RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5049
(153 letters)
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type
I, acyltransferase, PY phosphate; HET: PLP; 2.30A
{Sphingobacterium multivorum}
Length = 398
Score = 37.5 bits (88), Expect = 8e-04
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 49 RISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLV 84
I L NT Y + +L G + G +SP++P+ +
Sbjct: 296 HIEKLWKNTDYAKAQLLDHGFDL-GATESPILPIFI 330
Score = 30.2 bits (69), Expect = 0.20
Identities = 15/75 (20%), Positives = 22/75 (29%), Gaps = 15/75 (20%)
Query: 7 LAQNTRYFRRKLNRLGLILYVLFQAQTKPPRSHCICFISGIRRISVLAHNTRYFRRKLNR 66
L +NT Y + +L G S + T + + L
Sbjct: 300 LWKNTDYAKAQLLDHGF--------DLGATESPILPIFIRS------NEKTFWVTKMLQD 345
Query: 67 LGLIVYGHRDSPVVP 81
G+ V SP VP
Sbjct: 346 DGVFVNPVV-SPAVP 359
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate
COA ligase, pyridoxal phosphate, COEN transferase,
structural genomics; HET: PLP; 2.00A {Escherichia coli}
SCOP: c.67.1.4
Length = 401
Score = 37.5 bits (88), Expect = 8e-04
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 49 RISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLV 84
L N R FR +++ G + D ++PV++
Sbjct: 301 LRDRLWANARQFREQMSAAGFTL-AGADHAIIPVML 335
Score = 31.4 bits (72), Expect = 0.086
Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 15/75 (20%)
Query: 7 LAQNTRYFRRKLNRLGLILYVLFQAQTKPPRSHCICFISGIRRISVLAHNTRYFRRKLNR 66
L N R FR +++ G I + G A + F R+L +
Sbjct: 305 LWANARQFREQMSAAGF--------TLAGADHAIIPVMLGD------AVVAQKFARELQK 350
Query: 67 LGLIVYGHRDSPVVP 81
G+ V G PVVP
Sbjct: 351 EGIYVTGFF-YPVVP 364
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas
paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A*
2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Length = 427
Score = 37.2 bits (87), Expect = 0.001
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 49 RISVLAHNTRYFRRKLNRLGL-IVYGHRDSPVVPVLV 84
+ L N R L +G + DS +V V++
Sbjct: 317 KRERLWSNARALHGGLKAMGFRLGTETCDSAIVAVML 353
Score = 29.1 bits (66), Expect = 0.58
Identities = 15/75 (20%), Positives = 21/75 (28%), Gaps = 13/75 (17%)
Query: 7 LAQNTRYFRRKLNRLGLILYVLFQAQTKPPRSHCICFISGIRRISVLAHNTRYFRRKLNR 66
L N R L +G F+ T+ S + + + L
Sbjct: 321 LWSNARALHGGLKAMG------FRLGTETCDSAIVAVMLED------QEQAAMMWQALLD 368
Query: 67 LGLIVYGHRDSPVVP 81
GL V R P P
Sbjct: 369 GGLYVNMAR-PPATP 382
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism,
transferase; HET: PLP; 2.30A {Coxiella burnetii}
Length = 399
Score = 37.2 bits (87), Expect = 0.001
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 49 RISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLV 84
L N+RYFR + +LG + + P++PV++
Sbjct: 300 LRKQLQENSRYFRAGMEKLGFQL-VPGNHPIIPVML 334
Score = 31.8 bits (73), Expect = 0.078
Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 15/75 (20%)
Query: 7 LAQNTRYFRRKLNRLGLILYVLFQAQTKPPRSHCICFISGIRRISVLAHNTRYFRRKLNR 66
L +N+RYFR + +LG Q P I + G A L +
Sbjct: 304 LQENSRYFRAGMEKLGF--------QLVPGNHPIIPVMLGD------AQLATNMADHLLQ 349
Query: 67 LGLIVYGHRDSPVVP 81
G+ V G PVVP
Sbjct: 350 EGIYVVGFS-YPVVP 363
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence,
acyltransferase, aminotransferase, pyridoxal PHO
transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB:
3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Length = 409
Score = 36.1 bits (84), Expect = 0.002
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 49 RISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLV 84
R L R R L++LGL + +S ++ +
Sbjct: 309 RRQHLDRMARKLRIGLSQLGLTIRS--ESQIIGLET 342
Score = 28.0 bits (63), Expect = 1.4
Identities = 16/75 (21%), Positives = 22/75 (29%), Gaps = 16/75 (21%)
Query: 7 LAQNTRYFRRKLNRLGLILYVLFQAQTKPPRSHCICFISGIRRISVLAHNTRYFRRKLNR 66
L + R R L++LGL + S I +G NT R L
Sbjct: 313 LDRMARKLRIGLSQLGLTI---------RSESQIIGLETGD------ERNTEKVRDYLES 357
Query: 67 LGLIVYGHRDSPVVP 81
G+ P
Sbjct: 358 NGVFGSVFC-RPATS 371
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme
biosynthesis, pyridoxal PHOS dependent, transferase,
acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus}
SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Length = 401
Score = 36.1 bits (84), Expect = 0.003
Identities = 7/32 (21%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 53 LAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLV 84
+ + + +L LG+ + S +VPV++
Sbjct: 307 QQMHAKVLKMRLKALGMPI-IDHGSHIVPVVI 337
Score = 26.4 bits (59), Expect = 4.5
Identities = 3/17 (17%), Positives = 8/17 (47%)
Query: 7 LAQNTRYFRRKLNRLGL 23
+ + + +L LG+
Sbjct: 307 QQMHAKVLKMRLKALGM 323
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA
synthase, biotin biosynthesis, 8-AMIN oxonanoate
synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB:
2g6w_A* 1dje_A* 1dj9_A*
Length = 384
Score = 29.4 bits (67), Expect = 0.40
Identities = 16/75 (21%), Positives = 18/75 (24%), Gaps = 15/75 (20%)
Query: 7 LAQNTRYFRRKLNRLGLILYVLFQAQTKPPRSHCICFISGIRRISVLAHNTRYFRRKLNR 66
LA FR + L S I G KL +
Sbjct: 295 LAALITRFRAGVQDLPF--------TLADSCSAIQPLIVGD------NSRALQLAEKLRQ 340
Query: 67 LGLIVYGHRDSPVVP 81
G V R P VP
Sbjct: 341 QGCWVTAIR-PPTVP 354
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 0.72
Identities = 34/193 (17%), Positives = 55/193 (28%), Gaps = 71/193 (36%)
Query: 3 LISVLAQ-NTRYFRRKLNRLGLI----LYVLFQAQTKPPRSHCICFISGIRRISVLA--- 54
+ + + N+ K + L+ V+ + PP+S +R+ +
Sbjct: 349 VQDYVNKTNSHLPAGKQVEISLVNGAKNLVV----SGPPQSLY-GLNLTLRKAKAPSGLD 403
Query: 55 -HNTRYFRRKLNRLGLIVYGHRDSPV-VPVLVFFFS-------------------KVGQT 93
+ RKL + +R PV P F S
Sbjct: 404 QSRIPFSERKL------KFSNRFLPVASP----FHSHLLVPASDLINKDLVKNNVSFNAK 453
Query: 94 SIGLGVEQTALNDGLSLYESSHLR--SANL--------------WNR--PHSPSLMAVF- 134
I + V T DG S LR S ++ W + + F
Sbjct: 454 DIQIPVYDT--FDG------SDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG 505
Query: 135 RGGGPGIFPLQHR 147
GG G+ L HR
Sbjct: 506 PGGASGLGVLTHR 518
Score = 28.1 bits (62), Expect = 1.4
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 20/52 (38%)
Query: 107 GLSLYESSHLRSA-NLWNR-----------------PHSPSLMAVFRGGGPG 140
G+ LY++S ++A ++WNR ++P + + GG G
Sbjct: 1632 GMDLYKTS--KAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKG 1681
Score = 27.7 bits (61), Expect = 1.7
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 9/65 (13%)
Query: 16 RKLNRLGLILYVLFQAQTKPPRSHCICF-ISGIRRISVLAHNTRYFRRKLNRLG--LIVY 72
++ + L V ++ T+ +H + F G + VL H R + G +IV
Sbjct: 477 ERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTH------RNKDGTGVRVIVA 530
Query: 73 GHRDS 77
G D
Sbjct: 531 GTLDI 535
Score = 27.7 bits (61), Expect = 1.8
Identities = 31/170 (18%), Positives = 45/170 (26%), Gaps = 58/170 (34%)
Query: 2 RLISVLAQNTRYFRRKLNRLGLILYVLFQAQTKPPRSH-CICFIS--GIRRISVLAHNTR 58
LI + F + LN IL L P + + IS I I LAH
Sbjct: 197 ELIRTTLDAEKVFTQGLN----ILEWLENPSNTPDKDYLLSIPISCPLIGVIQ-LAH--- 248
Query: 59 YFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKVGQTSIGLGVEQTAL-----NDGLSLYES 113
+ LG +P G T G+ TA+ + S + S
Sbjct: 249 -YVVTAKLLGF-------TPGE----LRSYLKGATGHSQGL-VTAVAIAETDSWESFFVS 295
Query: 114 SH----------LRSANLWNRPHS-----------------PSLMAVFRG 136
+R + P++ PS M
Sbjct: 296 VRKAITVLFFIGVRCYEAY--PNTSLPPSILEDSLENNEGVPSPMLSISN 343
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase,
structural genomics; HET: PLP; 2.40A {Archaeoglobus
fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Length = 371
Score = 28.5 bits (64), Expect = 0.93
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 47 IRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLVFFFSKV 90
I+R R F ++ +LG+ G D+P L+FF ++V
Sbjct: 268 IKRWDEEVEKARRFAAEMEKLGIKQLG--DNPHNHDLMFFHAEV 309
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine
decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP;
2.11A {Methanocaldococcus jannaschii}
Length = 397
Score = 27.7 bits (62), Expect = 1.5
Identities = 6/31 (19%), Positives = 11/31 (35%), Gaps = 3/31 (9%)
Query: 55 HNTRYFRRKLNRLGLIVYGHRDSPVVPVLVF 85
NT Y +KL P++ ++
Sbjct: 316 ENTLYLYKKLKENNFKPVI---EPILNIVAI 343
>3bh1_A UPF0371 protein DIP2346; structural genomics, unknown function,
protein structure INI PSI-2; 2.51A {Corynebacterium
diphtheriae nctc 13129ORGANISM_TAXID}
Length = 507
Score = 27.4 bits (61), Expect = 1.9
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 60 FRRKLNRLGLIVYGHRDSPVVP 81
F +L RLG+ V HR P P
Sbjct: 130 FIERLQRLGIKVSRHRVIPGYP 151
>1p1m_A Hypothetical protein TM0936; putative metal dependent hydrolase,
PSI, protein structure initiative; 1.50A {Thermotoga
maritima} SCOP: b.92.1.4 c.1.9.9 PDB: 2plm_A* 1j6p_A
Length = 406
Score = 26.0 bits (58), Expect = 6.7
Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 95 IGLGVEQTALNDGLSLYESSHLRSANLWNRPHSPSLM 131
+ LG + A N+ L+L+ +R A+L + +P +
Sbjct: 274 VTLGTDGAASNNSLNLFFE--MRLASLLQKAQNPRNL 308
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 26.0 bits (57), Expect = 7.5
Identities = 6/38 (15%), Positives = 15/38 (39%), Gaps = 5/38 (13%)
Query: 2 RLISVLAQNTRYFRRKLNRLGLILYVLFQAQTKPPRSH 39
++ + ++F G+I LF ++ P +
Sbjct: 1477 KVSAREKSAYKFFHN-----GMIYNKLFVSKEHAPYTD 1509
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.142 0.433
Gapped
Lambda K H
0.267 0.0793 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,258,613
Number of extensions: 121191
Number of successful extensions: 312
Number of sequences better than 10.0: 1
Number of HSP's gapped: 308
Number of HSP's successfully gapped: 29
Length of query: 153
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 68
Effective length of database: 4,328,508
Effective search space: 294338544
Effective search space used: 294338544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.1 bits)