RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5049
         (153 letters)



>d1bd0a2 c.1.6.1 (A:12-244) Alanine racemase {Bacillus
          stearothermophilus [TaxId: 1422]}
          Length = 233

 Score = 25.7 bits (55), Expect = 2.3
 Identities = 10/41 (24%), Positives = 14/41 (34%), Gaps = 7/41 (17%)

Query: 50 ISVLAHNTRYFRRKLN---RLGLIV----YGHRDSPVVPVL 83
          +  +  N    RR L     +  +V    YGH D  V    
Sbjct: 3  LDAIYDNVENLRRLLPDDTHIMAVVKANAYGHGDVQVARTA 43


>d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate
           carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 363

 Score = 25.6 bits (56), Expect = 2.7
 Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 2/43 (4%)

Query: 67  LGLIVYGHRDSPVVPVLVFFFSKVGQTSIG--LGVEQTALNDG 107
           +  I++G R    VP++    S      +G  +  E TA  + 
Sbjct: 169 IEGIIFGGRRPAGVPLVYEALSWQHGVFVGAAMRSEATAAAEH 211


>d1vfsa2 c.1.6.1 (A:13-249) Alanine racemase {Streptomyces
          lavendulae [TaxId: 1914]}
          Length = 237

 Score = 25.3 bits (54), Expect = 3.6
 Identities = 9/37 (24%), Positives = 12/37 (32%), Gaps = 6/37 (16%)

Query: 53 LAHNTRYFRRKLNRLGLIV------YGHRDSPVVPVL 83
          +  N R  R +  R  L+       YGH   P     
Sbjct: 5  VRANVRALRARAPRSALMAVVKSNAYGHGAVPCARAA 41


>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase
           (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli
           [TaxId: 562]}
          Length = 383

 Score = 24.1 bits (51), Expect = 8.6
 Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 1/39 (2%)

Query: 46  GIRRISVLAHNTRYFRRKLNRLGLIVYGHRDSPVVPVLV 84
           G  R   LA     FR  +  L   +     S + P++V
Sbjct: 287 GDARREKLAALITRFRAGVQDLPFTL-ADSCSAIQPLIV 324


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.142    0.433 

Gapped
Lambda     K      H
   0.267   0.0681    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 542,109
Number of extensions: 22404
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 7
Length of query: 153
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 75
Effective length of database: 1,336,656
Effective search space: 100249200
Effective search space used: 100249200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (22.8 bits)