-----~~~~~-~~a----~~i~~Pt---VP~g~~RlRI~l 113 (153)
...++.+.++..++.+.|++.|+.+........+-+-+.+ ..... .+. ..+ .|. -+.+...+||++
T Consensus 290 ~~~~~~~~~~~~~~~~~l~~~~~~~~~p~gg~~~~~~l~~~~~~~~~~~~~~l~~~~gv~v-~pg~~f~~~~~~~iRi~~ 368 (391)
T PRK07309 290 LPMKKEYIKRRDYIIEKMTDLGFKIIKPDGAFYIFAKIPAGYNQDSFKFLQDFARKKAVAF-IPGAAFGPYGEGYVRLSY 368 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCeecCCCeeEEEEEECCCCCCCCHHHHHHHHHHhCCEEE-eCchhhCCCCCCEEEEEe
Confidence 3457788889999999999888765322222222222221 12222 222 222 121 144568999999
Q ss_pred eCCCCHHHHHHHHHHHHHHHHhc
Q psy5049 114 SHLRSANLWNRPHSPSLMAVFRG 136 (153)
Q Consensus 114 sA~HT~edId~L~~~~L~~~~~~ 136 (153)
+. ++++++..++ .+..+.+.
T Consensus 369 ~~--~~~~l~~~i~-~l~~~~~~ 388 (391)
T PRK07309 369 AA--SMETIKEAMK-RLKEYMEE 388 (391)
T ss_pred cC--CHHHHHHHHH-HHHHHHHh
Confidence 85 6789999888 66655443
No 180
>PRK08088 4-aminobutyrate aminotransferase; Validated
Probab=80.37 E-value=10 Score=33.15 Aligned_cols=93 Identities=6% Similarity=-0.076 Sum_probs=54.4
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHhC----CCcccCCCCCCeEEEEcCC--------chHHHhcc-----cc-ccCCCC
Q psy5049 41 ICFISGIRRISVLAHNTRYFRRKLNRL----GLIVYGHRDSPVVPVLVFF--------FSKVGQTS-----IG-LGVEQT 102 (153)
Q Consensus 41 l~~~~~~~rr~~L~~ni~~fr~~L~~~----G~~~~~~s~SPIiPV~~g~--------~~~~~~~a-----~~-i~~PtV 102 (153)
+.....++..+++++..+++++.|... +......+....+.|.+.+ ...+..+. .. +..|..
T Consensus 312 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~v~g~G~~~~l~l~~~~~~~~p~~~~~~~l~~~~~~~Gv~~~~~~ 391 (425)
T PRK08088 312 LKVFEQENLLQKANALGEKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHSKPNAKLTAQIVARARDKGLILLSCG 391 (425)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeccceEEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCEEecCC
Confidence 333445678888888889988888743 2110001223445666521 11122222 22 233432
Q ss_pred CCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049 103 ALNDGLSLYESSHLRSANLWNRPHSPSLMAVFR 135 (153)
Q Consensus 103 P~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~ 135 (153)
+. ...+|++.+..+|++||+..++ .+....+
T Consensus 392 ~~-~~~iRl~~~~~~t~~ei~~~i~-~l~~~l~ 422 (425)
T PRK08088 392 PY-YNVLRILVPLTIEDAQIRQGLE-IIAQCFD 422 (425)
T ss_pred CC-CCEEEEECCCCcCHHHHHHHHH-HHHHHHH
Confidence 22 3679999999999999999888 7765543
No 181
>PLN02651 cysteine desulfurase
Probab=80.17 E-value=8.1 Score=32.59 Aligned_cols=78 Identities=8% Similarity=0.022 Sum_probs=48.2
Q ss_pred chHHHHHHHHHHHHHHHHHHhC--CCcccCC--CC--CC-eEEEEcCC--chHHHhc-c-ccc------cCC--------
Q psy5049 46 GIRRISVLAHNTRYFRRKLNRL--GLIVYGH--RD--SP-VVPVLVFF--FSKVGQT-S-IGL------GVE-------- 100 (153)
Q Consensus 46 ~~~rr~~L~~ni~~fr~~L~~~--G~~~~~~--s~--SP-IiPV~~g~--~~~~~~~-a-~~i------~~P-------- 100 (153)
.+..+++.++...++++.|.+. |+.+.+. .+ +| |+.+.+.+ .+.+... . +.+ ..+
T Consensus 257 ~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~L~~i~v~~g~~c~~~~~~~~~~~ 336 (364)
T PLN02651 257 MDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTLNLSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVL 336 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCcccCcCCEEEEEeCCCCHHHHHHHhCCEEEEchhhcCCCCCCcCHHH
Confidence 3666788888999999998753 7766552 11 24 88877753 2232222 1 111 111
Q ss_pred ---CCC--CCCceEEEEeeCCCCHHHHH
Q psy5049 101 ---QTA--LNDGLSLYESSHLRSANLWN 123 (153)
Q Consensus 101 ---tVP--~g~~RlRI~lsA~HT~edId 123 (153)
.+. ...+-+|++++..+|+||||
T Consensus 337 ~~~g~~~~~~~~~vR~S~~~~~t~~did 364 (364)
T PLN02651 337 RALGVPEEMAHGSLRLGVGRFTTEEEVD 364 (364)
T ss_pred HHcCCChHHhCceEEEEcCCCCCHHHcC
Confidence 011 12468999999999999986
No 182
>PRK07683 aminotransferase A; Validated
Probab=80.07 E-value=18 Score=30.83 Aligned_cols=81 Identities=12% Similarity=-0.001 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEE-cC----CchH-HHhcc--------ccccCCCCCCCCceEEEE
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVL-VF----FFSK-VGQTS--------IGLGVEQTALNDGLSLYE 112 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~-~g----~~~~-~~~~a--------~~i~~PtVP~g~~RlRI~ 112 (153)
.+.++++.++.+++.+.|.+.|+.+. .++...+-+. +. ++.. +..++ .+..|. +.+...+||+
T Consensus 286 ~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~--~~~~~~~Ri~ 362 (387)
T PRK07683 286 KMMRHQYKKRRDYVYNRLISMGLDVE-KPTGAFYLFPSIGHFTMSSFDFALDLVEEAGLAVVPGSAFS--EYGEGYVRLS 362 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccc-CCCeeEEEEEecccCCCCHHHHHHHHHHhCCEEEcCchhhC--CCCCCeEEEE
Confidence 35688889999999999998887643 2333322121 11 1111 21221 222332 3346789999
Q ss_pred eeCCCCHHHHHHHHHHHHHHH
Q psy5049 113 SSHLRSANLWNRPHSPSLMAV 133 (153)
Q Consensus 113 lsA~HT~edId~L~~~~L~~~ 133 (153)
++. +++++...++ .|.++
T Consensus 363 ~~~--~~~~~~~al~-~l~~~ 380 (387)
T PRK07683 363 YAY--SIETLKEGLD-RLEAF 380 (387)
T ss_pred ecC--CHHHHHHHHH-HHHHH
Confidence 974 6888888666 55543
No 183
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=79.50 E-value=13 Score=31.56 Aligned_cols=62 Identities=13% Similarity=0.105 Sum_probs=34.1
Q ss_pred HHHHhHHHHHHHhhhcccEEeecCCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHhCCCc
Q psy5049 6 VLAQNTRYFRRKLNRLGLILYVLFQAQTKPPRSHCICFISGIRRISVLAHNTRYFRRKLNRLGLI 70 (153)
Q Consensus 6 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~~~l~~~~~~~rr~~L~~ni~~fr~~L~~~G~~ 70 (153)
+..+|++||+++|..+||.+++...+. .++. . +...........-.+....+.+.|.+.|+.
T Consensus 272 ~~~~~~~~l~~~L~~~g~~~~~~~~s~-t~~v-~-~~~~~~~~~~~~~~~~~~~~~~~L~e~GI~ 333 (370)
T TIGR02539 272 EEVKKTRWFVAELEDIGFIQLGQKPKE-HDLV-K-FETPGFHEIAQKHKRRGYFLYEELKKRGIH 333 (370)
T ss_pred HHHHHHHHHHHHHHhCCcEEEccCCCc-CceE-E-EECCchhHHhhhhccccHHHHHHHHhCCCc
Confidence 445778999999999999998643322 2321 0 110000000001112335678888888875
No 184
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=78.75 E-value=20 Score=30.62 Aligned_cols=81 Identities=9% Similarity=-0.036 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc----ccccCCCCCCCCceEEEEeeCCCCHHHH
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS----IGLGVEQTALNDGLSLYESSHLRSANLW 122 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a----~~i~~PtVP~g~~RlRI~lsA~HT~edI 122 (153)
.+.++...++..++.+.++..|+.+. .+++.-+-+-+.+........ +.|+. .+ .-+||++. +.+|.
T Consensus 272 ~~~~~~~~~~r~~~~~~l~~~g~~~~-~~~~nf~~~~~~~~~~~~~~l~~~GI~Vr~--~~---~~iRis~~---~~~~~ 342 (366)
T PRK01533 272 EEIVRVNTEGLRQYESFCKENEIPFY-QSQTNFIFLPVENGGEIYEACAHAGFIIRP--FP---NGVRITVG---TREQN 342 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccC-CCcCcEEEEeCCCHHHHHHHHHHCCcEEcc--CC---CceEEeCC---CHHHH
Confidence 34466677788888888888888764 355664444443333333322 44453 23 45999975 56999
Q ss_pred HHHHHHHHHHHHhcC
Q psy5049 123 NRPHSPSLMAVFRGG 137 (153)
Q Consensus 123 d~L~~~~L~~~~~~~ 137 (153)
+++++ +|+.+.+..
T Consensus 343 ~~l~~-al~~~~~~~ 356 (366)
T PRK01533 343 EGVIS-VLQQHFENK 356 (366)
T ss_pred HHHHH-HHHHHHHhc
Confidence 99999 888776553
No 185
>PLN02955 8-amino-7-oxononanoate synthase
Probab=78.53 E-value=2.1 Score=38.96 Aligned_cols=57 Identities=16% Similarity=0.162 Sum_probs=36.9
Q ss_pred HHHHHHhHHHHHHHhhhcccEEeecCCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEE
Q psy5049 4 ISVLAQNTRYFRRKLNRLGLILYVLFQAQTKPPRSHCICFISGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVP 81 (153)
Q Consensus 4 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~~~l~~~~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiP 81 (153)
.++|.+|.+|||+. +||.+ .+++.|+ +.... +.+..+.+.|.+.|+.+. .-..|.+|
T Consensus 373 r~~L~~n~~~fr~~---~G~~~----~sPI~pI----~ig~~---------~~a~~~~~~L~~~Gi~v~-~i~yPtVP 429 (476)
T PLN02955 373 RKAIWERVKEFKAL---SGVDI----SSPIISL----VVGNQ---------EKALKASRYLLKSGFHVM-AIRPPTVP 429 (476)
T ss_pred HHHHHHHHHHHHHh---cCCCC----CCCEEEE----EeCCH---------HHHHHHHHHHHHCCCEEE-EECCCCCC
Confidence 46899999999994 58874 4666664 32222 223457778888998763 23456555
No 186
>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.
Probab=78.45 E-value=8.9 Score=34.55 Aligned_cols=78 Identities=19% Similarity=0.129 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcCCchHHHhcc-----ccccCCCCCCCCceEEEEeeCCCCHH
Q psy5049 47 IRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVFFFSKVGQTS-----IGLGVEQTALNDGLSLYESSHLRSAN 120 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g~~~~~~~~a-----~~i~~PtVP~g~~RlRI~lsA~HT~e 120 (153)
.+.-++...|++|++++|.+. ++......-.--+-+..++ ..+.++. ..+..+- |. ...+-||++-.||+|
T Consensus 344 ~~iA~~~~~~A~yl~~~L~~~~~~~~~~~~f~e~v~~~~~~-~~~~~l~~~~~~~gl~~~~-~~-~~~~li~~TE~~t~e 420 (429)
T PF02347_consen 344 REIAERIHLNAHYLAERLKKIYGLPFDNPFFFEFVVVFSKD-KEVEELLKRGIEGGLNLRY-PD-DGALLICVTETRTKE 420 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTTBECSSSSSBSSEEEEESS--HHHHHHHHTT----EEEGG-G--SSEEEEE--TT--HH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccCCCCceeeeeecCCc-HHHHHHHHHHHhcCCCccc-cC-CCeEEEEccCCCCHH
Confidence 566677889999999999986 3322111111122233332 3333333 3333333 22 338889999999999
Q ss_pred HHHHHHH
Q psy5049 121 LWNRPHS 127 (153)
Q Consensus 121 dId~L~~ 127 (153)
|||.+++
T Consensus 421 did~lv~ 427 (429)
T PF02347_consen 421 DIDRLVE 427 (429)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999987
No 187
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase. This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.
Probab=78.23 E-value=10 Score=32.74 Aligned_cols=83 Identities=8% Similarity=-0.030 Sum_probs=47.9
Q ss_pred chHHHHHHHHHHHHHHHHHH----hCCCcccCCCCCCeEEEEcCCc-------------hHHHhcc-----ccc-cCCCC
Q psy5049 46 GIRRISVLAHNTRYFRRKLN----RLGLIVYGHRDSPVVPVLVFFF-------------SKVGQTS-----IGL-GVEQT 102 (153)
Q Consensus 46 ~~~rr~~L~~ni~~fr~~L~----~~G~~~~~~s~SPIiPV~~g~~-------------~~~~~~a-----~~i-~~PtV 102 (153)
.....++++++..++++.|. +.|+.....+...++.|.+.++ ..+..+. ..+ ..|..
T Consensus 315 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~ 394 (423)
T TIGR00713 315 EEGVYTELDELAKRLAEGLSEVLEDTGIPHTVNRVGSMFSLFFTEEEVTNYADAKKSDTELFAKFFHEMLDKGVFLPPSQ 394 (423)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeccEEEEEEecCCCCChhhhhcccHHHHHHHHHHHHHCCeEEecCC
Confidence 33478888888888888775 4465431123467888866532 1111221 112 22221
Q ss_pred CCCCceEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049 103 ALNDGLSLYESSHLRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 103 P~g~~RlRI~lsA~HT~edId~L~~~~L~~~~ 134 (153)
..-+|++ ..||++||+.+++ .++.+.
T Consensus 395 ---~~~~~l~--~~~t~~~i~~~~~-~l~~~l 420 (423)
T TIGR00713 395 ---FEACFLS--AAHTEEDIENTIE-AAEEVF 420 (423)
T ss_pred ---ccceeeE--CCCCHHHHHHHHH-HHHHHH
Confidence 1235654 4599999999998 776554
No 188
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=77.23 E-value=18 Score=35.77 Aligned_cols=83 Identities=13% Similarity=0.086 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCcccCCC-CCCeEEEEcCCc--------hHHHhcc-----ccccCCCCC-CCCceEEEEee
Q psy5049 50 ISVLAHNTRYFRRKLNRLGLIVYGHR-DSPVVPVLVFFF--------SKVGQTS-----IGLGVEQTA-LNDGLSLYESS 114 (153)
Q Consensus 50 r~~L~~ni~~fr~~L~~~G~~~~~~s-~SPIiPV~~g~~--------~~~~~~a-----~~i~~PtVP-~g~~RlRI~ls 114 (153)
-+.-..|++|+.++|.+ ++.+.-.. ..+...=++.+- ..+.+++ ..+-+|++. ...+.+=|+.+
T Consensus 768 a~~ailnAnYl~~rL~~-~~~~l~~~~~~~~~hEfv~~~~~~~~~~g~~~~dIakrL~d~G~hapt~~~pv~g~lmiepT 846 (939)
T TIGR00461 768 SVVAILNANYMATRLKD-HYPILFVGTLKHVAHECILDLRPLKAKTGIEAIDVAKRLQDYGFHAPTLSFPVPGTLMVEPT 846 (939)
T ss_pred HHHHHHHHHHHHHHhhc-cCcccccCCCCceeEEEEEeccchhhhcCCCHHHHHHHHHhCCeeccccCCccCCeEEEEee
Confidence 34445699999999987 66653211 224222222111 1122222 444444432 12236667777
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q psy5049 115 HLRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 115 A~HT~edId~L~~~~L~~~~ 134 (153)
-..|++|||++++ ++..+.
T Consensus 847 E~eskeelD~f~~-al~~I~ 865 (939)
T TIGR00461 847 ESESLEELDRFCD-AMIAIK 865 (939)
T ss_pred ccCCHHHHHHHHH-HHHHHH
Confidence 7999999999999 664444
No 189
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=74.27 E-value=19 Score=32.21 Aligned_cols=87 Identities=10% Similarity=-0.015 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCC----------ch--HHHhcc-------ccc---cCCC-CC
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFF----------FS--KVGQTS-------IGL---GVEQ-TA 103 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~----------~~--~~~~~a-------~~i---~~Pt-VP 103 (153)
.+..+...++..+|.+.|.+.|+.+.....+.-+-+=+.. +. .+.++. .++ ..|- -+
T Consensus 315 ~~~~~~~~~~~~~l~~~L~~~G~~~~~p~Gg~~v~~d~~~~~~~~~~~~~~~~~~a~~L~~e~GV~~~~~~~f~~~~~~~ 394 (460)
T PRK13238 315 EDYLAYRIGQVEYLGEGLEEAGVPIQTPAGGHAVFVDAGKFLPHIPAEQFPAQALACELYLEAGIRGVEIGSLLLGRDPK 394 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCCeEccCCceEEEEEchhcCCCCCCCCCchHHHHHHHHHHcCeeeecccceecccCCC
Confidence 3444455567899999999999987533333322221211 11 111111 111 1111 11
Q ss_pred ------CCCceEEEEeeC-CCCHHHHHHHHHHHHHHHH
Q psy5049 104 ------LNDGLSLYESSH-LRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 104 ------~g~~RlRI~lsA-~HT~edId~L~~~~L~~~~ 134 (153)
.....+|+++.- ..|.+++|++++ +|..+.
T Consensus 395 ~~~~~~~~~~~~Rla~~rr~~~~~~~~~~~~-~l~~~~ 431 (460)
T PRK13238 395 TGEQLPAPAELLRLAIPRRVYTQSHMDYVAE-ALKAVK 431 (460)
T ss_pred CccccCCccceEEEecccccCCHHHHHHHHH-HHHHHH
Confidence 236899999985 459999999999 887776
No 190
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=74.13 E-value=28 Score=30.95 Aligned_cols=91 Identities=20% Similarity=0.090 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCC--CCCCeEEEEcCCc----hHHHhcc----ccccCCCC-CCCCceEEEEeeC
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVYGH--RDSPVVPVLVFFF----SKVGQTS----IGLGVEQT-ALNDGLSLYESSH 115 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~--s~SPIiPV~~g~~----~~~~~~a----~~i~~PtV-P~g~~RlRI~lsA 115 (153)
+.+-++-+.+..++++.+.++||.++.. ..||.+..+.-.. .+..... ..+.++.- |...--+||..+-
T Consensus 264 e~r~~RH~~~~~a~r~~~~alGl~~~~~~~~~s~tvta~~~P~g~~~~~~~~~~~~~~g~~i~gg~~~l~gkifRIGhMG 343 (383)
T COG0075 264 EARIARHRRLAEALRAGLEALGLELFADPERRSPTVTAIKVPEGVDDKKVRRALLKEYGVEIAGGQGPLKGKIFRIGHMG 343 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccCcccCCCceEEEECCCCCCcHHHHHHHHHhCCEEecccccccCccEEEEecCc
Confidence 7788888999999999999999988651 2277666554332 1222211 22333333 3345789999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCC
Q psy5049 116 LRSANLWNRPHSPSLMAVFRGGG 138 (153)
Q Consensus 116 ~HT~edId~L~~~~L~~~~~~~~ 138 (153)
.-+.+|+.++++ +++...+..|
T Consensus 344 ~~~~~dv~~~l~-ale~~L~~~g 365 (383)
T COG0075 344 NVRPEDVLAALA-ALEAALRELG 365 (383)
T ss_pred cCCHHHHHHHHH-HHHHHHHHcC
Confidence 999999999999 8887776544
No 191
>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type. This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.
Probab=73.56 E-value=30 Score=30.34 Aligned_cols=88 Identities=9% Similarity=-0.213 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhCC-CcccCC---CCCC-eEEEEcCCc--------------hHHHhcc---ccccCCCC-C
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLG-LIVYGH---RDSP-VVPVLVFFF--------------SKVGQTS---IGLGVEQT-A 103 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G-~~~~~~---s~SP-IiPV~~g~~--------------~~~~~~a---~~i~~PtV-P 103 (153)
+.+.++-+++...+++.+.++| +..... ..|| ++.+.+.++ .+..... ..+.+|.- +
T Consensus 262 e~~~~Rh~~~a~~l~~~l~~lg~l~~~~~~~~~rS~tvt~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~G~~~ 341 (374)
T TIGR01365 262 KPLIARADDNLAVLEAFVAKNNWIHFLAETPEIRSNTSVCLKVVDPAIDALDEDAQADFAKELISTLEKEGVAYDIGSYR 341 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcccCCCChhhcCCCeEEEEeCCccccccccchhhHHHHHHHHHHHHCCEEEeccccc
Confidence 6777888899999999999999 554331 2477 333444221 2222222 22233332 2
Q ss_pred CCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049 104 LNDGLSLYESSHLRSANLWNRPHSPSLMAVFR 135 (153)
Q Consensus 104 ~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~ 135 (153)
...--+||.-...++.+||+.+++ +|+-+.+
T Consensus 342 ~~~~~fRIg~~G~i~~~di~~l~~-~l~~~~~ 372 (374)
T TIGR01365 342 DAPSGLRIWCGATVEKSDLECLCP-WLDWAFA 372 (374)
T ss_pred cCCCceEEecCCcCCHHHHHHHHH-HHHHHHh
Confidence 223679999999999999999999 8875543
No 192
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=73.15 E-value=19 Score=30.85 Aligned_cols=85 Identities=12% Similarity=0.023 Sum_probs=48.0
Q ss_pred chHHHHHHHHHHHHHHHHHHhC-CCcccCCC-------CCCeEEEEc---C-CchHHHhcc----ccc-cCCCCCCCCce
Q psy5049 46 GIRRISVLAHNTRYFRRKLNRL-GLIVYGHR-------DSPVVPVLV---F-FFSKVGQTS----IGL-GVEQTALNDGL 108 (153)
Q Consensus 46 ~~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s-------~SPIiPV~~---g-~~~~~~~~a----~~i-~~PtVP~g~~R 108 (153)
+.+..++.+++..++++.|.+. |+.+.... +..++.+-. + +.....+.. ..| .-| -...++.
T Consensus 261 ~~~~~~~~~~~~~~l~~~L~~i~g~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~l~~~L~~~~~~I~~r~-~~~~~~~ 339 (363)
T TIGR01437 261 GKESGAEMVAKLTPFIEALNTLKGVSASIVQDEAGRDIARAEIRFDESELGMTAADVVQALRQGEPAIYTRG-YKANEGI 339 (363)
T ss_pred CcccHHHHHHHHHHHHHHHhcCCCeEEEEecCCCCCcCceEEEEEeccCCCCCHHHHHHHHhcCCCCEEEee-eeecCCe
Confidence 4556666777888999999976 66543111 112222222 1 112333322 112 111 1334679
Q ss_pred EEEEeeCCCCHHHHHHHHHHHHHHH
Q psy5049 109 SLYESSHLRSANLWNRPHSPSLMAV 133 (153)
Q Consensus 109 lRI~lsA~HT~edId~L~~~~L~~~ 133 (153)
+|+.... .+++|++.+++ +|.++
T Consensus 340 ~~l~~~~-~~~~e~~~~~~-~l~~~ 362 (363)
T TIGR01437 340 IEIDPRS-VTGGQLDIIVE-RIREI 362 (363)
T ss_pred EEEEeec-CCHHHHHHHHH-HHHHh
Confidence 9999997 45999999998 77653
No 193
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=72.41 E-value=35 Score=29.36 Aligned_cols=81 Identities=16% Similarity=0.108 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCC---chHHHh-cc---ccccCCCC---CCCCceEEEEeeCC
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFF---FSKVGQ-TS---IGLGVEQT---ALNDGLSLYESSHL 116 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~---~~~~~~-~a---~~i~~PtV---P~g~~RlRI~lsA~ 116 (153)
.+.++.+.++..++.+.|++.|+.+.....+.-+-+-+.+ ...... +. ..+.-|.- +.+..-+||++ .
T Consensus 315 ~~~~~~~~~~r~~l~~~L~~~~~~~~~~~g~~f~wi~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~--~ 392 (409)
T PRK07590 315 KELIDYYMENAKIIREGLESAGFEVYGGVNAPYIWVKTPDGMSSWDFFDKLLQEANVVGTPGSGFGPSGEGYFRLSA--F 392 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceecCCcceEEEEECCCCCCHHHHHHHHHHHCCEEEeChhHhCCCCCCEEEEEc--c
Confidence 3457788888899999999888765322234344444432 122111 11 11111221 34567899995 3
Q ss_pred CCHHHHHHHHHHHH
Q psy5049 117 RSANLWNRPHSPSL 130 (153)
Q Consensus 117 HT~edId~L~~~~L 130 (153)
.++++++..++ .+
T Consensus 393 ~~~~~l~~~l~-rl 405 (409)
T PRK07590 393 GSRENVLEAME-RI 405 (409)
T ss_pred CCHHHHHHHHH-HH
Confidence 47899988666 44
No 194
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=71.76 E-value=3.5 Score=36.13 Aligned_cols=32 Identities=13% Similarity=-0.002 Sum_probs=24.8
Q ss_pred HHHHHHhHHHHHHHhhhcccEEeec-CCCCCCC
Q psy5049 4 ISVLAQNTRYFRRKLNRLGLILYVL-FQAQTKP 35 (153)
Q Consensus 4 ~~~~~~~~~~~~~~l~~~g~~~~~~-~~~~~~p 35 (153)
.+++.+|++||+++|.++||.+.+. .++++.|
T Consensus 288 ~~~l~~~a~~l~~~L~~~G~~~~~~~~~t~i~~ 320 (416)
T PRK13034 288 AKQVIANAQALAEVLKERGYDLVSGGTDNHLLL 320 (416)
T ss_pred HHHHHHHHHHHHHHHHHcCCEeccCCCCCcEEE
Confidence 5789999999999999999998542 3344444
No 195
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=71.25 E-value=55 Score=28.41 Aligned_cols=87 Identities=17% Similarity=0.132 Sum_probs=56.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHhCCCc-ccCCCCCCeEEEEcCCch--HHHhcc----ccccCC-CCCCCCceEEEEeeCC
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRLGLI-VYGHRDSPVVPVLVFFFS--KVGQTS----IGLGVE-QTALNDGLSLYESSHL 116 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~G~~-~~~~s~SPIiPV~~g~~~--~~~~~a----~~i~~P-tVP~g~~RlRI~lsA~ 116 (153)
...+.++++.+.-.++.+.|+..|+. +. .+..+-+-+-+++.+ .+.+.. +.+|.- ..+.+...+||++.
T Consensus 260 ~~~~~~~~~~~~r~rl~~~l~~~~~~~v~-pS~aNFvlv~~~~~~~~~l~~~L~~~giivR~~~~~~~~~~~lRitvg-- 336 (356)
T COG0079 260 YLEESVERIREERERLYAALKALGLFGVF-PSQANFVLVRVPDAEAAALAEALLKKGILVRDCSSVGLLPGYLRITVG-- 336 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCeec-CCCCcEEEEECCCccHHHHHHHHHHCCEEEEeCCCCCCCCCeEEEEeC--
Confidence 34667777888889999999999844 43 355665555544322 222222 344433 23556679999986
Q ss_pred CCHHHHHHHHHHHHHHHHhc
Q psy5049 117 RSANLWNRPHSPSLMAVFRG 136 (153)
Q Consensus 117 HT~edId~L~~~~L~~~~~~ 136 (153)
|+||-+++++ +|..+...
T Consensus 337 -t~een~~ll~-AL~~~~~~ 354 (356)
T COG0079 337 -TPEENDRLLA-ALREVLKG 354 (356)
T ss_pred -CHHHHHHHHH-HHHHHHhc
Confidence 5788899998 88776543
No 196
>PRK05942 aspartate aminotransferase; Provisional
Probab=71.14 E-value=30 Score=29.56 Aligned_cols=83 Identities=8% Similarity=-0.021 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEE-EEcCC---chH-HHhcc----ccccCCC--CCCCCceEEEEeeC
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVP-VLVFF---FSK-VGQTS----IGLGVEQ--TALNDGLSLYESSH 115 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiP-V~~g~---~~~-~~~~a----~~i~~Pt--VP~g~~RlRI~lsA 115 (153)
++.+++++++..++.+.|.+.|+.+. .+++..+- +-+.. ... +.++. +.+.+-. -+.+...+||++.+
T Consensus 296 ~~~~~~~~~~~~~~~~~L~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~ 374 (394)
T PRK05942 296 QQVQERYRTRRDFLIQGLGELGWNIP-PTKATMYLWVPCPVGMGSTDFALNVLQKTGVVVTPGNAFGEGGEGYVRISLIA 374 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCeec-CCCeeeEEEEECCCCCCHHHHHHHHHHHCCEEEeCChhhCcCCCCeEEEEecC
Confidence 56788889999999999998887653 34444322 22221 121 22221 2222111 12346799999963
Q ss_pred CCCHHHHHHHHHHHHHHHHhc
Q psy5049 116 LRSANLWNRPHSPSLMAVFRG 136 (153)
Q Consensus 116 ~HT~edId~L~~~~L~~~~~~ 136 (153)
+.+.+.+ +++.+.+.
T Consensus 375 -----~~~~l~~-~l~~l~~~ 389 (394)
T PRK05942 375 -----DCDRLGE-ALDRLKQA 389 (394)
T ss_pred -----CHHHHHH-HHHHHHHh
Confidence 2355555 66665543
No 197
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=70.84 E-value=6.6 Score=32.80 Aligned_cols=27 Identities=22% Similarity=0.078 Sum_probs=23.0
Q ss_pred HHHHHHhHHHHHHHhhhcccEEeecCC
Q psy5049 4 ISVLAQNTRYFRRKLNRLGLILYVLFQ 30 (153)
Q Consensus 4 ~~~~~~~~~~~~~~l~~~g~~~~~~~~ 30 (153)
.+++.+.++|++++|+..|+.+++.-+
T Consensus 263 ~~~~~~l~~~l~~~l~~~g~~~~~~~~ 289 (353)
T TIGR03235 263 EVKLRAMRNQLRDALQTLGVKLNGDPA 289 (353)
T ss_pred HHHHHHHHHHHHHHhccCCeEEeCCcc
Confidence 467888999999999999999987543
No 198
>PRK06917 hypothetical protein; Provisional
Probab=69.55 E-value=30 Score=30.76 Aligned_cols=89 Identities=8% Similarity=-0.036 Sum_probs=52.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHhCC--CcccC--CCCCCeEEEEcCCc-----------hHHHhcc------ccccCCCC-
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRLG--LIVYG--HRDSPVVPVLVFFF-----------SKVGQTS------IGLGVEQT- 102 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~G--~~~~~--~s~SPIiPV~~g~~-----------~~~~~~a------~~i~~PtV- 102 (153)
+.+++.++++++..+|++.|+++- +...+ .+..-++.|.+-.+ +.+..+. -.+.+|.-
T Consensus 322 ~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~ 401 (447)
T PRK06917 322 EKHNLPEKAAEKGEYLIKGLQKVQQQSTIIGDVRGKGLLIGVEFVADKKTKQPFSKSQAVASELISVAAKNGLLLYPAVA 401 (447)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeecceEEEEEEeccCCcCCCCcchhHHHHHHHHHHHhCCcEEEeccc
Confidence 455788999999999999998642 21110 12233455544211 1122221 23344431
Q ss_pred ---CCCCceEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049 103 ---ALNDGLSLYESSHLRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 103 ---P~g~~RlRI~lsA~HT~edId~L~~~~L~~~~ 134 (153)
..+...+|++..-.||++|||++++ +++...
T Consensus 402 ~~~g~~~~~i~l~Ppl~it~~eid~~~~-~l~~~l 435 (447)
T PRK06917 402 GQDGKEGDAVIIAPPMTITYSELDELLS-IFAKSV 435 (447)
T ss_pred ccCCCCCCEEEEECCCcCCHHHHHHHHH-HHHHHH
Confidence 1123578999999999999999998 775443
No 199
>PLN02242 methionine gamma-lyase
Probab=69.47 E-value=15 Score=32.37 Aligned_cols=78 Identities=12% Similarity=0.025 Sum_probs=50.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHhCCCcccCC-------------------CCCCeEEEEcCCchHHHhcc----cc--ccC
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRLGLIVYGH-------------------RDSPVVPVLVFFFSKVGQTS----IG--LGV 99 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~-------------------s~SPIiPV~~g~~~~~~~~a----~~--i~~ 99 (153)
..+.++++..+|..++.+.|.+.++.+.-. +.+.++.+.+++.+.+.++. .. +..
T Consensus 275 tl~~r~~~~~~~a~~la~~L~~~~~~V~yP~l~~~p~~~~~~~~~~~~~g~g~~~sf~l~~~~~~~~f~~~l~~~~~~~~ 354 (418)
T PLN02242 275 HLSLRMKEHCRRAMEYAKRMKELGLKVIYPGLEDHPQHALLKSMANKGYGFGGLLCLDMDTEERANRLMRYLQNSTQFGF 354 (418)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCEEECCCCCCCccHHHHHHhcccCCCceeEEEEEECCHHHHHHHHHHhhcccccce
Confidence 456788999999999999999887654311 22457778887665555554 11 225
Q ss_pred CCCCCCCceEEEEeeCCCCHHHH
Q psy5049 100 EQTALNDGLSLYESSHLRSANLW 122 (153)
Q Consensus 100 PtVP~g~~RlRI~lsA~HT~edI 122 (153)
++|..|..+..++..+.+|..++
T Consensus 355 ~~~slG~~~sl~~~p~~~~~~~~ 377 (418)
T PLN02242 355 MAVSLGYYETLMSCSGSSTSSEL 377 (418)
T ss_pred eeecCCCCCceeeCCCccccccC
Confidence 56666666666665555554444
No 200
>PRK06149 hypothetical protein; Provisional
Probab=68.65 E-value=17 Score=35.63 Aligned_cols=83 Identities=7% Similarity=-0.073 Sum_probs=50.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEE-----------cCC-------chHHHhcc------ccccCC
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVL-----------VFF-------FSKVGQTS------IGLGVE 100 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~-----------~g~-------~~~~~~~a------~~i~~P 100 (153)
+.+.+.++..+.-.||++.|+++. ..+|+++.+ +.+ .+.+..+. -.+..|
T Consensus 863 ~~e~l~~~~~~~G~~l~~~L~~l~------~~~~~i~~vrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~l~~~Gvl~~~ 936 (972)
T PRK06149 863 REEKLQENARRVGDHLKARLEALA------DRHPLIGAVHGMGLYLGVELVRDRQTLEPATEETAAICDRLLELGVIMQP 936 (972)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHH------HhCCCeEEEeecceEEEEEEecCcccCCCChHHHHHHHHHHHhCCeEEee
Confidence 344566666666699999998641 223444333 221 12222222 333445
Q ss_pred CCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049 101 QTALNDGLSLYESSHLRSANLWNRPHSPSLMAVFR 135 (153)
Q Consensus 101 tVP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~ 135 (153)
+-+ ....+||...-.+|++|||.+++ +++....
T Consensus 937 ~g~-~~~vl~~~Ppl~it~~~id~~~~-~l~~~l~ 969 (972)
T PRK06149 937 TGD-HLNILKIKPPLCLDRESADFFVD-MLDRVLT 969 (972)
T ss_pred cCC-CCCEEEEECCCcCCHHHHHHHHH-HHHHHHH
Confidence 422 23568998888999999999998 7776553
No 201
>PRK12414 putative aminotransferase; Provisional
Probab=68.44 E-value=47 Score=28.29 Aligned_cols=78 Identities=8% Similarity=-0.072 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEE-EcC-----CchHHH-hcc--------ccccCCCCCCCCceEEE
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPV-LVF-----FFSKVG-QTS--------IGLGVEQTALNDGLSLY 111 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV-~~g-----~~~~~~-~~a--------~~i~~PtVP~g~~RlRI 111 (153)
.+.++.+.++..++.+.|++.|+.+. .++...+-+ -+. ++.... ... .+..|..-..+..-+||
T Consensus 287 ~~~~~~~~~~r~~l~~~L~~~g~~~~-~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRi 365 (384)
T PRK12414 287 LGLGAFYQRKRDLLARELAGSRFELL-PSEGSFFMLARFRHFSDESDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRL 365 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCeec-CCCcceEEEEcccccCCCCHHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEE
Confidence 35678889999999999999887653 233333222 121 122222 222 22233222223568999
Q ss_pred EeeCCCCHHHHHHHHH
Q psy5049 112 ESSHLRSANLWNRPHS 127 (153)
Q Consensus 112 ~lsA~HT~edId~L~~ 127 (153)
+++. ++++++..++
T Consensus 366 s~~~--~~~~~~~~~~ 379 (384)
T PRK12414 366 SFSK--DDATLVEGAR 379 (384)
T ss_pred EecC--CHHHHHHHHH
Confidence 9995 6888888555
No 202
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=68.37 E-value=59 Score=27.55 Aligned_cols=80 Identities=10% Similarity=0.103 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCC-----chHHH-hcc----ccc----cCCCCCCCCceEEEE
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFF-----FSKVG-QTS----IGL----GVEQTALNDGLSLYE 112 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~-----~~~~~-~~a----~~i----~~PtVP~g~~RlRI~ 112 (153)
++.++.++++-.++.+.|++.|+.....+.+.-+-+-+.+ ..... .+. +.+ .|. +.+..-+||+
T Consensus 292 ~~~~~~~~~~r~~l~~~L~~~~~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~--~~~~~~iRi~ 369 (388)
T PRK07366 292 QQTVQIFRQRRDAFINALHQIGWPVPLPEATMYVWAKLPEPWQGNSVEFCTQLVAQTGVAASPGSGFG--KSGEGYVRFA 369 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcccCCCeeEEEEEECCcccCCCHHHHHHHHHHhCCEEEeCchHhC--cCCCCeEEEE
Confidence 4567888888899999999888753222222222222221 12211 121 222 232 1234679999
Q ss_pred eeCCCCHHHHHHHHHHHHH
Q psy5049 113 SSHLRSANLWNRPHSPSLM 131 (153)
Q Consensus 113 lsA~HT~edId~L~~~~L~ 131 (153)
++ +++++++..++ .|.
T Consensus 370 ~~--~~~~~l~~~l~-rl~ 385 (388)
T PRK07366 370 LV--HDPDILEEAVE-RIA 385 (388)
T ss_pred ec--CCHHHHHHHHH-HHH
Confidence 97 46888888665 443
No 203
>PRK07550 hypothetical protein; Provisional
Probab=68.25 E-value=45 Score=28.23 Aligned_cols=80 Identities=16% Similarity=0.062 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcCC----chHHHh-cc--------ccccCCCCCCCCceEEEEe
Q psy5049 48 RRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVFF----FSKVGQ-TS--------IGLGVEQTALNDGLSLYES 113 (153)
Q Consensus 48 ~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g~----~~~~~~-~a--------~~i~~PtVP~g~~RlRI~l 113 (153)
+.++++.++.+++.+.|.+. ++.+. .+.+..+-+.+.. ...... ++ .+..|. +.+..-+||++
T Consensus 290 ~~~~~~~~~~~~l~~~L~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f~--~~~~~~iRis~ 366 (386)
T PRK07550 290 GNRAEIARRRDAFRAVFARLPGWELL-ASGAYFAYVRHPFPDRPSREVARRLAKEAGILCLPGTMFG--PGQEGYLRLAF 366 (386)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCceeC-CCceEEEEecCCCCCCCHHHHHHHHHHhcCEEEeCchhhC--CCCCCEEEEEe
Confidence 45677888899999999875 55442 2333333333321 222222 21 112231 23456799999
Q ss_pred eCCCCHHHHHHHHHHHHHH
Q psy5049 114 SHLRSANLWNRPHSPSLMA 132 (153)
Q Consensus 114 sA~HT~edId~L~~~~L~~ 132 (153)
+ ..+++++++.++ .+..
T Consensus 367 ~-~~~~~~~~~~~~-~l~~ 383 (386)
T PRK07550 367 A-NADVAGIGELVE-RLRA 383 (386)
T ss_pred e-cCCHHHHHHHHH-HHHh
Confidence 5 456899999776 5543
No 204
>PLN00144 acetylornithine transaminase
Probab=67.47 E-value=46 Score=28.71 Aligned_cols=88 Identities=13% Similarity=0.005 Sum_probs=52.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHhC--CCcccC--CCCCCeEEEEcCCc-hHHHhcc---ccccCCCCCCCCceEEEEeeCC
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRL--GLIVYG--HRDSPVVPVLVFFF-SKVGQTS---IGLGVEQTALNDGLSLYESSHL 116 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~--G~~~~~--~s~SPIiPV~~g~~-~~~~~~a---~~i~~PtVP~g~~RlRI~lsA~ 116 (153)
+.+...+++++..++|++.|.+. ++...+ ......+-|-+..+ ......+ -.+..|.-+ ...+|++.+..
T Consensus 284 ~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~vrg~G~~~~l~l~~~~~~~~~~~~~~Gv~i~~~~~--~~~lrl~p~~~ 361 (382)
T PLN00144 284 SKPGFLASVAKKGEYLRELLRRKLGGNPHVKEVRGVGLLVGIQLDVPAGPLVDACRDSGLLVLTAGK--GDVVRLVPPLV 361 (382)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHhhCCCceeeecCceEEEEEecCccHHHHHHHHHCCeEEeecCC--CCEEEEeCCCc
Confidence 55778889999999988887642 221111 12234444444211 2222222 222444422 37899999999
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q psy5049 117 RSANLWNRPHSPSLMAVFR 135 (153)
Q Consensus 117 HT~edId~L~~~~L~~~~~ 135 (153)
+|++||+..++ .++....
T Consensus 362 ~~~~~i~~~~~-~l~~~l~ 379 (382)
T PLN00144 362 ISEAELEQAVE-ILADCLP 379 (382)
T ss_pred cCHHHHHHHHH-HHHHHHH
Confidence 99999999988 7766554
No 205
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=67.44 E-value=38 Score=30.25 Aligned_cols=86 Identities=8% Similarity=-0.015 Sum_probs=53.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHhC----CCcccCCCCCCeEEEEcCCc--------hHHHhcc-----cc-ccCCCCCCCC
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRL----GLIVYGHRDSPVVPVLVFFF--------SKVGQTS-----IG-LGVEQTALND 106 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~----G~~~~~~s~SPIiPV~~g~~--------~~~~~~a-----~~-i~~PtVP~g~ 106 (153)
+.+.+.++++++..+|++.|++. ++.....+....+.|.+..+ ..+..+. .. +..|. +.
T Consensus 346 ~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~---~~ 422 (459)
T PRK06082 346 EQEGLLEKVKADSQFMRERLLEMKAKYPLIGDVRGIGLLWGVELVTDRHTKERAYDEAEAVLYRCLNNGLSFKVS---QG 422 (459)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHhhCCCeeeeeeccceeEEEEccCccccCccHHHHHHHHHHHHhCCCEEEec---CC
Confidence 34568999999999999999864 22110012334555555321 1111111 22 23332 34
Q ss_pred ceEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049 107 GLSLYESSHLRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 107 ~RlRI~lsA~HT~edId~L~~~~L~~~~ 134 (153)
..+|++..-.+|++|||++++ +++...
T Consensus 423 ~~i~~~Ppl~it~~eid~~~~-~l~~~l 449 (459)
T PRK06082 423 NVIQLSPPLIITREELTQALA-ILEEAI 449 (459)
T ss_pred CEEEEeCCCccCHHHHHHHHH-HHHHHH
Confidence 779999888999999999998 776544
No 206
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=66.79 E-value=57 Score=27.95 Aligned_cols=78 Identities=18% Similarity=0.162 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCC---chHHHhc-c---ccccCCCC---CCCCceEEEEeeCCC
Q psy5049 48 RRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFF---FSKVGQT-S---IGLGVEQT---ALNDGLSLYESSHLR 117 (153)
Q Consensus 48 ~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~---~~~~~~~-a---~~i~~PtV---P~g~~RlRI~lsA~H 117 (153)
+.++.++++-.++.+.|.+.|+.+.....+.-+-+-+.+ ....... . ..+..|.- +.+...+||++..
T Consensus 309 ~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~f~~v~l~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~-- 386 (402)
T TIGR03542 309 EAISYYMENARILRKALEAAGFKVYGGEHAPYLWVKTPEGISSWDFFDFLLYQYHVVGTPGSGFGPSGEGFVRFSAFG-- 386 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhcCceecCCCceeEEEEECCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC--
Confidence 345667788888999998888765332234444444432 1222221 1 11122221 3345789999643
Q ss_pred CHHHHHHHHH
Q psy5049 118 SANLWNRPHS 127 (153)
Q Consensus 118 T~edId~L~~ 127 (153)
++++++..++
T Consensus 387 ~~~~l~~~l~ 396 (402)
T TIGR03542 387 KRENIVEACE 396 (402)
T ss_pred CHHHHHHHHH
Confidence 7888888555
No 207
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases. This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.
Probab=66.62 E-value=43 Score=29.60 Aligned_cols=88 Identities=5% Similarity=-0.142 Sum_probs=53.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHhC--CCcccC--CCCCCeEEEEcCCch--------------HHHhcc------ccccCC
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRL--GLIVYG--HRDSPVVPVLVFFFS--------------KVGQTS------IGLGVE 100 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~--G~~~~~--~s~SPIiPV~~g~~~--------------~~~~~a------~~i~~P 100 (153)
+.++..++++++-.+|++.|++. .+...+ .+..-.+.|.+.++. .+..+. -.+.+|
T Consensus 322 ~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~ 401 (442)
T TIGR00709 322 KDDNLAQNAQERGERITSFLDDMIKEHPCIGNVRGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFENGLLLET 401 (442)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEEccCcccccccccCCcchHHHHHHHHHHHHCCeEEee
Confidence 45678889999999999999853 221111 122345555553221 111111 223344
Q ss_pred CCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049 101 QTALNDGLSLYESSHLRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 101 tVP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~ 134 (153)
. ..+...+|+...-.+|++|||.+++ ++++..
T Consensus 402 ~-~~~~~~l~~~Ppl~it~~ei~~~~~-~l~~~l 433 (442)
T TIGR00709 402 G-GREGEVFRLLCPITIDQEECEEGIS-RFKQAV 433 (442)
T ss_pred c-CCCCCEEEEECCCCCCHHHHHHHHH-HHHHHH
Confidence 3 3335789999999999999999988 765443
No 208
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=66.07 E-value=61 Score=28.39 Aligned_cols=87 Identities=6% Similarity=-0.141 Sum_probs=51.5
Q ss_pred chHHHHHHHHHHHHHHHHHHhC----CCcccCCCCCCeEEEEcCCc-------hHHHhcc------ccccCCCCCCCCce
Q psy5049 46 GIRRISVLAHNTRYFRRKLNRL----GLIVYGHRDSPVVPVLVFFF-------SKVGQTS------IGLGVEQTALNDGL 108 (153)
Q Consensus 46 ~~~rr~~L~~ni~~fr~~L~~~----G~~~~~~s~SPIiPV~~g~~-------~~~~~~a------~~i~~PtVP~g~~R 108 (153)
..+..+++++...++++.|... +......+...++-|.+.++ ..+..+. -.+.+|.-+ ....
T Consensus 316 ~~~~~~~~~~~g~~l~~~l~~l~~~~p~v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~g~-~~~~ 394 (421)
T PRK09792 316 KESLCERANQLGQRLKNTLIDAKESVPAIAAVRGLGSMIAAEFNDPQTGEPSAAIAQKIQQRALAQGLLLLTCGA-YGNV 394 (421)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhCCCcceecccceEEEEEecCCccCCcchHHHHHHHHHHHHCCcEEeecCC-CCCE
Confidence 3467778888888888888643 22111112234555655433 1122221 222344312 2478
Q ss_pred EEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049 109 SLYESSHLRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 109 lRI~lsA~HT~edId~L~~~~L~~~~ 134 (153)
+|+..+..+|++||++.++ +++...
T Consensus 395 irl~P~l~i~~~ei~~~~~-~l~~~l 419 (421)
T PRK09792 395 IRFLYPLTIPDAQFDAAMK-ILQDAL 419 (421)
T ss_pred EEEeCCCcCCHHHHHHHHH-HHHHHH
Confidence 9999999999999999888 776543
No 209
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]
Probab=64.78 E-value=45 Score=30.38 Aligned_cols=85 Identities=11% Similarity=0.016 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhC--CCcccCCCCCCeEEEEcCCchHHHhcc---ccccCCCCCCCCceEEEEeeCCCCHHH
Q psy5049 47 IRRISVLAHNTRYFRRKLNRL--GLIVYGHRDSPVVPVLVFFFSKVGQTS---IGLGVEQTALNDGLSLYESSHLRSANL 121 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~--G~~~~~~s~SPIiPV~~g~~~~~~~~a---~~i~~PtVP~g~~RlRI~lsA~HT~ed 121 (153)
.+.-++.++.+.|+.++|++. |+.+....----+.|-++. +.+..+. ..-.++--..+...+=||++-.+|++|
T Consensus 358 k~iA~r~~~~a~~la~~L~~~~~g~~~~~~~fFdt~~v~~~~-~~~~~l~~~~~~~G~~L~~~~~~~~~ia~tEt~t~~~ 436 (450)
T COG0403 358 KEIAERIHRLAAYLAAGLKEIGAGVELVFDHFFDTFTVRVPE-EVAEALLAAAIAGGINLRRVDADTVLIALTETTTKED 436 (450)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCceEeccccceeeEEEecch-hHHHHHHHHHHhcCCceeeecCCceEEEeecccCHHH
Confidence 566778889999999999944 4665321111122333332 3233222 222333333334488899999999999
Q ss_pred HHHHHHHHHHHH
Q psy5049 122 WNRPHSPSLMAV 133 (153)
Q Consensus 122 Id~L~~~~L~~~ 133 (153)
|+.+++ ++...
T Consensus 437 i~~l~~-~~~~~ 447 (450)
T COG0403 437 IDALVA-AFGGV 447 (450)
T ss_pred HHHHHH-HHhhh
Confidence 999998 66544
No 210
>PRK07582 cystathionine gamma-lyase; Validated
Probab=64.77 E-value=55 Score=28.07 Aligned_cols=87 Identities=14% Similarity=0.017 Sum_probs=56.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHhCCCc--cc--C---C-----------CCCCeEEEEcCCchHHHhcc------------
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRLGLI--VY--G---H-----------RDSPVVPVLVFFFSKVGQTS------------ 94 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~G~~--~~--~---~-----------s~SPIiPV~~g~~~~~~~~a------------ 94 (153)
.-+.+.++-.+|+..+.+.|.+..-. +. + + +.+.++.+-+.+.+.+.++.
T Consensus 242 tl~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~~~~~~~~~~~~l~~~~~~~s~ 321 (366)
T PRK07582 242 TLGLRFARQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELADAAAAERFVAASRLVVAATSF 321 (366)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeCCHHHHHHHHHhCCcceecccC
Confidence 34666689999999999999866421 10 1 1 13558899998766665543
Q ss_pred ----ccccCCCC---CCCCceEEEEeeCCCCHHHHHHHHHHHHHH
Q psy5049 95 ----IGLGVEQT---ALNDGLSLYESSHLRSANLWNRPHSPSLMA 132 (153)
Q Consensus 95 ----~~i~~PtV---P~g~~RlRI~lsA~HT~edId~L~~~~L~~ 132 (153)
..+..+.- ....+.+|+++.-.+.++.|+.+.. +|+.
T Consensus 322 G~~~sl~~~~~~~~~~~~~~liR~svGlE~~~dli~dl~~-al~~ 365 (366)
T PRK07582 322 GGVHTSADRRARWGDAVPEGFVRLSCGIEDTDDLVADLER-ALDA 365 (366)
T ss_pred CCccchhhhHHHcCCCCCCCeEEEEeccCCHHHHHHHHHH-HHhh
Confidence 11111110 0124789999999999888888877 6653
No 211
>PRK08361 aspartate aminotransferase; Provisional
Probab=64.16 E-value=76 Score=26.95 Aligned_cols=81 Identities=7% Similarity=-0.002 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCC-eEEEEcC----CchHHHh-cc----ccccCCCC---CCCCceEEEE
Q psy5049 47 IRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSP-VVPVLVF----FFSKVGQ-TS----IGLGVEQT---ALNDGLSLYE 112 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SP-IiPV~~g----~~~~~~~-~a----~~i~~PtV---P~g~~RlRI~ 112 (153)
.+.++.++++...+.+.|++. |+.+.. ++.. .+-+-+. +...... +. +.+. |.. +.+..-+||+
T Consensus 292 ~~~~~~~~~~~~~~~~~L~~~~~~~~~~-p~g~~~~~~~l~~~~~~~~~l~~~l~~~~gv~v~-pg~~f~~~~~~~iRi~ 369 (391)
T PRK08361 292 EEMRKEYNERRKLVLKRLKEMPHIKVFE-PKGAFYVFANIDETGMSSEDFAEWLLEKARVVVI-PGTAFGKAGEGYIRIS 369 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCeecC-CCEEEEEEEECCCCCCCHHHHHHHHHHhCCEEEc-CchhhCCCCCCEEEEE
Confidence 466788889999999999886 654432 3322 2222222 2222222 11 2222 322 2345789999
Q ss_pred eeCCCCHHHHHHHHHHHHHH
Q psy5049 113 SSHLRSANLWNRPHSPSLMA 132 (153)
Q Consensus 113 lsA~HT~edId~L~~~~L~~ 132 (153)
++. ++++++..++ .+..
T Consensus 370 ~~~--~~~~l~~al~-~l~~ 386 (391)
T PRK08361 370 YAT--SKEKLIEAME-RMEK 386 (391)
T ss_pred ecC--CHHHHHHHHH-HHHH
Confidence 984 6777777665 4443
No 212
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=64.16 E-value=87 Score=26.34 Aligned_cols=80 Identities=10% Similarity=0.082 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcCCchHHHhcc--------ccccCCCCCCCCceEEEEeeCCC
Q psy5049 47 IRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVFFFSKVGQTS--------IGLGVEQTALNDGLSLYESSHLR 117 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g~~~~~~~~a--------~~i~~PtVP~g~~RlRI~lsA~H 117 (153)
.+.++.+.++..++.+.|++. |+.+. .+..+-+-+-+.+.....+.. .+..|+ +.+..-+||++.
T Consensus 264 ~~~~~~~~~~r~~l~~~L~~~~~~~~~-~~~g~f~~~~~~~~~~~~~~l~~~gI~v~~~~~f~--~~~~~~iRls~~--- 337 (354)
T PRK06358 264 KKTIQWIKEEKDFLYNGLSEFKGIKVY-KPSVNFIFFKLEKPIDLRKELLKKGILIRSCSNYR--GLDENYYRVAVK--- 337 (354)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcEEc-CCcceEEEEEcCchHHHHHHHHHCCeEEEECCCCC--CCCCCEEEEEeC---
Confidence 456777888888999999876 55443 344453323332333222222 222343 224567999975
Q ss_pred CHHHHHHHHHHHHHHH
Q psy5049 118 SANLWNRPHSPSLMAV 133 (153)
Q Consensus 118 T~edId~L~~~~L~~~ 133 (153)
++++.+++++ +|+.+
T Consensus 338 ~~~~~~~l~~-~l~~~ 352 (354)
T PRK06358 338 SREDNKKLLK-ALEVI 352 (354)
T ss_pred CHHHHHHHHH-HHHHH
Confidence 4688888888 77654
No 213
>PRK07046 aminotransferase; Validated
Probab=64.13 E-value=39 Score=30.18 Aligned_cols=83 Identities=12% Similarity=-0.070 Sum_probs=46.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHh----CCCcccCCCCCCeEEEEcCCc--------------hHHHhcc-----ccc-cCC
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNR----LGLIVYGHRDSPVVPVLVFFF--------------SKVGQTS-----IGL-GVE 100 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~----~G~~~~~~s~SPIiPV~~g~~--------------~~~~~~a-----~~i-~~P 100 (153)
..++..+++++...+|++.|++ .++.....+...++-+.+.++ +....+. ..+ ..|
T Consensus 342 ~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~ 421 (453)
T PRK07046 342 MTEAAYAHMLALAARLAAGLRAVIARHGLPWHVTRVGARVEFQFAPTPPRNGAEAAAALDPELEAALHLYLLNRGVLITP 421 (453)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCcEEEEEEeCCCCCCHHHHhcccCHHHHHHHHHHHHHCCCEEec
Confidence 4556799999999999999974 343211112223444544221 1111121 222 333
Q ss_pred CCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049 101 QTALNDGLSLYESSHLRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 101 tVP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~ 134 (153)
. + ..++++ ..||++|||++++ +++...
T Consensus 422 ~---~-~~~~~~--p~~t~~did~~~~-~~~~~l 448 (453)
T PRK07046 422 F---H-NMMLVC--PATTAADVDRLVA-AFDACL 448 (453)
T ss_pred c---c-CcEEEe--CCCCHHHHHHHHH-HHHHHH
Confidence 2 2 345554 4699999999998 776544
No 214
>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=63.35 E-value=56 Score=29.17 Aligned_cols=88 Identities=8% Similarity=-0.076 Sum_probs=52.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHhC----CCcccCCCCCCeEEEEcCCc--------------hHHHhcc------ccccCC
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRL----GLIVYGHRDSPVVPVLVFFF--------------SKVGQTS------IGLGVE 100 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~----G~~~~~~s~SPIiPV~~g~~--------------~~~~~~a------~~i~~P 100 (153)
+.+...+++.+.-.+|++.|+++ ++.....+....+.|-+.++ ..+..+. -.+..|
T Consensus 341 ~~~~l~~~~~~~G~~l~~~L~~l~~~~~~i~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~ 420 (459)
T PRK06931 341 KEENLAQNAAERGEWLKAQLAELQKRYPCIGNVRGRGLMIGIEIVDERQPADAMGSYPADGELAAAIQKACFENGLLLER 420 (459)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHhCCCeEeEecCceEEEEEEccCcccccccccCCccHHHHHHHHHHHHHCCcEEee
Confidence 44567888889999999999754 22110112234555555321 1111221 222334
Q ss_pred CCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049 101 QTALNDGLSLYESSHLRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 101 tVP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~ 134 (153)
. ..+...+|+..+..||++|||.+++ +++...
T Consensus 421 ~-~~~~~~l~~~Ppl~it~~eid~~~~-~l~~~l 452 (459)
T PRK06931 421 G-GRNGNVVRLLPPLLITQAECEEFID-RFEQAL 452 (459)
T ss_pred c-CCCCCEEEEECCCCcCHHHHHHHHH-HHHHHH
Confidence 3 2234679999999999999999988 776544
No 215
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=63.13 E-value=11 Score=31.54 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=20.7
Q ss_pred HHHHHHHhHHHHHHHhhhcccEEe
Q psy5049 3 LISVLAQNTRYFRRKLNRLGLILY 26 (153)
Q Consensus 3 ~~~~~~~~~~~~~~~l~~~g~~~~ 26 (153)
..+++.++++||+++|++.||..+
T Consensus 289 ~~~~~~~~~~~l~~~L~~~g~~~~ 312 (373)
T TIGR03812 289 IVAECMENTRYLVEELKKIGFEPV 312 (373)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEE
Confidence 467889999999999999999753
No 216
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=63.10 E-value=16 Score=32.32 Aligned_cols=26 Identities=15% Similarity=0.088 Sum_probs=22.6
Q ss_pred HHHHHHhHHHHHHHhhhcccEEeecC
Q psy5049 4 ISVLAQNTRYFRRKLNRLGLILYVLF 29 (153)
Q Consensus 4 ~~~~~~~~~~~~~~l~~~g~~~~~~~ 29 (153)
.+++.+|++||+++|++.||.+++..
T Consensus 305 ~~~i~~l~~~l~~~L~~~g~~v~~~~ 330 (452)
T PTZ00094 305 AKQVLKNAKALAAALEKRGYDLVTGG 330 (452)
T ss_pred HHHHHHHHHHHHHHHHhCCcEEecCC
Confidence 46788999999999999999998743
No 217
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=62.94 E-value=49 Score=29.21 Aligned_cols=87 Identities=2% Similarity=-0.123 Sum_probs=48.0
Q ss_pred chHHHHHHHHHHHHHHHHHHhC--CCcccC--CCCCCeEEEEcC-C-------chHHHhcc------ccccCCCCCCCCc
Q psy5049 46 GIRRISVLAHNTRYFRRKLNRL--GLIVYG--HRDSPVVPVLVF-F-------FSKVGQTS------IGLGVEQTALNDG 107 (153)
Q Consensus 46 ~~~rr~~L~~ni~~fr~~L~~~--G~~~~~--~s~SPIiPV~~g-~-------~~~~~~~a------~~i~~PtVP~g~~ 107 (153)
.++..+++.+.-.++++.|++. ++...+ .+...++-+.+- + ...+..+. ..+..|.-.. ..
T Consensus 337 ~~~~~~~~~~~g~~l~~~l~~l~~~~~~~~~vrg~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gvlv~~~~~~-~~ 415 (451)
T PRK06918 337 KENLNDRAIELGKVVMNRFEEMKNKYNCIGDVRGLGAMCAFELVQDRKTKEPDKTLTANICKEANKRGLLLLSAGTY-GN 415 (451)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHhhCCCceeeccceeEEEEEEccCCCcCCCcHHHHHHHHHHHHHCCeEEeecCCC-CC
Confidence 4556677777777888877643 221110 122334343331 1 11122222 2223443111 26
Q ss_pred eEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049 108 LSLYESSHLRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 108 RlRI~lsA~HT~edId~L~~~~L~~~~ 134 (153)
.+|++.+..+|+++|+..++ .++...
T Consensus 416 ~lrl~p~l~~t~~~id~~l~-~l~~~l 441 (451)
T PRK06918 416 VIRVLMPLVITDEQLEEGLT-IIEESL 441 (451)
T ss_pred EEEEECCCccCHHHHHHHHH-HHHHHH
Confidence 79999999999999999888 766544
No 218
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=62.87 E-value=33 Score=30.63 Aligned_cols=83 Identities=11% Similarity=0.011 Sum_probs=52.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHhCCCccc-CCCCCCeEEEEcCCc----hHHHhcc---------ccccCCCCCCCCceEE
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRLGLIVY-GHRDSPVVPVLVFFF----SKVGQTS---------IGLGVEQTALNDGLSL 110 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~G~~~~-~~s~SPIiPV~~g~~----~~~~~~a---------~~i~~PtVP~g~~RlR 110 (153)
++.+..++.-+|++.|.+.|.+.|+.+. +.++++.+=|=+... ..+.... ..+-+-.-|...+.+|
T Consensus 297 ~fk~Ya~qVv~NAk~La~~L~~~G~~v~~ggTd~H~vlvd~~~~~~~g~~a~~~Le~~gI~vnkn~iP~d~~~~~~sGlR 376 (399)
T PF00464_consen 297 EFKEYAKQVVKNAKALAEALQERGFKVVTGGTDNHQVLVDLRSFGIDGKEAEKALEEAGIIVNKNTIPGDRSPFVPSGLR 376 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-EEGGGS-SSSEEEEEGGGGTS-HHHHHHHHHHTTEE-EEE--TTTSTTTT-SEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcEEEECCCCCCeEEEEecccccchHHHHHHHHhcCeeecccccCCCCCCCCCCEEE
Confidence 5678999999999999999999999764 457889877766432 2222222 2222222244457899
Q ss_pred EEee----CCCCHHHHHHHHH
Q psy5049 111 YESS----HLRSANLWNRPHS 127 (153)
Q Consensus 111 I~ls----A~HT~edId~L~~ 127 (153)
|... -...++|+..+.+
T Consensus 377 lGT~~lT~rG~~e~dm~~iA~ 397 (399)
T PF00464_consen 377 LGTPALTRRGMKEEDMKEIAE 397 (399)
T ss_dssp EESHHHHHTT--HHHHHHHHH
T ss_pred ECCHHHHhCCCCHHHHHHHHh
Confidence 9865 4677888888765
No 219
>PRK07337 aminotransferase; Validated
Probab=62.78 E-value=90 Score=26.43 Aligned_cols=78 Identities=12% Similarity=-0.026 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCccc-CCCCCCeEEEEcC--------CchH-HHhcc----ccc----cCCCCCCCCce
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVY-GHRDSPVVPVLVF--------FFSK-VGQTS----IGL----GVEQTALNDGL 108 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~-~~s~SPIiPV~~g--------~~~~-~~~~a----~~i----~~PtVP~g~~R 108 (153)
.+.++.+.++..++.+.|++.|+.+. ..+.+.-+=+-+. +... +..+. ..+ .| ..+.+..-
T Consensus 286 ~~~~~~~~~~r~~~~~~L~~~~~~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f-~~~~~~~~ 364 (388)
T PRK07337 286 ERRRAEFKRRRDFIVPALESLGFKVPVMPDGAFYVYADCRGVAHPAAGDSAALTQAMLHDAGVVLVPGRDF-GPHAPRDY 364 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccCCCeeEEEEEecccccCCCCCCHHHHHHHHHHhCCEEEeCchhh-CCCCCCCE
Confidence 45677888888999999998886531 1222222222221 2222 21211 111 22 22334578
Q ss_pred EEEEeeCCCCHHHHHHHHH
Q psy5049 109 SLYESSHLRSANLWNRPHS 127 (153)
Q Consensus 109 lRI~lsA~HT~edId~L~~ 127 (153)
+||+++. +++++...++
T Consensus 365 ~Ri~~~~--~~~~l~~~l~ 381 (388)
T PRK07337 365 IRLSYAT--SMSRLEEAVA 381 (388)
T ss_pred EEEEecC--CHHHHHHHHH
Confidence 9999986 5777777444
No 220
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=62.31 E-value=99 Score=26.35 Aligned_cols=85 Identities=12% Similarity=-0.072 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcC--------CchHH-Hhcc----ccccCCCCCCCCceEEEE
Q psy5049 47 IRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVF--------FFSKV-GQTS----IGLGVEQTALNDGLSLYE 112 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g--------~~~~~-~~~a----~~i~~PtVP~g~~RlRI~ 112 (153)
.+.+++++++..++.+.|.+. |+.....+.+.-+-+-+. ++... ..+. +.+.+-..-....-+||+
T Consensus 299 ~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~iRis 378 (401)
T TIGR01264 299 DGTLSVLESNAMLCYGALAAVPGLRPVMPSGAMYMMVGIEMEHFPEFKNDVEFTERLVAEQSVFCLPGSCFEYPGFFRVV 378 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeeEEEEEecccccCCCCCHHHHHHHHHHhCCEEEeCchhcCCCCeEEEE
Confidence 456778888888999999887 554322222332222221 11222 1211 222221111124689999
Q ss_pred eeCCCCHHHHHHHHHHHHHHHH
Q psy5049 113 SSHLRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 113 lsA~HT~edId~L~~~~L~~~~ 134 (153)
++. ++++++..++ .|..+.
T Consensus 379 ~~~--~~~~l~~~l~-rl~~~~ 397 (401)
T TIGR01264 379 LTV--PVVMMEEACS-RIQEFC 397 (401)
T ss_pred EcC--CHHHHHHHHH-HHHHHH
Confidence 985 5788888776 555443
No 221
>PRK08363 alanine aminotransferase; Validated
Probab=61.64 E-value=84 Score=26.76 Aligned_cols=82 Identities=11% Similarity=0.086 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEE-EcC-----CchH-HHhcc--------ccccCCCCCCCCceEE
Q psy5049 47 IRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPV-LVF-----FFSK-VGQTS--------IGLGVEQTALNDGLSL 110 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV-~~g-----~~~~-~~~~a--------~~i~~PtVP~g~~RlR 110 (153)
.+.++++.++..++.+.|.+. |+.+. .+....+-+ .+. ++.. +.... .+..|+ +.+..-+|
T Consensus 295 ~~~~~~~~~~~~~l~~~L~~~~~~~~~-~p~g~~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~g~~f~--~~~~~~iR 371 (398)
T PRK08363 295 EEYMKKLKERRDYIYKRLNEIPGISTT-KPQGAFYIFPRIEEGPWKDDKEFVLDVLHEAHVLFVHGSGFG--EYGAGHFR 371 (398)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCEec-CCCeEEEEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhC--CCCCCeEE
Confidence 456788889999999999876 54432 233333322 221 2222 22221 222333 23456799
Q ss_pred EEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049 111 YESSHLRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 111 I~lsA~HT~edId~L~~~~L~~~~ 134 (153)
|++. .++++++..++ .|..+.
T Consensus 372 is~~--~~~~~l~~~l~-~l~~~~ 392 (398)
T PRK08363 372 LVFL--PPVEILEEAMD-RFEEFM 392 (398)
T ss_pred EEec--CCHHHHHHHHH-HHHHHH
Confidence 9994 57899888777 665443
No 222
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=61.25 E-value=78 Score=28.59 Aligned_cols=92 Identities=14% Similarity=0.030 Sum_probs=62.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHhCCCccc-CCCCCCeEEEEcCCc----hHHHhcc-----------ccccCCCCCCCCce
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRLGLIVY-GHRDSPVVPVLVFFF----SKVGQTS-----------IGLGVEQTALNDGL 108 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~G~~~~-~~s~SPIiPV~~g~~----~~~~~~a-----------~~i~~PtVP~g~~R 108 (153)
+..+..++.-+|++.+.+.|.+.|+.+. |.++++.+-|=+.+. ..+.... .+.-+.. |..++.
T Consensus 281 ~fk~Ya~qVv~NAkaLAe~l~~~G~~vvsGgTdnHl~lVDl~~~~~~Gk~ae~~L~~~~It~NKN~iP~D~~~-p~~tSG 359 (413)
T COG0112 281 EFKEYAKQVVKNAKALAEALKERGFKVVSGGTDNHLVLVDLRSKGLTGKKAEAALERAGITVNKNAIPFDPES-PFVTSG 359 (413)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCeEecCCccceEEEEEcccCCCCHHHHHHHHHHcCEeeccCCCCCCCCC-CCCCcc
Confidence 3378889999999999999999999764 457788777766521 2222222 3333333 666788
Q ss_pred EEEEee----CCCCHHHHHHHHHHHHHHHHhcCC
Q psy5049 109 SLYESS----HLRSANLWNRPHSPSLMAVFRGGG 138 (153)
Q Consensus 109 lRI~ls----A~HT~edId~L~~~~L~~~~~~~~ 138 (153)
+||-.- -...++|+..+.+ .+..+....+
T Consensus 360 IRiGtpa~TtrG~~e~e~~~Ia~-~I~~vl~~~~ 392 (413)
T COG0112 360 IRIGTPAVTTRGFGEAEMEEIAD-LIADVLDGLK 392 (413)
T ss_pred ceeccHHHhhcCCCHHHHHHHHH-HHHHHHhccc
Confidence 999754 4677889998887 6666555433
No 223
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=61.24 E-value=86 Score=26.56 Aligned_cols=87 Identities=14% Similarity=-0.043 Sum_probs=51.0
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCC-cccCCC----C-CCeEEEEcCC-----chHHHhcc----ccc--cCCCCC-----
Q psy5049 46 GIRRISVLAHNTRYFRRKLNRLGL-IVYGHR----D-SPVVPVLVFF-----FSKVGQTS----IGL--GVEQTA----- 103 (153)
Q Consensus 46 ~~~rr~~L~~ni~~fr~~L~~~G~-~~~~~s----~-SPIiPV~~g~-----~~~~~~~a----~~i--~~PtVP----- 103 (153)
-++..++-++|..++++.|.+.+. ...... . ..+.||.+.. .++..+.. +.+ .|+.+.
T Consensus 257 l~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~r~~l~~~L~~~gI~~~~~~~~~~~~~~~ 336 (380)
T TIGR03588 257 LDRFVAKRREIAARYDRLLKDLPYFTPLTIPLGSKSAWHLYPILLDQEFGCTRKEVFEALRAAGIGVQVHYIPVHLQPYY 336 (380)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCEeEEEEEEEEECCcCCCCHHHHHHHHHHCCCCcccCCcccccChhh
Confidence 466777778999999999987653 211111 1 1355665542 23333222 111 121111
Q ss_pred -----C---------CCceEEEEeeCCCCHHHHHHHHHHHHHHH
Q psy5049 104 -----L---------NDGLSLYESSHLRSANLWNRPHSPSLMAV 133 (153)
Q Consensus 104 -----~---------g~~RlRI~lsA~HT~edId~L~~~~L~~~ 133 (153)
. ....+++-++...|++|++++++ +++.+
T Consensus 337 ~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~dv~~i~~-~l~~~ 379 (380)
T TIGR03588 337 RQGFGDGDLPSAENFYLAEISLPLHPALTLEQQQRVVE-TLRKV 379 (380)
T ss_pred hccCCcCCCcHHHHHHhceEEcCCCCCCCHHHHHHHHH-HHHHh
Confidence 0 11458889999999999999988 76653
No 224
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=61.21 E-value=1.1e+02 Score=26.30 Aligned_cols=84 Identities=12% Similarity=-0.009 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcC--------CchHH-Hhcc----ccccCCCCCCCCceEEEE
Q psy5049 47 IRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVF--------FFSKV-GQTS----IGLGVEQTALNDGLSLYE 112 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g--------~~~~~-~~~a----~~i~~PtVP~g~~RlRI~ 112 (153)
.+.+++++++..++.+.|+.. |+.....+.+.-+-+-+. +.... ..+. ..+.+-..--...-+||+
T Consensus 301 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~iRis 380 (403)
T TIGR01265 301 DGKISVLKSNAELCYEELKDIPGLVCPKPEGAMYLMVKLELELFPEIKDDVDFCEKLVREESVICLPGSAFGLPNWVRIT 380 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCceecCCCceeEEEEeccccccCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEE
Confidence 456788888989999999876 554322233444333332 12222 1211 222211111124679999
Q ss_pred eeCCCCHHHHHHHHHHHHHHH
Q psy5049 113 SSHLRSANLWNRPHSPSLMAV 133 (153)
Q Consensus 113 lsA~HT~edId~L~~~~L~~~ 133 (153)
++. .++.++..++ .+..+
T Consensus 381 ~~~--~~~~l~~~l~-~l~~~ 398 (403)
T TIGR01265 381 ITV--PESMLEEACS-RIKEF 398 (403)
T ss_pred ecC--CHHHHHHHHH-HHHHH
Confidence 984 5777777666 55443
No 225
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=60.93 E-value=1e+02 Score=26.14 Aligned_cols=81 Identities=6% Similarity=-0.166 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcC-CchHHHh-cc--------ccccCC----CCCCCCceEEEE
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVF-FFSKVGQ-TS--------IGLGVE----QTALNDGLSLYE 112 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g-~~~~~~~-~a--------~~i~~P----tVP~g~~RlRI~ 112 (153)
.+.++.++++...+.+.|++. +.+...+.+.-+-+-+. +..+... +. .+..|- ..+.+...+||+
T Consensus 296 ~~~~~~~~~~~~~~~~~L~~~-~~~~~p~gg~f~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris 374 (393)
T TIGR03538 296 RENRALYREKFAAVLEILGQV-LDLELPDAGFYLWPKVPGDDEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIA 374 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-CcccCCCeeEEEEEECCCCHHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEE
Confidence 455777888888888888764 32211222333333332 2222221 11 222221 124456789999
Q ss_pred eeCCCCHHHHHHHHHHHHH
Q psy5049 113 SSHLRSANLWNRPHSPSLM 131 (153)
Q Consensus 113 lsA~HT~edId~L~~~~L~ 131 (153)
++. ++++++..++ .|.
T Consensus 375 ~~~--~~~~l~~~l~-~l~ 390 (393)
T TIGR03538 375 LVA--PLEECVEAAE-RIR 390 (393)
T ss_pred ecC--CHHHHHHHHH-HHH
Confidence 976 5788888666 443
No 226
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=60.32 E-value=17 Score=31.10 Aligned_cols=25 Identities=12% Similarity=0.207 Sum_probs=22.0
Q ss_pred HHHHHHHhHHHHHHHhhhcccEEee
Q psy5049 3 LISVLAQNTRYFRRKLNRLGLILYV 27 (153)
Q Consensus 3 ~~~~~~~~~~~~~~~l~~~g~~~~~ 27 (153)
.++++.+|+++|+++|++.||.++.
T Consensus 284 ~~~~~~~~~~~l~~~L~~~g~~~~~ 308 (416)
T PRK00011 284 YAQQVVKNAKALAEALAERGFRVVS 308 (416)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeeee
Confidence 4678899999999999999998864
No 227
>PTZ00376 aspartate aminotransferase; Provisional
Probab=60.19 E-value=1e+02 Score=26.40 Aligned_cols=77 Identities=8% Similarity=-0.069 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcc---cCCCCCCeEEEEcCCch-HHHhcc---ccccCCCCCCCCceEEEEeeCCCCHHH
Q psy5049 49 RISVLAHNTRYFRRKLNRLGLIV---YGHRDSPVVPVLVFFFS-KVGQTS---IGLGVEQTALNDGLSLYESSHLRSANL 121 (153)
Q Consensus 49 rr~~L~~ni~~fr~~L~~~G~~~---~~~s~SPIiPV~~g~~~-~~~~~a---~~i~~PtVP~g~~RlRI~lsA~HT~ed 121 (153)
.+++++++-..+.+.|.+.|+.. ...+.. =+.+++.-+. .+..+. .....|. | ||++++ .++++
T Consensus 319 ~~~~~~~~r~~l~~~L~~~~~~~~~~~~~p~g-g~f~~~~~~~~~~~~L~~~~~v~v~p~---~----Ris~~~-~~~~~ 389 (404)
T PTZ00376 319 MSGRIQNMRQLLYDELKALGSPGDWEHIINQI-GMFSFTGLTKEQVERLIEKYHIYLLDN---G----RISVAG-LTSKN 389 (404)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcccccccCc-eEEEecCCCHHHHHHHHHhCCEeecCC---C----eEEEec-cCHHh
Confidence 35678889999999998876431 001222 2334443333 233332 2223333 2 999966 99999
Q ss_pred HHHHHHHHHHHHHh
Q psy5049 122 WNRPHSPSLMAVFR 135 (153)
Q Consensus 122 Id~L~~~~L~~~~~ 135 (153)
++.+++ .++.+.+
T Consensus 390 ~~~~~~-~l~~~~~ 402 (404)
T PTZ00376 390 VDYVAE-AIHDVVR 402 (404)
T ss_pred HHHHHH-HHHHHHh
Confidence 999998 7776543
No 228
>PRK09148 aminotransferase; Validated
Probab=59.62 E-value=90 Score=26.84 Aligned_cols=81 Identities=9% Similarity=-0.007 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCC------chHHH-hcc--------ccccCCCCCCCCceEEE
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFF------FSKVG-QTS--------IGLGVEQTALNDGLSLY 111 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~------~~~~~-~~a--------~~i~~PtVP~g~~RlRI 111 (153)
++.++.+.++-.++.+.|++.|+.+...+.+.-+-+-+.+ ..+.. .+. .+..|+ +.+...+||
T Consensus 291 ~~~~~~~~~~r~~l~~~L~~~~~~~~~p~~g~f~~~~l~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~--~~~~~~~Ri 368 (405)
T PRK09148 291 AEMRELYKKRRDVLVESFGRAGWDIPPPAASMFAWAPIPEAFRHLGSLEFSKLLVEKADVAVAPGVGFG--EHGDGYVRI 368 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccCCCCeeEEEEEECCCccCCCCHHHHHHHHHHhCCEEEeCchhhC--CCCCCeEEE
Confidence 4567888999999999999888754222222222222221 11111 111 222333 223568999
Q ss_pred EeeCCCCHHHHHHHHHHHHHH
Q psy5049 112 ESSHLRSANLWNRPHSPSLMA 132 (153)
Q Consensus 112 ~lsA~HT~edId~L~~~~L~~ 132 (153)
++. .+.+++...++ .+..
T Consensus 369 ~~~--~~~~~l~~al~-~l~~ 386 (405)
T PRK09148 369 ALV--ENEQRIRQAAR-NIKR 386 (405)
T ss_pred Eec--CCHHHHHHHHH-HHHH
Confidence 996 57888777665 4443
No 229
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=59.59 E-value=44 Score=30.27 Aligned_cols=82 Identities=11% Similarity=0.013 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHH----hCCCcccCCCCCCeEEEEcCCch-----HH--------Hhcc-----ccc-cCCCCCCC
Q psy5049 49 RISVLAHNTRYFRRKLN----RLGLIVYGHRDSPVVPVLVFFFS-----KV--------GQTS-----IGL-GVEQTALN 105 (153)
Q Consensus 49 rr~~L~~ni~~fr~~L~----~~G~~~~~~s~SPIiPV~~g~~~-----~~--------~~~a-----~~i-~~PtVP~g 105 (153)
.-++|.+....+++.|+ +.|+......-...+.|++.+.. .+ ..+. ..| ..|. +
T Consensus 324 ~y~~l~~~~~~L~~gl~~~~~~~g~~~~v~~~gsm~~i~F~~~~~~n~~da~~sd~~~~~~~~~~~l~~GV~l~ps-~-- 400 (432)
T COG0001 324 VYERLDALGERLAEGLRAAAERHGIPLTVNRVGSMFGIFFTEEGVRNYADAKRSDVERFAKFFHHLLNRGVYLAPS-Q-- 400 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeecceEEEEecCCCCCCHHHHHhhchHHHHHHHHHHHhCCcccCCc-c--
Confidence 56778888888887776 55665433344456777776631 11 1111 333 4444 1
Q ss_pred CceEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Q psy5049 106 DGLSLYESSHLRSANLWNRPHSPSLMAVFRG 136 (153)
Q Consensus 106 ~~RlRI~lsA~HT~edId~L~~~~L~~~~~~ 136 (153)
-=...+|..||+||||+.++ +++.+.+.
T Consensus 401 --~ea~flS~ahte~di~~~~~-a~~~~~~~ 428 (432)
T COG0001 401 --FEAGFLSTAHTEEDIDRTLE-AADEAFKE 428 (432)
T ss_pred --ccceeeecccCHHHHHHHHH-HHHHHHHH
Confidence 11368999999999999988 66655543
No 230
>PRK06107 aspartate aminotransferase; Provisional
Probab=59.55 E-value=94 Score=26.59 Aligned_cols=82 Identities=15% Similarity=0.067 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCe-EEEEcC--------------CchH-HHhcc----ccccCCCCCCC
Q psy5049 47 IRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPV-VPVLVF--------------FFSK-VGQTS----IGLGVEQTALN 105 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPI-iPV~~g--------------~~~~-~~~~a----~~i~~PtVP~g 105 (153)
.+.++.+.++..++.+.|++. |+.+.. +++-. +-+-+. ++.. +..+. ..++ |.-.-|
T Consensus 294 ~~~~~~~~~~~~~~~~~L~~~~g~~~~~-p~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~-pg~~Fg 371 (402)
T PRK06107 294 TESVAVYKQRRDYALALLNAIPGLSCLV-PDGAFYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVV-QGTAYG 371 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcccC-CCcceEEeeecccccccccccccCCCCHHHHHHHHHHhCCEEEe-CccccC
Confidence 455778889999999999875 554422 22222 111110 1122 21222 2222 221111
Q ss_pred -CceEEEEeeCCCCHHHHHHHHHHHHHHH
Q psy5049 106 -DGLSLYESSHLRSANLWNRPHSPSLMAV 133 (153)
Q Consensus 106 -~~RlRI~lsA~HT~edId~L~~~~L~~~ 133 (153)
..-+||++.. ++|+++..++ .|...
T Consensus 372 ~~~~iRis~~~--~~e~l~~~l~-~l~~~ 397 (402)
T PRK06107 372 LSPYFRLSIAT--SLETLEEACA-RIERA 397 (402)
T ss_pred CCCeEEEEeCC--CHHHHHHHHH-HHHHH
Confidence 3689999994 7999999777 55543
No 231
>PRK08064 cystathionine beta-lyase; Provisional
Probab=59.10 E-value=63 Score=27.99 Aligned_cols=87 Identities=14% Similarity=-0.027 Sum_probs=59.2
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCC---------cc------c---CCCCCCeEEEEcCCchHHHhcc-------------
Q psy5049 46 GIRRISVLAHNTRYFRRKLNRLGL---------IV------Y---GHRDSPVVPVLVFFFSKVGQTS------------- 94 (153)
Q Consensus 46 ~~~rr~~L~~ni~~fr~~L~~~G~---------~~------~---~~s~SPIiPV~~g~~~~~~~~a------------- 94 (153)
-+.|.++..+|+..+.+.|.+.+- .. . ..+..+++++.+.+.+.+..+.
T Consensus 249 l~~R~~~~~~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~~~~~~~~f~~~l~l~~~~~s~G 328 (390)
T PRK08064 249 LHVRLEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQSEEAVRQFVSHVKLPVFAVSLG 328 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEECCHHHHHHHHHhCCcceEcccCC
Confidence 368889999999999999986641 10 0 0134669999997655555543
Q ss_pred ---ccccCCCC------C------C--CCceEEEEeeCCCCHHHHHHHHHHHHHHH
Q psy5049 95 ---IGLGVEQT------A------L--NDGLSLYESSHLRSANLWNRPHSPSLMAV 133 (153)
Q Consensus 95 ---~~i~~PtV------P------~--g~~RlRI~lsA~HT~edId~L~~~~L~~~ 133 (153)
..+.+|+. | . ..+.+|+|+.-.++++.|+.+.. +|+.+
T Consensus 329 ~~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~SvGle~~~dli~dl~~-Al~~~ 383 (390)
T PRK08064 329 AVESILSYPAKMSHAAMPKEERDERGITDGLLRLSVGLENVDDLIADFEQ-ALSYV 383 (390)
T ss_pred CCcceeECCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHH-HHHhc
Confidence 12233321 1 1 25789999999999999999988 88764
No 232
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=58.85 E-value=74 Score=29.18 Aligned_cols=44 Identities=9% Similarity=0.011 Sum_probs=32.8
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEc
Q psy5049 41 ICFISGIRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLV 84 (153)
Q Consensus 41 l~~~~~~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~ 84 (153)
+......+..++..++++||.+.|.+. +|.+...+...|+.+-+
T Consensus 393 lG~~G~~~ii~~~~~la~~l~~~L~~~~~~el~~~p~l~iv~Fr~ 437 (522)
T TIGR03799 393 IGRKGYELLIDQSIEKAKYFADLIQQQPDFELVTEPELCLLTYRY 437 (522)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEecCCCccEEEEEE
Confidence 333456888889999999999999865 78776555567776664
No 233
>KOG1368|consensus
Probab=57.96 E-value=46 Score=29.40 Aligned_cols=118 Identities=10% Similarity=0.051 Sum_probs=68.5
Q ss_pred HHHHhHHHHHHHhhhcccEEeecCCCCCCCCcccc--cccccchHHHHHHHHHHHHHHHHHHhCC-Cccc-CCCCCCeEE
Q psy5049 6 VLAQNTRYFRRKLNRLGLILYVLFQAQTKPPRSHC--ICFISGIRRISVLAHNTRYFRRKLNRLG-LIVY-GHRDSPVVP 81 (153)
Q Consensus 6 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~~~--l~~~~~~~rr~~L~~ni~~fr~~L~~~G-~~~~-~~s~SPIiP 81 (153)
.|-..-++||+.|-+ |.--+|- |+-+ +..++.-....+-++.+..+.+.++..+ +.+. ...++.|+-
T Consensus 240 ~FI~kA~~~RKalGG-GmRQsGv--------LaaaaLval~~~~~~L~~dHk~A~~lAe~~~~~~~i~v~v~a~etNiv~ 310 (384)
T KOG1368|consen 240 DFIDKARHFRKALGG-GMRQSGV--------LAAAALVALDENVPLLRADHKRAKELAEYINTPEEIRVEVPAVETNIVN 310 (384)
T ss_pred HHHHHHHHHHHHhcC-chhHHHH--------HHHHHHHHhhcchHHHHHHHHHHHHHHHHhccccceeeecchhhcceee
Confidence 344556789988733 3333331 0111 3334444455556677777777777665 4332 225677877
Q ss_pred EEcCCch----HHHhcc--ccccCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHH-HHHh
Q psy5049 82 VLVFFFS----KVGQTS--IGLGVEQTALNDGLSLYESSHLRSANLWNRPHSPSLM-AVFR 135 (153)
Q Consensus 82 V~~g~~~----~~~~~a--~~i~~PtVP~g~~RlRI~lsA~HT~edId~L~~~~L~-~~~~ 135 (153)
+.+-.+. ...+.. ..|. .++....|+|++++..-|+++++++.+ ++. .+..
T Consensus 311 ~~l~q~~~~~~~l~~~~~k~gi~--lm~~~s~r~Rivlh~Qvt~~~ve~~~~-~~~k~~~~ 368 (384)
T KOG1368|consen 311 MVLCQARLTAEELCKFLEKNGIL--LMGGASRRIRIVLHHQVTDEDVEYVKS-VLSKKFLK 368 (384)
T ss_pred eecccccCCHHHHHHHHHHCCeE--EeeccccceEEEEEEecCHHHHHHHHH-HHHHHHHh
Confidence 6554433 222222 2221 123457899999999999999999999 884 4433
No 234
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=57.40 E-value=18 Score=32.58 Aligned_cols=26 Identities=15% Similarity=0.084 Sum_probs=23.3
Q ss_pred HHHHHHHhHHHHHHHhhhcccEEeec
Q psy5049 3 LISVLAQNTRYFRRKLNRLGLILYVL 28 (153)
Q Consensus 3 ~~~~~~~~~~~~~~~l~~~g~~~~~~ 28 (153)
..+++.+|+++|++.|.+.||.|++.
T Consensus 315 ~~~~~~~na~~L~~~L~~~G~~l~~~ 340 (475)
T PLN03226 315 YQKQVKANAAALANRLMSKGYKLVTG 340 (475)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEcC
Confidence 35788999999999999999999875
No 235
>PRK06348 aspartate aminotransferase; Provisional
Probab=56.46 E-value=1.1e+02 Score=25.90 Aligned_cols=79 Identities=5% Similarity=0.035 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeE-EEEcC----CchHHHhc-c--------ccccCCCCCCCCceEEE
Q psy5049 47 IRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVV-PVLVF----FFSKVGQT-S--------IGLGVEQTALNDGLSLY 111 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIi-PV~~g----~~~~~~~~-a--------~~i~~PtVP~g~~RlRI 111 (153)
++.++.++++..++.+.|... |+.+. .+++..+ -+-+. +....... . .+..|. +.+...+||
T Consensus 287 ~~~~~~~~~r~~~~~~~L~~~~~~~~~-~p~gg~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f~--~~~~~~iRi 363 (384)
T PRK06348 287 PLIKEEFQKRLEYAYKRIESIPNLSLH-PPKGSIYAFINIKKTGLSSVEFCEKLLKEAHVLVIPGKAFG--ESGEGYIRL 363 (384)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCceec-cCCeeEEEEEecccCCCCHHHHHHHHHHhCCEEEcCchhhc--cCCCCeEEE
Confidence 456777888888899999875 44332 2333322 22222 12222211 1 222332 234678999
Q ss_pred EeeCCCCHHHHHHHHHHHHH
Q psy5049 112 ESSHLRSANLWNRPHSPSLM 131 (153)
Q Consensus 112 ~lsA~HT~edId~L~~~~L~ 131 (153)
+++ .++++++..++ .+.
T Consensus 364 ~~~--~~~~~l~~al~-~l~ 380 (384)
T PRK06348 364 ACT--VGIEVLEEAFN-RIE 380 (384)
T ss_pred Eec--CCHHHHHHHHH-HHH
Confidence 995 58888888665 443
No 236
>PRK12566 glycine dehydrogenase; Provisional
Probab=55.13 E-value=88 Score=31.19 Aligned_cols=81 Identities=9% Similarity=-0.027 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcC-CchHHHhcc--ccccCCCCCCCCceEEEEeeCCCCHHHHHH
Q psy5049 48 RRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVF-FFSKVGQTS--IGLGVEQTALNDGLSLYESSHLRSANLWNR 124 (153)
Q Consensus 48 ~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g-~~~~~~~~a--~~i~~PtVP~g~~RlRI~lsA~HT~edId~ 124 (153)
+.-++.+.++.|+.+.|.+.|+.+....---=+.|-++ +..+..+.+ ..+..-.+ +...+.|++.-.+|.+|++.
T Consensus 356 ~ia~~~~~~a~~l~~~l~~~g~~~~~~~fF~~~~v~~~~~~~~~~~~a~~~~~n~r~~--~~~~~~~s~de~~~~~~~~~ 433 (954)
T PRK12566 356 RIAQRVHRLTAILAAGLEAKGIKRLNRHFFDTLTLEVGGAQAAIIESAEAARINLRIL--GRGRLGVSLDETCDEATVAR 433 (954)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccccCCccceEEEEccCCHHHHHHHHHHCCCeeEEe--CCCeEEEEeCCCCCHHHHHH
Confidence 34556788999999999999987632211122333344 233333333 33322222 24679999999999999999
Q ss_pred HHHHHHH
Q psy5049 125 PHSPSLM 131 (153)
Q Consensus 125 L~~~~L~ 131 (153)
++. ++.
T Consensus 434 ~~~-~f~ 439 (954)
T PRK12566 434 LFD-IFL 439 (954)
T ss_pred HHH-Hhc
Confidence 988 663
No 237
>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=54.50 E-value=1e+02 Score=27.63 Aligned_cols=88 Identities=8% Similarity=-0.084 Sum_probs=52.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHhC----CCcccCCCCCCeEEEEcCCc--------------hHHHhcc------ccccCC
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRL----GLIVYGHRDSPVVPVLVFFF--------------SKVGQTS------IGLGVE 100 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~----G~~~~~~s~SPIiPV~~g~~--------------~~~~~~a------~~i~~P 100 (153)
+.++..++.++.-.+|++.|+++ ++.....+....+.|.+-++ ..+..+. -.+..|
T Consensus 347 ~~~~l~~~~~~~G~~l~~~L~~l~~~~~~i~~VrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~ 426 (464)
T PRK06938 347 KEHRLAEHAAAMGERLREHLRQLQRDYPQLGDVRGRGLMLGVEIVDPQGEPDALGHPPANGELASLIQRECLRRGLILEL 426 (464)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEeccCcccccccccCCccHHHHHHHHHHHHHCCeEEee
Confidence 45677888888889999998753 22110112234555555321 1111121 222344
Q ss_pred CCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049 101 QTALNDGLSLYESSHLRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 101 tVP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~ 134 (153)
.-+ ....+|+.....||++|||.+++ +++...
T Consensus 427 ~g~-~~~~l~~~Ppl~it~~eid~~~~-~l~~~l 458 (464)
T PRK06938 427 GGR-HGSVVRFLPPLIITAEQIDEVAE-IFAEAV 458 (464)
T ss_pred cCC-CCCEEEEECCCccCHHHHHHHHH-HHHHHH
Confidence 312 23679999999999999999998 776554
No 238
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=54.34 E-value=92 Score=27.26 Aligned_cols=87 Identities=9% Similarity=-0.125 Sum_probs=51.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHhC----CCcccCCCCCCeEEEEcCCc-------hHHHhcc------ccccCCCCCCCCc
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRL----GLIVYGHRDSPVVPVLVFFF-------SKVGQTS------IGLGVEQTALNDG 107 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~----G~~~~~~s~SPIiPV~~g~~-------~~~~~~a------~~i~~PtVP~g~~ 107 (153)
+.+++++++.++..++++.|++. +......+..-++-|.+.++ +.+..+. -.+..|.-.. ..
T Consensus 315 ~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~~-g~ 393 (421)
T PRK06777 315 AEEKLCQRALILGAHLVEVLEKAKASCPAIVDIRARGSMVAVEFNDPQTGKPSPEFTRQYQRQALEEGLLLLSCGVH-GN 393 (421)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCceEEEEEEEecCccCCccHHHHHHHHHHHHhCCeEEeecCCC-CC
Confidence 44678999999999999999865 21110112233444433221 1122221 2233443121 25
Q ss_pred eEEEEeeCCCCHHHHHHHHHHHHHHH
Q psy5049 108 LSLYESSHLRSANLWNRPHSPSLMAV 133 (153)
Q Consensus 108 RlRI~lsA~HT~edId~L~~~~L~~~ 133 (153)
.+||...-..|+|+++..++ .++..
T Consensus 394 ~lr~~ppl~i~~~~i~~~~~-~l~~~ 418 (421)
T PRK06777 394 VIRFLYPLTIPDAQFSKALN-ILTRL 418 (421)
T ss_pred EEEEeCCCCCCHHHHHHHHH-HHHHH
Confidence 89999888899999999887 66554
No 239
>PRK06148 hypothetical protein; Provisional
Probab=54.21 E-value=68 Score=31.80 Aligned_cols=89 Identities=11% Similarity=-0.066 Sum_probs=54.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhCC--CcccC--CCCCCeEEEEcCCc--------hHHHhcc------ccccCCCCCCC
Q psy5049 44 ISGIRRISVLAHNTRYFRRKLNRLG--LIVYG--HRDSPVVPVLVFFF--------SKVGQTS------IGLGVEQTALN 105 (153)
Q Consensus 44 ~~~~~rr~~L~~ni~~fr~~L~~~G--~~~~~--~s~SPIiPV~~g~~--------~~~~~~a------~~i~~PtVP~g 105 (153)
.+.+.+.+++++.-.+|++.|+++- +.+.+ .+..-.+-|-+..+ +.+..+. -.+..|+-|.
T Consensus 902 i~~e~l~~~~~~~G~~l~~~L~~l~~~~~~i~~VrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g~~- 980 (1013)
T PRK06148 902 IEDEDLQRNALEIGNYLLAGLRELQDRFDIIGDVRGMGLFLGIELVTDRKTKAPATAIARYVKNGARERGILIGTEGPH- 980 (1013)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHhCCCceEEeeeceEEEEEecCCccccCccHHHHHHHHHHHHhCCeEEeccCCC-
Confidence 3456788999999999999998641 11100 11123334444221 1122221 2334444232
Q ss_pred CceEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049 106 DGLSLYESSHLRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 106 ~~RlRI~lsA~HT~edId~L~~~~L~~~~ 134 (153)
...+||.....||++|||++++ ++++..
T Consensus 981 ~~vlr~~Ppl~it~~~id~~l~-~l~~~l 1008 (1013)
T PRK06148 981 DNVLKIRPPLIFSRADADHLLE-VLDDVL 1008 (1013)
T ss_pred CCEEEEeCCccCCHHHHHHHHH-HHHHHH
Confidence 4789999999999999999998 776554
No 240
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=54.09 E-value=64 Score=29.42 Aligned_cols=112 Identities=12% Similarity=-0.006 Sum_probs=61.5
Q ss_pred ccEEeecCCCCCCCCccc-ccccccchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEc--------CC--chHH
Q psy5049 22 GLILYVLFQAQTKPPRSH-CICFISGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLV--------FF--FSKV 90 (153)
Q Consensus 22 g~~~~~~~~~~~~p~~~~-~l~~~~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~--------g~--~~~~ 90 (153)
||.-||.-+....--++- ......+ +..+.--++++||.+.|.+.|+.+......+-+-|=. ++ +..+
T Consensus 290 G~~tygg~~grd~~alAvgl~E~~~~-~y~~~ri~~~~~l~~~L~~~Gvpv~~p~ggH~v~vda~~~lph~~~~~~p~~a 368 (460)
T PRK13237 290 GMPSYGGMAGRDMEAMAIGIEESVQY-EYIEHRVGQVRYLGEKLLAAGVPIVEPVGGHAVFLDARRFLPHLPQDQFPAQA 368 (460)
T ss_pred CCcCCCChhhhHHHHHHhHHHhhchH-HHHHHHHHHHHHHHHHHHHCCCceecCCCceEEEEEhHHhCCCCCcccChHHH
Confidence 999898744422111121 1222222 4444455699999999999999775333333222210 10 1122
Q ss_pred Hhcc---------------ccccCCCCCCC----CceEEEEee-CCCCHHHHHHHHHHHHHHHHh
Q psy5049 91 GQTS---------------IGLGVEQTALN----DGLSLYESS-HLRSANLWNRPHSPSLMAVFR 135 (153)
Q Consensus 91 ~~~a---------------~~i~~PtVP~g----~~RlRI~ls-A~HT~edId~L~~~~L~~~~~ 135 (153)
...+ ..-+-|...+. -+.+|+++- .-.|.+++|++++ ++..+.+
T Consensus 369 l~~~ly~~~GiR~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~-~~~~~~~ 432 (460)
T PRK13237 369 LAAELYIESGVRSMERGIVSAGRDPKTGENHYPKLELVRLTIPRRVYTYAHMDVVAD-SVIKLYK 432 (460)
T ss_pred HHHHHHHHhCcCeEeecceecccCCCCCccCCCccceeeeccccccccHHHHHHHHH-HHHHHHH
Confidence 2211 11145554332 478998875 4578999999998 7766653
No 241
>PF02026 RyR: RyR domain; InterPro: IPR003032 This domain is called RyR for Ryanodine receptor []. The domain is found in four copies in the ryanodine receptor. The function of this domain is unknown.; PDB: 4ETV_A 3RQR_A 4ETT_A 4ERT_A 4ESU_A 4ETU_A 4ERV_A 3NRT_E.
Probab=53.39 E-value=78 Score=22.39 Aligned_cols=65 Identities=20% Similarity=0.116 Sum_probs=42.6
Q ss_pred hHHHHHHHhHHH-HHHHhhhcccEEee---cCCCCCCCCccccccc--ccchHHHHHHHHHHHHHHHHHHhCCCcc
Q psy5049 2 RLISVLAQNTRY-FRRKLNRLGLILYV---LFQAQTKPPRSHCICF--ISGIRRISVLAHNTRYFRRKLNRLGLIV 71 (153)
Q Consensus 2 ~~~~~~~~~~~~-~~~~l~~~g~~~~~---~~~~~~~p~~~~~l~~--~~~~~rr~~L~~ni~~fr~~L~~~G~~~ 71 (153)
..+.+||||.-- .-.+-...|.+ || |.+.-.+|. +.. ...+.-+++=.+.+.-.-+.|...|+.+
T Consensus 20 ~~~E~lAen~H~~Wa~~r~~~GW~-yG~~~d~~~k~hP~----Lvpy~~L~e~eK~~dr~~~~e~lk~l~~~Gy~i 90 (94)
T PF02026_consen 20 ELIEKLAENEHDRWAKERIEQGWT-YGEVRDDSRKTHPC----LVPYDELSEEEKEKDRDMVRETLKTLLALGYHI 90 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-B-E-SSHBTTTTBETT-----S-GGGS-HHHHHHHHHHHHHHHHHHHHTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhccce-eccccccCCCCCCC----CcChhhCCHHHHHHhHHHHHHHHHHHHHcCcEE
Confidence 357789999744 66777789998 67 556666774 322 2345566777777777788888888865
No 242
>PRK08960 hypothetical protein; Provisional
Probab=53.24 E-value=1.4e+02 Score=25.27 Aligned_cols=78 Identities=10% Similarity=-0.001 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCccc-CCCCCCeEEEEcC----CchHHH-hcc--------ccccCCCCCCCCceEEEE
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVY-GHRDSPVVPVLVF----FFSKVG-QTS--------IGLGVEQTALNDGLSLYE 112 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~-~~s~SPIiPV~~g----~~~~~~-~~a--------~~i~~PtVP~g~~RlRI~ 112 (153)
.+.++.+.++...+.+.|++.|+.+. ....+.-+-+-+. +..... ++. ++..|.. +.+..-+||+
T Consensus 288 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~~f~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~~~~iRi~ 366 (387)
T PRK08960 288 EARRAEFARRRDFLLPALRELGFGIAVEPQGAFYLYADISAFGGDAFAFCRHFLETEHVAFTPGLDFGR-HQAGQHVRFA 366 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcCCcCCCeeEEEEEeccccCCCHHHHHHHHHHhCCEEEcCchHhCC-CCCCCeEEEE
Confidence 34577888888889999998886531 1122222222222 222222 111 2222321 2234589999
Q ss_pred eeCCCCHHHHHHHHH
Q psy5049 113 SSHLRSANLWNRPHS 127 (153)
Q Consensus 113 lsA~HT~edId~L~~ 127 (153)
++. +.+++...++
T Consensus 367 ~~~--~~~~l~~al~ 379 (387)
T PRK08960 367 YTQ--SLPRLQEAVE 379 (387)
T ss_pred ecC--CHHHHHHHHH
Confidence 996 5666666444
No 243
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=53.00 E-value=1.4e+02 Score=26.59 Aligned_cols=85 Identities=11% Similarity=0.138 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCC----------chH--HHhcc---------ccc----cCCCCCC
Q psy5049 50 ISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFF----------FSK--VGQTS---------IGL----GVEQTAL 104 (153)
Q Consensus 50 r~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~----------~~~--~~~~a---------~~i----~~PtVP~ 104 (153)
.++..++.+++.+.|.+.|+.+.....++.+-+=+.. +.. +.++. .+. +.|...+
T Consensus 293 l~~~~~~r~~l~~~L~~~G~~v~~P~Ggh~v~~d~~~~~~~~~~~~~~~~~la~~L~~e~gV~~~~~g~~~~~~~~~~~~ 372 (431)
T cd00617 293 LRHRVEQVRYLGDRLDEAGVPIVEPAGGHAVFIDAREFLPHIPQEQFPAQALAAELYLEAGVRAVELGIFSAGRDPNTGE 372 (431)
T ss_pred HHHHHHHHHHHHHHHHHCCCCccCCCcceEEEEEhHHhcCCCCcccCcHHHHHHHHHHHcCeeEEeecceecccCCCCCc
Confidence 3444456699999999999877433334333332221 111 11111 111 2232221
Q ss_pred ----CCceEEEEeeC-CCCHHHHHHHHHHHHHHHHh
Q psy5049 105 ----NDGLSLYESSH-LRSANLWNRPHSPSLMAVFR 135 (153)
Q Consensus 105 ----g~~RlRI~lsA-~HT~edId~L~~~~L~~~~~ 135 (153)
.-+.+|+.+.- ..|.+++|++++ ++..+.+
T Consensus 373 ~~~~~~~~~rl~~prr~~t~~~~~~~~~-~~~~~~~ 407 (431)
T cd00617 373 NKYPELELVRLAIPRRVYTQDHMDYVAA-AVIALYE 407 (431)
T ss_pred ccCCccceeEEeccccccCHHHHHHHHH-HHHHHHh
Confidence 24889999986 789999999998 7765553
No 244
>PRK08636 aspartate aminotransferase; Provisional
Probab=52.83 E-value=1.5e+02 Score=25.40 Aligned_cols=82 Identities=11% Similarity=0.019 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCC------chHHH-hcc--------ccccCCCCCCCCceEEEE
Q psy5049 48 RRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFF------FSKVG-QTS--------IGLGVEQTALNDGLSLYE 112 (153)
Q Consensus 48 ~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~------~~~~~-~~a--------~~i~~PtVP~g~~RlRI~ 112 (153)
+.++.+.++..++.+.|++.|+.+...+.+.-+-+-+.+ ..+.. .+. ++..|. ..+..-+||+
T Consensus 302 ~~~~~~~~~~~~l~~~L~~~~~~~~~p~~g~~~~~~l~~~~~~~~~~~l~~~ll~~~gV~v~pg~~f~--~~~~~~iRi~ 379 (403)
T PRK08636 302 EIRETYRKRRDVLIESFANAGWELQKPRASMFVWAKIPEPARHLGSLEFSKQLLTEAKVAVSPGIGFG--EYGDEYVRIA 379 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCcccCCCcceEEEEECCCccCCCCHHHHHHHHHHhCCEEEecchhhC--cCCCCeEEEE
Confidence 456667788888889998877654222233333333322 12222 211 222232 2235789999
Q ss_pred eeCCCCHHHHHHHHHHHHHHHH
Q psy5049 113 SSHLRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 113 lsA~HT~edId~L~~~~L~~~~ 134 (153)
+. +++++++..++ .+....
T Consensus 380 ~~--~~~~~l~~~~~-rl~~~l 398 (403)
T PRK08636 380 LI--ENENRIRQAAR-NIKKFL 398 (403)
T ss_pred ec--CCHHHHHHHHH-HHHHHH
Confidence 95 68888888766 554443
No 245
>PRK14809 histidinol-phosphate aminotransferase; Provisional
Probab=52.82 E-value=1.4e+02 Score=24.99 Aligned_cols=76 Identities=14% Similarity=0.065 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc----ccccCCCCCC-CCceEEEEeeCCCCHHHHH
Q psy5049 49 RISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS----IGLGVEQTAL-NDGLSLYESSHLRSANLWN 123 (153)
Q Consensus 49 rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a----~~i~~PtVP~-g~~RlRI~lsA~HT~edId 123 (153)
.++.++++-.++.+.|...++ .+.+.-+-+-+.+..+..+.+ +.++ |...- ...-+||++. ++++++
T Consensus 274 ~~~~~~~~r~~l~~~L~~~~~----~~~g~f~~~~~~~~~~~~~~l~~~gv~v~-~g~~f~~~~~iRls~~---~~~~~~ 345 (357)
T PRK14809 274 TVETARWAREYIREELDAPTW----ESAGNFVLAEVGDASAVAEAAQERGVIVR-DCTSFGLPECIRITCG---TREETE 345 (357)
T ss_pred HHHHHHHHHHHHHHHhcCccC----CCCCCEEEEECCCHHHHHHHHHHCCEEEE-ECccCCCCCeEEEecC---CHHHHH
Confidence 344555555556666654332 233455555554444333332 2221 21111 1257999975 478999
Q ss_pred HHHHHHHHHH
Q psy5049 124 RPHSPSLMAV 133 (153)
Q Consensus 124 ~L~~~~L~~~ 133 (153)
..++ .|..+
T Consensus 346 ~~l~-~L~~~ 354 (357)
T PRK14809 346 RAVE-VLNEV 354 (357)
T ss_pred HHHH-HHHHH
Confidence 9887 66554
No 246
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=51.90 E-value=73 Score=28.41 Aligned_cols=83 Identities=13% Similarity=0.027 Sum_probs=51.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHhCC-C----cccCCCCCCeEEEEcCCch----------H-HHhcc------ccccCCCC
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRLG-L----IVYGHRDSPVVPVLVFFFS----------K-VGQTS------IGLGVEQT 102 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~G-~----~~~~~s~SPIiPV~~g~~~----------~-~~~~a------~~i~~PtV 102 (153)
+.+.+.++++++..+|++.|+++- . ++- +..-.+.|.+.++. . +..+. -.+..|.
T Consensus 349 ~~~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vr--G~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~- 425 (460)
T PRK06916 349 EKTNLIEQVARKTEYVATQLEDLFALKHVGDIR--QLGLMVGIELVKNKETKEPFEWTERVGVQVCKRSRELGMLTRPL- 425 (460)
T ss_pred HhccHHHHHHHHHHHHHHHHHHhhcCCCeEEee--cCCceeeEEeecccccccCCCchhhHHHHHHHHHHHCCeEEEec-
Confidence 445688999999999999998641 1 111 11233444332211 0 11121 2223332
Q ss_pred CCCCceEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049 103 ALNDGLSLYESSHLRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 103 P~g~~RlRI~lsA~HT~edId~L~~~~L~~~~ 134 (153)
| ..+|+..+..||++|||.+++ +++...
T Consensus 426 --g-~~l~~~Ppl~it~~~id~~~~-~l~~~l 453 (460)
T PRK06916 426 --G-NTIVFMPPLASTIDELDEMLR-ILYKAI 453 (460)
T ss_pred --C-CEEEEeCCcccCHHHHHHHHH-HHHHHH
Confidence 3 479999999999999999998 776554
No 247
>PRK06836 aspartate aminotransferase; Provisional
Probab=51.47 E-value=1.5e+02 Score=25.20 Aligned_cols=80 Identities=11% Similarity=0.027 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcC--CchHHHhcc--------ccccCCCCCCCCceEEEEeeCCC
Q psy5049 48 RRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVF--FFSKVGQTS--------IGLGVEQTALNDGLSLYESSHLR 117 (153)
Q Consensus 48 ~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g--~~~~~~~~a--------~~i~~PtVP~g~~RlRI~lsA~H 117 (153)
..++.+.++-..+.+.|++.|+.+.....+..+-+-+. +.....+.+ ....|. . ..-+||+++ +
T Consensus 300 ~~~~~~~~~r~~l~~~L~~~g~~~~~~~gg~~~~~~~~~~~~~~~~~~l~~~gv~v~~g~~f~-~---~~~iRi~~~--~ 373 (394)
T PRK06836 300 VDVSIYKRNRDLLYDGLTELGFECVKPQGAFYLFPKSPEEDDVAFCEKAKKHNLLLVPGSGFG-C---PGYFRLSYC--V 373 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEeecCCceEEEEEeCCCCCHHHHHHHHHhCCEEEECchhcC-C---CCeEEEEec--C
Confidence 45677888888899999888876532222333333332 222222222 222332 1 257999997 6
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy5049 118 SANLWNRPHSPSLMAVF 134 (153)
Q Consensus 118 T~edId~L~~~~L~~~~ 134 (153)
++++++..++ .|..+.
T Consensus 374 ~~~~~~~~i~-~l~~~l 389 (394)
T PRK06836 374 DTETIERSLP-AFEKLA 389 (394)
T ss_pred CHHHHHHHHH-HHHHHH
Confidence 8999888776 565443
No 248
>PRK07179 hypothetical protein; Provisional
Probab=51.16 E-value=13 Score=31.93 Aligned_cols=53 Identities=23% Similarity=0.251 Sum_probs=34.4
Q ss_pred HHHHHHHhHHHHHHHhhhcccEEeecCCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHhCCCc
Q psy5049 3 LISVLAQNTRYFRRKLNRLGLILYVLFQAQTKPPRSHCICFISGIRRISVLAHNTRYFRRKLNRLGLI 70 (153)
Q Consensus 3 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~~~l~~~~~~~rr~~L~~ni~~fr~~L~~~G~~ 70 (153)
..+++.++++||+++|.++||.++|. +.+.+ +... .. .....+.+.|.+.|+.
T Consensus 304 ~~~~l~~~~~~l~~~L~~~g~~v~~~--~~i~~-----l~~~--~~------~~~~~~~~~L~~~GI~ 356 (407)
T PRK07179 304 RRARLHANARFLREGLSELGYNIRSE--SQIIA-----LETG--SE------RNTEVLRDALEERNVF 356 (407)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCC--CCEEE-----EEeC--CH------HHHHHHHHHHHHCCce
Confidence 45789999999999999999988642 22222 2111 11 1335566777778864
No 249
>COG2833 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.78 E-value=16 Score=30.83 Aligned_cols=60 Identities=23% Similarity=0.237 Sum_probs=36.2
Q ss_pred HHHHHHhHHHH---HHHhhhcccEEeecCCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHhCCCcc
Q psy5049 4 ISVLAQNTRYF---RRKLNRLGLILYVLFQAQTKPPRSHCICFISGIRRISVLAHNTRYFRRKLNRLGLIV 71 (153)
Q Consensus 4 ~~~~~~~~~~~---~~~l~~~g~~~~~~~~~~~~p~~~~~l~~~~~~~rr~~L~~ni~~fr~~L~~~G~~~ 71 (153)
+++-.|+.+|| |++|+.+||. ||||-||.-=. .. ...-+.-|+......-..|...|++.
T Consensus 113 m~VA~EE~~HF~Ll~~~L~~LG~~-YGDfpaHdgLw-----~~--a~~T~~dl~~RmalVprvLEARGLDa 175 (268)
T COG2833 113 MRVADEEAKHFRLLRERLKSLGYD-YGDFPAHDGLW-----QM--AEATANDLLARMALVPRVLEARGLDA 175 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC-cCCCcccccHH-----HH--HHHhhcCHHHHhhhhhhHHhhccCCC
Confidence 34556788886 6999999999 89988776431 11 11223334444455555555556553
No 250
>PRK07482 hypothetical protein; Provisional
Probab=50.77 E-value=85 Score=27.99 Aligned_cols=87 Identities=11% Similarity=-0.022 Sum_probs=51.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHhC----CCcccCCCCCCeEEEEcCCch-----------HHHhcc-----ccc-cCCCCC
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRL----GLIVYGHRDSPVVPVLVFFFS-----------KVGQTS-----IGL-GVEQTA 103 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~----G~~~~~~s~SPIiPV~~g~~~-----------~~~~~a-----~~i-~~PtVP 103 (153)
+.+...++.++.-.++++.|++. ++.....+...++-|.+..+. .+..+. ..+ ..| .|
T Consensus 345 ~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~-~~ 423 (461)
T PRK07482 345 ERENLVGNAAEVGAYFRARLRAAFGDHPLVGEVRGVGMLAAVEFVADRDDRTPFDPALKIGPQVSAAALERGVIARA-MP 423 (461)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeeceeEEEEEeccCCCcCCCCChhhHHHHHHHHHHHHCCcEEec-CC
Confidence 45667888889999999999743 221101122345555553211 011221 222 223 23
Q ss_pred CCCceEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049 104 LNDGLSLYESSHLRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 104 ~g~~RlRI~lsA~HT~edId~L~~~~L~~~~ 134 (153)
. ...+|+.....||++|||++++ ++++..
T Consensus 424 ~-~~~i~~~Ppl~it~~ei~~~~~-~l~~~l 452 (461)
T PRK07482 424 H-GDILGFAPPLVLTRAEADEIVA-IAKDAV 452 (461)
T ss_pred C-CCEEEEeCCCCCCHHHHHHHHH-HHHHHH
Confidence 2 3579999999999999999988 775544
No 251
>PLN02822 serine palmitoyltransferase
Probab=49.61 E-value=13 Score=33.44 Aligned_cols=33 Identities=15% Similarity=0.185 Sum_probs=24.7
Q ss_pred HHHHHHHhHHHHHHHhhhc-ccEEeecCCCCCCC
Q psy5049 3 LISVLAQNTRYFRRKLNRL-GLILYVLFQAQTKP 35 (153)
Q Consensus 3 ~~~~~~~~~~~~~~~l~~~-g~~~~~~~~~~~~p 35 (153)
..+++.+|.+||+++|++. ||.+.+...+++.+
T Consensus 369 ~~~~l~~~~~~l~~~L~~~~g~~~~~~~~spi~~ 402 (481)
T PLN02822 369 VLAKLKENIALLHKGLSDIPGLSIGSNTLSPIVF 402 (481)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccCCCCCCCEEE
Confidence 4578999999999999997 98875443444443
No 252
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=49.17 E-value=42 Score=27.76 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=22.0
Q ss_pred HHHHHHHhHHHHHHHhhhcccEEeec
Q psy5049 3 LISVLAQNTRYFRRKLNRLGLILYVL 28 (153)
Q Consensus 3 ~~~~~~~~~~~~~~~l~~~g~~~~~~ 28 (153)
..++..++++|++++|...||.+++.
T Consensus 260 ~~~~~~~~~~~l~~~L~~~g~~~~~~ 285 (356)
T cd06451 260 RWARHRRLAKALREGLEALGLKLLAK 285 (356)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeeccC
Confidence 35667789999999999999999765
No 253
>PRK06062 hypothetical protein; Provisional
Probab=48.89 E-value=22 Score=31.57 Aligned_cols=28 Identities=7% Similarity=-0.147 Sum_probs=23.7
Q ss_pred ceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049 107 GLSLYESSHLRSANLWNRPHSPSLMAVFR 135 (153)
Q Consensus 107 ~RlRI~lsA~HT~edId~L~~~~L~~~~~ 135 (153)
..+|++....||++|||++++ +++...+
T Consensus 417 ~~lrl~ppl~~t~~eid~~~~-~l~~~l~ 444 (451)
T PRK06062 417 NRIHVVPPCTVTEDEVREGLA-ILDAALA 444 (451)
T ss_pred CEEEEECCccCCHHHHHHHHH-HHHHHHH
Confidence 579999999999999999998 7765543
No 254
>PRK07324 transaminase; Validated
Probab=48.89 E-value=1.7e+02 Score=24.87 Aligned_cols=81 Identities=7% Similarity=-0.027 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcCC---chH-HHhcc--------ccccCCCCCCCCceEEEEe
Q psy5049 47 IRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVFF---FSK-VGQTS--------IGLGVEQTALNDGLSLYES 113 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g~---~~~-~~~~a--------~~i~~PtVP~g~~RlRI~l 113 (153)
.+.++.+.++...+.+.|.+. ++.......+.-+-+.+.. ... +.++. ++..|.. ..-+||++
T Consensus 275 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~gg~~~~i~~~~~~~~~~~~~~ll~~~gv~v~pg~~F~~----~~~iRis~ 350 (373)
T PRK07324 275 ERNRKIVRTNLAILDEWVAKEPRVSYVKPKAVSTSFVKLDVDMPSEDFCLKLLKETGVLLVPGNRFDL----EGHVRIGY 350 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCceEECCCceEEEEEEeCCCCCHHHHHHHHHHhcCEEEECccccCC----CCeEEEEe
Confidence 344556667777777777765 4432211212222233321 121 11211 2223321 35899999
Q ss_pred eCCCCHHHHHHHHHHHHHHHH
Q psy5049 114 SHLRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 114 sA~HT~edId~L~~~~L~~~~ 134 (153)
+. +++.+...++ .+..+.
T Consensus 351 ~~--~~~~l~~~l~-rl~~~l 368 (373)
T PRK07324 351 CC--DTETLKKGLK-KLSEFL 368 (373)
T ss_pred cC--CHHHHHHHHH-HHHHHH
Confidence 75 5788888666 555443
No 255
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=48.63 E-value=33 Score=28.92 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=19.0
Q ss_pred HHHHHhHHHHHHHhhhcc-cEEeec
Q psy5049 5 SVLAQNTRYFRRKLNRLG-LILYVL 28 (153)
Q Consensus 5 ~~~~~~~~~~~~~l~~~g-~~~~~~ 28 (153)
++..+.++|++++|+++| +.+++.
T Consensus 297 ~~~~~l~~~l~~~L~~~~~~~~~~~ 321 (397)
T TIGR01976 297 AYENRLAEYLLVGLSDLPGVTLYGV 321 (397)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEeCC
Confidence 344667889999999986 998874
No 256
>PLN02672 methionine S-methyltransferase
Probab=48.42 E-value=1.5e+02 Score=30.03 Aligned_cols=84 Identities=10% Similarity=0.071 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcC---------------------CchHHHh-cc----ccccCCC
Q psy5049 48 RRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVF---------------------FFSKVGQ-TS----IGLGVEQ 101 (153)
Q Consensus 48 ~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g---------------------~~~~~~~-~a----~~i~~Pt 101 (153)
+.++.++++..++.+.|.+.|+.+. .++.-.+-+.-. +...... +. +.+.+-.
T Consensus 970 e~r~~Lk~rRd~L~e~L~~~Gi~v~-~PeGGFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs 1048 (1082)
T PLN02672 970 EQKKILKSRAERLKETLEACGWDVL-EPQGGISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSS 1048 (1082)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCeEe-cCCcEEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEEecCc
Confidence 4567799999999999999888653 233333222210 1111111 11 2233222
Q ss_pred CCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049 102 TALNDGLSLYESSHLRSANLWNRPHSPSLMAVFR 135 (153)
Q Consensus 102 VP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~ 135 (153)
.--...-+||++.. +++++++.++ .|+...+
T Consensus 1049 ~FG~~g~~RIsfa~--~~e~LeeALe-rL~kf~~ 1079 (1082)
T PLN02672 1049 WTGIPGYCRFSFAL--EDSEFDRALK-AIARFKE 1079 (1082)
T ss_pred ccCCCCeEEEEecC--CHHHHHHHHH-HHHHHHH
Confidence 11124679999974 7889999887 7766544
No 257
>PRK12462 phosphoserine aminotransferase; Provisional
Probab=48.13 E-value=1.9e+02 Score=25.35 Aligned_cols=85 Identities=13% Similarity=-0.132 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhCC-Cccc---CCCCCC-eEEEEcCCchHHHhcc---------ccccCCCCCCCCceEEEE
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLG-LIVY---GHRDSP-VVPVLVFFFSKVGQTS---------IGLGVEQTALNDGLSLYE 112 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G-~~~~---~~s~SP-IiPV~~g~~~~~~~~a---------~~i~~PtVP~g~~RlRI~ 112 (153)
+.+.++-++..+.+++.+.+.+ |... ....|. -|++-+.+++...++. ..-.|.. -+.+|++
T Consensus 264 ~~~~~r~~~ka~~ly~~id~~~~~~~~~~~~~~RS~mnv~f~~~~~~l~~~f~~~a~~~gl~~lkGhr~----vgg~Ras 339 (364)
T PRK12462 264 HAMRDINARKAAMLYATLDALNEVIDCHAHRAARSTMNVAFRFRQPRLDTLFKEQSTEAGFCGLSGHRS----IGGIRAS 339 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcCcceEEEEcCCHHHHHHHHHHHHHCCCccccCCcc----cCceEEE
Confidence 4555666788888999998776 5321 122354 4555667765554443 2224555 4569999
Q ss_pred eeCCCCHHHHHHHHHHHHHHHHhc
Q psy5049 113 SSHLRSANLWNRPHSPSLMAVFRG 136 (153)
Q Consensus 113 lsA~HT~edId~L~~~~L~~~~~~ 136 (153)
+=.+.+.|+++.|++ .++...+.
T Consensus 340 ~yna~~~e~v~~L~~-fm~~f~~~ 362 (364)
T PRK12462 340 LYNAVSEQAVSRLCA-FLKDFAIR 362 (364)
T ss_pred cCCCCCHHHHHHHHH-HHHHHHHh
Confidence 999999999999999 77776553
No 258
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=47.66 E-value=46 Score=29.11 Aligned_cols=96 Identities=11% Similarity=0.050 Sum_probs=54.0
Q ss_pred HHHHHhHHHHHHHhhhcc-cEEeecCCCCCCCCcccc--cccccchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEE
Q psy5049 5 SVLAQNTRYFRRKLNRLG-LILYVLFQAQTKPPRSHC--ICFISGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVP 81 (153)
Q Consensus 5 ~~~~~~~~~~~~~l~~~g-~~~~~~~~~~~~p~~~~~--l~~~~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiP 81 (153)
+.=-+++|||-.+|.++| |.-.|. .|=--.. +...-..+..++-...--+|.+.|++.|+. |.. |
T Consensus 282 deEv~kaR~fv~elEkigg~~qlG~-----rPk~HdLm~Fetp~f~eIakk~~r~gyFlY~ELK~RgI~--GI~--~--- 349 (382)
T COG1103 282 DEEVEKARWFVAELEKIGGVKQLGE-----RPKNHDLMKFETPVFHEIAKKHKRKGYFLYEELKKRGIH--GIQ--P--- 349 (382)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHhCC-----CCcccceeeecCchHHHHHHhCcCCceeeHHHHHhcCcc--ccc--c---
Confidence 334578999999999999 888885 2311111 111222333333333344567777777742 110 1
Q ss_pred EEcCCchHHHhccccccCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Q psy5049 82 VLVFFFSKVGQTSIGLGVEQTALNDGLSLYESSHLRSANLWNRPHSPSLMAVFRG 136 (153)
Q Consensus 82 V~~g~~~~~~~~a~~i~~PtVP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~~ 136 (153)
| ..+-==+-.-..|.||++++++ +++.+.+.
T Consensus 350 ---G--------------------~Tk~~K~svyGl~~Eqve~V~~-afkeI~ek 380 (382)
T COG1103 350 ---G--------------------QTKYFKLSVYGLSWEQVEYVVD-AFKEIAEK 380 (382)
T ss_pred ---C--------------------ceeEEEEEeecCCHHHHHHHHH-HHHHHHHh
Confidence 1 1111111224588999999998 88877654
No 259
>PLN02271 serine hydroxymethyltransferase
Probab=47.16 E-value=72 Score=30.09 Aligned_cols=92 Identities=8% Similarity=-0.058 Sum_probs=59.5
Q ss_pred cccchHHHHHHHHHHHHHHHHHHhCCCccc-CCCCCCeEEEEcCC----chHHHhc---c------ccccCCCCCCCCce
Q psy5049 43 FISGIRRISVLAHNTRYFRRKLNRLGLIVY-GHRDSPVVPVLVFF----FSKVGQT---S------IGLGVEQTALNDGL 108 (153)
Q Consensus 43 ~~~~~~rr~~L~~ni~~fr~~L~~~G~~~~-~~s~SPIiPV~~g~----~~~~~~~---a------~~i~~PtVP~g~~R 108 (153)
..++.+..++..+|++.|.+.|.+.||.+. |.++++.+=|=+.. ...+.+. + +.+-+..-|...+.
T Consensus 430 ~~efk~Ya~QVv~NAkaLA~~L~~~G~~vv~ggTdnHlvLvDl~~~g~~G~~ae~~Le~~~I~~Nkn~iP~d~~~~~psG 509 (586)
T PLN02271 430 TPEYKAYMQQVKKNAQALASALLRRKCRLVTGGTDNHLLLWDLTTLGLTGKNYEKVCEMCHITLNKTAIFGDNGTISPGG 509 (586)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHCCCeEeeCCCCcceeeecCcccCCCHHHHHHHHHHcCeEeccccCCCCCCCCCCCc
Confidence 446688999999999999999999999753 45778865544422 1222222 2 33323333444567
Q ss_pred EEEEee----CCCCHHHHHHHHHHHHHHHHh
Q psy5049 109 SLYESS----HLRSANLWNRPHSPSLMAVFR 135 (153)
Q Consensus 109 lRI~ls----A~HT~edId~L~~~~L~~~~~ 135 (153)
+||-.. -...++|++++.+ .+..+.+
T Consensus 510 iRiGT~alT~rG~~e~d~~~iA~-~i~~~~~ 539 (586)
T PLN02271 510 VRIGTPAMTSRGCLESDFETIAD-FLLRAAQ 539 (586)
T ss_pred ccccCHHHHhcCCCcHHHHHHHH-HHHHHHh
Confidence 999764 4677899999777 5554433
No 260
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=46.82 E-value=1.4e+02 Score=26.04 Aligned_cols=86 Identities=9% Similarity=-0.032 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhCC-CcccC-CCCCCeEEEEcC---CchHHHhcc----ccccCCCCC----CCCceEEEEe
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLG-LIVYG-HRDSPVVPVLVF---FFSKVGQTS----IGLGVEQTA----LNDGLSLYES 113 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G-~~~~~-~s~SPIiPV~~g---~~~~~~~~a----~~i~~PtVP----~g~~RlRI~l 113 (153)
...++...++-..+.+.|.+.+ +.+.. .....-+.+-+. +........ ....-|... .|+.-+|+++
T Consensus 292 ~~~~~~~~~rrd~l~~~l~~~~g~~~~~~p~Ga~Y~~~~i~~~~d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRis~ 371 (393)
T COG0436 292 EEMREEYRERRDLLVEALNEIGGLSVVKPPEGAFYLFPKIPELLDSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLSL 371 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCeeeccCCCeeEEEEeecCCCCCHHHHHHHHHHhCCEEEecccccCCCCCCCeEEEEE
Confidence 4455778999999999999776 66533 122333333332 222222211 222333332 4667999998
Q ss_pred eCCCCHHHHHHHHHHHHHHHHh
Q psy5049 114 SHLRSANLWNRPHSPSLMAVFR 135 (153)
Q Consensus 114 sA~HT~edId~L~~~~L~~~~~ 135 (153)
.... ++++..++ .++...+
T Consensus 372 ~~~~--~~l~~a~~-rl~~~~~ 390 (393)
T COG0436 372 ATSE--ETLEEALR-RLARFLA 390 (393)
T ss_pred ecCH--HHHHHHHH-HHHHHHH
Confidence 8776 88888777 6665543
No 261
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=46.44 E-value=1.9e+02 Score=26.32 Aligned_cols=113 Identities=12% Similarity=0.012 Sum_probs=63.7
Q ss_pred cccEEeecCCCCC-CCCcccccccccchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCC----------chH
Q psy5049 21 LGLILYVLFQAQT-KPPRSHCICFISGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFF----------FSK 89 (153)
Q Consensus 21 ~g~~~~~~~~~~~-~p~~~~~l~~~~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~----------~~~ 89 (153)
-||.-||.-++.- -.+ +..+.-.......++-.++++||.+.|.+.|+.+.....++++-|=... +..
T Consensus 282 eG~~tyGgla~r~~~al-a~gL~e~~~~~y~~~r~~~a~~La~~L~~~Gvpv~~p~ggh~V~vda~~~lph~~~~~~p~~ 360 (450)
T TIGR02618 282 EGMPSYGGLAGRDMEAM-AIGIREAVDYEYIEHRVKQVRYLGDKLKAAGVPIVEPVGGHAVFLDARRFLPHIPQDQFPAQ 360 (450)
T ss_pred CCccccCchhhhhHHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHCCCcccCCCCcceEEEEhHHhCCCCChhhChHH
Confidence 4898888633322 221 1112111122333444457999999999999977444556766553222 111
Q ss_pred HHhcc---------------ccccCCCCCCC----CceEEEEee-CCCCHHHHHHHHHHHHHHHHh
Q psy5049 90 VGQTS---------------IGLGVEQTALN----DGLSLYESS-HLRSANLWNRPHSPSLMAVFR 135 (153)
Q Consensus 90 ~~~~a---------------~~i~~PtVP~g----~~RlRI~ls-A~HT~edId~L~~~~L~~~~~ 135 (153)
+...+ ..-+-|...+. -+.+|+++- .-.|.+++|++++ ++..+.+
T Consensus 361 al~~~ly~~~gir~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~-~~~~~~~ 425 (450)
T TIGR02618 361 SLAASIYVETGVRSMERGIVSAGRNNVTGEHHRPKLELVRLTIPRRVYTYAHMDVVAD-GIIKLYK 425 (450)
T ss_pred HHHHHHHHHhCccEEeecceecccCCCCCcccCCccceeeeccccccccHhHHHHHHH-HHHHHHh
Confidence 22211 11155554332 478998875 4578999999998 7766653
No 262
>KOG2848|consensus
Probab=46.29 E-value=53 Score=28.04 Aligned_cols=50 Identities=14% Similarity=0.100 Sum_probs=29.7
Q ss_pred CCCCeEEEEcCCchHHHhc-----c----ccccCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049 75 RDSPVVPVLVFFFSKVGQT-----S----IGLGVEQTALNDGLSLYESSHLRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 75 s~SPIiPV~~g~~~~~~~~-----a----~~i~~PtVP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~ 134 (153)
.+-|||||.+.+-..-+.- . ....-|.|| +...|++|||.|++.|-.++.
T Consensus 194 aqVPIVPvv~ssy~~f~~~~~k~f~sG~v~V~vL~pI~----------TeglT~ddv~~L~~~~R~~M~ 252 (276)
T KOG2848|consen 194 AQVPIVPVVFSSYGDFYSTKEKVFNSGNVIVRVLPPIP----------TEGLTKDDVDVLSDECRSAML 252 (276)
T ss_pred cCCCEEEEEEecccccccCccceeecceEEEEEcCCCC----------ccCCCcccHHHHHHHHHHHHH
Confidence 5589999988664322211 0 222344445 456899999999884433433
No 263
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=45.34 E-value=80 Score=28.43 Aligned_cols=91 Identities=5% Similarity=-0.014 Sum_probs=58.6
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHhCC--Ccc--cCCCCCCeEEEEcCCchHHHhcc------ccccCCCCCCCCceEE
Q psy5049 41 ICFISGIRRISVLAHNTRYFRRKLNRLG--LIV--YGHRDSPVVPVLVFFFSKVGQTS------IGLGVEQTALNDGLSL 110 (153)
Q Consensus 41 l~~~~~~~rr~~L~~ni~~fr~~L~~~G--~~~--~~~s~SPIiPV~~g~~~~~~~~a------~~i~~PtVP~g~~RlR 110 (153)
+.-...+...++.++.-.||++.|+++. +.+ ...+..=.+-+.+..+..+..+. -....++ +...+|
T Consensus 297 l~~l~~e~ll~~v~~~g~~~~~~L~~l~~~~~~v~~vRG~GLmiGiel~~~~~a~~~~~~~~~~gvL~~~a---~~~ViR 373 (404)
T COG4992 297 LEVLLEEGLLENVREKGEYLLQRLRELKRRYPLVKEVRGRGLMIGIELKEPYRARDIVRALREEGVLVLPA---GPNVIR 373 (404)
T ss_pred HHHHcchhHHHHHHHHHHHHHHHHHHHhhcCCceeeeecceeEEEEEecCcccHHHHHHHHHHCCeEEecC---CCCeEE
Confidence 4445678889999999999999998752 111 01122335556565542233322 2223333 345999
Q ss_pred EEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049 111 YESSHLRSANLWNRPHSPSLMAVFR 135 (153)
Q Consensus 111 I~lsA~HT~edId~L~~~~L~~~~~ 135 (153)
+...-..|+||||..++ .++...+
T Consensus 374 ~~PpL~i~~eei~~~~~-~l~~~l~ 397 (404)
T COG4992 374 FLPPLVITEEEIDEALD-ALERALA 397 (404)
T ss_pred ecCCccCCHHHHHHHHH-HHHHHHH
Confidence 99999999999999988 7765544
No 264
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=45.21 E-value=61 Score=20.19 Aligned_cols=32 Identities=9% Similarity=-0.166 Sum_probs=24.9
Q ss_pred ceEEEEeeCCCCHHHHHHHHHHHHHHHHhcCC
Q psy5049 107 GLSLYESSHLRSANLWNRPHSPSLMAVFRGGG 138 (153)
Q Consensus 107 ~RlRI~lsA~HT~edId~L~~~~L~~~~~~~~ 138 (153)
+-++|.+.+..|.|+-..|.+...+.+.+.++
T Consensus 2 P~i~I~~~~grs~eqk~~l~~~it~~l~~~~~ 33 (62)
T PRK00745 2 PTFHIELFEGRTVEQKRKLVEEITRVTVETLG 33 (62)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 35789999999999999999944455666654
No 265
>PRK06767 methionine gamma-lyase; Provisional
Probab=45.06 E-value=2e+02 Score=24.72 Aligned_cols=83 Identities=10% Similarity=-0.062 Sum_probs=50.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHhCC-CcccC-----------CCCCCeEEEEcC-CchHHHhcc----------------c
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRLG-LIVYG-----------HRDSPVVPVLVF-FFSKVGQTS----------------I 95 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~G-~~~~~-----------~s~SPIiPV~~g-~~~~~~~~a----------------~ 95 (153)
..+.+.++.++|+.++.+.|.+.. +.... ...+.|+.+.+. +.+.+.++. .
T Consensus 256 tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~~~~~~~~f~~~l~~~~~~~s~G~~~s 335 (386)
T PRK06767 256 TLAVRMDRHCDNAEKIVSFLKNHDAVEGVWYPEGELASRQMKRGGGVISFSIKGGKEETQAFINDLHFITIAVSLGDTET 335 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCcHHHHHhCCCCCceEEEEEcCCHHHHHHHHHhCCccEEecCCCCcCc
Confidence 446788999999999999999763 32111 123568888884 333344432 3
Q ss_pred cccCCCC------C--------CCCceEEEEeeCCCCHHHHHHHHH
Q psy5049 96 GLGVEQT------A--------LNDGLSLYESSHLRSANLWNRPHS 127 (153)
Q Consensus 96 ~i~~PtV------P--------~g~~RlRI~lsA~HT~edId~L~~ 127 (153)
.+.+|.. + ...+.+|+++--.+.++=|+-+-.
T Consensus 336 l~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGlE~~~dl~~dl~~ 381 (386)
T PRK06767 336 LIQHPATMTHAAIPAELRQEMGIYDNLIRLSVGLESWEDIVSDLEQ 381 (386)
T ss_pred cccCCCccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHH
Confidence 3444432 1 124689999998774444443333
No 266
>PRK06855 aminotransferase; Validated
Probab=44.23 E-value=1.9e+02 Score=25.16 Aligned_cols=25 Identities=8% Similarity=-0.104 Sum_probs=19.3
Q ss_pred eEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049 108 LSLYESSHLRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 108 RlRI~lsA~HT~edId~L~~~~L~~~~ 134 (153)
.+||+++. .++|+|+..++ .|..+.
T Consensus 403 ~~Rls~~~-~~~~~i~~~~~-~l~~~~ 427 (433)
T PRK06855 403 GFRVTLLE-RDEEKFEWIYQ-TLAEKI 427 (433)
T ss_pred ceEEEECC-CcHHHHHHHHH-HHHHHH
Confidence 49999976 57999999777 665544
No 267
>PLN02397 aspartate transaminase
Probab=43.50 E-value=2.2e+02 Score=24.75 Aligned_cols=76 Identities=11% Similarity=-0.038 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhCC----CcccCCCCCCeEEEEcCC-chHHHhcc----ccccCCCCCCCCceEEEEeeCCC
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLG----LIVYGHRDSPVVPVLVFF-FSKVGQTS----IGLGVEQTALNDGLSLYESSHLR 117 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G----~~~~~~s~SPIiPV~~g~-~~~~~~~a----~~i~~PtVP~g~~RlRI~lsA~H 117 (153)
.+.++.++++-.++.+.|++.| +.+. .++.- +-+++.- .+.+..+. +.+ ++.| ||++.+ .
T Consensus 335 ~~~~~~~~~rr~~l~~~L~~~~~~~~~~~~-~p~gg-~fl~~~l~~~~~~~Ll~~~~V~v----~~~~----Ri~~~~-~ 403 (423)
T PLN02397 335 KGMADRIISMRQKLYDALEARGSPGDWSHI-TKQIG-MFSFTGLNKEQVDRMTKEYHIYM----TRDG----RISMAG-L 403 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCcc-cCCce-EEEecCCCHHHHHHHHHhCCEEE----CCCC----eEEEee-C
Confidence 3457788899999999999887 4431 12222 2244432 23333332 332 1323 999944 8
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy5049 118 SANLWNRPHSPSLMAVF 134 (153)
Q Consensus 118 T~edId~L~~~~L~~~~ 134 (153)
++++++++++ .++.+.
T Consensus 404 ~~~~i~~~~~-~i~~~~ 419 (423)
T PLN02397 404 SSKNVPYLAD-AIHAVV 419 (423)
T ss_pred CHHHHHHHHH-HHHHHH
Confidence 8999999888 666554
No 268
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=43.18 E-value=2.4e+02 Score=25.06 Aligned_cols=86 Identities=8% Similarity=-0.083 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCC-eEEEEcCC----c--hHHHhc-------cccccCCCC---CCCCceE
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSP-VVPVLVFF----F--SKVGQT-------SIGLGVEQT---ALNDGLS 109 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SP-IiPV~~g~----~--~~~~~~-------a~~i~~PtV---P~g~~Rl 109 (153)
.+.++++.+.-..+.+.|++.|+.+. .++.- -+-+-+.. . ....++ ......|.- ..+..-+
T Consensus 327 ~~~~~~l~~rr~~l~~~L~~~gi~~~-~~~~g~flwi~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~f~~~~~g~~ 405 (468)
T PLN02450 327 EENQKRLKQRQKKLVSGLEAAGIKCL-KSNAGLFCWVDMRHLLKSNTFEAEMELWKKIVYEVKLNISPGSSCHCTEPGWF 405 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccc-CCCceEEEEEEchHhcCcCCchHHHHHHHHHHHhCCEEEeCccccCCCCCCEE
Confidence 45678888888899999999887653 23332 11112211 0 011111 111122221 1234679
Q ss_pred EEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049 110 LYESSHLRSANLWNRPHSPSLMAVFR 135 (153)
Q Consensus 110 RI~lsA~HT~edId~L~~~~L~~~~~ 135 (153)
||++++ +++++++..++ .+..+.+
T Consensus 406 Rl~f~~-~~~~~l~~~l~-ri~~~l~ 429 (468)
T PLN02450 406 RVCFAN-MSEETLDLAMK-RLKSFVE 429 (468)
T ss_pred EEEecC-CCHHHHHHHHH-HHHHHHH
Confidence 999998 67899999877 6655543
No 269
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=42.78 E-value=2.1e+02 Score=24.31 Aligned_cols=74 Identities=8% Similarity=-0.067 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCC----cccCCCCCCeEEEEcCCc-hHHHhcc---ccccCCCCCCCCceEEEEeeCCCCH
Q psy5049 48 RRISVLAHNTRYFRRKLNRLGL----IVYGHRDSPVVPVLVFFF-SKVGQTS---IGLGVEQTALNDGLSLYESSHLRSA 119 (153)
Q Consensus 48 ~rr~~L~~ni~~fr~~L~~~G~----~~~~~s~SPIiPV~~g~~-~~~~~~a---~~i~~PtVP~g~~RlRI~lsA~HT~ 119 (153)
+.|+.++++-..+.+.|++.+. .+. .++.- +.+++.-+ +.+..++ .....| .| ||++++ .++
T Consensus 313 ~~r~~~~~rr~~l~~~L~~~~~~~~~~~~-~p~gg-~~~w~~l~~~~~~~l~~~~~V~~~p---~~----ri~~~~-~~~ 382 (396)
T PRK09257 313 EMRERIKAMRQLLVEALKAKGPSRDFDFI-ARQRG-MFSYSGLTPEQVDRLREEFGVYAVG---SG----RINVAG-LNE 382 (396)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcccc-cccce-EEEecCCCHHHHHHHHHcCCEEEcC---CC----eEEEee-CCH
Confidence 3677888888899999988753 221 12222 33444433 4444443 222333 22 999966 889
Q ss_pred HHHHHHHHHHHHH
Q psy5049 120 NLWNRPHSPSLMA 132 (153)
Q Consensus 120 edId~L~~~~L~~ 132 (153)
++|+++++ .+..
T Consensus 383 ~~i~~~~~-~i~~ 394 (396)
T PRK09257 383 SNIDYVAE-AIAA 394 (396)
T ss_pred HHHHHHHH-HHHh
Confidence 99999777 5543
No 270
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=42.56 E-value=54 Score=29.19 Aligned_cols=32 Identities=25% Similarity=0.342 Sum_probs=25.1
Q ss_pred HHHHHHhHHHHHHHhhhcccEEeecCCCCCCCC
Q psy5049 4 ISVLAQNTRYFRRKLNRLGLILYVLFQAQTKPP 36 (153)
Q Consensus 4 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~ 36 (153)
++|=+.+.+++|..|..+||.+++ ..+.-.|-
T Consensus 267 ~~RH~~~~~a~r~~~~alGl~~~~-~~~~~s~t 298 (383)
T COG0075 267 IARHRRLAEALRAGLEALGLELFA-DPERRSPT 298 (383)
T ss_pred HHHHHHHHHHHHHHHHHcCCcccc-CcccCCCc
Confidence 566778899999999999999999 33344454
No 271
>KOG1383|consensus
Probab=41.99 E-value=1.2e+02 Score=28.08 Aligned_cols=75 Identities=13% Similarity=0.164 Sum_probs=51.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcCCchH--HHhcc----------ccccCCCCCCCCceEE
Q psy5049 44 ISGIRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVFFFSK--VGQTS----------IGLGVEQTALNDGLSL 110 (153)
Q Consensus 44 ~~~~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g~~~~--~~~~a----------~~i~~PtVP~g~~RlR 110 (153)
+.+.+.-++..++++++++++.+. ++.+.|. |-+.++..+... ..+++ ++..+|+ -+-
T Consensus 350 eGY~~~~~~ive~~~~l~egie~i~~i~i~gk---p~vs~~~~~s~~~~i~elsd~l~~~GW~lnalq~P~------a~H 420 (491)
T KOG1383|consen 350 EGYRENTQNIVETARKLREGIENIKGIKIVGK---PLVSFILFGSNDVNIFELSDLLRKKGWILNALQFPA------AIH 420 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccceecCC---CcEEEEEccCCccchhhhhHHHHhcCcCccccCCCC------ceE
Confidence 456788889999999999999875 4555443 777777665432 22222 5555555 577
Q ss_pred EEeeCCCCHHHH-HHHHH
Q psy5049 111 YESSHLRSANLW-NRPHS 127 (153)
Q Consensus 111 I~lsA~HT~edI-d~L~~ 127 (153)
||++-.|+.+++ |+++.
T Consensus 421 i~vt~~~~~~~~A~~~v~ 438 (491)
T KOG1383|consen 421 ICVTRVHAREDVADRFVA 438 (491)
T ss_pred EEEEeeeccHHHHHHHHH
Confidence 899999998885 33443
No 272
>PRK00489 hisG ATP phosphoribosyltransferase; Reviewed
Probab=41.97 E-value=1.1e+02 Score=25.26 Aligned_cols=91 Identities=11% Similarity=-0.033 Sum_probs=60.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhccccccCCCCCCCCceEEEEeeCCCCHHHHHH
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTSIGLGVEQTALNDGLSLYESSHLRSANLWNR 124 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a~~i~~PtVP~g~~RlRI~lsA~HT~edId~ 124 (153)
..++.++.+...+..++..+.+.+...++ .+.| -..-+++.+..++...|||..-..---+.+++--.++++..
T Consensus 191 ~~~~~~~~i~~~l~~l~g~l~a~~~k~~~-~~~~-----~~~~~~~~~~~p~~~~ptv~~~~~~~~~av~~~~~~~~~~~ 264 (287)
T PRK00489 191 LDPEKQEKIDQLLTRLQGVLRARESKYLM-MNAP-----KEKLDAVIALLPGLESPTVSPLGDEGWVAVHAVVPEDLVWE 264 (287)
T ss_pred cChhHHHHHHHHHHHHHHHHHhhceEEEE-EeCC-----HHHHHHHHHhCCCCCCCcccCCCCCCeEEEEEEECHHHHHH
Confidence 45677888888888887777776655443 2222 11113444455888999995432224688888889999988
Q ss_pred HHHHHHHHHHhcCCCceeeec
Q psy5049 125 PHSPSLMAVFRGGGPGIFPLQ 145 (153)
Q Consensus 125 L~~~~L~~~~~~~~~~~~~~~ 145 (153)
+ +..+++.|..+|+-+.
T Consensus 265 ~----~~~l~~~ga~~i~~~~ 281 (287)
T PRK00489 265 L----MDKLKALGARGILVLP 281 (287)
T ss_pred H----HHHHHHcCCCeEEEec
Confidence 5 5588888888887543
No 273
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins.
Probab=41.76 E-value=25 Score=29.46 Aligned_cols=61 Identities=25% Similarity=0.212 Sum_probs=36.2
Q ss_pred HHHHHHHhHHHH---HHHhhhcccEEeecCCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHhCCCcc
Q psy5049 3 LISVLAQNTRYF---RRKLNRLGLILYVLFQAQTKPPRSHCICFISGIRRISVLAHNTRYFRRKLNRLGLIV 71 (153)
Q Consensus 3 ~~~~~~~~~~~~---~~~l~~~g~~~~~~~~~~~~p~~~~~l~~~~~~~rr~~L~~ni~~fr~~L~~~G~~~ 71 (153)
.+.+..++.||| +++|+.+|+. |||+.++.-= ...- .+-..-|.+.....-..+...|+++
T Consensus 104 ~~~va~dEarHf~ll~~rL~~lG~~-yGd~P~h~gL-----w~~~--~~t~~dl~~R~A~vp~~~EArGLD~ 167 (253)
T PF04305_consen 104 WLRVADDEARHFRLLRERLEELGSD-YGDLPAHDGL-----WEAA--EQTAHDLLARMALVPRVLEARGLDV 167 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC-CCCcchhhHH-----HHHH--HHhccCHHHHHHHHHHHHHhhCCCC
Confidence 467788899996 6999999997 8994433221 1110 1111124444455555667778775
No 274
>PRK02948 cysteine desulfurase; Provisional
Probab=41.75 E-value=40 Score=28.38 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=21.1
Q ss_pred HHHHHHHhHHHHHHHhhhcccEEee
Q psy5049 3 LISVLAQNTRYFRRKLNRLGLILYV 27 (153)
Q Consensus 3 ~~~~~~~~~~~~~~~l~~~g~~~~~ 27 (153)
..+++.++++||+++|+.+|+.++.
T Consensus 258 ~~~~~~~~~~~l~~~L~~~~~~v~~ 282 (381)
T PRK02948 258 ESLRFKELRSYFLEQIQTLPLPIEV 282 (381)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 3467889999999999999997654
No 275
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=41.66 E-value=34 Score=23.46 Aligned_cols=46 Identities=17% Similarity=0.193 Sum_probs=28.0
Q ss_pred ccccCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHH-HHHhc--CCCceeee
Q psy5049 95 IGLGVEQTALNDGLSLYESSHLRSANLWNRPHSPSLM-AVFRG--GGPGIFPL 144 (153)
Q Consensus 95 ~~i~~PtVP~g~~RlRI~lsA~HT~edId~L~~~~L~-~~~~~--~~~~~~~~ 144 (153)
.+-.||..| +.+.+..+.....++++.+.+ .+. .+.+. |.+++|.+
T Consensus 57 ~p~~YP~~~---P~i~l~~~~~~~~~~~~~l~~-~l~~~~~~~~~G~~~i~~i 105 (113)
T PF05773_consen 57 LPPGYPESP---PKISLESPKNSRNEQIEKLNK-ELEQIAEENRQGEPCIFQI 105 (113)
T ss_dssp E-SSTTSS-----EEEEEEESSSHCHHHHHHHH-HHHHHHHHSTTTS-CHHHH
T ss_pred CCCcCCCcC---CEEEEEcCCCCCHHHHHHHHH-HHHHHHHHhCCCcCHHHHH
Confidence 333777554 678888877777688888888 554 34333 56776653
No 276
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=40.80 E-value=78 Score=20.03 Aligned_cols=32 Identities=6% Similarity=-0.186 Sum_probs=24.2
Q ss_pred ceEEEEeeCCCCHHHHHHHHHHHHHHHHhcCC
Q psy5049 107 GLSLYESSHLRSANLWNRPHSPSLMAVFRGGG 138 (153)
Q Consensus 107 ~RlRI~lsA~HT~edId~L~~~~L~~~~~~~~ 138 (153)
+-++|.+....|.|+-.++++..-+.+.+.++
T Consensus 2 P~v~i~l~~grt~eqk~~l~~~it~~l~~~lg 33 (64)
T PRK01964 2 PIVQIQLLEGRPEEKIKNLIREVTEAISATLD 33 (64)
T ss_pred CEEEEEEeCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 35789999999999999999944455655543
No 277
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=40.73 E-value=2.4e+02 Score=24.56 Aligned_cols=87 Identities=11% Similarity=-0.036 Sum_probs=47.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHhC----CCcccCCCCCCeEEEEcCCc-------hHHHhcc------ccccCCCCCCCCc
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRL----GLIVYGHRDSPVVPVLVFFF-------SKVGQTS------IGLGVEQTALNDG 107 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~----G~~~~~~s~SPIiPV~~g~~-------~~~~~~a------~~i~~PtVP~g~~ 107 (153)
..+...+++.+.-.++++.|.+. +......+....+-+.+.++ ..+..+. -.+..|.-.- ..
T Consensus 314 ~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~p~~~f-~~ 392 (420)
T TIGR00700 314 ESEGLIERARQIGRLVTDRLTTLKAVDPRIGDVRGLGAMIAVELVDPGTTEPDAGLAERIATAAHAAGLLLLTCGMF-GN 392 (420)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHhhCCCEEEeeccceEEEEEEecCCCCCccHHHHHHHHHHHHHCCeEEeccCCC-CC
Confidence 34556777777778888888643 21100012233333333111 1122221 2223343122 26
Q ss_pred eEEEEeeCCCCHHHHHHHHHHHHHHH
Q psy5049 108 LSLYESSHLRSANLWNRPHSPSLMAV 133 (153)
Q Consensus 108 RlRI~lsA~HT~edId~L~~~~L~~~ 133 (153)
.+||+....+|+++|++.++ .+++.
T Consensus 393 ~lRl~p~l~~~~~~l~~~~~-~l~~~ 417 (420)
T TIGR00700 393 IIRFLPPLTIGDELLSEGLD-ILCAI 417 (420)
T ss_pred EEEEECCCCcCHHHHHHHHH-HHHHH
Confidence 89999988899999999887 66554
No 278
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=40.49 E-value=27 Score=28.72 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=21.8
Q ss_pred HHHHHHHhHHHHHHHhhhc-ccEEeec
Q psy5049 3 LISVLAQNTRYFRRKLNRL-GLILYVL 28 (153)
Q Consensus 3 ~~~~~~~~~~~~~~~l~~~-g~~~~~~ 28 (153)
.+++..+|.+|+++.|... |+.+++.
T Consensus 233 ~~~~~~~~~~~~~~~L~~~~g~~~~~~ 259 (352)
T cd00616 233 IIARRREIAERYKELLADLPGIRLPDV 259 (352)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccCCCC
Confidence 3567889999999999995 8998775
No 279
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=40.02 E-value=51 Score=27.57 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=21.5
Q ss_pred HHHHHHHhHHHHHHHhhhcccEEee
Q psy5049 3 LISVLAQNTRYFRRKLNRLGLILYV 27 (153)
Q Consensus 3 ~~~~~~~~~~~~~~~l~~~g~~~~~ 27 (153)
.++++.++++++++.|.++||.+++
T Consensus 266 ~~~~~~~~~~~l~~~L~~~g~~~~~ 290 (368)
T PRK13479 266 RGARYANNQRTLVAGMRALGFEPLL 290 (368)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcccC
Confidence 3567888999999999999999865
No 280
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=39.22 E-value=57 Score=28.22 Aligned_cols=22 Identities=14% Similarity=0.105 Sum_probs=18.8
Q ss_pred HHHHHHHhHHHHHHHhhhcccE
Q psy5049 3 LISVLAQNTRYFRRKLNRLGLI 24 (153)
Q Consensus 3 ~~~~~~~~~~~~~~~l~~~g~~ 24 (153)
.+.++.+|.+||+++|...||.
T Consensus 263 ~~~~l~~~~~~l~~~L~~~~~~ 284 (392)
T PLN03227 263 LLNRLHDSIANLYSTLTNSSHP 284 (392)
T ss_pred HHHHHHHHHHHHHHHHHhcCCc
Confidence 5678899999999999987664
No 281
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=39.08 E-value=56 Score=27.29 Aligned_cols=25 Identities=16% Similarity=0.126 Sum_probs=21.4
Q ss_pred HHHHHHhHHHHHHHhhhcccEEeec
Q psy5049 4 ISVLAQNTRYFRRKLNRLGLILYVL 28 (153)
Q Consensus 4 ~~~~~~~~~~~~~~l~~~g~~~~~~ 28 (153)
.+++.++++||++.|..+|+.+++.
T Consensus 266 ~~~~~~~~~~l~~~L~~~g~~~~~~ 290 (363)
T TIGR02326 266 HQRYQQNQKTLVAGMRALGFEPLLD 290 (363)
T ss_pred HHHHHHHHHHHHHHHHHcCCeeccC
Confidence 4678899999999999999998653
No 282
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=38.88 E-value=92 Score=19.64 Aligned_cols=33 Identities=15% Similarity=-0.113 Sum_probs=25.5
Q ss_pred ceEEEEeeCCCCHHHHHHHHHHHHHHHHhcCCC
Q psy5049 107 GLSLYESSHLRSANLWNRPHSPSLMAVFRGGGP 139 (153)
Q Consensus 107 ~RlRI~lsA~HT~edId~L~~~~L~~~~~~~~~ 139 (153)
+.++|.+....|+||..+|++...+++.+..+-
T Consensus 2 P~i~i~~~~Grs~EqK~~L~~~it~a~~~~~~~ 34 (60)
T PRK02289 2 PFVRIDLFEGRSQEQKNALAREVTEVVSRIAKA 34 (60)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCc
Confidence 357899999999999999999444666666544
No 283
>PRK10534 L-threonine aldolase; Provisional
Probab=38.63 E-value=78 Score=26.01 Aligned_cols=54 Identities=7% Similarity=0.169 Sum_probs=33.2
Q ss_pred HHHHHHHhHHHHHHHhhhcccEEeecCCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHhCCCcc
Q psy5049 3 LISVLAQNTRYFRRKLNRLGLILYVLFQAQTKPPRSHCICFISGIRRISVLAHNTRYFRRKLNRLGLIV 71 (153)
Q Consensus 3 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~~~l~~~~~~~rr~~L~~ni~~fr~~L~~~G~~~ 71 (153)
.+++..+|++|+.++|.+.|+.++ +| -++++--.-.+ .....+.+.|.+.|+.+
T Consensus 248 ~~~~~~~~r~~l~~~L~~~g~~~~-------~~-~~nfv~~~~~~-------~~~~~~~~~l~~~gi~v 301 (333)
T PRK10534 248 RLQEDHDNAAWLAEQLREAGADVM-------RQ-DTNMLFVRVGE-------EQAAALGEYMRERNVLI 301 (333)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccC-------CC-CceEEEEECCc-------hhHHHHHHHHHHcCeee
Confidence 345566788899999999999863 23 23332111111 12345567888888766
No 284
>PRK06105 aminotransferase; Provisional
Probab=38.63 E-value=1.4e+02 Score=26.66 Aligned_cols=86 Identities=8% Similarity=-0.017 Sum_probs=50.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhCC-CcccC--CCCCCeEEEEcCCc-----------hHHHhcc------ccccCCCCC
Q psy5049 44 ISGIRRISVLAHNTRYFRRKLNRLG-LIVYG--HRDSPVVPVLVFFF-----------SKVGQTS------IGLGVEQTA 103 (153)
Q Consensus 44 ~~~~~rr~~L~~ni~~fr~~L~~~G-~~~~~--~s~SPIiPV~~g~~-----------~~~~~~a------~~i~~PtVP 103 (153)
...++..++++++.++|++.|+++. +...+ .+..-++.|-+-.+ ..+..+. -.+..|.
T Consensus 342 i~~~~l~~~v~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~a~~i~~~~~~~Gvl~~~~-- 419 (460)
T PRK06105 342 IEERDLVGNAAERGARLQARLRALADHPLVGEVRGVGLIAAVELVADKATKTPFEPPGKVGARANAAAHEHGVISRAM-- 419 (460)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecceEEEEEEecCcccCCCCCchhHHHHHHHHHHHHCCeEEEec--
Confidence 3456789999999999999998651 11000 11122333433211 1111221 2233442
Q ss_pred CCCceEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049 104 LNDGLSLYESSHLRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 104 ~g~~RlRI~lsA~HT~edId~L~~~~L~~~~ 134 (153)
| ..+|++..-.+|++|||.+++ .++...
T Consensus 420 -g-~~i~l~Ppl~it~~eid~~~~-~l~~~l 447 (460)
T PRK06105 420 -G-DTLAFCPPLIITAAQVDEMVD-RFGRAL 447 (460)
T ss_pred -C-CEEEEECCCccCHHHHHHHHH-HHHHHH
Confidence 3 479999889999999999888 664433
No 285
>PRK07036 hypothetical protein; Provisional
Probab=37.85 E-value=1.6e+02 Score=26.40 Aligned_cols=85 Identities=14% Similarity=0.025 Sum_probs=49.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHhCC-CcccC--CCCCCeEEEEcCCch-----------HHHhcc-----c-cccCCCCCC
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRLG-LIVYG--HRDSPVVPVLVFFFS-----------KVGQTS-----I-GLGVEQTAL 104 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~G-~~~~~--~s~SPIiPV~~g~~~-----------~~~~~a-----~-~i~~PtVP~ 104 (153)
+.+++.+++++.-.+|++.|+++. +...+ .+..-++-|.+.++. .+..+. . .+..|.
T Consensus 346 ~~~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~--- 422 (466)
T PRK07036 346 EREGLCEHVREVGPYFEERLASLRELPLVGDVRGDHLMACVECVADKGSKALLPEDIAIGQRIDRHCQERGLLVRPL--- 422 (466)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHhccCCCEEEEEeeceEEEEEEccCccccCCCCchhHHHHHHHHHHHHCCcEEeec---
Confidence 456789999999999999997531 11100 112234444442211 111221 2 223332
Q ss_pred CCceEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049 105 NDGLSLYESSHLRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 105 g~~RlRI~lsA~HT~edId~L~~~~L~~~~ 134 (153)
| ..+|++..-.+|++|||++++ ++++..
T Consensus 423 ~-~~~~l~Ppl~it~~~id~~~~-~l~~al 450 (466)
T PRK07036 423 E-HLCVLSPPLIITRAQIDEIVA-ILRAAI 450 (466)
T ss_pred C-CEEEEeCCCcCCHHHHHHHHH-HHHHHH
Confidence 3 468888888899999999988 775444
No 286
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=36.92 E-value=96 Score=19.20 Aligned_cols=32 Identities=13% Similarity=-0.031 Sum_probs=24.3
Q ss_pred ceEEEEeeCCCCHHHHHHHHHHHHHHHHhcCC
Q psy5049 107 GLSLYESSHLRSANLWNRPHSPSLMAVFRGGG 138 (153)
Q Consensus 107 ~RlRI~lsA~HT~edId~L~~~~L~~~~~~~~ 138 (153)
+-++|.+....|+|+-.++++..-+.+.+.++
T Consensus 2 P~i~i~~~~Grs~eqk~~l~~~it~~l~~~~~ 33 (61)
T PRK02220 2 PYVHIKLIEGRTEEQLKALVKDVTAAVSKNTG 33 (61)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 35788888999999999999944455666544
No 287
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=36.79 E-value=41 Score=28.51 Aligned_cols=24 Identities=13% Similarity=0.250 Sum_probs=21.2
Q ss_pred HHHHHHHhHHHHHHHhhhcccEEe
Q psy5049 3 LISVLAQNTRYFRRKLNRLGLILY 26 (153)
Q Consensus 3 ~~~~~~~~~~~~~~~l~~~g~~~~ 26 (153)
..+++.+|++||++.|...||.++
T Consensus 280 ~~~~~~~~~~~l~~~L~~~g~~~~ 303 (402)
T cd00378 280 YAKQVVENAKALAEALKERGFKVV 303 (402)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEe
Confidence 357789999999999999999985
No 288
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=36.67 E-value=48 Score=21.96 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=20.4
Q ss_pred HHHHHHHhHHHHHHHhhhcccEEe
Q psy5049 3 LISVLAQNTRYFRRKLNRLGLILY 26 (153)
Q Consensus 3 ~~~~~~~~~~~~~~~l~~~g~~~~ 26 (153)
....|.+|...++++|...||.+-
T Consensus 49 ~~~~L~~~~~~L~~~L~~~G~~~~ 72 (85)
T PF02120_consen 49 TKELLRQNLPELKERLQAQGLEVV 72 (85)
T ss_dssp HHHHHHHTHHHHHHHHHTTT-EEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCeE
Confidence 457789999999999999999984
No 289
>PRK09064 5-aminolevulinate synthase; Validated
Probab=36.08 E-value=31 Score=29.47 Aligned_cols=24 Identities=8% Similarity=0.117 Sum_probs=21.0
Q ss_pred HHHHHHhHHHHHHHhhhcccEEee
Q psy5049 4 ISVLAQNTRYFRRKLNRLGLILYV 27 (153)
Q Consensus 4 ~~~~~~~~~~~~~~l~~~g~~~~~ 27 (153)
.+++.+|++||+++|.++||.+++
T Consensus 302 ~~~~~~~~~~l~~~L~~~g~~~~~ 325 (407)
T PRK09064 302 RERHQERAAKLKAALDAAGIPVMP 325 (407)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCC
Confidence 467889999999999999998755
No 290
>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]
Probab=35.89 E-value=1.8e+02 Score=26.80 Aligned_cols=79 Identities=15% Similarity=0.090 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchH--------HHhcc----------ccccCCCCCCCCceEEEEe
Q psy5049 52 VLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSK--------VGQTS----------IGLGVEQTALNDGLSLYES 113 (153)
Q Consensus 52 ~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~--------~~~~a----------~~i~~PtVP~g~~RlRI~l 113 (153)
.---|++|+.++|+. .|++.-.+..++-.=++.+... +..++ +.+-||-+= .+-+=|-.
T Consensus 349 ~AvLNANYia~rL~~-~y~~~y~~~~~~~HE~ild~r~l~~~~Gv~~~DvAKrLlD~GfHaPT~~FPliV--~~tLMIEP 425 (496)
T COG1003 349 VAVLNANYIARRLKG-YYPVPYTGENRVAHECILDARPLKKETGVRALDVAKRLLDYGFHAPTMYFPLIV--AGTLMIEP 425 (496)
T ss_pred HHHHhHHHHHHHhhh-cCccccCCCCcceeEEEeechHhHhhcCCcHHHHHHHHHhcCCCCCcccCcccc--ccceeecC
Confidence 334689999999996 3443111221333333333331 12222 444555111 35677888
Q ss_pred eCCCCHHHHHHHHHHHHHHHH
Q psy5049 114 SHLRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 114 sA~HT~edId~L~~~~L~~~~ 134 (153)
+-.-|++++|++++ ++.++.
T Consensus 426 TEsEsk~eLDrf~d-ami~I~ 445 (496)
T COG1003 426 TESESKEELDRFID-AMIAIR 445 (496)
T ss_pred CCCCCHHHHHHHHH-HHHHHH
Confidence 89999999999999 665444
No 291
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=35.84 E-value=1.1e+02 Score=19.01 Aligned_cols=32 Identities=9% Similarity=-0.169 Sum_probs=25.0
Q ss_pred eEEEEee-CCCCHHHHHHHHHHHHHHHHhcCCC
Q psy5049 108 LSLYESS-HLRSANLWNRPHSPSLMAVFRGGGP 139 (153)
Q Consensus 108 RlRI~ls-A~HT~edId~L~~~~L~~~~~~~~~ 139 (153)
-++|.+. ...|.|+-..+++.+.+.+.+.+|.
T Consensus 2 ~i~i~i~~~grt~eqK~~l~~~it~~l~~~lg~ 34 (63)
T TIGR00013 2 FVNIYILKEGRTDEQKRQLIEGVTEAMAETLGA 34 (63)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4678888 7899999999999555677766543
No 292
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=35.61 E-value=1e+02 Score=18.67 Aligned_cols=32 Identities=13% Similarity=-0.180 Sum_probs=24.6
Q ss_pred eEEEEeeCCCCHHHHHHHHHHHHHHHHhcCCC
Q psy5049 108 LSLYESSHLRSANLWNRPHSPSLMAVFRGGGP 139 (153)
Q Consensus 108 RlRI~lsA~HT~edId~L~~~~L~~~~~~~~~ 139 (153)
-++|.+....|+|+-.+++++..+.+.+..|.
T Consensus 2 ~i~i~~~~grt~eqk~~l~~~i~~~l~~~~g~ 33 (58)
T cd00491 2 FVQIYILEGRTDEQKRELIERVTEAVSEILGA 33 (58)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCc
Confidence 47889999999999999999444566666543
No 293
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=34.92 E-value=3.5e+02 Score=24.58 Aligned_cols=102 Identities=13% Similarity=0.020 Sum_probs=63.9
Q ss_pred HHHHHHhhhcccEEeecCCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHH
Q psy5049 12 RYFRRKLNRLGLILYVLFQAQTKPPRSHCICFISGIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVG 91 (153)
Q Consensus 12 ~~~~~~l~~~g~~~~~~~~~~~~p~~~~~l~~~~~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~ 91 (153)
..|=+...+.|+.. +.| ..+-.+++.+.+. .++.+++.|..+...++.+ +-+.+.+.
T Consensus 89 ~~fae~~~~~gl~f-------iGP----------~~~~i~~mgdK~~-ar~~~~~aGVP~vpgs~~~-----~~~~ee~~ 145 (449)
T COG0439 89 AAFAEACAEAGLTF-------IGP----------SAEAIRRMGDKIT-ARRLMAKAGVPVVPGSDGA-----VADNEEAL 145 (449)
T ss_pred HHHHHHHHHcCCee-------eCc----------CHHHHHHhhhHHH-HHHHHHHcCCCcCCCCCCC-----cCCHHHHH
Confidence 45778888888774 444 3455555555544 5788889998764333322 33445666
Q ss_pred hcc-----ccccCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHhcCCCc
Q psy5049 92 QTS-----IGLGVEQTALNDGLSLYESSHLRSANLWNRPHSPSLMAVFRGGGPG 140 (153)
Q Consensus 92 ~~a-----~~i~~PtVP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~~~~~~ 140 (153)
+++ +.+.-|+-=-|.-.+|+| ++++++.+.+..+.......++.+
T Consensus 146 ~~a~~iGyPVivKa~~GgGg~G~r~v----~~~~el~~a~~~~~~ea~~~fg~~ 195 (449)
T COG0439 146 AIAEEIGYPVIVKAAAGGGGRGMRVV----RNEEELEAAFEAARGEAEAAFGNP 195 (449)
T ss_pred HHHHHcCCCEEEEECCCCCcccEEEE----CCHHHHHHHHHHHHHHHHHhcCCC
Confidence 666 333444445667789998 889999998884555555444444
No 294
>PLN03032 serine decarboxylase; Provisional
Probab=34.56 E-value=48 Score=29.02 Aligned_cols=27 Identities=22% Similarity=0.376 Sum_probs=23.9
Q ss_pred hHHHHHHHhHHHHHHHhhhcccEEeec
Q psy5049 2 RLISVLAQNTRYFRRKLNRLGLILYVL 28 (153)
Q Consensus 2 ~~~~~~~~~~~~~~~~l~~~g~~~~~~ 28 (153)
+.+++.-++++||.++|++.|+.+.++
T Consensus 295 ~~~~~~~~~a~~l~~~l~~~~~~~~~~ 321 (374)
T PLN03032 295 RDVQHCMRNAHYLKDRLTEAGLTCRLN 321 (374)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcEEEC
Confidence 457888999999999999999998776
No 295
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=34.43 E-value=82 Score=25.74 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=21.4
Q ss_pred HHHHHHHhHHHHHHHhhhcccEEeec
Q psy5049 3 LISVLAQNTRYFRRKLNRLGLILYVL 28 (153)
Q Consensus 3 ~~~~~~~~~~~~~~~l~~~g~~~~~~ 28 (153)
..++..++++||++.|.++|+.+.+.
T Consensus 260 ~~~~~~~~~~~~~~~L~~~g~~~~~~ 285 (355)
T TIGR03301 260 RIARYRRNRELLVDGLRALGFQPLLP 285 (355)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeeecC
Confidence 45677889999999999999987543
No 296
>PRK07568 aspartate aminotransferase; Provisional
Probab=34.38 E-value=2.8e+02 Score=23.31 Aligned_cols=85 Identities=7% Similarity=-0.059 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcC--CchHHHhcc---------ccccCCC-----CCC-CCce
Q psy5049 47 IRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVF--FFSKVGQTS---------IGLGVEQ-----TAL-NDGL 108 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g--~~~~~~~~a---------~~i~~Pt-----VP~-g~~R 108 (153)
.+.++.+.++..++.+.|.+. |+.+........+-+-+. +........ .....|. .|. +..-
T Consensus 288 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~~~~~~~l~~~~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~ 367 (397)
T PRK07568 288 DEVREEYKKRRDILYEELNKIPGVVCEKPKGAFYIIAKLPVDDAEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNE 367 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCceecCCCcceEEEEecCCCCHHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCe
Confidence 456777888889999999876 443321122222223232 222222211 1112222 121 3468
Q ss_pred EEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049 109 SLYESSHLRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 109 lRI~lsA~HT~edId~L~~~~L~~~~ 134 (153)
+|++++ .++++++..++ .|....
T Consensus 368 iRls~~--~~~~~~~~~~~-~l~~~l 390 (397)
T PRK07568 368 IRIAYV--LNEEDLKRAME-ILKEAL 390 (397)
T ss_pred EEEEEe--CCHHHHHHHHH-HHHHHH
Confidence 999997 45799999877 665443
No 297
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=34.12 E-value=70 Score=26.52 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.0
Q ss_pred HHHHHHHhHHHHHHHhhhcccEE
Q psy5049 3 LISVLAQNTRYFRRKLNRLGLIL 25 (153)
Q Consensus 3 ~~~~~~~~~~~~~~~l~~~g~~~ 25 (153)
..++..++++||+++|.+.||.+
T Consensus 284 ~~~~~~~~~~~l~~~L~~~g~~~ 306 (371)
T PRK13520 284 VVERCMENTRWLAEELKERGFEP 306 (371)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEE
Confidence 45678899999999999999984
No 298
>KOG0461|consensus
Probab=33.73 E-value=78 Score=28.68 Aligned_cols=38 Identities=24% Similarity=0.265 Sum_probs=32.3
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCc
Q psy5049 46 GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFF 87 (153)
Q Consensus 46 ~~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~ 87 (153)
+.+|..++.+....+++.|...||+ +.+||++|-..+.
T Consensus 137 E~qr~ski~k~~kk~~KtLe~t~f~----g~~PI~~vsa~~G 174 (522)
T KOG0461|consen 137 ENQRASKIEKSAKKVRKTLESTGFD----GNSPIVEVSAADG 174 (522)
T ss_pred chhhhhHHHHHHHHHHHHHHhcCcC----CCCceeEEecCCC
Confidence 4678889999999999999999974 5589999988664
No 299
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=33.69 E-value=76 Score=27.13 Aligned_cols=38 Identities=18% Similarity=0.425 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhC-CCcccC--CCCCCeEEEEc
Q psy5049 47 IRRISVLAHNTRYFRRKLNRL-GLIVYG--HRDSPVVPVLV 84 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~--~s~SPIiPV~~ 84 (153)
.++.++.+++.+++++.|.+. |+.+.+ .+.++|+++-.
T Consensus 279 ~~~~~~~~~~~~~l~~~L~~l~g~~~~~~~~~~~~i~~~~~ 319 (387)
T PRK09331 279 VKRWDEEVKKARWFVDELEKIEGFKQLGEKPRNHDLMKFET 319 (387)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEeccCcCcCCeEEEeC
Confidence 345667789999999999999 887653 23466665543
No 300
>PTZ00377 alanine aminotransferase; Provisional
Probab=33.41 E-value=3.4e+02 Score=23.98 Aligned_cols=27 Identities=0% Similarity=-0.240 Sum_probs=19.7
Q ss_pred CCceEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049 105 NDGLSLYESSHLRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 105 g~~RlRI~lsA~HT~edId~L~~~~L~~~~ 134 (153)
+..-+|+++. .++|+++..++ .|..+.
T Consensus 447 ~~~~~Rls~~--~~~e~l~~~l~-rl~~~~ 473 (481)
T PTZ00377 447 GTYHFRITIL--PPEEQIEEMVK-KIKEFH 473 (481)
T ss_pred CCCEEEEEEC--CCHHHHHHHHH-HHHHHH
Confidence 4567999997 66888888776 665443
No 301
>PLN02409 serine--glyoxylate aminotransaminase
Probab=32.97 E-value=91 Score=26.86 Aligned_cols=25 Identities=24% Similarity=0.141 Sum_probs=21.4
Q ss_pred HHHHHHhHHHHHHHhhhcccEEeec
Q psy5049 4 ISVLAQNTRYFRRKLNRLGLILYVL 28 (153)
Q Consensus 4 ~~~~~~~~~~~~~~l~~~g~~~~~~ 28 (153)
.++..+.++|+++.|..+||.+++.
T Consensus 275 ~~~~~~l~~~l~~~L~~~g~~~~~~ 299 (401)
T PLN02409 275 IARHARLGEATRLAVEAWGLKLCTK 299 (401)
T ss_pred HHHHHHHHHHHHHHHHHcCCeeccC
Confidence 3567788999999999999999874
No 302
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=32.28 E-value=2.7e+02 Score=23.71 Aligned_cols=25 Identities=4% Similarity=-0.136 Sum_probs=19.2
Q ss_pred ceEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049 107 GLSLYESSHLRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 107 ~RlRI~lsA~HT~edId~L~~~~L~~~~ 134 (153)
.-+||+++. ++++++..++ .|..+.
T Consensus 385 ~~iRis~~~--~~~~l~~~i~-~l~~~~ 409 (416)
T PRK09440 385 QCIRMNYVQ--DDEEIEKGIA-ILAEEV 409 (416)
T ss_pred ceEEEEecC--CHHHHHHHHH-HHHHHH
Confidence 479999984 7899999887 665544
No 303
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=31.81 E-value=3.2e+02 Score=23.60 Aligned_cols=38 Identities=13% Similarity=-0.042 Sum_probs=27.0
Q ss_pred CCCCCCccccccc--ccchHHHHHHHHHHHHHHHHHHhCC
Q psy5049 31 AQTKPPRSHCICF--ISGIRRISVLAHNTRYFRRKLNRLG 68 (153)
Q Consensus 31 ~~~~p~~~~~l~~--~~~~~rr~~L~~ni~~fr~~L~~~G 68 (153)
+.+.|+-+..... ..-+.++++..+|+.++.+.|.+..
T Consensus 239 ~~l~~~~a~l~l~~L~tl~~r~~~~~~na~~la~~L~~~p 278 (391)
T TIGR01328 239 SVISPFDAWLILRGLKTLNIRMKRHSENAMKVAEYLKSHP 278 (391)
T ss_pred CCCCcHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4467764444222 3457789999999999999998764
No 304
>PLN02390 molybdopterin synthase catalytic subunit
Probab=31.74 E-value=1.7e+02 Score=21.44 Aligned_cols=46 Identities=9% Similarity=0.029 Sum_probs=35.9
Q ss_pred CCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHhcCCCceeeeccccc
Q psy5049 101 QTALNDGLSLYESSHLRSANLWNRPHSPSLMAVFRGGGPGIFPLQHRAD 149 (153)
Q Consensus 101 tVP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~~~~~~~~~~~~~~~ 149 (153)
.++.|+.-+-+.++|.|.++-++..-. +++.++.. -+|.-.++..|
T Consensus 63 ~l~vge~~v~v~v~s~HR~~Af~A~~~-~id~lK~~--vPIWKkE~~~d 108 (111)
T PLN02390 63 PVPVGETSVFVAVSSVHRADALDACKF-LIDELKAS--VPIWKKEVYDD 108 (111)
T ss_pred cccCCCEEEEEEEECCCHHHHHHHHHH-HHHHHhhc--CCEEEeeecCC
Confidence 468889999999999999999998777 77777765 45555555444
No 305
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=31.66 E-value=71 Score=28.85 Aligned_cols=44 Identities=16% Similarity=0.198 Sum_probs=34.8
Q ss_pred cccchHHHHHHHHHHHHHHHHHHhCC-CcccCCCCCCeEEEEcCC
Q psy5049 43 FISGIRRISVLAHNTRYFRRKLNRLG-LIVYGHRDSPVVPVLVFF 86 (153)
Q Consensus 43 ~~~~~~rr~~L~~ni~~fr~~L~~~G-~~~~~~s~SPIiPV~~g~ 86 (153)
.+.+.++.++..++++|+.+.+.+.| |.+...+..||+.+-..+
T Consensus 337 ~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~p~l~~V~fr~~~ 381 (460)
T COG0076 337 REGYRKLLDRTLELARYLAEELEKLGDFELVNEPELPIVAFRLKD 381 (460)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhCCCcEeecCCccceEEEEcCC
Confidence 35668888888899999999999997 777666667777776633
No 306
>PRK02769 histidine decarboxylase; Provisional
Probab=31.29 E-value=51 Score=28.74 Aligned_cols=27 Identities=11% Similarity=0.130 Sum_probs=23.3
Q ss_pred hHHHHHHHhHHHHHHHhhhcccEEeec
Q psy5049 2 RLISVLAQNTRYFRRKLNRLGLILYVL 28 (153)
Q Consensus 2 ~~~~~~~~~~~~~~~~l~~~g~~~~~~ 28 (153)
+.+....++++||+++|++.|+.+.++
T Consensus 292 ~~~~~~~~la~~l~~~L~~~g~~~~~~ 318 (380)
T PRK02769 292 QRVQHCLDMAQYAVDRLQANGIPAWRN 318 (380)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEcC
Confidence 346778899999999999999998765
No 307
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=30.80 E-value=3.3e+02 Score=22.98 Aligned_cols=28 Identities=14% Similarity=-0.047 Sum_probs=19.7
Q ss_pred CceEEEEeeCCCCHHHHHHHHHHHHHHHHhcC
Q psy5049 106 DGLSLYESSHLRSANLWNRPHSPSLMAVFRGG 137 (153)
Q Consensus 106 ~~RlRI~lsA~HT~edId~L~~~~L~~~~~~~ 137 (153)
..-+||++.. .+++++.++ .|+.+.+..
T Consensus 345 ~~~lRls~~~---~~~~~~~l~-~l~~~l~~~ 372 (374)
T PRK02610 345 GGGLRITIGT---PEENQRTLE-RLQAALTQL 372 (374)
T ss_pred CCeEEEeCCC---HHHHHHHHH-HHHHHHhhc
Confidence 3579999874 577888877 776665443
No 308
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=30.68 E-value=3.5e+02 Score=23.22 Aligned_cols=85 Identities=9% Similarity=0.009 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcCC--------chHHHh-cc----ccccCCCCC-CCCceEEE
Q psy5049 47 IRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVFF--------FSKVGQ-TS----IGLGVEQTA-LNDGLSLY 111 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g~--------~~~~~~-~a----~~i~~PtVP-~g~~RlRI 111 (153)
.+.++++.++..++.+.|++. |+.+.....+.-+=+-+.. .....+ +. +.++ |.-. ....-+||
T Consensus 308 ~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~gg~f~~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~-pg~~f~~~~~iRi 386 (412)
T PTZ00433 308 EQIVAKLEEGAMVLYNHIGECIGLSPTMPRGSMFLMSRLDLEKFRDIKSDVEFYEKLLEEENVQVL-PGEIFHMPGFTRL 386 (412)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcccCCCeeEEEEEEechhhcCCCCCHHHHHHHHHHhcCEEEe-CccccCCCCeEEE
Confidence 456677888888888888864 5543221222222221221 111111 11 2222 2111 11358999
Q ss_pred EeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049 112 ESSHLRSANLWNRPHSPSLMAVFR 135 (153)
Q Consensus 112 ~lsA~HT~edId~L~~~~L~~~~~ 135 (153)
+++. .+++++..++ .+..+.+
T Consensus 387 s~~~--~~e~l~~al~-~l~~~~~ 407 (412)
T PTZ00433 387 TISR--PVEVLREAVE-RIKAFCE 407 (412)
T ss_pred EecC--CHHHHHHHHH-HHHHHHH
Confidence 9975 4788888776 5555443
No 309
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=30.53 E-value=3.4e+02 Score=23.02 Aligned_cols=82 Identities=6% Similarity=-0.139 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcC-CchHH-Hhcc----ccc----cC----CCCCCCCceEEEE
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVF-FFSKV-GQTS----IGL----GV----EQTALNDGLSLYE 112 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g-~~~~~-~~~a----~~i----~~----PtVP~g~~RlRI~ 112 (153)
.+.++.++++...+.+.|++. +.+...+.+.-+-+-+. +.... ..+. +.+ .| ...+.+...+||+
T Consensus 297 ~~~~~~~~~~~~~~~~~L~~~-~~~~~p~~g~f~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~ 375 (396)
T PRK09147 297 RENRALYREKFDAVTPILAPV-LDVQLPDAGFYLWAKVPGDDTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIA 375 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-cCCCCCCeeEEEEEECCCCHHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEE
Confidence 445677777777777777764 43321222332222222 22222 1111 111 11 0113456789999
Q ss_pred eeCCCCHHHHHHHHHHHHHH
Q psy5049 113 SSHLRSANLWNRPHSPSLMA 132 (153)
Q Consensus 113 lsA~HT~edId~L~~~~L~~ 132 (153)
++. ++++++..++ .+..
T Consensus 376 ~~~--~~~~l~~~l~-rl~~ 392 (396)
T PRK09147 376 LVA--PLAECVEAAE-RIVD 392 (396)
T ss_pred ecC--CHHHHHHHHH-HHHH
Confidence 985 4778887665 4443
No 310
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=30.20 E-value=47 Score=27.11 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=20.0
Q ss_pred HHHHHHHhHHHHHHHhhhcccEE
Q psy5049 3 LISVLAQNTRYFRRKLNRLGLIL 25 (153)
Q Consensus 3 ~~~~~~~~~~~~~~~l~~~g~~~ 25 (153)
.++++.+|.+||++.|.++|+.+
T Consensus 249 ~~~~~~~~~~~l~~~L~~~~~~~ 271 (338)
T cd06502 249 RLRHDHEMARRLAEALEELGGLE 271 (338)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCc
Confidence 45788899999999999999864
No 311
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=29.33 E-value=63 Score=26.48 Aligned_cols=26 Identities=15% Similarity=0.188 Sum_probs=21.0
Q ss_pred HHHHHHHhHHHHHHHhhhc-ccEEeec
Q psy5049 3 LISVLAQNTRYFRRKLNRL-GLILYVL 28 (153)
Q Consensus 3 ~~~~~~~~~~~~~~~l~~~-g~~~~~~ 28 (153)
.+++..++++||++.|.++ |+.+++.
T Consensus 249 ~~~~~~~~~~~l~~~L~~~~~~~~~~~ 275 (345)
T cd06450 249 HIDRIVDLAKYLAELIRADPGFELLGE 275 (345)
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEecC
Confidence 4577788999999999987 7877654
No 312
>PRK08637 hypothetical protein; Provisional
Probab=28.97 E-value=3.6e+02 Score=22.86 Aligned_cols=28 Identities=11% Similarity=-0.105 Sum_probs=21.0
Q ss_pred CCceEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049 105 NDGLSLYESSHLRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 105 g~~RlRI~lsA~HT~edId~L~~~~L~~~~ 134 (153)
+..-+||+++. +++++++..++ .+..+.
T Consensus 357 ~~~~iRi~~~~-~~~~~i~~~~~-~l~~~~ 384 (388)
T PRK08637 357 NETDLRIAFSC-VEEEDIPELFD-SIYKAI 384 (388)
T ss_pred cCCceEEEeec-CCHHHHHHHHH-HHHHHH
Confidence 45679999988 77899888776 554443
No 313
>KOG0629|consensus
Probab=28.52 E-value=3e+02 Score=25.50 Aligned_cols=25 Identities=8% Similarity=-0.012 Sum_probs=21.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHhCCC
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRLGL 69 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~G~ 69 (153)
..++..+++.++++||.+++++.+-
T Consensus 391 Gfe~~v~k~~~lA~yl~~~lrer~~ 415 (510)
T KOG0629|consen 391 GFEAQVDKCLRLAEYLYDRLREREG 415 (510)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4478899999999999999998763
No 314
>PRK06207 aspartate aminotransferase; Provisional
Probab=28.48 E-value=3.8e+02 Score=22.99 Aligned_cols=84 Identities=10% Similarity=-0.056 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcCC----chHHHh-cc---ccccCCCC---CCCCceEEEEee
Q psy5049 47 IRRISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVFF----FSKVGQ-TS---IGLGVEQT---ALNDGLSLYESS 114 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g~----~~~~~~-~a---~~i~~PtV---P~g~~RlRI~ls 114 (153)
.+.+++.+++..++.+.|++. |+.+.....+.-+-+-+.. .....+ +. .....|.- +.+..-+||+++
T Consensus 304 ~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~gg~fl~~~l~~~~~~~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris~~ 383 (405)
T PRK06207 304 KDRIARHQAIRDDLLRVLRGVEGVFVRAPQAGSYLFPRLPRLAVSLHDFVKILRLQAGVIVTPGTEFSPHTADSIRLNFS 383 (405)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCceecCCCeeEEEEEeCcccCCCHHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEEec
Confidence 445666667777777888765 5543211112222222221 111111 11 11112221 224568999998
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q psy5049 115 HLRSANLWNRPHSPSLMAV 133 (153)
Q Consensus 115 A~HT~edId~L~~~~L~~~ 133 (153)
. ++++++..++ .|...
T Consensus 384 ~--~~~~l~~al~-rl~~~ 399 (405)
T PRK06207 384 Q--DHAAAVAAAE-RIAQL 399 (405)
T ss_pred C--CHHHHHHHHH-HHHHH
Confidence 5 6888888666 55443
No 315
>PF13876 Phage_gp49_66: Phage protein (N4 Gp49/phage Sf6 gene 66) family
Probab=28.19 E-value=66 Score=22.45 Aligned_cols=39 Identities=10% Similarity=0.018 Sum_probs=25.4
Q ss_pred hcccEEeecCCCCCCCCcccc--ccc-c-cchHHHHHHHHHHHHHH
Q psy5049 20 RLGLILYVLFQAQTKPPRSHC--ICF-I-SGIRRISVLAHNTRYFR 61 (153)
Q Consensus 20 ~~g~~~~~~~~~~~~p~~~~~--l~~-~-~~~~rr~~L~~ni~~fr 61 (153)
+-||.|.|. ||-+.| +++ .++ + ......+++|+.-.|..
T Consensus 34 ~NGF~V~g~-SAcvdp--~nfD~eiG~~iA~~~A~~kiW~LeGY~L 76 (81)
T PF13876_consen 34 KNGFTVTGE-SACVDP--ENFDAEIGRKIARENAVNKIWELEGYLL 76 (81)
T ss_pred CCCcEEEEe-EccCCh--HHcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 469999875 666777 444 111 1 33677788888877754
No 316
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=27.86 E-value=4e+02 Score=23.07 Aligned_cols=99 Identities=13% Similarity=0.026 Sum_probs=58.0
Q ss_pred CCCCccccccc--ccchHHHHHHHHHHHHHHHHHHhCCC-c-c-c-C---C-----------CCCCeEEEEc-CCchHHH
Q psy5049 33 TKPPRSHCICF--ISGIRRISVLAHNTRYFRRKLNRLGL-I-V-Y-G---H-----------RDSPVVPVLV-FFFSKVG 91 (153)
Q Consensus 33 ~~p~~~~~l~~--~~~~~rr~~L~~ni~~fr~~L~~~G~-~-~-~-~---~-----------s~SPIiPV~~-g~~~~~~ 91 (153)
+.|+-+..... ..-+.|.++..+|...+.+.|.+... . + + + . +.+.++.+-+ ++.+.+.
T Consensus 246 ~s~~~A~~~l~~L~tl~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~ 325 (398)
T PRK07504 246 LSPFNAWTLLKGLETLPVRVRQQTESAAAIADFLAGHPKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELKGGKEAAF 325 (398)
T ss_pred CCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHHhCCCCccEEEEEeCCCHHHHH
Confidence 56654444322 24478889999999999999986531 1 0 0 0 0 1145889988 4444444
Q ss_pred hcc----------------ccccCCCC------C--------CCCceEEEEeeCCCCHHHHHHHHHHHHHH
Q psy5049 92 QTS----------------IGLGVEQT------A--------LNDGLSLYESSHLRSANLWNRPHSPSLMA 132 (153)
Q Consensus 92 ~~a----------------~~i~~PtV------P--------~g~~RlRI~lsA~HT~edId~L~~~~L~~ 132 (153)
++. ..+.+|+. + .....+|+++--.+.++-|+-+.. +|+.
T Consensus 326 ~~~~~l~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~-al~~ 395 (398)
T PRK07504 326 RFLNALKIVRISNNLGDAKSLITHPATTTHKNLSPEARAELGISEGFLRLSAGLEDTDDLIEDLAA-ALKK 395 (398)
T ss_pred HHHHhCCcceecccCCCCCeeeeCCCCCCcccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHH-HHHh
Confidence 442 33334421 1 125689999998875555555554 5553
No 317
>KOG1549|consensus
Probab=27.32 E-value=98 Score=28.10 Aligned_cols=32 Identities=6% Similarity=-0.181 Sum_probs=25.0
Q ss_pred CCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049 104 LNDGLSLYESSHLRSANLWNRPHSPSLMAVFR 135 (153)
Q Consensus 104 ~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~ 135 (153)
..+.-+||++....|+||++++++++.+.+..
T Consensus 387 ~~~~~iRis~G~y~t~~di~~~~~~i~~~v~~ 418 (428)
T KOG1549|consen 387 LAHSSIRISIGRYTTEEDIDYLVDAIKKLVSL 418 (428)
T ss_pred hhcceeEEeeeeeCcHHHHHHHHHHHHHHHHh
Confidence 34678999999999999999999933344433
No 318
>PF15059 Speriolin_C: Speriolin C-terminus
Probab=27.24 E-value=1.1e+02 Score=23.89 Aligned_cols=53 Identities=19% Similarity=0.221 Sum_probs=38.9
Q ss_pred HHHHhhhcccEEee----cCCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHhCCCcc
Q psy5049 14 FRRKLNRLGLILYV----LFQAQTKPPRSHCICFISGIRRISVLAHNTRYFRRKLNRLGLIV 71 (153)
Q Consensus 14 ~~~~l~~~g~~~~~----~~~~~~~p~~~~~l~~~~~~~rr~~L~~ni~~fr~~L~~~G~~~ 71 (153)
|...-+--||+++- -.++|+.| +...-.+++|..|.+.-...-+.|+..|++-
T Consensus 18 Fp~~~rlyGft~sNipeKi~Q~s~~p-----~~~~~De~~r~~L~~ry~~im~rL~~lGY~~ 74 (146)
T PF15059_consen 18 FPGRRRLYGFTVSNIPEKIIQASTNP-----LDGKVDEEKRQTLTQRYVSIMNRLQKLGYNR 74 (146)
T ss_pred cccceeeecccccccHHHHHhhccCc-----cccccCHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 55555556888753 24677777 4555578889999988888889999999863
No 319
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=26.82 E-value=65 Score=26.32 Aligned_cols=25 Identities=36% Similarity=0.474 Sum_probs=21.5
Q ss_pred HHHHHHhHHHHHHHhhhcccEEeec
Q psy5049 4 ISVLAQNTRYFRRKLNRLGLILYVL 28 (153)
Q Consensus 4 ~~~~~~~~~~~~~~l~~~g~~~~~~ 28 (153)
.+++.++.++|++.|.++|+.+++.
T Consensus 256 ~~~~~~~~~~l~~~l~~~g~~~~~~ 280 (349)
T cd06454 256 RERLQENVRYLRRGLKELGFPVGGS 280 (349)
T ss_pred HHHHHHHHHHHHHHHHhcCCcccCC
Confidence 5677889999999999999988765
No 320
>PLN02187 rooty/superroot1
Probab=26.75 E-value=4.5e+02 Score=23.28 Aligned_cols=84 Identities=10% Similarity=0.015 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEc--C--------Cc-hHHHhcc----ccccCCCCCCCCceEEE
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLV--F--------FF-SKVGQTS----IGLGVEQTALNDGLSLY 111 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~--g--------~~-~~~~~~a----~~i~~PtVP~g~~RlRI 111 (153)
.+.++.+.++..++.+.|++.+........+--..+++ . ++ +.+..++ +.+.+-..=-...-+||
T Consensus 337 ~~~~~~l~~~r~~l~~~L~~~~~~~~~~~P~gg~fl~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~iRi 416 (462)
T PLN02187 337 AKKNKILKHNVDLVCDRLKDIPCVVCPKKPESCTYLLTKLELSLMDNIKDDIDFCVKLAREENLVFLPGDALGLKNWMRI 416 (462)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCcCCCCCCEeEEEEeecChhhCCCCCCHHHHHHHHHhhCCEEEECccccCCCCeEEE
Confidence 55677888899999999998764321111111222333 1 12 1222222 22222111112467999
Q ss_pred EeeCCCCHHHHHHHHHHHHHHH
Q psy5049 112 ESSHLRSANLWNRPHSPSLMAV 133 (153)
Q Consensus 112 ~lsA~HT~edId~L~~~~L~~~ 133 (153)
++.. .++.++..++ .|..+
T Consensus 417 s~~~--~~e~l~~al~-rL~~~ 435 (462)
T PLN02187 417 TIGV--EAHMLEDALE-RLKGF 435 (462)
T ss_pred EeCC--CHHHHHHHHH-HHHHH
Confidence 9975 4788777666 55443
No 321
>PRK13689 hypothetical protein; Provisional
Probab=26.56 E-value=73 Score=22.12 Aligned_cols=32 Identities=13% Similarity=0.031 Sum_probs=25.8
Q ss_pred eeCCCCHHHHHHHHHHHHHHHHhcCCCceeee
Q psy5049 113 SSHLRSANLWNRPHSPSLMAVFRGGGPGIFPL 144 (153)
Q Consensus 113 lsA~HT~edId~L~~~~L~~~~~~~~~~~~~~ 144 (153)
+++-.+.+++++++...+..+.+...|-=|+|
T Consensus 3 i~SKYsd~qvE~il~el~~VLeKH~Ap~DLSL 34 (75)
T PRK13689 3 QQSKYSDEQVEQLLAELLAVLEKHKAPTDLSL 34 (75)
T ss_pred ccccccHHHHHHHHHHHHHHHHhcCCCccHHH
Confidence 45678999999999878888888888876665
No 322
>PRK05957 aspartate aminotransferase; Provisional
Probab=26.37 E-value=4e+02 Score=22.57 Aligned_cols=80 Identities=10% Similarity=-0.046 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhCC-C-cccCCCC-CCeEEEEcCC---chHH-Hhcc--------ccccCCCCCCCCceEEE
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLG-L-IVYGHRD-SPVVPVLVFF---FSKV-GQTS--------IGLGVEQTALNDGLSLY 111 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G-~-~~~~~s~-SPIiPV~~g~---~~~~-~~~a--------~~i~~PtVP~g~~RlRI 111 (153)
.+.+++++++..++.+.|+..+ + .+ ..++ +..+-+-+.+ +.+. ..+. .+..| . +.+..-+||
T Consensus 286 ~~~~~~~~~~r~~l~~~L~~~~~~~~~-~~~~gg~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f-~-~~~~~~iRi 362 (389)
T PRK05957 286 QQHLPEIAQVRQILLKSLGQLQDRCTL-HPANGAFYCFLKVNTDLNDFELVKQLIREYRVAVIPGTTF-G-MKNGCYLRI 362 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccc-cCCCeeEEEEEeCCCCCChHHHHHHHHHHCCEEEccchhh-C-CCCCCEEEE
Confidence 4556778888888889988753 2 22 1222 3333333322 1122 1111 22223 1 223468999
Q ss_pred EeeCCCCHHHHHHHHHHHHH
Q psy5049 112 ESSHLRSANLWNRPHSPSLM 131 (153)
Q Consensus 112 ~lsA~HT~edId~L~~~~L~ 131 (153)
+++. .+++++...++ .|.
T Consensus 363 s~~~-~~~~~l~~~~~-~l~ 380 (389)
T PRK05957 363 AYGA-LQKATAKEGIE-RLV 380 (389)
T ss_pred EEec-CCHHHHHHHHH-HHH
Confidence 9966 46777777666 443
No 323
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=26.15 E-value=4.5e+02 Score=23.07 Aligned_cols=89 Identities=6% Similarity=-0.080 Sum_probs=51.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHhCC--CcccCC--CCCCeEEEEcCCc-------hHHHhcc------ccccCCCCCCCCc
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRLG--LIVYGH--RDSPVVPVLVFFF-------SKVGQTS------IGLGVEQTALNDG 107 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~G--~~~~~~--s~SPIiPV~~g~~-------~~~~~~a------~~i~~PtVP~g~~ 107 (153)
+.++..+++++...+|+++|++.- +...+. +..-.+-|-+.++ ..+..+. -.+..+. ..+..
T Consensus 315 ~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~iel~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~-g~~~~ 393 (425)
T PRK07495 315 EEEDLCERANQLGNRLKQRLASLRETVPEIADIRGPGFMNAVEFNDADSGLPSAEFANRVRLKALEKGLILLTC-GVHGN 393 (425)
T ss_pred HhchHHHHHHHHHHHHHHHHHHHHhhCCCeeeeecCceEEEEEEecCCCCCccHHHHHHHHHHHHHCCeEEeec-CCCCC
Confidence 456788999999999999997541 111111 1122333333221 1111221 2223332 22247
Q ss_pred eEEEEeeCCCCHHHHHHHHHHHHHHHHh
Q psy5049 108 LSLYESSHLRSANLWNRPHSPSLMAVFR 135 (153)
Q Consensus 108 RlRI~lsA~HT~edId~L~~~~L~~~~~ 135 (153)
.+||...-..|++|+|.+++ .+++..+
T Consensus 394 ~~r~~Ppl~it~~~id~~~~-~l~~~l~ 420 (425)
T PRK07495 394 VIRFLAPITIQDDVFAEALD-ILEASIL 420 (425)
T ss_pred EEEEeCCCccCHHHHHHHHH-HHHHHHH
Confidence 89999999999999999988 7765543
No 324
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=25.77 E-value=1.3e+02 Score=25.04 Aligned_cols=39 Identities=15% Similarity=0.141 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCCC---CCeEEEEcC
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRD---SPVVPVLVF 85 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~---SPIiPV~~g 85 (153)
+.++++++++..++++.|++.|+.+.+..+ .+|+.+.+.
T Consensus 260 ~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~~~~~~i~~~~~~ 301 (353)
T TIGR03235 260 QAWEVKLRAMRNQLRDALQTLGVKLNGDPAETIPHILNFSID 301 (353)
T ss_pred HHHHHHHHHHHHHHHHHhccCCeEEeCCcccccCCEEEEEeC
Confidence 577899999999999999999987643221 336666543
No 325
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=25.56 E-value=61 Score=27.29 Aligned_cols=25 Identities=36% Similarity=0.527 Sum_probs=20.9
Q ss_pred HHHHHHHhHHHHHHHhhhcccEEee
Q psy5049 3 LISVLAQNTRYFRRKLNRLGLILYV 27 (153)
Q Consensus 3 ~~~~~~~~~~~~~~~l~~~g~~~~~ 27 (153)
..+++.++++||++.|++.||.+++
T Consensus 294 ~~~~~~~~~~~l~~~L~~~g~~~~~ 318 (393)
T TIGR01822 294 LRDRLWANTRYFRERMEAAGFDIKP 318 (393)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 3467899999999999999998753
No 326
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=25.17 E-value=1.4e+02 Score=24.74 Aligned_cols=24 Identities=13% Similarity=0.182 Sum_probs=20.1
Q ss_pred HHHHHHHhHHHHHHHhhhcccEEe
Q psy5049 3 LISVLAQNTRYFRRKLNRLGLILY 26 (153)
Q Consensus 3 ~~~~~~~~~~~~~~~l~~~g~~~~ 26 (153)
..+++.+|++++++.|+..||.++
T Consensus 265 ~~~~~~~~~~~l~~~L~~~g~~~~ 288 (353)
T PRK05387 265 TRAKVIATRERLVEELEALGFEVL 288 (353)
T ss_pred HHHHHHHHHHHHHHHHHHCCCeEC
Confidence 356788899999999999999763
No 327
>PF08901 DUF1847: Protein of unknown function (DUF1847); InterPro: IPR014997 This group of proteins are functionally uncharacterised. They contain 4 N-terminal cysteines that may form a zinc-binding domain.
Probab=24.67 E-value=83 Score=24.75 Aligned_cols=22 Identities=23% Similarity=0.378 Sum_probs=19.8
Q ss_pred HHHHhHHHHHHHhhhcccEEee
Q psy5049 6 VLAQNTRYFRRKLNRLGLILYV 27 (153)
Q Consensus 6 ~~~~~~~~~~~~l~~~g~~~~~ 27 (153)
-|+++.+.|.+-|...||.+++
T Consensus 65 GL~~EA~~~~~iL~~~gFev~s 86 (157)
T PF08901_consen 65 GLRKEARILAKILEANGFEVYS 86 (157)
T ss_pred hHHHHHHHHHHHHHHCCCEEEE
Confidence 4788999999999999999976
No 328
>PF11814 DUF3335: Peptidase_C39 like family; InterPro: IPR021770 This family of proteins are functionally uncharacterised. This family is only found in bacteria. This presumed domain is typically between 226 to 230 amino acids in length.
Probab=24.44 E-value=2.1e+02 Score=23.43 Aligned_cols=50 Identities=16% Similarity=0.161 Sum_probs=36.7
Q ss_pred hhhcccEEeecCCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHHhCCCcc
Q psy5049 18 LNRLGLILYVLFQAQTKPPRSHCICFISGIRRISVLAHNTRYFRRKLNRLGLIV 71 (153)
Q Consensus 18 l~~~g~~~~~~~~~~~~p~~~~~l~~~~~~~rr~~L~~ni~~fr~~L~~~G~~~ 71 (153)
..++||.+-.--|..-|+| +.+-..++.++-+...=+.|++.+...|+.+
T Consensus 63 A~rrG~~vev~~~~~~plf----ld~vr~~~kk~v~~~v~~~f~~~a~~~gv~~ 112 (207)
T PF11814_consen 63 AARRGFKVEVWVSTDGPLF----LDSVRSEEKKEVMELVHEDFREEAEQAGVPV 112 (207)
T ss_pred HHHcCCceEEEECCCCCce----eccCCCHHHHHHHHHHHHHHHHHHHHCCCce
Confidence 4567998866655556665 6666677777766666677999999999865
No 329
>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Probab=24.28 E-value=2.1e+02 Score=26.08 Aligned_cols=102 Identities=10% Similarity=-0.010 Sum_probs=57.1
Q ss_pred hcccEEeecCCCCCCCCcccc-----cccccchHHHHHHHHHHHHHHHHHHhC-C-CcccCC--CCCCeEEEEcCCchH-
Q psy5049 20 RLGLILYVLFQAQTKPPRSHC-----ICFISGIRRISVLAHNTRYFRRKLNRL-G-LIVYGH--RDSPVVPVLVFFFSK- 89 (153)
Q Consensus 20 ~~g~~~~~~~~~~~~p~~~~~-----l~~~~~~~rr~~L~~ni~~fr~~L~~~-G-~~~~~~--s~SPIiPV~~g~~~~- 89 (153)
+-||+-.|+ | ++|. +..-+.+.+.++.++...+|.+.|+.. . ....++ ...=|.-|-+-.+..
T Consensus 315 ~HG~TYsgh------P-lacAaAla~L~i~e~e~l~~~~~~~~~~l~~~L~~~l~~~p~VgdVR~~Gli~~iElv~d~~t 387 (449)
T COG0161 315 MHGHTYSGN------P-LACAAALANLDILEEEDLLERVAEIGAYLQAGLQAALADHPLVGDVRGLGLIGAIELVADKAT 387 (449)
T ss_pred ccCCccccC------H-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcccCCcEEEeeccceEEEEEEeccccc
Confidence 457775454 5 4777 444466788999999999999999972 1 111110 111122222222111
Q ss_pred -------HH-hcc------ccccCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHH
Q psy5049 90 -------VG-QTS------IGLGVEQTALNDGLSLYESSHLRSANLWNRPHSPSLMAV 133 (153)
Q Consensus 90 -------~~-~~a------~~i~~PtVP~g~~RlRI~lsA~HT~edId~L~~~~L~~~ 133 (153)
+. .+. -.+.+|. | -.+=++.----|+||||++++ .+.+.
T Consensus 388 ~~~f~~~~~~~~~~~~~e~Gl~iRp~---g-~~i~~~PPliit~~eid~l~~-~l~~a 440 (449)
T COG0161 388 KTPFEARVGARVRAAALERGLLIRPL---G-DVIYLMPPLIITREEIDELVD-ALREA 440 (449)
T ss_pred ccchhhhHHHHHHHHHHHCCeEEeec---C-CEEEEcCCccCCHHHHHHHHH-HHHHH
Confidence 11 111 3445555 2 245555556689999999999 55433
No 330
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=24.23 E-value=5.3e+02 Score=23.22 Aligned_cols=79 Identities=5% Similarity=-0.023 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCch---------HHHhcc------------ccccCCCCCCCCce
Q psy5049 50 ISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFS---------KVGQTS------------IGLGVEQTALNDGL 108 (153)
Q Consensus 50 r~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~---------~~~~~a------------~~i~~PtVP~g~~R 108 (153)
++++.++-..+.+.|.+.|+.+.. ++.- ..+++.-+. ...+++ ++..|- ..+.+-
T Consensus 337 r~~l~~r~~~l~~~L~~~gi~~~~-~~aG-~flwi~l~~~~~~~~~~~~e~~l~~~ll~~~gV~v~pGs~F~--~~~~g~ 412 (496)
T PLN02376 337 SRRLGIRHKVFTTGIKKADIACLT-SNAG-LFAWMDLRHLLRDRNSFESEIELWHIIIDKVKLNVSPGSSFR--CTEPGW 412 (496)
T ss_pred HHHHHHHHHHHHHHHHHCCCcccC-CCce-EEEEEEchhhhccCCchhHHHHHHHHHHHcCCEEEeCccccC--CCCCCE
Confidence 677788888888999888876532 3332 223321110 011111 222231 123468
Q ss_pred EEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049 109 SLYESSHLRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 109 lRI~lsA~HT~edId~L~~~~L~~~~ 134 (153)
+|||+.. .++++++..++ .+....
T Consensus 413 ~Ri~fa~-~~~~~l~~al~-rl~~~l 436 (496)
T PLN02376 413 FRICFAN-MDDDTLHVALG-RIQDFV 436 (496)
T ss_pred EEEEeeC-CCHHHHHHHHH-HHHHHH
Confidence 9999985 55688877666 554433
No 331
>PRK09265 aminotransferase AlaT; Validated
Probab=24.19 E-value=4.5e+02 Score=22.36 Aligned_cols=80 Identities=9% Similarity=-0.102 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcCC-------c-hHHHhcc--------ccccCCCCCCCCceEEEEe
Q psy5049 51 SVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVFF-------F-SKVGQTS--------IGLGVEQTALNDGLSLYES 113 (153)
Q Consensus 51 ~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g~-------~-~~~~~~a--------~~i~~PtVP~g~~RlRI~l 113 (153)
.++.++..++.+.|++. |+.+...+.+..+-+-+.+ + +.+...+ .+..|+. .+..-+|+++
T Consensus 304 ~~~~~~r~~~~~~L~~~~~~~~~~p~~g~~l~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~F~~--~~~~~~Ri~~ 381 (404)
T PRK09265 304 GRLYEQRDRAWELLNAIPGVSCVKPKGALYAFPKLDPKVYPIHDDEQFVLDLLLQEKVLLVQGTGFNW--PEPDHFRIVT 381 (404)
T ss_pred HHHHHHHHHHHHHHhcCCCCcccCCCcceEEEEEecccccCCCCHHHHHHHHHHhCCEEEECchhhCC--CCCCeEEEEe
Confidence 35677777888888876 6543322223333222321 1 2232322 2222321 2356899999
Q ss_pred eCCCCHHHHHHHHHHHHHHHHh
Q psy5049 114 SHLRSANLWNRPHSPSLMAVFR 135 (153)
Q Consensus 114 sA~HT~edId~L~~~~L~~~~~ 135 (153)
. -++|+++..++ .|..+.+
T Consensus 382 ~--~~~e~l~~~l~-rl~~~l~ 400 (404)
T PRK09265 382 L--PRVDDLEEAIG-RIGRFLS 400 (404)
T ss_pred C--CCHHHHHHHHH-HHHHHHH
Confidence 4 56889888777 6655443
No 332
>PRK08354 putative aminotransferase; Provisional
Probab=23.84 E-value=4.1e+02 Score=21.75 Aligned_cols=23 Identities=9% Similarity=0.013 Sum_probs=16.3
Q ss_pred ceEEEEeeCCCCHHHHHHHHHHHHHHH
Q psy5049 107 GLSLYESSHLRSANLWNRPHSPSLMAV 133 (153)
Q Consensus 107 ~RlRI~lsA~HT~edId~L~~~~L~~~ 133 (153)
.-+||+++. +++.+++++ +++.+
T Consensus 287 ~~iRi~~~~---~~~~~~l~~-al~~~ 309 (311)
T PRK08354 287 GYIRFSVRD---REENEKLIR-ALREW 309 (311)
T ss_pred CeEEEEeCC---HHHHHHHHH-HHHHh
Confidence 689999984 456666666 66654
No 333
>TIGR03455 HisG_C-term ATP phosphoribosyltransferase, C-terminal domain. This domain corresponds to the C-terminal third of the HisG protein. It is absent in many lineages.
Probab=23.50 E-value=2.8e+02 Score=19.75 Aligned_cols=89 Identities=11% Similarity=0.046 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhccccccCCCCCCCCceEEEEeeCCCCHHHHHHHHH
Q psy5049 48 RRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTSIGLGVEQTALNDGLSLYESSHLRSANLWNRPHS 127 (153)
Q Consensus 48 ~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a~~i~~PtVP~g~~RlRI~lsA~HT~edId~L~~ 127 (153)
+.++.+......+...+...++... .-.-| -..-+.+.+..++..-|||-.=...==+.+++-..++++..+
T Consensus 8 ~~~~~~~~l~~ri~gvl~A~~~~~v-~~Nvp-----~~~l~~v~~ilPg~~~PTVs~l~~~~w~AV~~vv~~~~v~~~-- 79 (100)
T TIGR03455 8 EKREKIEQLLTRLQGVLAARGKVLL-MMNVP-----RDNLDEVRALLPGLEGPTVSPLADEGWVAVHAVVDEKVVNEL-- 79 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHhheeEE-EEeCC-----hhhHHHHHHhcCCCCCCCcCcCCCCCeEEEEEEEcHHHHHHH--
Confidence 5677888888888888887776432 11112 111234455558888899854222235677777788888884
Q ss_pred HHHHHHHhcCCCceeeecc
Q psy5049 128 PSLMAVFRGGGPGIFPLQH 146 (153)
Q Consensus 128 ~~L~~~~~~~~~~~~~~~~ 146 (153)
++.+++.|+.+|+-+..
T Consensus 80 --~~~Lk~~GA~~Ilv~~i 96 (100)
T TIGR03455 80 --IDKLKAAGARDILVLPI 96 (100)
T ss_pred --HHHHHHcCCCeEEEech
Confidence 55888999999886654
No 334
>cd00756 MoaE MoaE family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor for a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), which carries the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase in the second major step in Moco biosynthesis. MPT synthase is a heterotetramer consisting of two large (MoaE) and two small (MoaD) subunits.
Probab=23.26 E-value=2.8e+02 Score=20.49 Aligned_cols=46 Identities=7% Similarity=-0.008 Sum_probs=35.4
Q ss_pred CCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHhcCCCceeeeccccc
Q psy5049 101 QTALNDGLSLYESSHLRSANLWNRPHSPSLMAVFRGGGPGIFPLQHRAD 149 (153)
Q Consensus 101 tVP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~~~~~~~~~~~~~~~ 149 (153)
.++.|+.-+-+.+++.|-++-++.+-. +++.++.. -++.-.++..+
T Consensus 74 ~l~vGe~~v~i~v~a~hR~~af~A~~~-~id~lK~~--~PiWKkE~~~~ 119 (124)
T cd00756 74 RLPPGEAIVLVAVSSPHRKEAFEACEF-LIDRLKHR--APIWKKEIFEG 119 (124)
T ss_pred ccCCCCEEEEEEEecCCHHHHHHHHHH-HHHHHHhh--CCEEEEEEeCC
Confidence 467889999999999999999998877 88887765 44544444443
No 335
>PF11950 DUF3467: Protein of unknown function (DUF3467); InterPro: IPR021857 This entry is represented by Bacteriophage 92, 0rf53. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family of proteins are functionally uncharacterised. This protein is found in bacteria, archaea and viruses. Proteins in this family are typically between 101 to 118 amino acids in length.
Probab=23.21 E-value=1e+02 Score=21.58 Aligned_cols=39 Identities=13% Similarity=-0.091 Sum_probs=31.4
Q ss_pred CCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHhcCCC
Q psy5049 100 EQTALNDGLSLYESSHLRSANLWNRPHSPSLMAVFRGGGP 139 (153)
Q Consensus 100 PtVP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~~~~~~ 139 (153)
|..|...-.-||.+|..|-+.-+..|-. .++..+..+|+
T Consensus 51 p~~~~~~v~sRVimsP~~AKrL~~aL~~-~l~~YE~~fG~ 89 (92)
T PF11950_consen 51 PGRPEAKVSSRVIMSPQHAKRLLKALQQ-NLQKYEQRFGE 89 (92)
T ss_pred CCCCccceEEEEEeCHHHHHHHHHHHHH-HHHHHHHHcCC
Confidence 7778777888999999888888888777 78877777665
No 336
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=23.21 E-value=5.2e+02 Score=23.60 Aligned_cols=88 Identities=9% Similarity=-0.067 Sum_probs=53.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHhCCCccc-CCCCCCeEEEEcCCc------------hHHHhcc---------------cc
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRLGLIVY-GHRDSPVVPVLVFFF------------SKVGQTS---------------IG 96 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~G~~~~-~~s~SPIiPV~~g~~------------~~~~~~a---------------~~ 96 (153)
..++++.+. +.++|+-++|.+.|..+. ..+.+. |++--. ..+.... ..
T Consensus 325 ~~~yl~~Rv-~Qv~YL~~~l~~~GVpi~~paGGHa---vfvda~~~lphip~eqFpaqala~ely~e~GiRavElG~~~~ 400 (471)
T COG3033 325 NFDYLAHRV-AQVQYLADGLEEAGVPIVQPAGGHA---VFVDAGKFLPHIPAEQFPAQALACELYKEAGIRAVELGSFSL 400 (471)
T ss_pred CcHHHHHHH-HHHHHHHHHHHhcCCeeEecCCCce---EEeehhhhcCCCChhhCcHHHHHHHHHHHhCeeeeeeeceec
Confidence 456666665 457999999999998542 222222 332111 1111110 11
Q ss_pred ccCCCCCCCC----ceEEEEee-CCCCHHHHHHHHHHHHHHHHhcC
Q psy5049 97 LGVEQTALND----GLSLYESS-HLRSANLWNRPHSPSLMAVFRGG 137 (153)
Q Consensus 97 i~~PtVP~g~----~RlRI~ls-A~HT~edId~L~~~~L~~~~~~~ 137 (153)
-+-|.+++.. ..+|+++. +..|.+.+|.+++ +++.+.+..
T Consensus 401 ~rd~ktg~q~~~~~elvRltipRrtYt~~HmD~V~~-a~~~l~e~~ 445 (471)
T COG3033 401 GRDPKTGKQHPPPAELVRLTIPRRTYTQTHMDFVIE-AFKALKENA 445 (471)
T ss_pred ccCCCccccCCCchheeeEeccccccchhHHHHHHH-HHHHHHhcc
Confidence 1444443333 89999985 6789999999999 888887654
No 337
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=23.20 E-value=4.6e+02 Score=22.19 Aligned_cols=87 Identities=7% Similarity=-0.115 Sum_probs=49.5
Q ss_pred chHHHHHHHHHHHHHHHHHHhCC----Ccc--cC---CCCCCeEEEEcCCc---hHHHhcc----cc--ccCCCCC----
Q psy5049 46 GIRRISVLAHNTRYFRRKLNRLG----LIV--YG---HRDSPVVPVLVFFF---SKVGQTS----IG--LGVEQTA---- 103 (153)
Q Consensus 46 ~~~rr~~L~~ni~~fr~~L~~~G----~~~--~~---~s~SPIiPV~~g~~---~~~~~~a----~~--i~~PtVP---- 103 (153)
-++..++-+++..++++.|.+.. +.. .. .+.++++++.+.+. ....+.. +. .-|+.+.
T Consensus 249 l~~~~~~R~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~gI~~~~~~~p~~~~~~ 328 (375)
T PRK11706 249 ADRINQRRLALWQRYYDALAPLAEAGRIELPSIPDDCKHNAHMFYIKLRDLEDRSALINFLKEAGIMAVFHYIPLHSSPA 328 (375)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCCeeecCCCCCCCceeeEEEEEEECCcCCHHHHHHHHHHCCCCccccCCccCcchh
Confidence 46667777788888899887653 211 01 02255788887542 2222222 11 1111111
Q ss_pred ------------C----CCceEEEEeeCCCCHHHHHHHHHHHHHHH
Q psy5049 104 ------------L----NDGLSLYESSHLRSANLWNRPHSPSLMAV 133 (153)
Q Consensus 104 ------------~----g~~RlRI~lsA~HT~edId~L~~~~L~~~ 133 (153)
. ....+-+-++...|++|++++++ +++..
T Consensus 329 ~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~~~~~i~~-~i~~~ 373 (375)
T PRK11706 329 GERFGRFHGEDRYTTKESERLLRLPLFYNLTDVEQRTVID-TILEF 373 (375)
T ss_pred hHhcCCCCCCChHHHHHHhCcEeccCCCCCCHHHHHHHHH-HHHHH
Confidence 0 12235666788899999999988 77654
No 338
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=23.09 E-value=72 Score=27.21 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=20.0
Q ss_pred HHHHHHhHHHHHHHhhhcccEEee
Q psy5049 4 ISVLAQNTRYFRRKLNRLGLILYV 27 (153)
Q Consensus 4 ~~~~~~~~~~~~~~l~~~g~~~~~ 27 (153)
.+++.+|.+||+++|+.+|+.+++
T Consensus 301 ~~~~~~~~~~l~~~L~~~g~~~~~ 324 (402)
T TIGR01821 301 RRAHQENVKRLKNLLEALGIPVIP 324 (402)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCC
Confidence 346678999999999999998754
No 339
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=22.17 E-value=1e+02 Score=25.18 Aligned_cols=25 Identities=16% Similarity=0.257 Sum_probs=19.4
Q ss_pred hHHHHHHHhHHHHHHHhhhcccEEe
Q psy5049 2 RLISVLAQNTRYFRRKLNRLGLILY 26 (153)
Q Consensus 2 ~~~~~~~~~~~~~~~~l~~~g~~~~ 26 (153)
|||.=+.---|||+.+|+..||.|.
T Consensus 42 qKl~l~~saMRhfa~~L~~~G~~V~ 66 (224)
T PF04244_consen 42 QKLVLFFSAMRHFADELRAKGFRVH 66 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--EE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 5677777788999999999999973
No 340
>PHA01971 hypothetical protein
Probab=21.90 E-value=96 Score=23.48 Aligned_cols=40 Identities=13% Similarity=0.044 Sum_probs=26.8
Q ss_pred hcccEEeecCCCCCCCCcccc--ccc-c-cchHHHHHHHHHHHHHHH
Q psy5049 20 RLGLILYVLFQAQTKPPRSHC--ICF-I-SGIRRISVLAHNTRYFRR 62 (153)
Q Consensus 20 ~~g~~~~~~~~~~~~p~~~~~--l~~-~-~~~~rr~~L~~ni~~fr~ 62 (153)
+-||.|.|. ||-+.| .++ .++ + ......+++|+.-.|..+
T Consensus 74 ~NGF~VtG~-SAcvdp--~nfd~eiG~kiA~~nA~~kiW~LeGY~L~ 117 (123)
T PHA01971 74 RNGFTVTGE-SACASP--ENFDAEIGRKIARENAVNKIWMLEGYLLK 117 (123)
T ss_pred CCCcEEEee-ecccCh--HHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 459999995 788888 444 111 1 336678888888887543
No 341
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=21.65 E-value=5.7e+02 Score=22.61 Aligned_cols=83 Identities=7% Similarity=-0.084 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCc--------h---HHH-hcc---ccccCCCC---CCCCce
Q psy5049 47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFF--------S---KVG-QTS---IGLGVEQT---ALNDGL 108 (153)
Q Consensus 47 ~~rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~--------~---~~~-~~a---~~i~~PtV---P~g~~R 108 (153)
.+.|++|.++...+.+.|++.|+.... +.+.. .+++.-+ + +.. .+. .....|.. ....+-
T Consensus 334 ~~~r~~l~~~~~~~~~~L~~~gi~~~~-~~ag~-fvw~~L~~~~~~~~~~~e~~l~~~ll~~~gV~v~pG~~f~~~~~g~ 411 (447)
T PLN02607 334 RTNRERLRKRYEMIVQGLRRAGIECLK-GNAGL-FCWMNLSPLLETPTREGELALWDSILREVKLNISPGSSCHCSEPGW 411 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCccc-CCeeE-EEEEEchHhhcCCCchhHHHHHHHHHHhCCEEEcCccccCCCCCCE
Confidence 356788888999999999998876432 32221 2222111 1 111 111 11122221 123578
Q ss_pred EEEEeeCCCCHHHHHHHHHHHHHHH
Q psy5049 109 SLYESSHLRSANLWNRPHSPSLMAV 133 (153)
Q Consensus 109 lRI~lsA~HT~edId~L~~~~L~~~ 133 (153)
+|||.+. .++++++..++ .+..+
T Consensus 412 fRi~fa~-~~~~~l~~gl~-Ri~~~ 434 (447)
T PLN02607 412 FRVCFAN-MSEDTLEVALK-RIHRF 434 (447)
T ss_pred EEEEecc-CCHHHHHHHHH-HHHHH
Confidence 9999987 55788887665 44433
No 342
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=21.36 E-value=81 Score=27.03 Aligned_cols=23 Identities=17% Similarity=0.210 Sum_probs=20.0
Q ss_pred HHHHHHhHHHHHHHhhhcccEEe
Q psy5049 4 ISVLAQNTRYFRRKLNRLGLILY 26 (153)
Q Consensus 4 ~~~~~~~~~~~~~~l~~~g~~~~ 26 (153)
..++.+|.+||+++|+.+||.++
T Consensus 302 ~~~~~~~~~~l~~~L~~~g~~~~ 324 (410)
T PRK13392 302 RDAHQDRVAALKAKLNANGIPVM 324 (410)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCC
Confidence 45688999999999999999864
No 343
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=20.99 E-value=1.6e+02 Score=25.14 Aligned_cols=21 Identities=14% Similarity=0.260 Sum_probs=17.9
Q ss_pred HHHHHhHHHHHHHhhhcccEE
Q psy5049 5 SVLAQNTRYFRRKLNRLGLIL 25 (153)
Q Consensus 5 ~~~~~~~~~~~~~l~~~g~~~ 25 (153)
.++.+|.+||+++|+..||.+
T Consensus 302 ~~~~~~~~~l~~~L~~~g~~~ 322 (406)
T PRK13393 302 ERHQDRVARLRARLDKAGIPH 322 (406)
T ss_pred HHHHHHHHHHHHHHHHcCCCc
Confidence 456789999999999999875
No 344
>KOG3307|consensus
Probab=20.67 E-value=1.8e+02 Score=22.35 Aligned_cols=36 Identities=6% Similarity=0.040 Sum_probs=29.0
Q ss_pred cCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049 98 GVEQTALNDGLSLYESSHLRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 98 ~~PtVP~g~~RlRI~lsA~HT~edId~L~~~~L~~~~ 134 (153)
|--.||.|++-+=|++|+.|...-++..-. |++.++
T Consensus 86 RLG~VpvgEsSviIavSS~HRa~~l~A~~~-~ID~LK 121 (150)
T KOG3307|consen 86 RLGKVPVGESSVIIAVSSPHRATALQATEK-CIDLLK 121 (150)
T ss_pred hccCcccCcceEEEEecChhhHHHHHHHHH-HHHHHH
Confidence 556789999999999999999988887555 555444
No 345
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=20.67 E-value=1.2e+02 Score=26.93 Aligned_cols=85 Identities=8% Similarity=-0.148 Sum_probs=50.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHhCC-CcccC--CCCCCeEEEEcC-Cch----HHHhcc------ccccCCCCCCCCceEE
Q psy5049 45 SGIRRISVLAHNTRYFRRKLNRLG-LIVYG--HRDSPVVPVLVF-FFS----KVGQTS------IGLGVEQTALNDGLSL 110 (153)
Q Consensus 45 ~~~~rr~~L~~ni~~fr~~L~~~G-~~~~~--~s~SPIiPV~~g-~~~----~~~~~a------~~i~~PtVP~g~~RlR 110 (153)
+.+...++.++.-.+|++.|+++. ...++ .+..-++-|.+. +.+ .+..+. -.+..|. | ..+|
T Consensus 346 ~~~~l~~~~~~~G~~l~~~L~~l~~~~~v~~vrG~Gl~~gvel~~~~~~~~~~~~~i~~~~~~~Gll~~~~---g-~~l~ 421 (453)
T PRK06943 346 AEDDVLARNARKSARLRAALAPLAAHPQVRHLRQRGTIFAFDVALDGDAARTFSRRFFEAALERELLLRPI---G-TTVY 421 (453)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCEEeEeccccEEEEEEccCCCcchHHHHHHHHHHHHCCcEEEec---C-CEEE
Confidence 445678888899999999998641 11000 122234445443 211 111121 2223443 3 3599
Q ss_pred EEeeCCCCHHHHHHHHHHHHHHHH
Q psy5049 111 YESSHLRSANLWNRPHSPSLMAVF 134 (153)
Q Consensus 111 I~lsA~HT~edId~L~~~~L~~~~ 134 (153)
|+....+|++|||++++ +++...
T Consensus 422 ~~Ppl~it~~eid~~~~-~l~~al 444 (453)
T PRK06943 422 LMPPYVLDDDEIAWLAE-RTRATL 444 (453)
T ss_pred EeCCCcCCHHHHHHHHH-HHHHHH
Confidence 99999999999999998 775444
No 346
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=20.63 E-value=5e+02 Score=21.61 Aligned_cols=80 Identities=15% Similarity=0.018 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHhC-CCcccCCCCCCeEEEEcCC-chHHH-hcc----ccccCCCC---CCCCceEEEEeeCCCC
Q psy5049 49 RISVLAHNTRYFRRKLNRL-GLIVYGHRDSPVVPVLVFF-FSKVG-QTS----IGLGVEQT---ALNDGLSLYESSHLRS 118 (153)
Q Consensus 49 rr~~L~~ni~~fr~~L~~~-G~~~~~~s~SPIiPV~~g~-~~~~~-~~a----~~i~~PtV---P~g~~RlRI~lsA~HT 118 (153)
.++.+.++-.++.+.|++. |+.+.. +.+.-+-+-+.. ..+.. .+. ..++ |.- +.+..-+||+++..
T Consensus 268 ~~~~~~~~r~~l~~~L~~~~~~~~~~-~~~~fl~~~~~~~~~~l~~~ll~~~gv~v~-pg~~f~~~~~~~iRi~~~~~-- 343 (360)
T PRK07392 268 TWAWLPPAREALFQGLASLPGLTPLP-SAANFLLVQSQGSALQLQEKLLQQHRILIR-DCLSFPELGDRYFRVAVRTE-- 343 (360)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcEECC-CCCCEEEEEcCCCHHHHHHHHHhhCCEEEE-eCCCCCCCCCCEEEEEeCCH--
Confidence 3456777777888888775 655532 445544443332 22222 211 2222 221 22456899999873
Q ss_pred HHHHHHHHHHHHHHHH
Q psy5049 119 ANLWNRPHSPSLMAVF 134 (153)
Q Consensus 119 ~edId~L~~~~L~~~~ 134 (153)
++.+++.+ +++.+.
T Consensus 344 -~~~~~l~~-al~~~~ 357 (360)
T PRK07392 344 -AENQRLLE-ALAAIL 357 (360)
T ss_pred -HHHHHHHH-HHHHHh
Confidence 45556655 665554
No 347
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=20.41 E-value=1.9e+02 Score=25.58 Aligned_cols=53 Identities=11% Similarity=0.087 Sum_probs=32.2
Q ss_pred hHHHHHHHhhhcccEEeecCCCCCCCCcccccccccchHHHHHHHHHHHHHHHHHH
Q psy5049 10 NTRYFRRKLNRLGLILYVLFQAQTKPPRSHCICFISGIRRISVLAHNTRYFRRKLN 65 (153)
Q Consensus 10 ~~~~~~~~l~~~g~~~~~~~~~~~~p~~~~~l~~~~~~~rr~~L~~ni~~fr~~L~ 65 (153)
...++|.-|.++|..+.-+.+...+|-|..+..+-..+ +.+.+.+..+++.+.
T Consensus 244 R~~fl~~~L~~lGL~vn~~~~~~~~P~LTpl~lss~~~---~~v~~l~~~l~~~~~ 296 (367)
T PF09825_consen 244 RLEFLKALLTKLGLKVNEDTSETTVPSLTPLHLSSLSP---GKVSELLSSLKEIIT 296 (367)
T ss_pred HHHHHHHHHHHhCcccCCCccccCCCCccceEEEcCCc---chHHHHHHHHHHhhc
Confidence 35679999999999997776645666656664443333 333333343444443
No 348
>PRK03967 histidinol-phosphate aminotransferase; Provisional
Probab=20.16 E-value=5.1e+02 Score=21.49 Aligned_cols=77 Identities=16% Similarity=0.129 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcccCCCCCCeEEEEcCCchHHHhcc---cccc-CCCCCCCCceEEEEeeCCCCHHHHHH
Q psy5049 49 RISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTS---IGLG-VEQTALNDGLSLYESSHLRSANLWNR 124 (153)
Q Consensus 49 rr~~L~~ni~~fr~~L~~~G~~~~~~s~SPIiPV~~g~~~~~~~~a---~~i~-~PtVP~g~~RlRI~lsA~HT~edId~ 124 (153)
.+..+.++-..+.+.|.+.++ .+.+.-+ ++.-+ ....+. ..++ ++ +.+..-+||++. +.++.++
T Consensus 256 ~~~~~~~~r~~l~~~L~~~~~----~~~~~~~--~~~~~-~~~~l~~~gi~v~~~~--~~~~~~~Ri~~~---~~~~~~~ 323 (337)
T PRK03967 256 RIDYIIKERERVRRELGEYAY----PSDANFL--LLKLD-AYDYLLENGIVVRKLS--GRLEGHIRVTVG---KREENDE 323 (337)
T ss_pred HHHHHHHHHHHHHHHhccCcC----CCCCcEE--EEhHH-HHHHHHHCCEEEEeCC--CCCCCeEEEecC---CHHHHHH
Confidence 344555666667777766432 2334432 22211 111111 3333 22 223447999877 5788888
Q ss_pred HHHHHHHHHHhcCC
Q psy5049 125 PHSPSLMAVFRGGG 138 (153)
Q Consensus 125 L~~~~L~~~~~~~~ 138 (153)
+++ +|+.+.+..|
T Consensus 324 l~~-~l~~~~~~~~ 336 (337)
T PRK03967 324 FIK-ALKEIKEGYG 336 (337)
T ss_pred HHH-HHHHHHHhcC
Confidence 888 8888877644
No 349
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=20.04 E-value=1.2e+02 Score=24.92 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=22.5
Q ss_pred HHHHHHHhHHHHHHHhhhcccEEeec
Q psy5049 3 LISVLAQNTRYFRRKLNRLGLILYVL 28 (153)
Q Consensus 3 ~~~~~~~~~~~~~~~l~~~g~~~~~~ 28 (153)
..+++.+|.+++++.|++.|+.+++.
T Consensus 277 ~~~~l~~~~~~l~~~L~~~~~~~~~~ 302 (363)
T PF00155_consen 277 LRERLRENRDLLREALEEIGITVLPP 302 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSEEEHH
T ss_pred chhhHHHHHHHHHHHHHHhhhheeec
Confidence 45788999999999999999998665
Done!