BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy505
         (161 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3GK7|A Chain A, Crystal Structure Of 4-Hydroxybutyrate Coa-Transferase
           From Clostridium Aminobutyricum
 pdb|3GK7|B Chain B, Crystal Structure Of 4-Hydroxybutyrate Coa-Transferase
           From Clostridium Aminobutyricum
 pdb|3QDQ|A Chain A, Complex Between 4-Hydroxybutyrate Coa-Transferase From
           Clostridium Aminobutyricum And Coa
          Length = 448

 Score = 27.3 bits (59), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 9/16 (56%), Positives = 13/16 (81%)

Query: 10  TPPNPNGICCLCVNSD 25
           +PP+ NG CC+ V+SD
Sbjct: 124 SPPDHNGFCCVGVSSD 139


>pdb|1VHG|A Chain A, Crystal Structure Of Adp Compounds Hydrolase
 pdb|1VHG|B Chain B, Crystal Structure Of Adp Compounds Hydrolase
          Length = 198

 Score = 26.2 bits (56), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 25/51 (49%)

Query: 47 NLHAKTMIPAHDSPLAALASLSVGTKSGYRLFSLNSIDTLEQIYENSQEDV 97
          N  A  ++P  D  L  +   +VGT+S    FS   ID  E +YE +  ++
Sbjct: 48 NREAVXIVPIVDDHLILIREYAVGTESYELGFSKGLIDPGESVYEAANREL 98


>pdb|1VHZ|A Chain A, Crystal Structure Of Adp Compounds Hydrolase
 pdb|1VHZ|B Chain B, Crystal Structure Of Adp Compounds Hydrolase
          Length = 198

 Score = 26.2 bits (56), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 25/51 (49%)

Query: 47 NLHAKTMIPAHDSPLAALASLSVGTKSGYRLFSLNSIDTLEQIYENSQEDV 97
          N  A  ++P  D  L  +   +VGT+S    FS   ID  E +YE +  ++
Sbjct: 48 NREAVMIVPIVDDHLILIREYAVGTESYELGFSKGLIDPGESVYEAANREL 98


>pdb|1I5J|A Chain A, Nmr Structure Of Human Apolipoprotein C-Ii In The
          Presence Of Sds
 pdb|1SOH|A Chain A, The Structure Of Human Apolipoprotein C-Ii In Dodecyl
          Phosphocholine
 pdb|1O8T|A Chain A, Global Structure And Dynamics Of Human Apolipoprotein
          Cii In Complex With Micelles: Evidence For Increased
          Mobility Of The Helix Involvved In The Activation Of
          Lipoprotein Lipase
          Length = 79

 Score = 26.2 bits (56), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 16/31 (51%)

Query: 45 ADNLHAKTMIPAHDSPLAALASLSVGTKSGY 75
          A NL+ KT +PA D  L  L S S    S Y
Sbjct: 33 AQNLYEKTYLPAVDEKLRDLYSKSTAAMSTY 63


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,865,855
Number of Sequences: 62578
Number of extensions: 128241
Number of successful extensions: 222
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 217
Number of HSP's gapped (non-prelim): 5
length of query: 161
length of database: 14,973,337
effective HSP length: 91
effective length of query: 70
effective length of database: 9,278,739
effective search space: 649511730
effective search space used: 649511730
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)