Query psy505
Match_columns 161
No_of_seqs 169 out of 1190
Neff 8.3
Searched_HMMs 29240
Date Sat Aug 17 00:27:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy505.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/505hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ynn_A Coatomer subunit beta'; 99.9 2.9E-25 9.9E-30 174.0 17.8 148 1-156 3-162 (304)
2 3ow8_A WD repeat-containing pr 99.9 1.1E-24 3.6E-29 172.7 18.4 137 15-156 165-311 (321)
3 4gqb_B Methylosome protein 50; 99.9 7E-25 2.4E-29 176.0 15.8 141 13-156 126-279 (344)
4 2ynn_A Coatomer subunit beta'; 99.9 1.5E-23 5E-28 164.3 18.6 149 3-156 89-249 (304)
5 1got_B GT-beta; complex (GTP-b 99.9 1.7E-23 5.8E-28 166.2 18.7 148 3-156 176-333 (340)
6 1vyh_C Platelet-activating fac 99.9 9.1E-24 3.1E-28 172.2 17.4 139 13-156 107-255 (410)
7 2pbi_B Guanine nucleotide-bind 99.9 1.8E-23 6.1E-28 167.5 17.9 151 2-156 187-347 (354)
8 4ery_A WD repeat-containing pr 99.9 1.3E-22 4.3E-27 158.2 19.7 146 3-156 15-170 (312)
9 3frx_A Guanine nucleotide-bind 99.9 1E-22 3.4E-27 160.7 19.3 146 3-157 99-259 (319)
10 2hes_X YDR267CP; beta-propelle 99.9 6.8E-23 2.3E-27 162.3 18.2 149 3-156 48-220 (330)
11 2pbi_B Guanine nucleotide-bind 99.9 1.2E-22 4.2E-27 162.6 19.8 150 1-156 54-261 (354)
12 4gqb_B Methylosome protein 50; 99.9 2.2E-23 7.7E-28 167.2 15.4 139 2-148 160-310 (344)
13 1vyh_C Platelet-activating fac 99.9 7.3E-23 2.5E-27 166.8 18.2 138 3-148 142-287 (410)
14 4g56_B MGC81050 protein; prote 99.9 4.5E-23 1.5E-27 165.5 16.3 139 13-156 138-333 (357)
15 3ow8_A WD repeat-containing pr 99.9 2.1E-22 7E-27 159.5 17.6 137 15-156 123-269 (321)
16 3frx_A Guanine nucleotide-bind 99.9 4.5E-22 1.5E-26 156.9 19.4 144 4-156 58-217 (319)
17 2pm7_B Protein transport prote 99.9 3.3E-22 1.1E-26 156.1 18.3 133 12-148 7-156 (297)
18 3fm0_A Protein CIAO1; WDR39,SG 99.9 2.8E-22 9.6E-27 159.7 16.7 149 2-156 6-171 (345)
19 1got_B GT-beta; complex (GTP-b 99.9 1.7E-21 5.7E-26 154.7 19.8 147 2-156 46-205 (340)
20 4ery_A WD repeat-containing pr 99.9 1.8E-21 6.3E-26 151.6 19.7 139 13-156 64-213 (312)
21 2hes_X YDR267CP; beta-propelle 99.9 3.4E-22 1.2E-26 158.3 15.5 146 3-156 99-270 (330)
22 2xzm_R RACK1; ribosome, transl 99.9 4.1E-22 1.4E-26 158.2 15.9 139 2-149 12-174 (343)
23 2pm7_B Protein transport prote 99.9 1.8E-21 6.1E-26 151.9 19.1 148 2-156 44-228 (297)
24 3fm0_A Protein CIAO1; WDR39,SG 99.9 7.2E-22 2.4E-26 157.3 16.7 141 12-156 59-215 (345)
25 1nr0_A Actin interacting prote 99.9 8.6E-22 3E-26 168.0 17.6 118 13-134 146-277 (611)
26 1nr0_A Actin interacting prote 99.9 9.6E-22 3.3E-26 167.7 17.9 147 3-157 51-261 (611)
27 1erj_A Transcriptional repress 99.9 2.1E-21 7.2E-26 157.0 18.4 135 16-156 125-277 (393)
28 2xzm_R RACK1; ribosome, transl 99.9 4.1E-21 1.4E-25 152.4 18.7 138 13-156 75-234 (343)
29 3iz6_a 40S ribosomal protein R 99.9 2.4E-21 8.2E-26 156.1 16.5 147 2-156 57-270 (380)
30 3iz6_a 40S ribosomal protein R 99.9 2.1E-21 7.1E-26 156.5 15.6 141 13-156 204-365 (380)
31 2ymu_A WD-40 repeat protein; u 99.9 6.1E-21 2.1E-25 159.3 18.8 144 3-157 418-571 (577)
32 4aow_A Guanine nucleotide-bind 99.9 4.9E-21 1.7E-25 149.2 17.0 149 1-156 28-236 (340)
33 3bg1_A Protein SEC13 homolog; 99.9 4E-22 1.4E-26 157.0 10.5 140 3-148 4-161 (316)
34 2j04_B YDR362CP, TAU91; beta p 99.9 1.7E-21 5.9E-26 165.0 13.9 139 14-156 266-418 (524)
35 1erj_A Transcriptional repress 99.9 1.1E-20 3.6E-25 152.9 18.0 138 13-156 63-228 (393)
36 3mmy_A MRNA export factor; mRN 99.9 2E-20 7E-25 146.4 18.8 139 12-156 37-189 (368)
37 2ymu_A WD-40 repeat protein; u 99.9 8.6E-21 2.9E-25 158.4 17.5 137 2-148 7-150 (577)
38 4h5i_A Guanine nucleotide-exch 99.9 1.2E-20 4E-25 152.0 17.2 139 16-156 135-333 (365)
39 4aez_A CDC20, WD repeat-contai 99.9 3.2E-20 1.1E-24 149.9 19.2 132 13-148 133-270 (401)
40 3dm0_A Maltose-binding peripla 99.9 9.1E-21 3.1E-25 163.3 16.5 139 13-156 429-582 (694)
41 3mkq_A Coatomer beta'-subunit; 99.9 1.3E-20 4.5E-25 163.1 17.5 148 1-156 3-162 (814)
42 3vl1_A 26S proteasome regulato 99.9 3.3E-20 1.1E-24 149.1 18.7 142 12-156 137-312 (420)
43 1gxr_A ESG1, transducin-like e 99.9 6.7E-20 2.3E-24 142.2 19.5 139 12-155 95-244 (337)
44 3gre_A Serine/threonine-protei 99.9 7.6E-21 2.6E-25 154.2 13.7 150 2-156 203-430 (437)
45 2aq5_A Coronin-1A; WD40 repeat 99.9 1.3E-20 4.5E-25 151.9 15.0 136 13-153 80-236 (402)
46 4e54_B DNA damage-binding prot 99.9 3.9E-21 1.3E-25 157.2 11.8 140 13-156 118-272 (435)
47 3f3f_A Nucleoporin SEH1; struc 99.8 4.7E-20 1.6E-24 142.4 16.8 113 13-129 10-145 (351)
48 3bg1_A Protein SEC13 homolog; 99.8 5.4E-21 1.9E-25 150.5 11.5 147 3-156 49-237 (316)
49 3jrp_A Fusion protein of prote 99.8 2.3E-20 7.9E-25 146.9 15.1 138 3-147 3-157 (379)
50 3sfz_A APAF-1, apoptotic pepti 99.8 5E-20 1.7E-24 166.6 19.1 140 12-156 613-764 (1249)
51 3dwl_C Actin-related protein 2 99.8 5.3E-21 1.8E-25 152.0 11.3 140 13-156 54-226 (377)
52 3ei3_B DNA damage-binding prot 99.8 1.1E-19 3.8E-24 145.0 19.1 147 2-156 64-226 (383)
53 3k26_A Polycomb protein EED; W 99.8 4.6E-21 1.6E-25 150.3 10.3 139 13-156 68-250 (366)
54 2j04_B YDR362CP, TAU91; beta p 99.8 1.4E-20 4.7E-25 159.4 13.7 140 15-156 208-376 (524)
55 3dwl_C Actin-related protein 2 99.8 3.3E-21 1.1E-25 153.2 9.1 136 16-156 13-167 (377)
56 1sq9_A Antiviral protein SKI8; 99.8 8.6E-20 2.9E-24 145.4 17.2 132 11-148 183-365 (397)
57 4gga_A P55CDC, cell division c 99.8 4.1E-19 1.4E-23 144.4 21.5 147 3-154 137-339 (420)
58 3f3f_A Nucleoporin SEH1; struc 99.8 7.8E-20 2.7E-24 141.2 16.3 140 13-156 56-327 (351)
59 3dm0_A Maltose-binding peripla 99.8 4.1E-20 1.4E-24 159.3 16.0 140 13-158 471-625 (694)
60 3v7d_B Cell division control p 99.8 1.7E-19 5.7E-24 147.3 18.8 147 3-157 195-372 (464)
61 4g56_B MGC81050 protein; prote 99.8 2.4E-20 8.2E-25 149.6 13.5 142 13-156 41-203 (357)
62 3lrv_A PRE-mRNA-splicing facto 99.8 2.2E-20 7.4E-25 148.1 12.9 131 14-149 125-272 (343)
63 3v7d_B Cell division control p 99.8 4.5E-20 1.6E-24 150.7 14.2 145 2-156 301-452 (464)
64 2w18_A PALB2, fancn, partner a 99.8 5.7E-20 1.9E-24 148.7 14.5 125 25-156 192-347 (356)
65 3zwl_B Eukaryotic translation 99.8 4.3E-19 1.5E-23 138.9 19.0 141 12-156 30-239 (369)
66 4gq1_A NUP37; propeller, trans 99.8 1.6E-19 5.4E-24 146.3 16.2 145 13-159 135-383 (393)
67 3gre_A Serine/threonine-protei 99.8 2.1E-19 7.2E-24 145.7 16.9 135 15-153 169-345 (437)
68 3ei3_B DNA damage-binding prot 99.8 8.5E-19 2.9E-23 139.9 19.3 139 11-156 115-272 (383)
69 2aq5_A Coronin-1A; WD40 repeat 99.8 1.8E-19 6.1E-24 145.2 15.5 139 13-154 130-286 (402)
70 3dw8_B Serine/threonine-protei 99.8 6.6E-20 2.3E-24 148.2 12.8 143 13-159 225-440 (447)
71 3i2n_A WD repeat-containing pr 99.8 3E-19 1E-23 139.7 16.1 142 13-156 64-233 (357)
72 4aow_A Guanine nucleotide-bind 99.8 6.1E-19 2.1E-23 137.3 17.7 137 13-156 170-327 (340)
73 3vl1_A 26S proteasome regulato 99.8 4.9E-20 1.7E-24 148.1 11.7 124 17-145 100-234 (420)
74 2vdu_B TRNA (guanine-N(7)-)-me 99.8 3E-19 1E-23 146.4 16.5 141 13-156 194-373 (450)
75 3mmy_A MRNA export factor; mRN 99.8 3.5E-19 1.2E-23 139.4 15.6 140 13-155 85-335 (368)
76 4ggc_A P55CDC, cell division c 99.8 9.5E-19 3.2E-23 135.0 17.8 142 2-148 56-207 (318)
77 2ovr_B FBW7, F-BOX/WD repeat p 99.8 1.3E-18 4.3E-23 142.0 19.3 143 2-154 270-424 (445)
78 2ovr_B FBW7, F-BOX/WD repeat p 99.8 9.8E-19 3.4E-23 142.6 18.7 144 3-157 110-259 (445)
79 2vdu_B TRNA (guanine-N(7)-)-me 99.8 7.4E-19 2.5E-23 144.0 17.8 146 3-154 139-326 (450)
80 3dw8_B Serine/threonine-protei 99.8 1.8E-19 6.2E-24 145.6 13.9 139 13-156 27-248 (447)
81 3sfz_A APAF-1, apoptotic pepti 99.8 3.2E-19 1.1E-23 161.3 17.0 148 3-158 649-821 (1249)
82 2j04_A TAU60, YPL007P, hypothe 99.8 2.4E-19 8.3E-24 153.0 15.1 137 14-159 85-248 (588)
83 1yfq_A Cell cycle arrest prote 99.8 5.1E-20 1.8E-24 143.8 10.2 146 1-156 1-169 (342)
84 3k26_A Polycomb protein EED; W 99.8 7.9E-19 2.7E-23 137.5 16.6 139 13-156 17-182 (366)
85 4h5i_A Guanine nucleotide-exch 99.8 1.3E-19 4.3E-24 145.9 12.3 112 13-128 218-344 (365)
86 1r5m_A SIR4-interacting protei 99.8 4.2E-19 1.4E-23 141.4 15.2 139 13-156 246-415 (425)
87 2oaj_A Protein SNI1; WD40 repe 99.8 1.5E-19 5.1E-24 161.3 13.9 131 12-146 486-690 (902)
88 1k8k_C P40, ARP2/3 complex 41 99.8 9.2E-19 3.1E-23 137.9 16.9 132 12-148 94-255 (372)
89 1p22_A F-BOX/WD-repeat protein 99.8 1E-18 3.5E-23 142.5 17.7 137 12-157 131-276 (435)
90 1k8k_C P40, ARP2/3 complex 41 99.8 5.4E-19 1.8E-23 139.2 15.4 140 13-156 7-163 (372)
91 1p22_A F-BOX/WD-repeat protein 99.8 1.8E-18 6.2E-23 141.0 18.9 143 3-156 165-315 (435)
92 2pm9_A Protein WEB1, protein t 99.8 2.1E-19 7.1E-24 143.8 13.1 140 13-156 66-236 (416)
93 2oaj_A Protein SNI1; WD40 repe 99.8 1.8E-19 6.1E-24 160.8 14.0 136 16-156 437-651 (902)
94 2w18_A PALB2, fancn, partner a 99.8 1E-19 3.4E-24 147.2 11.1 120 2-125 214-355 (356)
95 1gxr_A ESG1, transducin-like e 99.8 1.8E-18 6E-23 134.1 17.3 138 13-156 140-286 (337)
96 4aez_A CDC20, WD repeat-contai 99.8 2.5E-18 8.5E-23 138.8 18.3 138 13-156 216-370 (401)
97 3zwl_B Eukaryotic translation 99.8 7.2E-18 2.5E-22 131.9 19.5 138 13-156 174-336 (369)
98 2xyi_A Probable histone-bindin 99.8 2.7E-18 9.4E-23 140.2 17.3 146 3-156 173-343 (430)
99 3odt_A Protein DOA1; ubiquitin 99.8 6.2E-18 2.1E-22 130.0 18.3 135 14-156 142-286 (313)
100 3jrp_A Fusion protein of prote 99.8 3.1E-18 1.1E-22 134.7 16.8 132 13-148 54-217 (379)
101 3mkq_A Coatomer beta'-subunit; 99.8 1.7E-18 5.8E-23 149.8 16.6 147 3-156 47-207 (814)
102 3lrv_A PRE-mRNA-splicing facto 99.8 1.5E-18 5E-23 137.5 14.8 137 16-159 78-238 (343)
103 3vu4_A KMHSV2; beta-propeller 99.8 1E-18 3.6E-23 139.7 13.8 109 14-129 139-273 (355)
104 4e54_B DNA damage-binding prot 99.8 1.7E-19 5.8E-24 147.5 9.3 120 11-135 206-335 (435)
105 1r5m_A SIR4-interacting protei 99.8 6.9E-19 2.4E-23 140.2 11.8 140 9-154 40-223 (425)
106 4gq1_A NUP37; propeller, trans 99.8 1.3E-18 4.6E-23 140.9 13.5 106 23-133 98-224 (393)
107 2xyi_A Probable histone-bindin 99.8 4.7E-18 1.6E-22 138.8 16.8 141 12-156 229-400 (430)
108 4gga_A P55CDC, cell division c 99.8 1.8E-17 6.3E-22 134.6 20.1 139 13-157 229-386 (420)
109 2pm9_A Protein WEB1, protein t 99.8 1.7E-18 5.8E-23 138.5 13.6 140 13-156 164-327 (416)
110 1sq9_A Antiviral protein SKI8; 99.8 5.9E-18 2E-22 134.8 16.0 148 3-156 54-254 (397)
111 3vu4_A KMHSV2; beta-propeller 99.8 1.1E-17 3.7E-22 133.8 17.6 134 15-156 101-261 (355)
112 4a11_B DNA excision repair pro 99.8 4.8E-18 1.6E-22 134.8 15.2 138 13-156 42-208 (408)
113 2oit_A Nucleoporin 214KDA; NH2 99.8 1.9E-18 6.6E-23 142.7 12.6 134 14-152 92-255 (434)
114 3jro_A Fusion protein of prote 99.8 3E-18 1E-22 149.7 14.5 131 13-147 8-155 (753)
115 4ggc_A P55CDC, cell division c 99.8 4.6E-17 1.6E-21 125.6 19.5 139 13-157 149-306 (318)
116 3i2n_A WD repeat-containing pr 99.8 1.1E-17 3.7E-22 130.8 15.3 144 13-156 17-189 (357)
117 2j04_A TAU60, YPL007P, hypothe 99.8 7E-18 2.4E-22 144.0 14.8 134 14-154 129-284 (588)
118 3odt_A Protein DOA1; ubiquitin 99.8 5.7E-17 2E-21 124.5 18.2 144 1-156 8-164 (313)
119 4a11_B DNA excision repair pro 99.8 2.9E-17 1E-21 130.3 16.6 137 16-156 143-355 (408)
120 1pgu_A Actin interacting prote 99.8 3.2E-17 1.1E-21 136.9 16.5 139 13-156 115-273 (615)
121 3jro_A Fusion protein of prote 99.7 4E-17 1.4E-21 142.6 17.0 139 3-148 45-215 (753)
122 1pgu_A Actin interacting prote 99.7 1.1E-16 3.6E-21 133.8 17.9 139 13-156 159-318 (615)
123 1l0q_A Surface layer protein; 99.7 4.5E-16 1.5E-20 124.0 18.9 138 2-149 23-169 (391)
124 3bws_A Protein LP49; two-domai 99.7 2.6E-16 8.9E-21 126.9 15.8 133 17-154 125-272 (433)
125 1l0q_A Surface layer protein; 99.7 1.8E-15 6.2E-20 120.5 19.8 133 16-154 75-218 (391)
126 1yfq_A Cell cycle arrest prote 99.7 2.1E-16 7E-21 123.2 12.7 138 13-156 100-272 (342)
127 3bws_A Protein LP49; two-domai 99.7 2.5E-15 8.4E-20 121.2 15.9 134 14-153 169-320 (433)
128 2hqs_A Protein TOLB; TOLB, PAL 99.5 9.7E-13 3.3E-17 107.4 16.0 132 15-154 179-329 (415)
129 2oit_A Nucleoporin 214KDA; NH2 99.5 5.9E-13 2E-17 109.8 12.9 112 13-128 148-279 (434)
130 1nir_A Nitrite reductase; hemo 99.4 6.5E-12 2.2E-16 106.4 15.5 121 21-148 144-290 (543)
131 2hqs_A Protein TOLB; TOLB, PAL 99.4 9.2E-12 3.1E-16 101.6 15.3 135 14-155 222-373 (415)
132 3vgz_A Uncharacterized protein 99.4 1.7E-11 5.8E-16 95.6 16.2 133 17-156 187-334 (353)
133 1nir_A Nitrite reductase; hemo 99.4 2E-11 6.8E-16 103.4 16.1 127 2-135 213-363 (543)
134 2ecf_A Dipeptidyl peptidase IV 99.3 9.8E-12 3.4E-16 107.0 13.2 136 14-154 36-227 (741)
135 1jmx_B Amine dehydrogenase; ox 99.3 3.7E-12 1.3E-16 99.1 9.4 138 20-159 5-169 (349)
136 3vgz_A Uncharacterized protein 99.3 5E-11 1.7E-15 92.9 15.8 138 16-154 142-290 (353)
137 2ojh_A Uncharacterized protein 99.3 1.9E-11 6.4E-16 92.1 12.6 132 14-154 41-191 (297)
138 2ojh_A Uncharacterized protein 99.3 1.8E-11 6E-16 92.3 12.3 136 16-155 130-291 (297)
139 1xfd_A DIP, dipeptidyl aminope 99.3 6.1E-12 2.1E-16 107.8 10.9 133 16-149 62-266 (723)
140 3u4y_A Uncharacterized protein 99.3 6.4E-11 2.2E-15 92.0 15.8 128 23-154 6-146 (331)
141 1xfd_A DIP, dipeptidyl aminope 99.3 2.3E-12 8E-17 110.4 7.1 133 17-154 19-191 (723)
142 3u4y_A Uncharacterized protein 99.3 1.8E-10 6.2E-15 89.4 16.6 131 20-153 89-238 (331)
143 1ri6_A Putative isomerase YBHE 99.3 1.3E-10 4.6E-15 89.8 14.7 138 16-154 130-295 (343)
144 1ri6_A Putative isomerase YBHE 99.3 5.1E-11 1.7E-15 92.2 12.1 134 16-154 39-196 (343)
145 1pby_B Quinohemoprotein amine 99.2 9.5E-11 3.3E-15 90.4 12.1 129 28-159 3-157 (337)
146 3hfq_A Uncharacterized protein 99.2 1.1E-09 3.7E-14 85.9 18.2 135 18-153 43-204 (347)
147 1jmx_B Amine dehydrogenase; ox 99.2 2.4E-10 8.2E-15 88.7 13.4 113 16-135 44-183 (349)
148 2ecf_A Dipeptidyl peptidase IV 99.2 4.4E-11 1.5E-15 102.9 9.8 134 16-154 110-304 (741)
149 1pby_B Quinohemoprotein amine 99.2 2.5E-10 8.5E-15 88.1 12.8 131 17-153 84-297 (337)
150 3pe7_A Oligogalacturonate lyas 99.2 1.3E-09 4.4E-14 86.3 17.1 133 20-154 41-207 (388)
151 1k32_A Tricorn protease; prote 99.2 2.3E-10 7.8E-15 102.9 14.2 132 16-155 339-491 (1045)
152 3scy_A Hypothetical bacterial 99.2 3.8E-09 1.3E-13 83.3 17.9 136 17-154 157-324 (361)
153 2z3z_A Dipeptidyl aminopeptida 99.1 2E-10 6.8E-15 98.4 10.8 130 16-149 122-323 (706)
154 1xip_A Nucleoporin NUP159; bet 99.1 1.2E-09 4.2E-14 89.4 15.0 121 13-148 87-224 (388)
155 3o4h_A Acylamino-acid-releasin 99.1 3.1E-10 1.1E-14 95.5 11.6 127 15-148 22-160 (582)
156 2z3z_A Dipeptidyl aminopeptida 99.1 3.5E-10 1.2E-14 96.9 11.8 134 15-155 82-277 (706)
157 3o4h_A Acylamino-acid-releasin 99.1 3.7E-10 1.3E-14 95.0 11.0 122 17-149 114-257 (582)
158 1z68_A Fibroblast activation p 99.1 1E-10 3.5E-15 100.5 7.7 126 19-154 20-187 (719)
159 1k32_A Tricorn protease; prote 99.1 3.2E-10 1.1E-14 102.0 10.7 131 16-154 297-439 (1045)
160 3hfq_A Uncharacterized protein 99.1 1.2E-08 4.2E-13 79.8 18.2 137 16-155 142-305 (347)
161 1z68_A Fibroblast activation p 99.1 3.9E-11 1.3E-15 103.1 4.1 134 16-152 61-267 (719)
162 3fvz_A Peptidyl-glycine alpha- 99.1 5.2E-09 1.8E-13 82.4 15.8 141 16-160 144-317 (329)
163 1q7f_A NHL, brain tumor CG1071 99.0 4.7E-08 1.6E-12 74.6 18.3 133 15-153 121-267 (286)
164 3fvz_A Peptidyl-glycine alpha- 99.0 4.8E-08 1.6E-12 76.8 18.1 136 16-156 92-258 (329)
165 1jof_A Carboxy-CIS,CIS-muconat 99.0 3.7E-08 1.3E-12 78.3 17.3 133 17-154 42-211 (365)
166 3scy_A Hypothetical bacterial 99.0 7.5E-09 2.6E-13 81.6 13.0 130 14-146 210-360 (361)
167 4a5s_A Dipeptidyl peptidase 4 99.0 3.8E-09 1.3E-13 91.7 10.8 106 17-131 19-145 (740)
168 4a5s_A Dipeptidyl peptidase 4 98.9 4.2E-09 1.4E-13 91.5 10.4 127 20-149 67-271 (740)
169 2dg1_A DRP35, lactonase; beta 98.9 2.4E-07 8.4E-12 71.9 19.1 136 16-154 46-200 (333)
170 3dsm_A Uncharacterized protein 98.9 1.3E-07 4.5E-12 74.5 17.4 148 2-159 75-247 (328)
171 1q7f_A NHL, brain tumor CG1071 98.9 1.5E-07 5.2E-12 71.7 16.4 140 14-160 29-189 (286)
172 3azo_A Aminopeptidase; POP fam 98.9 2.3E-08 8E-13 84.9 12.2 131 14-149 129-305 (662)
173 1xip_A Nucleoporin NUP159; bet 98.8 1.2E-07 4.1E-12 77.5 13.8 128 16-156 39-181 (388)
174 2oiz_A Aromatic amine dehydrog 98.8 3.6E-07 1.2E-11 73.1 15.8 138 17-155 110-324 (361)
175 3pe7_A Oligogalacturonate lyas 98.8 1.4E-07 4.8E-12 74.5 13.2 129 19-153 85-255 (388)
176 1jof_A Carboxy-CIS,CIS-muconat 98.8 7.6E-07 2.6E-11 70.7 17.5 134 18-153 86-272 (365)
177 3c5m_A Oligogalacturonate lyas 98.7 1.3E-07 4.5E-12 74.5 11.3 137 17-154 38-207 (396)
178 2bkl_A Prolyl endopeptidase; m 98.7 4.5E-07 1.5E-11 78.1 14.1 136 15-152 121-286 (695)
179 3azo_A Aminopeptidase; POP fam 98.7 1.3E-07 4.4E-12 80.3 10.4 126 20-149 84-253 (662)
180 3e5z_A Putative gluconolactona 98.6 1.3E-06 4.5E-11 66.9 13.8 139 17-160 117-281 (296)
181 2gop_A Trilobed protease; beta 98.6 1.4E-06 4.9E-11 67.7 13.2 125 15-153 15-186 (347)
182 2dg1_A DRP35, lactonase; beta 98.6 4.3E-07 1.5E-11 70.5 10.0 126 17-150 8-147 (333)
183 2xdw_A Prolyl endopeptidase; a 98.5 9E-07 3.1E-11 76.4 12.7 110 16-127 126-268 (710)
184 3dsm_A Uncharacterized protein 98.5 7.5E-06 2.6E-10 64.3 17.0 133 18-155 47-190 (328)
185 3no2_A Uncharacterized protein 98.5 3.3E-06 1.1E-10 65.3 13.2 127 16-149 38-176 (276)
186 3no2_A Uncharacterized protein 98.5 4.7E-06 1.6E-10 64.4 13.7 118 23-148 3-135 (276)
187 3e5z_A Putative gluconolactona 98.5 2.9E-06 9.8E-11 65.0 12.2 127 17-149 30-183 (296)
188 3c5m_A Oligogalacturonate lyas 98.4 5.5E-06 1.9E-10 65.1 13.9 128 20-153 86-255 (396)
189 1rwi_B Serine/threonine-protei 98.4 4.2E-06 1.4E-10 62.8 12.4 133 15-153 108-250 (270)
190 1qks_A Cytochrome CD1 nitrite 98.4 1.9E-05 6.3E-10 67.4 17.2 120 22-148 163-308 (567)
191 3g4e_A Regucalcin; six bladed 98.4 4.1E-05 1.4E-09 59.0 17.6 141 15-155 98-261 (297)
192 2xdw_A Prolyl endopeptidase; a 98.4 2.3E-05 7.7E-10 67.6 17.3 135 13-148 231-390 (710)
193 2z2n_A Virginiamycin B lyase; 98.3 8.6E-05 2.9E-09 55.9 17.5 138 15-160 99-250 (299)
194 1rwi_B Serine/threonine-protei 98.3 9.5E-06 3.3E-10 60.8 11.8 138 16-160 68-217 (270)
195 1yr2_A Prolyl oligopeptidase; 98.3 7.2E-06 2.5E-10 71.2 11.7 111 16-128 164-304 (741)
196 1pjx_A Dfpase, DIISOPROPYLFLUO 98.3 4.3E-05 1.5E-09 58.3 14.9 141 16-160 118-294 (314)
197 2z2n_A Virginiamycin B lyase; 98.3 0.00013 4.5E-09 54.9 17.3 133 14-154 14-158 (299)
198 2oiz_A Aromatic amine dehydrog 98.2 1E-05 3.4E-10 64.6 10.9 95 37-133 30-146 (361)
199 1pjx_A Dfpase, DIISOPROPYLFLUO 98.1 7.2E-05 2.5E-09 57.0 13.8 132 17-153 20-193 (314)
200 2gop_A Trilobed protease; beta 98.1 3.5E-05 1.2E-09 59.7 11.9 126 16-155 172-318 (347)
201 3iuj_A Prolyl endopeptidase; h 98.1 8.7E-05 3E-09 64.1 15.3 138 15-154 129-298 (693)
202 2qc5_A Streptogramin B lactona 98.1 0.00056 1.9E-08 51.3 18.2 132 15-154 20-163 (300)
203 1yr2_A Prolyl oligopeptidase; 98.1 9.8E-05 3.3E-09 64.0 15.3 133 13-148 266-417 (741)
204 2hz6_A Endoplasmic reticulum t 98.0 9.1E-07 3.1E-11 71.1 1.2 106 25-136 8-120 (369)
205 2hz6_A Endoplasmic reticulum t 98.0 6.3E-07 2.2E-11 72.0 0.1 103 24-135 47-157 (369)
206 2bkl_A Prolyl endopeptidase; m 98.0 8.1E-05 2.8E-09 64.1 12.9 131 13-148 225-373 (695)
207 2iwa_A Glutamine cyclotransfer 98.0 0.0014 4.8E-08 50.7 18.6 132 19-155 70-225 (266)
208 2qe8_A Uncharacterized protein 98.0 9.7E-05 3.3E-09 58.2 12.2 117 16-134 18-161 (343)
209 3hrp_A Uncharacterized protein 98.0 0.00073 2.5E-08 54.9 17.6 139 16-161 220-406 (409)
210 2qc5_A Streptogramin B lactona 98.0 0.0015 5E-08 49.0 17.9 138 15-160 104-255 (300)
211 3nol_A Glutamine cyclotransfer 98.0 0.0025 8.5E-08 49.3 19.3 132 20-156 92-245 (262)
212 2iwa_A Glutamine cyclotransfer 98.0 0.0031 1.1E-07 48.8 19.9 145 2-153 10-167 (266)
213 1qks_A Cytochrome CD1 nitrite 98.0 0.00026 9E-09 60.3 14.8 127 2-135 231-381 (567)
214 3g4e_A Regucalcin; six bladed 97.9 0.0022 7.7E-08 49.1 17.8 131 19-154 17-167 (297)
215 2ghs_A AGR_C_1268P; regucalcin 97.9 0.001 3.5E-08 51.9 15.6 131 18-154 52-197 (326)
216 3nok_A Glutaminyl cyclase; bet 97.8 0.0036 1.2E-07 48.6 18.1 132 20-156 101-255 (268)
217 3sjl_D Methylamine dehydrogena 97.8 0.00044 1.5E-08 56.3 13.5 116 19-136 37-178 (386)
218 2mad_H Methylamine dehydrogena 97.8 0.0036 1.2E-07 50.2 18.8 37 118-154 298-336 (373)
219 2qe8_A Uncharacterized protein 97.8 0.00023 8E-09 55.9 11.4 138 16-156 121-309 (343)
220 3nok_A Glutaminyl cyclase; bet 97.8 0.0049 1.7E-07 47.8 18.3 108 18-135 58-172 (268)
221 2ghs_A AGR_C_1268P; regucalcin 97.8 0.0025 8.6E-08 49.7 16.9 137 15-155 134-291 (326)
222 3hrp_A Uncharacterized protein 97.8 0.0011 3.7E-08 53.9 14.9 135 20-160 176-349 (409)
223 3dr2_A Exported gluconolactona 97.8 0.0011 3.7E-08 51.0 14.1 132 18-155 48-207 (305)
224 3dr2_A Exported gluconolactona 97.7 0.001 3.5E-08 51.1 13.3 138 17-161 133-302 (305)
225 3nol_A Glutamine cyclotransfer 97.7 0.0069 2.4E-07 46.8 17.4 123 2-135 32-163 (262)
226 3mbr_X Glutamine cyclotransfer 97.7 0.011 3.8E-07 45.1 19.5 133 19-156 69-224 (243)
227 2ece_A 462AA long hypothetical 97.6 0.0005 1.7E-08 57.2 10.8 124 24-148 93-263 (462)
228 2mad_H Methylamine dehydrogena 97.6 0.0037 1.3E-07 50.1 15.4 112 21-136 27-166 (373)
229 1mda_H Methylamine dehydrogena 97.4 0.0023 8E-08 51.6 12.1 51 1-57 56-115 (368)
230 3mbr_X Glutamine cyclotransfer 97.4 0.027 9.2E-07 43.0 20.5 112 17-135 23-141 (243)
231 3sjl_D Methylamine dehydrogena 97.3 0.0081 2.8E-07 48.9 14.5 70 75-148 313-384 (386)
232 3q7m_A Lipoprotein YFGL, BAMB; 97.3 0.0059 2E-07 47.9 13.3 105 25-137 53-172 (376)
233 3c75_H MADH, methylamine dehyd 97.2 0.013 4.5E-07 48.2 14.1 97 38-136 99-218 (426)
234 3q7m_A Lipoprotein YFGL, BAMB; 97.2 0.039 1.3E-06 43.1 16.4 126 25-156 143-286 (376)
235 3iuj_A Prolyl endopeptidase; h 97.1 0.0045 1.5E-07 53.3 11.5 130 14-148 233-381 (693)
236 1kb0_A Quinohemoprotein alcoho 97.1 0.0057 1.9E-07 52.9 12.0 60 74-138 457-518 (677)
237 3c75_H MADH, methylamine dehyd 97.1 0.032 1.1E-06 45.8 15.8 32 117-148 349-380 (426)
238 1yiq_A Quinohemoprotein alcoho 97.0 0.0011 3.9E-08 57.4 6.9 71 37-109 454-530 (689)
239 1yiq_A Quinohemoprotein alcoho 97.0 0.0085 2.9E-07 51.9 12.1 48 39-86 276-342 (689)
240 1fwx_A Nitrous oxide reductase 96.9 0.025 8.5E-07 48.5 14.1 143 1-150 122-343 (595)
241 3hxj_A Pyrrolo-quinoline quino 96.9 0.011 3.9E-07 44.9 10.8 119 25-155 107-233 (330)
242 1fwx_A Nitrous oxide reductase 96.9 0.0063 2.2E-07 52.2 9.9 125 1-135 185-379 (595)
243 3hxj_A Pyrrolo-quinoline quino 96.8 0.017 5.7E-07 43.9 11.0 131 18-159 140-278 (330)
244 2xe4_A Oligopeptidase B; hydro 96.7 0.019 6.4E-07 50.1 11.8 138 16-155 175-338 (751)
245 1kb0_A Quinohemoprotein alcoho 96.5 0.0043 1.5E-07 53.7 6.5 69 37-108 456-531 (677)
246 2fp8_A Strictosidine synthase; 96.4 0.11 3.9E-06 39.8 13.6 139 18-160 22-211 (322)
247 1flg_A Protein (quinoprotein e 96.1 0.11 3.7E-06 44.2 13.0 66 73-142 465-531 (582)
248 1kv9_A Type II quinohemoprotei 96.1 0.18 6.2E-06 43.4 14.4 48 39-86 271-337 (668)
249 2ece_A 462AA long hypothetical 96.1 0.23 7.8E-06 41.3 14.1 109 20-128 143-290 (462)
250 4a2l_A BT_4663, two-component 95.5 0.54 1.8E-05 40.8 14.9 134 15-156 406-562 (795)
251 1mda_H Methylamine dehydrogena 95.4 0.039 1.3E-06 44.4 6.9 71 73-147 294-366 (368)
252 2ad6_A Methanol dehydrogenase 95.2 0.22 7.5E-06 42.1 11.4 64 72-139 442-506 (571)
253 3amr_A 3-phytase; beta-propell 95.2 0.93 3.2E-05 36.3 14.6 141 12-156 128-309 (355)
254 1npe_A Nidogen, entactin; glyc 95.1 0.71 2.4E-05 34.1 18.0 135 16-155 37-186 (267)
255 4a2l_A BT_4663, two-component 95.0 0.9 3.1E-05 39.4 14.8 133 16-155 358-516 (795)
256 1npe_A Nidogen, entactin; glyc 94.9 0.81 2.8E-05 33.8 17.8 135 16-155 80-226 (267)
257 2ad6_A Methanol dehydrogenase 94.7 0.09 3.1E-06 44.5 7.5 52 37-89 443-501 (571)
258 1kv9_A Type II quinohemoprotei 94.6 0.41 1.4E-05 41.1 11.6 107 25-135 66-195 (668)
259 3amr_A 3-phytase; beta-propell 94.2 1.7 5.9E-05 34.8 14.5 125 25-156 39-200 (355)
260 1k3i_A Galactose oxidase precu 93.9 0.49 1.7E-05 40.3 10.4 109 19-129 190-325 (656)
261 1flg_A Protein (quinoprotein e 93.6 0.14 4.9E-06 43.4 6.5 52 37-89 465-523 (582)
262 3v9f_A Two-component system se 93.5 2.1 7.2E-05 36.9 13.9 134 16-155 364-513 (781)
263 2fp8_A Strictosidine synthase; 92.4 2.8 9.5E-05 31.8 15.4 137 17-159 128-307 (322)
264 3tc9_A Hypothetical hydrolase; 92.0 4.1 0.00014 32.9 15.3 135 19-160 141-296 (430)
265 3pbp_A Nucleoporin NUP82; beta 91.6 2.5 8.6E-05 34.9 11.1 63 17-82 68-158 (452)
266 1w6s_A Methanol dehydrogenase 91.5 2.4 8.2E-05 36.1 11.4 63 72-138 451-514 (599)
267 3v64_C Agrin; beta propeller, 90.9 4.7 0.00016 31.4 17.0 134 16-154 74-221 (349)
268 2xzh_A Clathrin heavy chain 1; 90.7 5.6 0.00019 31.9 17.3 126 16-145 153-309 (365)
269 2xe4_A Oligopeptidase B; hydro 90.5 8.1 0.00028 33.4 15.2 107 17-125 273-398 (751)
270 3v9f_A Two-component system se 90.2 8.3 0.00028 33.2 13.9 136 15-156 313-469 (781)
271 2p4o_A Hypothetical protein; p 90.2 4.8 0.00016 30.3 15.9 108 15-128 32-148 (306)
272 3v65_B Low-density lipoprotein 89.8 6.2 0.00021 31.2 17.2 134 16-154 117-264 (386)
273 1w6s_A Methanol dehydrogenase 89.3 0.88 3E-05 38.8 6.8 52 37-89 452-510 (599)
274 3ei3_A DNA damage-binding prot 89.2 13 0.00046 34.1 15.6 111 38-154 807-943 (1158)
275 2xzh_A Clathrin heavy chain 1; 88.0 9 0.00031 30.7 12.5 78 75-159 51-129 (365)
276 4gq2_M Nucleoporin NUP120; bet 87.5 1.5 5.1E-05 39.4 7.3 36 98-135 237-274 (950)
277 2xbg_A YCF48-like protein; pho 87.4 8.2 0.00028 29.6 13.6 140 15-159 163-316 (327)
278 1bpo_A Protein (clathrin); cla 87.3 12 0.0004 31.2 17.4 126 16-145 152-308 (494)
279 4gq2_M Nucleoporin NUP120; bet 87.0 1.8 6.2E-05 38.9 7.6 42 12-55 233-274 (950)
280 3kya_A Putative phosphatase; s 86.4 12 0.00041 31.1 11.9 60 101-160 251-336 (496)
281 2p4o_A Hypothetical protein; p 85.5 9.8 0.00033 28.5 14.6 86 66-155 181-277 (306)
282 1bpo_A Protein (clathrin); cla 84.1 15 0.0005 30.7 11.0 78 75-159 50-128 (494)
283 4hw6_A Hypothetical protein, I 80.6 21 0.0007 28.7 14.4 59 67-126 243-303 (433)
284 3m0c_C LDL receptor, low-densi 80.2 30 0.001 30.4 19.6 134 15-154 424-576 (791)
285 4fhn_B Nucleoporin NUP120; pro 79.9 1.1 3.9E-05 40.9 3.3 40 14-55 237-276 (1139)
286 4hw6_A Hypothetical protein, I 79.9 22 0.00075 28.6 17.4 139 19-161 232-429 (433)
287 3pbp_A Nucleoporin NUP82; beta 78.9 26 0.00089 28.9 11.7 121 25-149 31-191 (452)
288 1n7d_A LDL receptor, low-densi 78.9 9.7 0.00033 32.8 8.7 130 19-154 457-601 (699)
289 1ijq_A LDL receptor, low-densi 78.9 19 0.00065 27.3 19.0 134 17-155 32-183 (316)
290 3v64_C Agrin; beta propeller, 75.7 26 0.00087 27.1 16.9 130 19-154 120-262 (349)
291 3p5b_L Low density lipoprotein 75.3 28 0.00097 27.5 18.9 135 15-154 112-264 (400)
292 3tc9_A Hypothetical hydrolase; 74.7 31 0.0011 27.6 11.2 106 16-126 180-300 (430)
293 3f7f_A Nucleoporin NUP120; nuc 73.7 7.1 0.00024 34.2 6.4 36 99-136 224-259 (729)
294 3qqz_A Putative uncharacterize 72.1 29 0.00098 26.1 18.4 139 12-160 70-248 (255)
295 3v65_B Low-density lipoprotein 71.7 34 0.0012 26.8 15.7 129 20-154 164-305 (386)
296 2ism_A Putative oxidoreductase 71.5 21 0.0007 27.7 8.2 53 100-155 34-97 (352)
297 2xbg_A YCF48-like protein; pho 71.5 31 0.0011 26.2 9.7 106 14-125 204-320 (327)
298 2p9w_A MAL S 1 allergenic prot 70.6 37 0.0013 26.7 10.5 111 16-129 64-217 (334)
299 1n7d_A LDL receptor, low-densi 69.9 12 0.00041 32.3 7.0 115 19-135 500-622 (699)
300 3m0c_C LDL receptor, low-densi 66.6 67 0.0023 28.2 18.4 131 19-154 475-619 (791)
301 2be1_A Serine/threonine-protei 66.3 22 0.00074 28.0 7.3 96 37-136 19-139 (339)
302 4fhn_B Nucleoporin NUP120; pro 65.3 2.9 9.9E-05 38.2 2.3 26 108-135 251-276 (1139)
303 3a9g_A Putative uncharacterize 65.1 28 0.00097 27.0 7.8 54 100-155 32-95 (354)
304 3f7f_A Nucleoporin NUP120; nuc 64.9 9.2 0.00032 33.5 5.2 36 17-56 224-259 (729)
305 3das_A Putative oxidoreductase 61.2 51 0.0017 25.9 8.6 48 100-148 35-90 (347)
306 3sov_A LRP-6, low-density lipo 56.8 63 0.0021 24.6 16.9 130 19-154 83-225 (318)
307 1k3i_A Galactose oxidase precu 56.2 28 0.00096 29.3 6.7 63 20-83 248-324 (656)
308 1ijq_A LDL receptor, low-densi 55.3 64 0.0022 24.2 18.2 130 19-154 81-225 (316)
309 1xi4_A Clathrin heavy chain; a 48.8 47 0.0016 31.8 7.2 107 19-129 70-190 (1630)
310 1cru_A Protein (soluble quinop 47.8 67 0.0023 26.0 7.5 55 100-154 30-98 (454)
311 3ott_A Two-component system se 46.4 1.4E+02 0.0046 25.4 12.5 108 16-130 473-589 (758)
312 3p5b_L Low density lipoprotein 42.7 1.2E+02 0.0041 23.7 18.8 133 16-154 160-307 (400)
313 3qqz_A Putative uncharacterize 42.5 1E+02 0.0035 22.9 14.2 99 54-156 22-141 (255)
314 1xi4_A Clathrin heavy chain; a 41.6 28 0.00097 33.3 4.6 78 75-159 50-128 (1630)
315 4a0p_A LRP6, LRP-6, low-densit 38.2 1.8E+02 0.0062 24.5 19.3 135 16-155 38-185 (628)
316 3kya_A Putative phosphatase; s 38.0 1.7E+02 0.0058 24.2 13.0 108 15-125 186-339 (496)
317 3sre_A PON1, serum paraoxonase 37.7 1.5E+02 0.005 23.3 17.5 135 16-154 51-239 (355)
318 3ott_A Two-component system se 37.3 1.9E+02 0.0065 24.5 12.8 107 16-130 64-177 (758)
319 3sbq_A Nitrous-oxide reductase 36.7 1.6E+02 0.0053 25.4 8.0 88 11-128 322-409 (638)
320 3ei3_A DNA damage-binding prot 35.6 2.6E+02 0.009 25.6 19.4 95 38-136 492-600 (1158)
321 2xn4_A Kelch-like protein 2; s 32.7 1.4E+02 0.0049 21.6 9.5 103 25-129 155-278 (302)
322 3pg0_A Threefoil; symmetric de 32.6 1.1E+02 0.0038 20.4 9.3 8 40-47 53-60 (165)
323 2be1_A Serine/threonine-protei 32.0 1.2E+02 0.004 23.7 6.4 63 66-131 12-80 (339)
324 2p9w_A MAL S 1 allergenic prot 31.8 1.8E+02 0.0063 22.7 10.1 37 117-153 99-152 (334)
325 3q6k_A 43.2 kDa salivary prote 28.9 2.2E+02 0.0075 22.6 10.3 73 75-148 125-230 (381)
326 2vpj_A Kelch-like protein 12; 27.9 1.7E+02 0.0059 21.1 9.9 103 25-129 159-280 (301)
327 3u12_A USP37 protein; structur 27.4 1.5E+02 0.0052 20.3 7.7 32 125-156 58-94 (141)
328 4a0p_A LRP6, LRP-6, low-densit 26.1 2.9E+02 0.01 23.2 18.3 129 19-154 84-224 (628)
329 4f7g_A Talin-1; alpha-helix bu 24.9 1.7E+02 0.0059 20.8 5.8 39 118-157 152-190 (222)
330 1mix_A Talin; focal adhesion, 23.9 1.9E+02 0.0063 20.1 6.1 39 118-157 141-179 (206)
331 3d8d_A Amyloid beta A4 precurs 23.9 71 0.0024 22.1 3.3 19 37-55 63-81 (148)
332 3sov_A LRP-6, low-density lipo 21.4 2.6E+02 0.009 21.0 16.5 133 17-154 37-184 (318)
No 1
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.94 E-value=2.9e-25 Score=173.95 Aligned_cols=148 Identities=13% Similarity=0.174 Sum_probs=124.7
Q ss_pred CcceEEecCCCCCCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee------eEEEecCCc
Q psy505 1 MKVLHTIRDTPPNPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA------SLSVGTKSG 74 (161)
Q Consensus 1 ~~~~~~~~~~~~~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~------~lasgs~dg 74 (161)
|++.+++ ..+. ..|.+++|+||+.++++++. ||+|+|||+.+++++..+++|..+|.+++ +|++|+.|+
T Consensus 3 l~~~~~~-~~h~--~~V~~~~fsp~~~~l~s~~~--dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~ 77 (304)
T 2ynn_A 3 LDIKKTF-SNRS--DRVKGIDFHPTEPWVLTTLY--SGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF 77 (304)
T ss_dssp CCCEEEE-EEEC--SCEEEEEECSSSSEEEEEET--TSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTS
T ss_pred ceeEEee-cCCC--CceEEEEECCCCCEEEEEcC--CCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCC
Confidence 4567788 4444 45999999999999999776 99999999999999999999999999998 899999999
Q ss_pred -eEEEEeCCcCceeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeE-EEEE-ecCceEEEEECCc---
Q psy505 75 -YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEI-CNYS-FSNTILAVKLNRK--- 148 (161)
Q Consensus 75 -iriwd~~~~~~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i-~~l~-~~~~V~~v~~~~~--- 148 (161)
||+||+++++++ ..+.+|... |.+++|+|++..+++++.|++|+|||++++..+ ..+. |...|.+++|+|+
T Consensus 78 ~i~vwd~~~~~~~-~~~~~h~~~--v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~ 154 (304)
T 2ynn_A 78 RIRVFNYNTGEKV-VDFEAHPDY--IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS 154 (304)
T ss_dssp EEEEEETTTCCEE-EEEECCSSC--EEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTT
T ss_pred EEEEEECCCCcEE-EEEeCCCCc--EEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCC
Confidence 999999998866 466788754 778899999988899999999999999988554 4454 6789999999983
Q ss_pred EEEEEecc
Q psy505 149 KEEEEDEE 156 (161)
Q Consensus 149 ~~vv~~~~ 156 (161)
.++....|
T Consensus 155 ~l~sgs~D 162 (304)
T 2ynn_A 155 TFASGCLD 162 (304)
T ss_dssp EEEEEETT
T ss_pred EEEEEeCC
Confidence 56666555
No 2
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.93 E-value=1.1e-24 Score=172.67 Aligned_cols=137 Identities=18% Similarity=0.260 Sum_probs=121.5
Q ss_pred ceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee------eEEEecCCc-eEEEEeCCcCcee
Q psy505 15 NGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA------SLSVGTKSG-YRLFSLNSIDTLE 87 (161)
Q Consensus 15 ~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~------~lasgs~dg-iriwd~~~~~~~~ 87 (161)
..+.+++++|||.++|+++. ||.|++||+++++++.++++|..+|++++ +|++|+.|| |+|||+++++..
T Consensus 165 ~~v~~~~~spdg~~lasg~~--dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~- 241 (321)
T 3ow8_A 165 KFILSIAYSPDGKYLASGAI--DGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLA- 241 (321)
T ss_dssp SCEEEEEECTTSSEEEEEET--TSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEE-
T ss_pred ceEEEEEECCCCCEEEEEcC--CCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCccee-
Confidence 45889999999999999776 99999999999999999999999999999 899999999 999999987755
Q ss_pred eEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEE-ecCceEEEEECCc--EEEEEecc
Q psy505 88 QIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYS-FSNTILAVKLNRK--KEEEEDEE 156 (161)
Q Consensus 88 ~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~-~~~~V~~v~~~~~--~~vv~~~~ 156 (161)
..+.+|.. .+.+++|+|++..+++++.|++|+|||+++++++..+. |.+.|++++|+|+ .++.+..+
T Consensus 242 ~~~~~h~~--~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d 311 (321)
T 3ow8_A 242 GTLSGHAS--WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDD 311 (321)
T ss_dssp EEECCCSS--CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEcCCCC--ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCC
Confidence 56677865 47789999999889999899999999999999998885 6889999999997 56666665
No 3
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.93 E-value=7e-25 Score=176.00 Aligned_cols=141 Identities=11% Similarity=0.052 Sum_probs=114.3
Q ss_pred CCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee-------eEEEecCCc-eEEEEeCCcC
Q psy505 13 NPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA-------SLSVGTKSG-YRLFSLNSID 84 (161)
Q Consensus 13 ~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~-------~lasgs~dg-iriwd~~~~~ 84 (161)
|...|.+++|+|||.+|++++. ||+|+|||+++++++.++.+|.++|++++ +|++|+.|| |||||+++++
T Consensus 126 H~~~V~~v~~spdg~~l~sgs~--d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~ 203 (344)
T 4gqb_B 126 HDDIVSTVSVLSSGTQAVSGSK--DICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK 203 (344)
T ss_dssp CSSCEEEEEECTTSSEEEEEET--TSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS
T ss_pred CCCCEEEEEECCCCCEEEEEeC--CCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccc
Confidence 4556999999999999999776 99999999999999999999999999998 789999999 9999999988
Q ss_pred ceeeEEeecCcceEEEEEeecC-CeEEEEecCCCCeEEEEecCCCCeEEEEE-ecCceEEEEECCcE---EEEEecc
Q psy505 85 TLEQIYENSQEDVCIVERLFSS-SLVAVVSLSSPRKLTVCHFKRGSEICNYS-FSNTILAVKLNRKK---EEEEDEE 156 (161)
Q Consensus 85 ~~~~~~~~~~~~~~v~~~~fs~-~~~~~~s~~~d~~i~iWD~~~~~~i~~l~-~~~~V~~v~~~~~~---~vv~~~~ 156 (161)
+...+ ..+.+...+.+++|+| +...+++++.|++|+|||+++++++.++. |.+.|.+++|+|++ ++.+..|
T Consensus 204 ~~~~~-~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D 279 (344)
T 4gqb_B 204 PASQI-GCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSED 279 (344)
T ss_dssp CEEEC-C----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETT
T ss_pred eeeee-ecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCC
Confidence 76433 2222233477889998 44567777789999999999999999987 67899999999973 4545444
No 4
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.92 E-value=1.5e-23 Score=164.26 Aligned_cols=149 Identities=11% Similarity=0.149 Sum_probs=119.2
Q ss_pred ceEEecCCCCCCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCC-ceeeeeccCccceeee-------eEEEecCCc
Q psy505 3 VLHTIRDTPPNPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLH-AKTMIPAHDSPLAALA-------SLSVGTKSG 74 (161)
Q Consensus 3 ~~~~~~~~~~~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~-~~~~l~~H~~~V~~l~-------~lasgs~dg 74 (161)
++.++ .. ++..|.+++++|++.++++++. ||+|++||++++. +...+.+|..+|.+++ +||+|+.||
T Consensus 89 ~~~~~-~~--h~~~v~~~~~~~~~~~l~sgs~--D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~ 163 (304)
T 2ynn_A 89 KVVDF-EA--HPDYIRSIAVHPTKPYVLSGSD--DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163 (304)
T ss_dssp EEEEE-EC--CSSCEEEEEECSSSSEEEEEET--TSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTS
T ss_pred EEEEE-eC--CCCcEEEEEEcCCCCEEEEECC--CCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCC
Confidence 44555 33 4456899999999999998776 9999999999874 5578999999999998 799999999
Q ss_pred -eEEEEeCCcCceeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEE-ecCceEEEEECCcE--E
Q psy505 75 -YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYS-FSNTILAVKLNRKK--E 150 (161)
Q Consensus 75 -iriwd~~~~~~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~-~~~~V~~v~~~~~~--~ 150 (161)
||+||++++.+...+..+|...+....+...|++..+++++.|++|+|||+++++++..+. |...|.+++|+|+. +
T Consensus 164 ~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l 243 (304)
T 2ynn_A 164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPII 243 (304)
T ss_dssp EEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEE
T ss_pred eEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEE
Confidence 9999998877654555555555444444444577778888899999999999999999987 67899999999984 6
Q ss_pred EEEecc
Q psy505 151 EEEDEE 156 (161)
Q Consensus 151 vv~~~~ 156 (161)
+....|
T Consensus 244 ~s~s~D 249 (304)
T 2ynn_A 244 ISGSED 249 (304)
T ss_dssp EEEETT
T ss_pred EEEcCC
Confidence 665555
No 5
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.92 E-value=1.7e-23 Score=166.22 Aligned_cols=148 Identities=14% Similarity=0.173 Sum_probs=122.6
Q ss_pred ceEEecCCCCCCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee------eEEEecCCc-e
Q psy505 3 VLHTIRDTPPNPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA------SLSVGTKSG-Y 75 (161)
Q Consensus 3 ~~~~~~~~~~~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~------~lasgs~dg-i 75 (161)
++.++ .. +...|.+++++|++.++++++. ||+|++||+++++++.++.+|..+|++++ +|++|+.|| |
T Consensus 176 ~~~~~-~~--h~~~v~~~~~~~~~~~l~sg~~--d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v 250 (340)
T 1got_B 176 QTTTF-TG--HTGDVMSLSLAPDTRLFVSGAC--DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250 (340)
T ss_dssp EEEEE-CC--CSSCEEEEEECTTSSEEEEEET--TSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEEEE-cC--CCCceEEEEECCCCCEEEEEeC--CCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcE
Confidence 34555 33 4456899999999999998776 99999999999999999999999999998 899999999 9
Q ss_pred EEEEeCCcCceeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEE-ecCceEEEEECCc--EEEE
Q psy505 76 RLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYS-FSNTILAVKLNRK--KEEE 152 (161)
Q Consensus 76 riwd~~~~~~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~-~~~~V~~v~~~~~--~~vv 152 (161)
++||+++++.+. .+..+.....+.+++|+|++..+++++.|+.|+|||..+++++..+. |.+.|.+++|+|+ .++.
T Consensus 251 ~iwd~~~~~~~~-~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s 329 (340)
T 1got_B 251 RLFDLRADQELM-TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVAT 329 (340)
T ss_dssp EEEETTTTEEEE-EECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEE
T ss_pred EEEECCCCcEEE-EEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEE
Confidence 999998876542 33322222247889999999999999999999999999999998886 6889999999998 4666
Q ss_pred Eecc
Q psy505 153 EDEE 156 (161)
Q Consensus 153 ~~~~ 156 (161)
...|
T Consensus 330 ~s~D 333 (340)
T 1got_B 330 GSWD 333 (340)
T ss_dssp EETT
T ss_pred EcCC
Confidence 5555
No 6
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.92 E-value=9.1e-24 Score=172.19 Aligned_cols=139 Identities=7% Similarity=0.151 Sum_probs=121.2
Q ss_pred CCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee------eEEEecCCc-eEEEEeCCcCc
Q psy505 13 NPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA------SLSVGTKSG-YRLFSLNSIDT 85 (161)
Q Consensus 13 ~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~------~lasgs~dg-iriwd~~~~~~ 85 (161)
|...|.+++++|++.++++++. ||+|+|||+.+++.+.++.+|.++|.+++ +|++|+.|| |+|||++++++
T Consensus 107 h~~~V~~~~~~p~~~~l~s~s~--Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~ 184 (410)
T 1vyh_C 107 HRSPVTRVIFHPVFSVMVSASE--DATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFEC 184 (410)
T ss_dssp CSSCEEEEEECSSSSEEEEEES--SSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCE
T ss_pred cCCcEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Confidence 4456999999999999999776 99999999999999999999999999998 899999999 99999998776
Q ss_pred eeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEE-ecCceEEEEECCc--EEEEEecc
Q psy505 86 LEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYS-FSNTILAVKLNRK--KEEEEDEE 156 (161)
Q Consensus 86 ~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~-~~~~V~~v~~~~~--~~vv~~~~ 156 (161)
+ ..+.+|... |.+++|+|++..+++++.|++|++||+++++++..+. |...|.++.|+|+ .++.+..+
T Consensus 185 ~-~~~~~h~~~--V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D 255 (410)
T 1vyh_C 185 I-RTMHGHDHN--VSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSND 255 (410)
T ss_dssp E-ECCCCCSSC--EEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred e-EEEcCCCCC--EEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCC
Confidence 5 456777654 7788999998888888899999999999999998887 6789999999997 45555544
No 7
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.91 E-value=1.8e-23 Score=167.47 Aligned_cols=151 Identities=13% Similarity=0.128 Sum_probs=120.6
Q ss_pred cceEEecCCCCCCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee------eEEEecCCc-
Q psy505 2 KVLHTIRDTPPNPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA------SLSVGTKSG- 74 (161)
Q Consensus 2 ~~~~~~~~~~~~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~------~lasgs~dg- 74 (161)
++++++ ..+..+....+++++++|.++++++. ||+|++||+++++++..+.+|..+|++++ +|++|+.|+
T Consensus 187 ~~~~~~-~~h~~~v~~~~~~~~~~g~~l~sgs~--Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~ 263 (354)
T 2pbi_B 187 QLLQSF-HGHGADVLCLDLAPSETGNTFVSGGC--DKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDAT 263 (354)
T ss_dssp CEEEEE-ECCSSCEEEEEECCCSSCCEEEEEET--TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred eEEEEE-cCCCCCeEEEEEEeCCCCCEEEEEeC--CCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCe
Confidence 355666 45554433344455557889998776 99999999999999999999999999998 899999999
Q ss_pred eEEEEeCCcCceeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEE-ecCceEEEEECCc--EEE
Q psy505 75 YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYS-FSNTILAVKLNRK--KEE 151 (161)
Q Consensus 75 iriwd~~~~~~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~-~~~~V~~v~~~~~--~~v 151 (161)
||+||+++++.+ ..+..+.....+.+++|+|++..+++++.|++|+|||+.+++++..+. |.+.|.+++|+|+ .++
T Consensus 264 v~lwd~~~~~~~-~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~ 342 (354)
T 2pbi_B 264 CRLYDLRADREV-AIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFC 342 (354)
T ss_dssp EEEEETTTTEEE-EEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred EEEEECCCCcEE-EEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEE
Confidence 999999887544 344444322346788999999989998899999999999999988875 7899999999998 455
Q ss_pred EEecc
Q psy505 152 EEDEE 156 (161)
Q Consensus 152 v~~~~ 156 (161)
....|
T Consensus 343 sgs~D 347 (354)
T 2pbi_B 343 SGSWD 347 (354)
T ss_dssp EEETT
T ss_pred EEcCC
Confidence 55554
No 8
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.91 E-value=1.3e-22 Score=158.20 Aligned_cols=146 Identities=15% Similarity=0.192 Sum_probs=123.8
Q ss_pred ceEEecCCCCCCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee------eEEEecCCc-e
Q psy505 3 VLHTIRDTPPNPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA------SLSVGTKSG-Y 75 (161)
Q Consensus 3 ~~~~~~~~~~~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~------~lasgs~dg-i 75 (161)
+..++ .. |...|.+++++|+|.++++++. ||.|++||+.+++....+.+|..+|.+++ +|++|+.|| |
T Consensus 15 ~~~~~-~g--h~~~v~~~~~s~~~~~l~s~~~--dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i 89 (312)
T 4ery_A 15 LKFTL-AG--HTKAVSSVKFSPNGEWLASSSA--DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTL 89 (312)
T ss_dssp EEEEE-CC--CSSCEEEEEECTTSSEEEEEET--TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred eEEEE-cc--cCCcEEEEEECCCCCEEEEeeC--CCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEE
Confidence 34555 33 4456999999999999999776 99999999999999999999999999998 899999999 9
Q ss_pred EEEEeCCcCceeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEE-ecCceEEEEECCc--EEEE
Q psy505 76 RLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYS-FSNTILAVKLNRK--KEEE 152 (161)
Q Consensus 76 riwd~~~~~~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~-~~~~V~~v~~~~~--~~vv 152 (161)
++||+++++++ ..+.+|... +.++.|+|++..+++++.|++|++||+++++++..+. +..+|.++.|+|+ .+++
T Consensus 90 ~vwd~~~~~~~-~~~~~~~~~--v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 166 (312)
T 4ery_A 90 KIWDVSSGKCL-KTLKGHSNY--VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 166 (312)
T ss_dssp EEEETTTCCEE-EEEECCSSC--EEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred EEEECCCCcEE-EEEcCCCCC--EEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEE
Confidence 99999998765 466777653 6788899988888888889999999999999988886 5789999999987 4555
Q ss_pred Eecc
Q psy505 153 EDEE 156 (161)
Q Consensus 153 ~~~~ 156 (161)
...+
T Consensus 167 ~~~d 170 (312)
T 4ery_A 167 SSYD 170 (312)
T ss_dssp EETT
T ss_pred EeCC
Confidence 5444
No 9
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.91 E-value=1e-22 Score=160.66 Aligned_cols=146 Identities=5% Similarity=0.090 Sum_probs=121.7
Q ss_pred ceEEecCCCCCCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee------------eEEEe
Q psy505 3 VLHTIRDTPPNPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA------------SLSVG 70 (161)
Q Consensus 3 ~~~~~~~~~~~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~------------~lasg 70 (161)
++.++ .. +...|.+++++|++.++++++. ||+|++||++ ++++..+.+|.+.|.++. +|++|
T Consensus 99 ~~~~~-~~--h~~~v~~~~~~~~~~~l~s~s~--D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~ 172 (319)
T 3frx_A 99 TYQRF-VG--HKSDVMSVDIDKKASMIISGSR--DKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISA 172 (319)
T ss_dssp EEEEE-EC--CSSCEEEEEECTTSCEEEEEET--TSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEE
T ss_pred eeEEE-cc--CCCcEEEEEEcCCCCEEEEEeC--CCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEE
Confidence 34455 33 4456899999999999998776 9999999997 578889999999999887 58999
Q ss_pred cCCc-eEEEEeCCcCceeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEEecCceEEEEECCc-
Q psy505 71 TKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYSFSNTILAVKLNRK- 148 (161)
Q Consensus 71 s~dg-iriwd~~~~~~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~~~~V~~v~~~~~- 148 (161)
+.|+ |++||+++++.. ..+.+|... +.+++|+|++..+++++.|++|+|||+++++++..+..++.|.+++|+|+
T Consensus 173 ~~d~~i~~wd~~~~~~~-~~~~~h~~~--v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~ 249 (319)
T 3frx_A 173 GNDKMVKAWNLNQFQIE-ADFIGHNSN--INTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNR 249 (319)
T ss_dssp ETTSCEEEEETTTTEEE-EEECCCCSC--EEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSS
T ss_pred eCCCEEEEEECCcchhh-eeecCCCCc--EEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCC
Confidence 9999 999999887644 456677654 77889999999999999999999999999999999988899999999998
Q ss_pred -EEEEEeccc
Q psy505 149 -KEEEEDEEE 157 (161)
Q Consensus 149 -~~vv~~~~~ 157 (161)
.++....+.
T Consensus 250 ~~la~~~~~~ 259 (319)
T 3frx_A 250 YWLAAATATG 259 (319)
T ss_dssp SEEEEEETTE
T ss_pred CEEEEEcCCC
Confidence 455554443
No 10
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.91 E-value=6.8e-23 Score=162.31 Aligned_cols=149 Identities=9% Similarity=0.181 Sum_probs=113.3
Q ss_pred ceEEecCCCCCCceeEEeecCCCceEEEEcCCCCcceEEEEEcCC-------CCceeeeeccCccceeee------eEEE
Q psy505 3 VLHTIRDTPPNPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADN-------LHAKTMIPAHDSPLAALA------SLSV 69 (161)
Q Consensus 3 ~~~~~~~~~~~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~-------~~~~~~l~~H~~~V~~l~------~las 69 (161)
++.++ ....+...|.+++++|++.+||+++. ||+|+|||+.+ .+++..+.+|.++|.+++ +||+
T Consensus 48 ~~~~~-~~~~h~~~v~~v~~sp~~~~las~s~--D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las 124 (330)
T 2hes_X 48 LIDVL-DETAHKKAIRSVAWRPHTSLLAAGSF--DSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLAT 124 (330)
T ss_dssp EEEEE-CTTCCCSCEEEEEECTTSSEEEEEET--TSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEE
T ss_pred EEEEE-ecCCccCCEEEEEECCCCCEEEEEeC--CCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEE
Confidence 34445 23336667999999999999999776 99999999853 346778999999999998 8999
Q ss_pred ecCCc-eEEEEeCCc-Cc--eeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCC--CeEEEEE-ecCceEE
Q psy505 70 GTKSG-YRLFSLNSI-DT--LEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRG--SEICNYS-FSNTILA 142 (161)
Q Consensus 70 gs~dg-iriwd~~~~-~~--~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~--~~i~~l~-~~~~V~~ 142 (161)
|+.|+ |+|||+++. +. ....+.+|.. .|.+++|+|++..+++++.|++|+|||..++ +++..+. |.+.|++
T Consensus 125 ~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~--~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~ 202 (330)
T 2hes_X 125 CSRDKSVWIWETDESGEEYECISVLQEHSQ--DVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWS 202 (330)
T ss_dssp EETTSCEEEEECCTTCCCCEEEEEECCCSS--CEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEE
T ss_pred EeCCCEEEEEeccCCCCCeEEEEEeccCCC--ceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEE
Confidence 99999 999999532 21 2245567765 4778899999988999989999999999877 5677775 6789999
Q ss_pred EEECCc----EEEEEecc
Q psy505 143 VKLNRK----KEEEEDEE 156 (161)
Q Consensus 143 v~~~~~----~~vv~~~~ 156 (161)
++|+|+ .++....|
T Consensus 203 ~~~~~~~~~~~l~s~s~D 220 (330)
T 2hes_X 203 SDFDKTEGVFRLCSGSDD 220 (330)
T ss_dssp EEECCSSSSCEEEEEETT
T ss_pred EEecCCCCeeEEEEEeCC
Confidence 999997 45555554
No 11
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.91 E-value=1.2e-22 Score=162.59 Aligned_cols=150 Identities=17% Similarity=0.234 Sum_probs=117.1
Q ss_pred CcceEEecCCCCCCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceee---------------------------
Q psy505 1 MKVLHTIRDTPPNPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTM--------------------------- 53 (161)
Q Consensus 1 ~~~~~~~~~~~~~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~--------------------------- 53 (161)
|++..++ ..|. ..|.+++++||+.+||+++. ||+|+|||..+++..+.
T Consensus 54 ~~~~~~l-~gH~--~~V~~~~~s~d~~~l~s~s~--Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~ 128 (354)
T 2pbi_B 54 MKTRRTL-KGHG--NKVLCMDWCKDKRRIVSSSQ--DGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDN 128 (354)
T ss_dssp CCEEEEE-ECCS--SCEEEEEECTTSSEEEEEET--TSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTS
T ss_pred cEEEEEe-cCCC--CeEEEEEECCCCCEEEEEeC--CCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCC
Confidence 3456667 4544 45899999999999999776 99999999887765433
Q ss_pred ---------------------eeccCccceeee------eEEEecCCc-eEEEEeCCcCceeeEEeecCcceEEEEEeec
Q psy505 54 ---------------------IPAHDSPLAALA------SLSVGTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFS 105 (161)
Q Consensus 54 ---------------------l~~H~~~V~~l~------~lasgs~dg-iriwd~~~~~~~~~~~~~~~~~~~v~~~~fs 105 (161)
+.+|.+.|.+++ .|++|+.|| |++||+++++++ ..+.+|...+....++++
T Consensus 129 ~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~-~~~~~h~~~v~~~~~~~~ 207 (354)
T 2pbi_B 129 KCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLL-QSFHGHGADVLCLDLAPS 207 (354)
T ss_dssp EEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEE-EEEECCSSCEEEEEECCC
T ss_pred CEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEE-EEEcCCCCCeEEEEEEeC
Confidence 445777777777 789999999 999999998766 567788766554454445
Q ss_pred CCeEEEEecCCCCeEEEEecCCCCeEEEEE-ecCceEEEEECCc--EEEEEecc
Q psy505 106 SSLVAVVSLSSPRKLTVCHFKRGSEICNYS-FSNTILAVKLNRK--KEEEEDEE 156 (161)
Q Consensus 106 ~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~-~~~~V~~v~~~~~--~~vv~~~~ 156 (161)
+++..+++++.|++|++||+++++++..+. |.+.|.+++|+|+ .++.+..+
T Consensus 208 ~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D 261 (354)
T 2pbi_B 208 ETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDD 261 (354)
T ss_dssp SSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCC
Confidence 566677888889999999999999998886 6789999999987 56666554
No 12
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.91 E-value=2.2e-23 Score=167.20 Aligned_cols=139 Identities=14% Similarity=0.122 Sum_probs=110.7
Q ss_pred cceEEecCCCCCCceeEEeecCCCce-EEEEcCCCCcceEEEEEcCCCCceeeee--ccCccceeee-------eEEEec
Q psy505 2 KVLHTIRDTPPNPNGICCLCVNSDNC-YLAYPGSNSIGEVQIFDADNLHAKTMIP--AHDSPLAALA-------SLSVGT 71 (161)
Q Consensus 2 ~~~~~~~~~~~~~~~v~~~~~~~d~~-~la~~g~~~dg~v~iWd~~~~~~~~~l~--~H~~~V~~l~-------~lasgs 71 (161)
++++++ ..| ...|.+++++|++. ++++++. ||+|+|||++++++...+. .|...+.+++ +|++|+
T Consensus 160 ~~~~~~-~~h--~~~V~~~~~~~~~~~~l~s~s~--D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~ 234 (344)
T 4gqb_B 160 VVLSSY-RAH--AAQVTCVAASPHKDSVFLSCSE--DNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGD 234 (344)
T ss_dssp EEEEEE-CCC--SSCEEEEEECSSCTTEEEEEET--TSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEE
T ss_pred cEEEEE-cCc--CCceEEEEecCCCCCceeeecc--ccccccccccccceeeeeecceeeccceeeeecCCCCcceEEec
Confidence 456677 444 44588999999875 5666554 9999999999999988874 5666788887 789999
Q ss_pred CCc-eEEEEeCCcCceeeEEeecCcceEEEEEeecCCe-EEEEecCCCCeEEEEecCCCCeEEEEEecCceEEEEECCc
Q psy505 72 KSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSL-VAVVSLSSPRKLTVCHFKRGSEICNYSFSNTILAVKLNRK 148 (161)
Q Consensus 72 ~dg-iriwd~~~~~~~~~~~~~~~~~~~v~~~~fs~~~-~~~~s~~~d~~i~iWD~~~~~~i~~l~~~~~V~~v~~~~~ 148 (161)
.|| |+|||+++++++ ..+.+|... |.+++|+|++ ..+++++.|++|+|||.++++++....|.+.|.+++|+|+
T Consensus 235 ~dg~v~~wd~~~~~~~-~~~~~h~~~--v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~ 310 (344)
T 4gqb_B 235 ENGTVSLVDTKSTSCV-LSSAVHSQC--VTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPL 310 (344)
T ss_dssp TTSEEEEEESCC--CC-EEEECCSSC--EEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSS
T ss_pred cCCcEEEEECCCCcEE-EEEcCCCCC--EEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCC
Confidence 999 999999998876 466788754 7788999987 4678888999999999999987765568899999999997
No 13
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.90 E-value=7.3e-23 Score=166.83 Aligned_cols=138 Identities=7% Similarity=0.120 Sum_probs=120.4
Q ss_pred ceEEecCCCCCCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee------eEEEecCCc-e
Q psy505 3 VLHTIRDTPPNPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA------SLSVGTKSG-Y 75 (161)
Q Consensus 3 ~~~~~~~~~~~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~------~lasgs~dg-i 75 (161)
+++++ .. +...|.+++++|+|.++++++. ||+|+|||+.+++++.++.+|.++|.+++ +|++|+.|+ |
T Consensus 142 ~~~~l-~~--h~~~V~~v~~~~~~~~l~sgs~--D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i 216 (410)
T 1vyh_C 142 FERTL-KG--HTDSVQDISFDHSGKLLASCSA--DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTI 216 (410)
T ss_dssp CCEEE-CC--CSSCEEEEEECTTSSEEEEEET--TSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred EEEEE-ec--cCCcEEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeE
Confidence 45566 34 3456899999999999999776 99999999999999999999999999998 899999999 9
Q ss_pred EEEEeCCcCceeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEE-ecCceEEEEECCc
Q psy505 76 RLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYS-FSNTILAVKLNRK 148 (161)
Q Consensus 76 riwd~~~~~~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~-~~~~V~~v~~~~~ 148 (161)
++||++++.++ ..+.+|... +..+.|+|++..+++++.|++|++||++++++...+. |...|.++.|+|+
T Consensus 217 ~~wd~~~~~~~-~~~~~h~~~--v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~ 287 (410)
T 1vyh_C 217 KMWEVQTGYCV-KTFTGHREW--VRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPE 287 (410)
T ss_dssp EEEETTTCCEE-EEEECCSSC--EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCS
T ss_pred EEEECCCCcEE-EEEeCCCcc--EEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCc
Confidence 99999998866 566788754 6778899999889998899999999999999988885 6789999999985
No 14
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.90 E-value=4.5e-23 Score=165.47 Aligned_cols=139 Identities=17% Similarity=0.152 Sum_probs=108.7
Q ss_pred CCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee---------------------------
Q psy505 13 NPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA--------------------------- 65 (161)
Q Consensus 13 ~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~--------------------------- 65 (161)
+...|.+++++|||.+|++++. ||+|++||+++++++..+++|.++|++++
T Consensus 138 h~~~V~~v~~spdg~~l~sgs~--dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~ 215 (357)
T 4g56_B 138 HDDIVKTLSVFSDGTQAVSGGK--DFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPK 215 (357)
T ss_dssp CSSCEEEEEECSSSSEEEEEET--TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSS
T ss_pred CCCCEEEEEECCCCCEEEEEeC--CCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCc
Confidence 4556999999999999998776 99999999999999999999999998876
Q ss_pred -------------------------eEEEecCCc-eEEEEeCCcCceeeEEeecCcceEEEEEeecCCe-EEEEecCCCC
Q psy505 66 -------------------------SLSVGTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSL-VAVVSLSSPR 118 (161)
Q Consensus 66 -------------------------~lasgs~dg-iriwd~~~~~~~~~~~~~~~~~~~v~~~~fs~~~-~~~~s~~~d~ 118 (161)
+||+|+.|+ |++||+++++++ ..+.+|.. .|.+++|+|++ ..+++++.|+
T Consensus 216 ~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~-~~~~~~~~--~v~~l~~sp~~~~~lasgs~D~ 292 (357)
T 4g56_B 216 PATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSA-QTSAVHSQ--NITGLAYSYHSSPFLASISEDC 292 (357)
T ss_dssp CBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGC-EEECCCSS--CEEEEEECSSSSCCEEEEETTS
T ss_pred eeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEe-EEEeccce--eEEEEEEcCCCCCEEEEEeCCC
Confidence 344445555 555555444433 23344443 46788999876 5677888899
Q ss_pred eEEEEecCCCCeEEEEEecCceEEEEECC-c--EEEEEecc
Q psy505 119 KLTVCHFKRGSEICNYSFSNTILAVKLNR-K--KEEEEDEE 156 (161)
Q Consensus 119 ~i~iWD~~~~~~i~~l~~~~~V~~v~~~~-~--~~vv~~~~ 156 (161)
+|+|||+++++++..+.|.+.|.+|+|+| + .++.+..|
T Consensus 293 ~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~D 333 (357)
T 4g56_B 293 TVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWD 333 (357)
T ss_dssp CEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETT
T ss_pred EEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCC
Confidence 99999999999988888999999999998 3 56666554
No 15
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.90 E-value=2.1e-22 Score=159.48 Aligned_cols=137 Identities=18% Similarity=0.234 Sum_probs=119.4
Q ss_pred ceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee------eEEEecCCc-eEEEEeCCcCcee
Q psy505 15 NGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA------SLSVGTKSG-YRLFSLNSIDTLE 87 (161)
Q Consensus 15 ~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~------~lasgs~dg-iriwd~~~~~~~~ 87 (161)
..+.+++++||+.++++++. ||.|++||+++++....+..|...|.+++ +||+|+.|| |++||+++++.+
T Consensus 123 ~~~~~~~~spdg~~l~~g~~--dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~- 199 (321)
T 3ow8_A 123 VDAWTLAFSPDSQYLATGTH--VGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLL- 199 (321)
T ss_dssp TCCCCEEECTTSSEEEEECT--TSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-
T ss_pred ccEEEEEECCCCCEEEEEcC--CCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE-
Confidence 34667888999999999776 99999999999999999999999999998 899999999 999999998765
Q ss_pred eEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEE-ecCceEEEEECCc--EEEEEecc
Q psy505 88 QIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYS-FSNTILAVKLNRK--KEEEEDEE 156 (161)
Q Consensus 88 ~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~-~~~~V~~v~~~~~--~~vv~~~~ 156 (161)
..+.+|..+ +.+++|+|++..+++++.|++|+|||+++++++..+. |.+.|.+++|+|+ .++....+
T Consensus 200 ~~~~~h~~~--v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D 269 (321)
T 3ow8_A 200 HTLEGHAMP--IRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSD 269 (321)
T ss_dssp EEECCCSSC--CCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEcccCCc--eeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCC
Confidence 456777654 6788999999999999999999999999999988886 6789999999997 56655554
No 16
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.90 E-value=4.5e-22 Score=156.91 Aligned_cols=144 Identities=7% Similarity=0.140 Sum_probs=117.4
Q ss_pred eEEecCCCCCCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee------eEEEecCCc-eE
Q psy505 4 LHTIRDTPPNPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA------SLSVGTKSG-YR 76 (161)
Q Consensus 4 ~~~~~~~~~~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~------~lasgs~dg-ir 76 (161)
+.++ .. |...|.+++++|||.++++++. ||+|+|||+.+++++..+.+|.++|.+++ +|++|+.|+ ||
T Consensus 58 ~~~~-~~--h~~~v~~~~~s~dg~~l~s~s~--D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~ 132 (319)
T 3frx_A 58 VRSF-KG--HSHIVQDCTLTADGAYALSASW--DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132 (319)
T ss_dssp EEEE-EC--CSSCEEEEEECTTSSEEEEEET--TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEE
T ss_pred ceEE-eC--CcccEEEEEECCCCCEEEEEeC--CCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 4445 33 3445888899999999999776 99999999999999999999999999998 899999999 99
Q ss_pred EEEeCCcCceeeEEeecCcceEEEEEeecCCe------EEEEecCCCCeEEEEecCCCCeEEEEE-ecCceEEEEECCc-
Q psy505 77 LFSLNSIDTLEQIYENSQEDVCIVERLFSSSL------VAVVSLSSPRKLTVCHFKRGSEICNYS-FSNTILAVKLNRK- 148 (161)
Q Consensus 77 iwd~~~~~~~~~~~~~~~~~~~v~~~~fs~~~------~~~~s~~~d~~i~iWD~~~~~~i~~l~-~~~~V~~v~~~~~- 148 (161)
+||++. +++ ..+.+|... +.++.|+|+. ..+++++.|++|++||++++++...+. |.+.|.+++|+|+
T Consensus 133 vwd~~~-~~~-~~~~~h~~~--v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g 208 (319)
T 3frx_A 133 VWTIKG-QCL-ATLLGHNDW--VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG 208 (319)
T ss_dssp EEETTS-CEE-EEECCCSSC--EEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTS
T ss_pred EEECCC-CeE-EEEeccCCc--EEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCC
Confidence 999964 444 455677654 6677888753 367788889999999999999888775 6889999999998
Q ss_pred -EEEEEecc
Q psy505 149 -KEEEEDEE 156 (161)
Q Consensus 149 -~~vv~~~~ 156 (161)
.++....+
T Consensus 209 ~~l~s~~~d 217 (319)
T 3frx_A 209 TLIASAGKD 217 (319)
T ss_dssp SEEEEEETT
T ss_pred CEEEEEeCC
Confidence 45555554
No 17
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.90 E-value=3.3e-22 Score=156.05 Aligned_cols=133 Identities=11% Similarity=0.079 Sum_probs=107.3
Q ss_pred CCCceeEEeecCCCceEEEEcCCCCcceEEEEEcCC--CCceeeeeccCccceeee--------eEEEecCCc-eEEEEe
Q psy505 12 PNPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADN--LHAKTMIPAHDSPLAALA--------SLSVGTKSG-YRLFSL 80 (161)
Q Consensus 12 ~~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~--~~~~~~l~~H~~~V~~l~--------~lasgs~dg-iriwd~ 80 (161)
.|...|.+++|+|||.+||+++. ||+|+|||+.+ ++++.+|.+|.++|++++ +||+|+.|| |||||+
T Consensus 7 ~h~~~V~~~~~s~~g~~las~s~--D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~ 84 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKRMATCSS--DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKE 84 (297)
T ss_dssp SCSSCEEEEEECTTSSEEEEEET--TSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEB
T ss_pred CCcCceEEEEECCCCCEEEEEeC--CCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEc
Confidence 35557999999999999999776 99999999975 367899999999999986 799999999 999999
Q ss_pred CCcCc-eeeEEeecCcceEEEEEeecCC--eEEEEecCCCCeEEEEecCCCCe--EEEEE-ecCceEEEEECCc
Q psy505 81 NSIDT-LEQIYENSQEDVCIVERLFSSS--LVAVVSLSSPRKLTVCHFKRGSE--ICNYS-FSNTILAVKLNRK 148 (161)
Q Consensus 81 ~~~~~-~~~~~~~~~~~~~v~~~~fs~~--~~~~~s~~~d~~i~iWD~~~~~~--i~~l~-~~~~V~~v~~~~~ 148 (161)
++++. ....+.+|.. .+.+++|+|+ +..+++++.|++|++||++++.. ...+. |...|.+++|+|+
T Consensus 85 ~~~~~~~~~~~~~h~~--~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~ 156 (297)
T 2pm7_B 85 ENGRWSQIAVHAVHSA--SVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 156 (297)
T ss_dssp SSSCBCCCEEECCCSS--CEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCC
T ss_pred CCCceEEEEEeecCCC--ceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCC
Confidence 88742 1134556764 4778889986 66677777899999999987642 23333 6789999999996
No 18
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.89 E-value=2.8e-22 Score=159.65 Aligned_cols=149 Identities=13% Similarity=0.138 Sum_probs=117.7
Q ss_pred cceEEecCCCCCCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCce--ee-eeccCccceeee------eEEEecC
Q psy505 2 KVLHTIRDTPPNPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAK--TM-IPAHDSPLAALA------SLSVGTK 72 (161)
Q Consensus 2 ~~~~~~~~~~~~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~--~~-l~~H~~~V~~l~------~lasgs~ 72 (161)
++++++ ..|+. ..+.+++++|||.+||+++. ||+|+|||+.+++.. .. ..+|..+|++++ +||+|+.
T Consensus 6 ~~~~~~-~~h~~-~~v~~l~~sp~g~~las~~~--D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~ 81 (345)
T 3fm0_A 6 VLLGRV-PAHPD-SRCWFLAWNPAGTLLASCGG--DRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81 (345)
T ss_dssp EEEEEE-CCSTT-SCEEEEEECTTSSCEEEEET--TSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEET
T ss_pred EEeeee-cCCCC-CcEEEEEECCCCCEEEEEcC--CCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEEC
Confidence 678888 55443 25889999999999999876 999999999987633 22 368999999999 8999999
Q ss_pred Cc-eEEEEeCCcCc-eeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCe---EEEEE-ecCceEEEEEC
Q psy505 73 SG-YRLFSLNSIDT-LEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSE---ICNYS-FSNTILAVKLN 146 (161)
Q Consensus 73 dg-iriwd~~~~~~-~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~---i~~l~-~~~~V~~v~~~ 146 (161)
|+ ++|||..+++. ....+.+|... |.+++|+|++..+++++.|++|+|||+.+++. +..+. |...|.+++|+
T Consensus 82 D~~v~iw~~~~~~~~~~~~~~~h~~~--v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~ 159 (345)
T 3fm0_A 82 DATTCIWKKNQDDFECVTTLEGHENE--VKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWH 159 (345)
T ss_dssp TSCEEEEEECCC-EEEEEEECCCSSC--EEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEEC
T ss_pred CCcEEEEEccCCCeEEEEEccCCCCC--ceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEEC
Confidence 99 99999987642 22456778654 77889999998899998999999999988753 34443 56889999999
Q ss_pred Cc--EEEEEecc
Q psy505 147 RK--KEEEEDEE 156 (161)
Q Consensus 147 ~~--~~vv~~~~ 156 (161)
|+ .++....+
T Consensus 160 p~~~~l~s~s~d 171 (345)
T 3fm0_A 160 PSQELLASASYD 171 (345)
T ss_dssp SSSSCEEEEETT
T ss_pred CCCCEEEEEeCC
Confidence 97 45555544
No 19
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.89 E-value=1.7e-21 Score=154.70 Aligned_cols=147 Identities=12% Similarity=0.172 Sum_probs=119.3
Q ss_pred cceEEecCCCCCCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee------eEEEecCCc-
Q psy505 2 KVLHTIRDTPPNPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA------SLSVGTKSG- 74 (161)
Q Consensus 2 ~~~~~~~~~~~~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~------~lasgs~dg- 74 (161)
+..+++ ..| ...|.+++++||+.++++++. ||+|+|||+.+++.+..+..|...|.+++ +|++|+.|+
T Consensus 46 ~~~~~l-~gH--~~~v~~~~~s~d~~~l~s~s~--Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~ 120 (340)
T 1got_B 46 RTRRTL-RGH--LAKIYAMHWGTDSRLLLSASQ--DGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120 (340)
T ss_dssp CEEEEE-CCC--SSCEEEEEECTTSSEEEEEET--TTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCE
T ss_pred hhheee-cCC--CCceEEEEECCCCCEEEEEeC--CCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCe
Confidence 455666 444 446999999999999999776 99999999999999999999999999998 899999999
Q ss_pred eEEEEeCCcCc---eeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEE-ecCceEEEEECCc--
Q psy505 75 YRLFSLNSIDT---LEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYS-FSNTILAVKLNRK-- 148 (161)
Q Consensus 75 iriwd~~~~~~---~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~-~~~~V~~v~~~~~-- 148 (161)
+++||+.+++. +...+.+|.+. +.++.|++++. +++++.|++|++||+++++++..+. |.+.|.+++|+|+
T Consensus 121 v~iw~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 197 (340)
T 1got_B 121 CSIYNLKTREGNVRVSRELAGHTGY--LSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR 197 (340)
T ss_dssp EEEEETTTCSBSCEEEEEEECCSSC--EEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS
T ss_pred EEEEECccCCCcceeEEEecCCCcc--EEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCC
Confidence 99999987542 23445677654 66778888776 5566678999999999999998886 6789999999998
Q ss_pred EEEEEecc
Q psy505 149 KEEEEDEE 156 (161)
Q Consensus 149 ~~vv~~~~ 156 (161)
.++....+
T Consensus 198 ~l~sg~~d 205 (340)
T 1got_B 198 LFVSGACD 205 (340)
T ss_dssp EEEEEETT
T ss_pred EEEEEeCC
Confidence 34444433
No 20
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.89 E-value=1.8e-21 Score=151.60 Aligned_cols=139 Identities=13% Similarity=0.111 Sum_probs=118.5
Q ss_pred CCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee------eEEEecCCc-eEEEEeCCcCc
Q psy505 13 NPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA------SLSVGTKSG-YRLFSLNSIDT 85 (161)
Q Consensus 13 ~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~------~lasgs~dg-iriwd~~~~~~ 85 (161)
+..+|.+++++|++.++++++. ||.|++||+.+++++..+.+|...|.+++ +|++|+.|| |++||+++++.
T Consensus 64 h~~~v~~~~~~~~~~~l~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 141 (312)
T 4ery_A 64 HKLGISDVAWSSDSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 141 (312)
T ss_dssp CSSCEEEEEECTTSSEEEEEET--TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE
T ss_pred CCCceEEEEEcCCCCEEEEECC--CCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE
Confidence 4557999999999999999776 99999999999999999999999999998 899999999 99999999876
Q ss_pred eeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEE--ecCceEEEEECCc--EEEEEecc
Q psy505 86 LEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYS--FSNTILAVKLNRK--KEEEEDEE 156 (161)
Q Consensus 86 ~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~--~~~~V~~v~~~~~--~~vv~~~~ 156 (161)
+ ..+.+|... +.+++|+|++..+++++.|+.|++||+++++++..+. +...|..++|+|+ .+++...+
T Consensus 142 ~-~~~~~~~~~--v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 213 (312)
T 4ery_A 142 L-KTLPAHSDP--VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 213 (312)
T ss_dssp E-EEECCCSSC--EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETT
T ss_pred E-EEecCCCCc--EEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCC
Confidence 5 455666543 7788999998888888889999999999999888774 3568999999997 45555444
No 21
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.89 E-value=3.4e-22 Score=158.26 Aligned_cols=146 Identities=12% Similarity=0.163 Sum_probs=111.4
Q ss_pred ceEEecCCCCCCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCC----CceeeeeccCccceeee------eEEEecC
Q psy505 3 VLHTIRDTPPNPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNL----HAKTMIPAHDSPLAALA------SLSVGTK 72 (161)
Q Consensus 3 ~~~~~~~~~~~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~----~~~~~l~~H~~~V~~l~------~lasgs~ 72 (161)
++.++ .. +...|.+++++|+|.+||+++. ||+|+|||+.+. +++..+.+|..+|++++ +|++|+.
T Consensus 99 ~~~~~-~~--h~~~V~~v~~sp~g~~las~s~--D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~ 173 (330)
T 2hes_X 99 LLAII-EG--HENEVKGVAWSNDGYYLATCSR--DKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSY 173 (330)
T ss_dssp EEEEE-C------CEEEEEECTTSCEEEEEET--TSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEET
T ss_pred eEEEE-cC--CCCcEEEEEECCCCCEEEEEeC--CCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcC
Confidence 44555 34 3445899999999999999776 999999999432 46778999999999998 8999999
Q ss_pred Cc-eEEEEeCCc--CceeeEEeecCcceEEEEEeecCC--eEEEEecCCCCeEEEEecCCC--------CeEEEEE--ec
Q psy505 73 SG-YRLFSLNSI--DTLEQIYENSQEDVCIVERLFSSS--LVAVVSLSSPRKLTVCHFKRG--------SEICNYS--FS 137 (161)
Q Consensus 73 dg-iriwd~~~~--~~~~~~~~~~~~~~~v~~~~fs~~--~~~~~s~~~d~~i~iWD~~~~--------~~i~~l~--~~ 137 (161)
|+ |||||.+++ +++ ..+.+|... |.+++|+|+ +..+++++.|++|+|||++.+ .++..+. |.
T Consensus 174 D~~i~iW~~~~~~~~~~-~~~~~h~~~--v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~ 250 (330)
T 2hes_X 174 DDTVRIWKDYDDDWECV-AVLNGHEGT--VWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHK 250 (330)
T ss_dssp TSCEEEEEEETTEEEEE-EEECCCSSC--EEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCS
T ss_pred CCeEEEEECCCCCeeEE-EEccCCCCc--EEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccc
Confidence 99 999999765 333 466788754 678889997 677888889999999998765 3333443 56
Q ss_pred CceEEEEECCcE-EEEEecc
Q psy505 138 NTILAVKLNRKK-EEEEDEE 156 (161)
Q Consensus 138 ~~V~~v~~~~~~-~vv~~~~ 156 (161)
..|++++|+++. ++.+..+
T Consensus 251 ~~v~~v~~s~~~~l~s~~~d 270 (330)
T 2hes_X 251 RQVYNVAWGFNGLIASVGAD 270 (330)
T ss_dssp SCEEEEEECTTSCEEEEETT
T ss_pred cceEEEEEcCCCEEEEEeCC
Confidence 799999999874 4444444
No 22
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.89 E-value=4.1e-22 Score=158.21 Aligned_cols=139 Identities=13% Similarity=0.126 Sum_probs=111.7
Q ss_pred cceEEecCCCCCCceeEEeec-----CC-CceEEEEcCCCCcceEEEEEcCCC-------CceeeeeccCccceeee---
Q psy505 2 KVLHTIRDTPPNPNGICCLCV-----NS-DNCYLAYPGSNSIGEVQIFDADNL-------HAKTMIPAHDSPLAALA--- 65 (161)
Q Consensus 2 ~~~~~~~~~~~~~~~v~~~~~-----~~-d~~~la~~g~~~dg~v~iWd~~~~-------~~~~~l~~H~~~V~~l~--- 65 (161)
+++.++ .+|.. .|.++++ +| |+.+||+++. ||+|+|||+.++ .+...+.+|..+|++++
T Consensus 12 ~~~~~l-~gH~~--~V~~~~~~~s~~~~~d~~~l~sgs~--D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~ 86 (343)
T 2xzm_R 12 VKRGIL-EGHSD--WVTSIVAGFSQKENEDSPVLISGSR--DKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQ 86 (343)
T ss_dssp EEEEEE-ECCSS--CEEEEEECCCSSTTCCCCEEEEEET--TSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECS
T ss_pred eeeeee-ccchh--hhhheeeEEEeecCCCCCEEEEEcC--CCEEEEEECCcCCcccccccccchhccCCCceEEEEECC
Confidence 456677 55544 5788877 66 8999998776 999999999754 35678899999999998
Q ss_pred ---eEEEecCCc-eEEEEeCCcCceeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEE----Eec
Q psy505 66 ---SLSVGTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNY----SFS 137 (161)
Q Consensus 66 ---~lasgs~dg-iriwd~~~~~~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l----~~~ 137 (161)
++++|+.|+ |||||+++++.+ ..+.+|... |.+++|+|++..+++++.|++|++||+.. ++...+ .+.
T Consensus 87 ~~~~l~s~s~D~~v~lwd~~~~~~~-~~~~~h~~~--v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~ 162 (343)
T 2xzm_R 87 ENCFAISSSWDKTLRLWDLRTGTTY-KRFVGHQSE--VYSVAFSPDNRQILSAGAEREIKLWNILG-ECKFSSAEKENHS 162 (343)
T ss_dssp STTEEEEEETTSEEEEEETTSSCEE-EEEECCCSC--EEEEEECSSTTEEEEEETTSCEEEEESSS-CEEEECCTTTSCS
T ss_pred CCCEEEEEcCCCcEEEEECCCCcEE-EEEcCCCCc--EEEEEECCCCCEEEEEcCCCEEEEEeccC-CceeeeecccCCC
Confidence 899999999 999999998766 466788754 77889999988888888999999999984 433333 256
Q ss_pred CceEEEEECCcE
Q psy505 138 NTILAVKLNRKK 149 (161)
Q Consensus 138 ~~V~~v~~~~~~ 149 (161)
..|.+++|+|+.
T Consensus 163 ~~v~~~~~~~~~ 174 (343)
T 2xzm_R 163 DWVSCVRYSPIM 174 (343)
T ss_dssp SCEEEEEECCCC
T ss_pred ceeeeeeecccc
Confidence 789999999963
No 23
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.89 E-value=1.8e-21 Score=151.88 Aligned_cols=148 Identities=11% Similarity=0.117 Sum_probs=114.1
Q ss_pred cceEEecCCCCCCceeEEeecCC--CceEEEEcCCCCcceEEEEEcCCCC--ceeeeeccCccceeee--------eEEE
Q psy505 2 KVLHTIRDTPPNPNGICCLCVNS--DNCYLAYPGSNSIGEVQIFDADNLH--AKTMIPAHDSPLAALA--------SLSV 69 (161)
Q Consensus 2 ~~~~~~~~~~~~~~~v~~~~~~~--d~~~la~~g~~~dg~v~iWd~~~~~--~~~~l~~H~~~V~~l~--------~las 69 (161)
+++.++ ..|. ..|.+++|+| +|.+||+++. ||+|+|||+++++ .+..+.+|..+|++++ +|++
T Consensus 44 ~~~~~l-~gH~--~~V~~v~~s~~~~g~~l~s~s~--D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s 118 (297)
T 2pm7_B 44 KLIDTL-TGHE--GPVWRVDWAHPKFGTILASCSY--DGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLV 118 (297)
T ss_dssp CCCEEE-CCCS--SCEEEEEECCGGGCSEEEEEET--TTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEE
T ss_pred EEEEEE-cccc--CCeEEEEecCCCcCCEEEEEcC--CCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEE
Confidence 355666 4444 4588888875 4789998776 9999999999874 6678899999999997 6999
Q ss_pred ecCCc-eEEEEeCCcCce-eeEEeecCcceEEEEEeecCCe-------------EEEEecCCCCeEEEEecCCCC----e
Q psy505 70 GTKSG-YRLFSLNSIDTL-EQIYENSQEDVCIVERLFSSSL-------------VAVVSLSSPRKLTVCHFKRGS----E 130 (161)
Q Consensus 70 gs~dg-iriwd~~~~~~~-~~~~~~~~~~~~v~~~~fs~~~-------------~~~~s~~~d~~i~iWD~~~~~----~ 130 (161)
|+.|| |++||++++... ...+.+|.. .+.+++|+|+. ..+++++.|++|+|||+++++ +
T Consensus 119 ~s~d~~v~~wd~~~~~~~~~~~~~~h~~--~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~ 196 (297)
T 2pm7_B 119 ASSDGKVSVVEFKENGTTSPIIIDAHAI--GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL 196 (297)
T ss_dssp EETTSEEEEEEBCSSSCBCCEEEECCSS--CEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEE
T ss_pred EECCCcEEEEEecCCCceeeeeeecccC--ccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEE
Confidence 99999 999999876322 245567764 47788899863 467778889999999998876 4
Q ss_pred EEEEE-ecCceEEEEECCc-----EEEEEecc
Q psy505 131 ICNYS-FSNTILAVKLNRK-----KEEEEDEE 156 (161)
Q Consensus 131 i~~l~-~~~~V~~v~~~~~-----~~vv~~~~ 156 (161)
+..+. |.+.|.+|+|+|+ .++.+..|
T Consensus 197 ~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D 228 (297)
T 2pm7_B 197 ESTLEGHSDWVRDVAWSPTVLLRSYMASVSQD 228 (297)
T ss_dssp EEEECCCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred EEEecCCCCceEEEEECCCCCCceEEEEEECC
Confidence 45565 6789999999996 35555544
No 24
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.89 E-value=7.2e-22 Score=157.28 Aligned_cols=141 Identities=9% Similarity=0.146 Sum_probs=115.9
Q ss_pred CCCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCC--ceeeeeccCccceeee------eEEEecCCc-eEEEEeCC
Q psy505 12 PNPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLH--AKTMIPAHDSPLAALA------SLSVGTKSG-YRLFSLNS 82 (161)
Q Consensus 12 ~~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~--~~~~l~~H~~~V~~l~------~lasgs~dg-iriwd~~~ 82 (161)
.+...|.+++++|||.+||+++. ||+|+|||+.++. ++..+.+|.++|++++ +|++|+.|+ |++||+++
T Consensus 59 ~h~~~v~~~~~sp~g~~l~s~s~--D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~ 136 (345)
T 3fm0_A 59 GHQRTVRKVAWSPCGNYLASASF--DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE 136 (345)
T ss_dssp SCSSCEEEEEECTTSSEEEEEET--TSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECT
T ss_pred ccCCcEEEEEECCCCCEEEEEEC--CCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCC
Confidence 45667999999999999999776 9999999998774 6788999999999999 899999999 99999987
Q ss_pred cCce--eeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeE--EEEE-ecCceEEEEECCc--EEEEEec
Q psy505 83 IDTL--EQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEI--CNYS-FSNTILAVKLNRK--KEEEEDE 155 (161)
Q Consensus 83 ~~~~--~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i--~~l~-~~~~V~~v~~~~~--~~vv~~~ 155 (161)
++.. ...+.+|.. .+.+++|+|++..+++++.|++|++||.++++.. ..+. |.+.|.+++|+|+ .++.+..
T Consensus 137 ~~~~~~~~~~~~h~~--~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~ 214 (345)
T 3fm0_A 137 EDEYECVSVLNSHTQ--DVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD 214 (345)
T ss_dssp TSCEEEEEEECCCCS--CEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred CCCeEEEEEecCcCC--CeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC
Confidence 6532 234556654 3778899999888888889999999999988644 4454 5789999999997 5666655
Q ss_pred c
Q psy505 156 E 156 (161)
Q Consensus 156 ~ 156 (161)
|
T Consensus 215 D 215 (345)
T 3fm0_A 215 D 215 (345)
T ss_dssp T
T ss_pred C
Confidence 5
No 25
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.88 E-value=8.6e-22 Score=167.96 Aligned_cols=118 Identities=8% Similarity=0.061 Sum_probs=100.8
Q ss_pred CCceeEEeecCCCce-EEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee------eEEEecCCc-eEEEEeCCcC
Q psy505 13 NPNGICCLCVNSDNC-YLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA------SLSVGTKSG-YRLFSLNSID 84 (161)
Q Consensus 13 ~~~~v~~~~~~~d~~-~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~------~lasgs~dg-iriwd~~~~~ 84 (161)
+...|.+++|+|++. .+++++. |++|++||..+++++.++.+|.+.|++++ +||+|+.|+ |||||+++++
T Consensus 146 h~~~v~~v~f~p~~~~~l~s~s~--D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~ 223 (611)
T 1nr0_A 146 QARAMNSVDFKPSRPFRIISGSD--DNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT 223 (611)
T ss_dssp CSSCEEEEEECSSSSCEEEEEET--TSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred CCCCceEEEECCCCCeEEEEEeC--CCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCc
Confidence 455799999999986 5777665 99999999999999999999999999999 899999999 9999999987
Q ss_pred ceeeEEe------ecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEE
Q psy505 85 TLEQIYE------NSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNY 134 (161)
Q Consensus 85 ~~~~~~~------~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l 134 (161)
+...+.. +|.+ .|.+++|+|++..+++++.|++|+|||+++++++..+
T Consensus 224 ~~~~~~~~~~~~~~h~~--~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~ 277 (611)
T 1nr0_A 224 KTGVFEDDSLKNVAHSG--SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI 277 (611)
T ss_dssp EEEECBCTTSSSCSSSS--CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred EeeeeccccccccccCC--CEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeee
Confidence 6533323 6765 4778999999999999999999999999998876544
No 26
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.88 E-value=9.6e-22 Score=167.66 Aligned_cols=147 Identities=10% Similarity=0.164 Sum_probs=115.2
Q ss_pred ceEEecCCCCCCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCc--eee---------------------------
Q psy505 3 VLHTIRDTPPNPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHA--KTM--------------------------- 53 (161)
Q Consensus 3 ~~~~~~~~~~~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~--~~~--------------------------- 53 (161)
++.++ .. |...|.+++|+|||.+||+++. ||+|+|||+.+++. ..+
T Consensus 51 ~~~~~-~~--h~~~v~~~~~spdg~~lasg~~--d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~ 125 (611)
T 1nr0_A 51 DTEIY-TE--HSHQTTVAKTSPSGYYCASGDV--HGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGR 125 (611)
T ss_dssp CCEEE-CC--CSSCEEEEEECTTSSEEEEEET--TSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCS
T ss_pred cCeEe-cC--CCCceEEEEECCCCcEEEEEeC--CCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCC
Confidence 34455 33 3445889999999999999776 99999999865432 222
Q ss_pred -----------------eeccCccceeee-------eEEEecCCc-eEEEEeCCcCceeeEEeecCcceEEEEEeecCCe
Q psy505 54 -----------------IPAHDSPLAALA-------SLSVGTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSL 108 (161)
Q Consensus 54 -----------------l~~H~~~V~~l~-------~lasgs~dg-iriwd~~~~~~~~~~~~~~~~~~~v~~~~fs~~~ 108 (161)
+.+|..+|++++ .|++|+.|+ |++||.++++.. ..+.+|.. .|.+++|+|++
T Consensus 126 ~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~-~~l~~H~~--~V~~v~fspdg 202 (611)
T 1nr0_A 126 ERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFK-STFGEHTK--FVHSVRYNPDG 202 (611)
T ss_dssp SCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEE-EEECCCSS--CEEEEEECTTS
T ss_pred CceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEe-eeeccccC--ceEEEEECCCC
Confidence 345666677666 489999999 999999887644 56778875 47789999999
Q ss_pred EEEEecCCCCeEEEEecCCCCeEEEE--------EecCceEEEEECCc--EEEEEeccc
Q psy505 109 VAVVSLSSPRKLTVCHFKRGSEICNY--------SFSNTILAVKLNRK--KEEEEDEEE 157 (161)
Q Consensus 109 ~~~~s~~~d~~i~iWD~~~~~~i~~l--------~~~~~V~~v~~~~~--~~vv~~~~~ 157 (161)
..+++++.|++|+|||.++++++..+ .|.+.|.+++|+|+ .++.+..|+
T Consensus 203 ~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~ 261 (611)
T 1nr0_A 203 SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK 261 (611)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTS
T ss_pred CEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCC
Confidence 99999999999999999999998887 36789999999997 566666553
No 27
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.88 E-value=2.1e-21 Score=157.05 Aligned_cols=135 Identities=16% Similarity=0.205 Sum_probs=114.1
Q ss_pred eeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee------eEEEecCCc-eEEEEeCCcCceee
Q psy505 16 GICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA------SLSVGTKSG-YRLFSLNSIDTLEQ 88 (161)
Q Consensus 16 ~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~------~lasgs~dg-iriwd~~~~~~~~~ 88 (161)
.|.+++++|||.++|+++. ||+|+|||+.+++.+..+.+|..+|.+++ +|++|+.|+ |++||+++++.. .
T Consensus 125 ~v~~v~~s~dg~~l~s~~~--d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~-~ 201 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAE--DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS-L 201 (393)
T ss_dssp BEEEEEECTTSSEEEEEET--TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE-E
T ss_pred eEEEEEECCCCCEEEEEcC--CCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeE-E
Confidence 4889999999999999776 99999999999999999999999999998 899999999 999999998654 3
Q ss_pred EEeecCcceEEEEEeecC-CeEEEEecCCCCeEEEEecCCCCeEEEE--------EecCceEEEEECCc--EEEEEecc
Q psy505 89 IYENSQEDVCIVERLFSS-SLVAVVSLSSPRKLTVCHFKRGSEICNY--------SFSNTILAVKLNRK--KEEEEDEE 156 (161)
Q Consensus 89 ~~~~~~~~~~v~~~~fs~-~~~~~~s~~~d~~i~iWD~~~~~~i~~l--------~~~~~V~~v~~~~~--~~vv~~~~ 156 (161)
.+..+. .+..++|+| ++..+++++.|++|+|||.++++++..+ .|.+.|.+++|+|+ .++....+
T Consensus 202 ~~~~~~---~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d 277 (393)
T 1erj_A 202 TLSIED---GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD 277 (393)
T ss_dssp EEECSS---CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEcCC---CcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCC
Confidence 334332 367788998 8888888889999999999999988776 25678999999997 45555544
No 28
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.88 E-value=4.1e-21 Score=152.45 Aligned_cols=138 Identities=10% Similarity=0.133 Sum_probs=109.9
Q ss_pred CCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee------eEEEecCCc-eEEEEeCCcCc
Q psy505 13 NPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA------SLSVGTKSG-YRLFSLNSIDT 85 (161)
Q Consensus 13 ~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~------~lasgs~dg-iriwd~~~~~~ 85 (161)
+...|.+++++|++.++++++. ||+|+|||+++++++..+.+|.++|.+++ +|++|+.|+ |++||+.. +.
T Consensus 75 h~~~V~~~~~~~~~~~l~s~s~--D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~ 151 (343)
T 2xzm_R 75 HNHFVSDLALSQENCFAISSSW--DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG-EC 151 (343)
T ss_dssp CSSCEEEEEECSSTTEEEEEET--TSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS-CE
T ss_pred CCCceEEEEECCCCCEEEEEcC--CCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-Cc
Confidence 4456899999999999998776 99999999999999999999999999999 899999999 99999974 32
Q ss_pred eeeEE--eecCcceEEEEEeecCCe----------EEEEecCCCCeEEEEecCCCCeEEEEE-ecCceEEEEECCc--EE
Q psy505 86 LEQIY--ENSQEDVCIVERLFSSSL----------VAVVSLSSPRKLTVCHFKRGSEICNYS-FSNTILAVKLNRK--KE 150 (161)
Q Consensus 86 ~~~~~--~~~~~~~~v~~~~fs~~~----------~~~~s~~~d~~i~iWD~~~~~~i~~l~-~~~~V~~v~~~~~--~~ 150 (161)
..... .+|.. .+.++.|+|++ ..+++++.|++|++|| .++++...+. |...|.+++|+|+ .+
T Consensus 152 ~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l 228 (343)
T 2xzm_R 152 KFSSAEKENHSD--WVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYI 228 (343)
T ss_dssp EEECCTTTSCSS--CEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEE
T ss_pred eeeeecccCCCc--eeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEE
Confidence 21111 14443 47788899875 4677777899999999 4556666665 6789999999998 46
Q ss_pred EEEecc
Q psy505 151 EEEDEE 156 (161)
Q Consensus 151 vv~~~~ 156 (161)
+....+
T Consensus 229 ~sgs~d 234 (343)
T 2xzm_R 229 ATGGKD 234 (343)
T ss_dssp EEEETT
T ss_pred EEEcCC
Confidence 655554
No 29
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.87 E-value=2.4e-21 Score=156.10 Aligned_cols=147 Identities=12% Similarity=0.170 Sum_probs=109.0
Q ss_pred cceEEecCCCCCCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceee-----------------
Q psy505 2 KVLHTIRDTPPNPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAAL----------------- 64 (161)
Q Consensus 2 ~~~~~~~~~~~~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l----------------- 64 (161)
++.+++ .+|. ..|.+++++|++.+|++++. ||+|+|||+.+++++..+.+|...|.++
T Consensus 57 ~~~~~l-~gH~--~~V~~~~~sp~~~~l~s~s~--D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~ 131 (380)
T 3iz6_a 57 VCCRTL-QGHS--GKVYSLDWTPEKNWIVSASQ--DGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSA 131 (380)
T ss_dssp EEEEEE-CCCS--SCEEEEEECTTSSCEEEEET--TSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSC
T ss_pred EEeecc-cccc--cEEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCc
Confidence 456677 5544 45999999999999999776 9999999999888777766665555433
Q ss_pred --------------------------------e-------eEEEecCCc-eEEEEeCCcCceeeEE-----eecCcceEE
Q psy505 65 --------------------------------A-------SLSVGTKSG-YRLFSLNSIDTLEQIY-----ENSQEDVCI 99 (161)
Q Consensus 65 --------------------------------~-------~lasgs~dg-iriwd~~~~~~~~~~~-----~~~~~~~~v 99 (161)
. .|++|+.|+ |++||+++++.+. .+ .+|.. .+
T Consensus 132 v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~-~~~~~~~~~h~~--~v 208 (380)
T 3iz6_a 132 CSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRIS-IFGSEFPSGHTA--DV 208 (380)
T ss_dssp CEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEE-EECCCSSSSCCS--CE
T ss_pred EEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEE-EeecccCCCCcc--Ce
Confidence 3 477777777 7788777776542 33 34543 46
Q ss_pred EEEeecC-CeEEEEecCCCCeEEEEecC-CCCeEEEEE-ecCceEEEEECCc--EEEEEecc
Q psy505 100 VERLFSS-SLVAVVSLSSPRKLTVCHFK-RGSEICNYS-FSNTILAVKLNRK--KEEEEDEE 156 (161)
Q Consensus 100 ~~~~fs~-~~~~~~s~~~d~~i~iWD~~-~~~~i~~l~-~~~~V~~v~~~~~--~~vv~~~~ 156 (161)
.++.|+| ++..+++++.|++|+|||++ .++++..+. |.+.|.+++|+|+ .++....|
T Consensus 209 ~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D 270 (380)
T 3iz6_a 209 LSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDD 270 (380)
T ss_dssp EEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSS
T ss_pred EEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCC
Confidence 7778875 66778888889999999998 457777775 6789999999997 55555554
No 30
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.87 E-value=2.1e-21 Score=156.46 Aligned_cols=141 Identities=16% Similarity=0.193 Sum_probs=115.2
Q ss_pred CCceeEEeecCC-CceEEEEcCCCCcceEEEEEcC-CCCceeeeeccCccceeee------eEEEecCCc-eEEEEeCCc
Q psy505 13 NPNGICCLCVNS-DNCYLAYPGSNSIGEVQIFDAD-NLHAKTMIPAHDSPLAALA------SLSVGTKSG-YRLFSLNSI 83 (161)
Q Consensus 13 ~~~~v~~~~~~~-d~~~la~~g~~~dg~v~iWd~~-~~~~~~~l~~H~~~V~~l~------~lasgs~dg-iriwd~~~~ 83 (161)
+...+.+++++| ++.++++++. ||+|++||++ +++++..+.+|.++|++++ +|++|+.|| |||||++++
T Consensus 204 h~~~v~~~~~~~~~~~~l~sgs~--D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~ 281 (380)
T 3iz6_a 204 HTADVLSLSINSLNANMFISGSC--DTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG 281 (380)
T ss_dssp CCSCEEEEEECSSSCCEEEEEET--TSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT
T ss_pred CccCeEEEEeecCCCCEEEEEEC--CCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC
Confidence 455688899876 7888888765 9999999998 5578899999999999998 899999999 999999998
Q ss_pred CceeeEEeecCc-----ceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEE-----ecCceEEEEECCc--EEE
Q psy505 84 DTLEQIYENSQE-----DVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYS-----FSNTILAVKLNRK--KEE 151 (161)
Q Consensus 84 ~~~~~~~~~~~~-----~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~-----~~~~V~~v~~~~~--~~v 151 (161)
+++ ..+..+.. ...+.+++|+|++..+++++.|+.|+|||..+++++..+. |.+.|.+++|+|+ .++
T Consensus 282 ~~~-~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~ 360 (380)
T 3iz6_a 282 HQL-QVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALC 360 (380)
T ss_dssp EEE-EEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEE
T ss_pred cEE-EEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEE
Confidence 765 34443321 1125688999999999999999999999999999888772 5689999999998 455
Q ss_pred EEecc
Q psy505 152 EEDEE 156 (161)
Q Consensus 152 v~~~~ 156 (161)
....|
T Consensus 361 sgs~D 365 (380)
T 3iz6_a 361 TGSWD 365 (380)
T ss_dssp EECTT
T ss_pred EeeCC
Confidence 55444
No 31
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.87 E-value=6.1e-21 Score=159.32 Aligned_cols=144 Identities=13% Similarity=0.230 Sum_probs=119.8
Q ss_pred ceEEecCCCCCCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee------eEEEecCCc-e
Q psy505 3 VLHTIRDTPPNPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA------SLSVGTKSG-Y 75 (161)
Q Consensus 3 ~~~~~~~~~~~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~------~lasgs~dg-i 75 (161)
+++++ .. +...+.+++++||+.++++++. ||+|++||+ +++.+..+.+|..+|++++ +||+|+.|+ |
T Consensus 418 ~~~~~-~~--~~~~v~~~~~s~d~~~l~~~~~--d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i 491 (577)
T 2ymu_A 418 LLQTL-TG--HSSSVWGVAFSPDDQTIASASD--DKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV 491 (577)
T ss_dssp EEEEE-EC--CSSCEEEEEECTTSSEEEEEET--TSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEE
T ss_pred EEEEe-cC--CCCCeEEEEECCCCCEEEEEcC--CCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEE
Confidence 34555 33 3446889999999999999776 999999996 5788899999999999998 899999999 9
Q ss_pred EEEEeCCcCceeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEE-ecCceEEEEECCc--EEEE
Q psy505 76 RLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYS-FSNTILAVKLNRK--KEEE 152 (161)
Q Consensus 76 riwd~~~~~~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~-~~~~V~~v~~~~~--~~vv 152 (161)
+|||. +++.+ ..+.+|... |.+++|+|++..+++++.|++|+|||. +++++..+. |.+.|.+++|+|| .|+.
T Consensus 492 ~iw~~-~~~~~-~~~~~h~~~--v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s 566 (577)
T 2ymu_A 492 KLWNR-NGQLL-QTLTGHSSS--VRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIAS 566 (577)
T ss_dssp EEEET-TSCEE-EEEECCSSC--EEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEE
T ss_pred EEEcC-CCCEE-EEEeCCCCC--EEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence 99995 56655 566788754 778899999998999889999999995 688888886 7899999999998 5666
Q ss_pred Eeccc
Q psy505 153 EDEEE 157 (161)
Q Consensus 153 ~~~~~ 157 (161)
+..|.
T Consensus 567 ~~~D~ 571 (577)
T 2ymu_A 567 ASSDK 571 (577)
T ss_dssp EETTS
T ss_pred EeCCC
Confidence 66554
No 32
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.87 E-value=4.9e-21 Score=149.23 Aligned_cols=149 Identities=13% Similarity=0.090 Sum_probs=107.0
Q ss_pred CcceEEecCCCCCCceeEEeecCCC-ceEEEEcCCCCcceEEEEEcCCCC-----ceeeeeccCccceeee------eEE
Q psy505 1 MKVLHTIRDTPPNPNGICCLCVNSD-NCYLAYPGSNSIGEVQIFDADNLH-----AKTMIPAHDSPLAALA------SLS 68 (161)
Q Consensus 1 ~~~~~~~~~~~~~~~~v~~~~~~~d-~~~la~~g~~~dg~v~iWd~~~~~-----~~~~l~~H~~~V~~l~------~la 68 (161)
|+|..|| ++|. ..|.+++++|+ +.+||++|. ||+|+|||+.+++ +...+++|.++|.+++ +|+
T Consensus 28 ~~l~~tL-~GH~--~~V~~v~~sp~~~~~l~S~s~--D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~ 102 (340)
T 4aow_A 28 MTLRGTL-KGHN--GWVTQIATTPQFPDMILSASR--DKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFAL 102 (340)
T ss_dssp EEEEEEE-CCCS--SCEEEEEECTTCTTEEEEEET--TSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred eEEEEEE-CCcc--CCEEEEEEeCCCCCEEEEEcC--CCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEE
Confidence 4567788 6654 45999999997 678888775 9999999998764 4677899999999988 677
Q ss_pred EecCCc-eEEEEeCCcCc------------------------------------------eeeEEeecCcceEEEEEeec
Q psy505 69 VGTKSG-YRLFSLNSIDT------------------------------------------LEQIYENSQEDVCIVERLFS 105 (161)
Q Consensus 69 sgs~dg-iriwd~~~~~~------------------------------------------~~~~~~~~~~~~~v~~~~fs 105 (161)
+|+.|| |++|+...+.. ......+|... +..+.|+
T Consensus 103 s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~--v~~~~~~ 180 (340)
T 4aow_A 103 SGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW--VSCVRFS 180 (340)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSC--EEEEEEC
T ss_pred EEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCc--ccceEEc
Confidence 777777 77776543321 11111223333 3344555
Q ss_pred C--CeEEEEecCCCCeEEEEecCCCCeEEEEE-ecCceEEEEECCc--EEEEEecc
Q psy505 106 S--SLVAVVSLSSPRKLTVCHFKRGSEICNYS-FSNTILAVKLNRK--KEEEEDEE 156 (161)
Q Consensus 106 ~--~~~~~~s~~~d~~i~iWD~~~~~~i~~l~-~~~~V~~v~~~~~--~~vv~~~~ 156 (161)
+ ....+++++.|++|++||.++++++..+. +.++|.+++|+|+ .+++...|
T Consensus 181 ~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D 236 (340)
T 4aow_A 181 PNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKD 236 (340)
T ss_dssp SCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred cCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCC
Confidence 4 44566777789999999999999988886 6789999999997 45555444
No 33
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.87 E-value=4e-22 Score=157.00 Aligned_cols=140 Identities=14% Similarity=0.064 Sum_probs=105.6
Q ss_pred ceEEecCCCCCCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCC--ceeeeeccCccceeee--------eEEEecC
Q psy505 3 VLHTIRDTPPNPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLH--AKTMIPAHDSPLAALA--------SLSVGTK 72 (161)
Q Consensus 3 ~~~~~~~~~~~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~--~~~~l~~H~~~V~~l~--------~lasgs~ 72 (161)
+++++. ..|...|.+++|+|+|.+||+++. ||+|+|||+.+++ ++.++.+|.++|++++ +|+||+.
T Consensus 4 ~~~~~~--~~H~~~V~~v~~s~~g~~lasgs~--D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~ 79 (316)
T 3bg1_A 4 VINTVD--TSHEDMIHDAQMDYYGTRLATCSS--DRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSY 79 (316)
T ss_dssp ------------CCEEEEEECGGGCEEEEEET--TTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEET
T ss_pred eeeeec--ccccCeEEEeeEcCCCCEEEEEeC--CCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEEC
Confidence 455552 245567999999999999999776 9999999998875 5678999999999987 6999999
Q ss_pred Cc-eEEEEeCCcCc-eeeEEeecCcceEEEEEeecCC--eEEEEecCCCCeEEEEecCCCCeEE---EE-EecCceEEEE
Q psy505 73 SG-YRLFSLNSIDT-LEQIYENSQEDVCIVERLFSSS--LVAVVSLSSPRKLTVCHFKRGSEIC---NY-SFSNTILAVK 144 (161)
Q Consensus 73 dg-iriwd~~~~~~-~~~~~~~~~~~~~v~~~~fs~~--~~~~~s~~~d~~i~iWD~~~~~~i~---~l-~~~~~V~~v~ 144 (161)
|+ |+|||+++++. ....+.+|... |.+++|+|+ +..+++++.|++|++||++.+.... .+ .|...|.++.
T Consensus 80 D~~v~iWd~~~~~~~~~~~~~~h~~~--V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~ 157 (316)
T 3bg1_A 80 DRKVIIWREENGTWEKSHEHAGHDSS--VNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVS 157 (316)
T ss_dssp TSCEEEECCSSSCCCEEEEECCCSSC--CCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCE
T ss_pred CCEEEEEECCCCcceEEEEccCCCCc--eEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEE
Confidence 99 99999988742 22345567654 678889987 7778888899999999998764321 12 2457899999
Q ss_pred ECCc
Q psy505 145 LNRK 148 (161)
Q Consensus 145 ~~~~ 148 (161)
|+|+
T Consensus 158 ~~~~ 161 (316)
T 3bg1_A 158 WAPA 161 (316)
T ss_dssp ECCC
T ss_pred Eccc
Confidence 9986
No 34
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.7e-21 Score=164.95 Aligned_cols=139 Identities=15% Similarity=0.126 Sum_probs=111.0
Q ss_pred CceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCC-ceeeeeccCccceee--e-------eEEEecCCc-eEEEEeCC
Q psy505 14 PNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLH-AKTMIPAHDSPLAAL--A-------SLSVGTKSG-YRLFSLNS 82 (161)
Q Consensus 14 ~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~-~~~~l~~H~~~V~~l--~-------~lasgs~dg-iriwd~~~ 82 (161)
...|.+++++|++ .||+++. ||+|++||+++++ +...+.+|.++|++| + +|||||.|| |||||+++
T Consensus 266 ~~~v~sv~~s~~~-~lasgs~--DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~ 342 (524)
T 2j04_B 266 DSLITTFDFLSPT-TVVCGFK--NGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKD 342 (524)
T ss_dssp TTCEEEEEESSSS-EEEEEET--TSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGG
T ss_pred CCCEEEEEecCCC-eEEEEeC--CCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCC
Confidence 3468899998865 6777665 9999999999774 556799999999999 2 789999999 99999998
Q ss_pred cCceeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEE-ecCceEEEEECCcE--EEEEecc
Q psy505 83 IDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYS-FSNTILAVKLNRKK--EEEEDEE 156 (161)
Q Consensus 83 ~~~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~-~~~~V~~v~~~~~~--~vv~~~~ 156 (161)
+++. ..+.+|.....+.+++|+|++..+++++.|++|+|||+++++++..+. |.+.|.+|+|+|++ ++....|
T Consensus 343 ~~~~-~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~D 418 (524)
T 2j04_B 343 IATT-KTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSAD 418 (524)
T ss_dssp HHHH-CEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETT
T ss_pred CCcc-cccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECC
Confidence 7655 355566532235678899988778888889999999999999877764 78999999999984 4444444
No 35
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.87 E-value=1.1e-20 Score=152.93 Aligned_cols=138 Identities=15% Similarity=0.256 Sum_probs=114.7
Q ss_pred CCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCc------------------cceeee------eEE
Q psy505 13 NPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDS------------------PLAALA------SLS 68 (161)
Q Consensus 13 ~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~------------------~V~~l~------~la 68 (161)
+...|.+++|+|||.+||++ . |++++|||+.+++.+..+..|.. .|++++ +||
T Consensus 63 h~~~V~~v~fspdg~~la~g-~--~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 139 (393)
T 1erj_A 63 HTSVVCCVKFSNDGEYLATG-C--NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 139 (393)
T ss_dssp CSSCCCEEEECTTSSEEEEE-C--BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred CCCEEEEEEECCCCCEEEEE-c--CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence 55568899999999999984 4 78999999999999888877653 378887 899
Q ss_pred EecCCc-eEEEEeCCcCceeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEEecCceEEEEECC
Q psy505 69 VGTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYSFSNTILAVKLNR 147 (161)
Q Consensus 69 sgs~dg-iriwd~~~~~~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~~~~V~~v~~~~ 147 (161)
+|+.|| |+|||+++++.+ ..+.+|... |.+++|+|++..+++++.|++|++||++++++...+.+.+.|.+++|+|
T Consensus 140 s~~~d~~i~iwd~~~~~~~-~~~~~h~~~--v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~ 216 (393)
T 1erj_A 140 TGAEDRLIRIWDIENRKIV-MILQGHEQD--IYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSP 216 (393)
T ss_dssp EEETTSCEEEEETTTTEEE-EEECCCSSC--EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECS
T ss_pred EEcCCCeEEEEECCCCcEE-EEEccCCCC--EEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEEC
Confidence 999999 999999987654 567788754 7788999998888888899999999999999988888889999999998
Q ss_pred -c--EEEEEecc
Q psy505 148 -K--KEEEEDEE 156 (161)
Q Consensus 148 -~--~~vv~~~~ 156 (161)
+ .+++...+
T Consensus 217 ~~~~~l~~~s~d 228 (393)
T 1erj_A 217 GDGKYIAAGSLD 228 (393)
T ss_dssp TTCCEEEEEETT
T ss_pred CCCCEEEEEcCC
Confidence 4 45554443
No 36
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.86 E-value=2e-20 Score=146.44 Aligned_cols=139 Identities=10% Similarity=0.166 Sum_probs=117.4
Q ss_pred CCCceeEEeecCCC---ceEEEEcCCCCcceEEEEEcCC-CCce-eeeeccCccceeee------eEEEecCCc-eEEEE
Q psy505 12 PNPNGICCLCVNSD---NCYLAYPGSNSIGEVQIFDADN-LHAK-TMIPAHDSPLAALA------SLSVGTKSG-YRLFS 79 (161)
Q Consensus 12 ~~~~~v~~~~~~~d---~~~la~~g~~~dg~v~iWd~~~-~~~~-~~l~~H~~~V~~l~------~lasgs~dg-iriwd 79 (161)
.+...|.+++++|+ |.++++++. ||.|+|||+.+ +..+ ..+.+|.++|.+++ +|++|+.|| |++||
T Consensus 37 ~h~~~v~~~~~~~~~~~g~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd 114 (368)
T 3mmy_A 37 SPDDSIGCLSFSPPTLPGNFLIAGSW--ANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWD 114 (368)
T ss_dssp CCSSCEEEEEECCTTSSSEEEEEEET--TSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCCCceEEEEEcCCCCCceEEEEECC--CCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEE
Confidence 34556999999998 689998776 99999999998 5555 78999999999999 899999999 99999
Q ss_pred eCCcCceeeEEeecCcceEEEEEee--cCCeEEEEecCCCCeEEEEecCCCCeEEEEEecCceEEEEECCcEEEEEecc
Q psy505 80 LNSIDTLEQIYENSQEDVCIVERLF--SSSLVAVVSLSSPRKLTVCHFKRGSEICNYSFSNTILAVKLNRKKEEEEDEE 156 (161)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~v~~~~f--s~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~~~~V~~v~~~~~~~vv~~~~ 156 (161)
+++++.. . ..+|... +.+++| +|++..+++++.|++|++||+++++++..+..+..+.++.+.++.++++..+
T Consensus 115 ~~~~~~~-~-~~~~~~~--v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (368)
T 3mmy_A 115 LSSNQAI-Q-IAQHDAP--VKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAE 189 (368)
T ss_dssp TTTTEEE-E-EEECSSC--EEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGG
T ss_pred cCCCCce-e-eccccCc--eEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCC
Confidence 9987654 3 4456654 556667 8999888888889999999999999999999888999999988877777665
No 37
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.86 E-value=8.6e-21 Score=158.42 Aligned_cols=137 Identities=12% Similarity=0.156 Sum_probs=113.4
Q ss_pred cceEEecCCCCCCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee------eEEEecCCc-
Q psy505 2 KVLHTIRDTPPNPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA------SLSVGTKSG- 74 (161)
Q Consensus 2 ~~~~~~~~~~~~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~------~lasgs~dg- 74 (161)
|..|.| ++|. ..|.+++|+|||.+||+++. ||+|+|||. +++++++|.+|.++|++++ +||+|+.|+
T Consensus 7 ~e~~~L-~GH~--~~V~~~a~spdg~~las~~~--d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~ 80 (577)
T 2ymu_A 7 KERNRL-EAHS--SSVRGVAFSPDGQTIASASD--DKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT 80 (577)
T ss_dssp CEEEEE-CCCS--SCEEEEEECTTSSCEEEEET--TSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEeeEE-CCCC--CcEEEEEECCCCCEEEEEeC--CCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCE
Confidence 345667 5654 45999999999999999775 999999995 6889999999999999998 899999999
Q ss_pred eEEEEeCCcCceeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEEecCceEEEEECCc
Q psy505 75 YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYSFSNTILAVKLNRK 148 (161)
Q Consensus 75 iriwd~~~~~~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~~~~V~~v~~~~~ 148 (161)
|+|||. +++++ ..+.+|.. .|.+++|+|++..+++++.|+.+++||...........+...|..+.++|+
T Consensus 81 i~vWd~-~~~~~-~~~~~~~~--~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 150 (577)
T 2ymu_A 81 VKLWNR-NGQLL-QTLTGHSS--SVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPD 150 (577)
T ss_dssp EEEEET-TSCEE-EEECCCSS--CEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTT
T ss_pred EEEEEC-CCCEE-EEEECCCC--CEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecC
Confidence 999996 55655 56677765 477899999999999988999999999875544333346789999999987
No 38
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.86 E-value=1.2e-20 Score=151.95 Aligned_cols=139 Identities=13% Similarity=0.028 Sum_probs=107.5
Q ss_pred eeEEeecCCCceEEEE-cCCCCcceEEEEEcCCCCceeeeeccCccceeee------eEEEecCCceEEEEeCCcCceee
Q psy505 16 GICCLCVNSDNCYLAY-PGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA------SLSVGTKSGYRLFSLNSIDTLEQ 88 (161)
Q Consensus 16 ~v~~~~~~~d~~~la~-~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~------~lasgs~dgiriwd~~~~~~~~~ 88 (161)
.+.+++|+|||+++|+ +++. |++|||||+.+++++..+. |.++|.+++ ++++++++++++|+..+++.+..
T Consensus 135 ~~~~v~fSpDg~~la~as~~~-d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~ 212 (365)
T 4h5i_A 135 YTKLVYISREGTVAAIASSKV-PAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIAR 212 (365)
T ss_dssp CEEEEEECTTSSCEEEEESCS-SCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEE
T ss_pred CEEEEEEcCCCCEEEEEECCC-CCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccceeEEEEEeccCcceee
Confidence 4778889999998764 3443 9999999999999988886 778899998 88999888877777665543211
Q ss_pred -EEeec------------------------------------------------CcceEEEEEeecCCeEEEEecCCCCe
Q psy505 89 -IYENS------------------------------------------------QEDVCIVERLFSSSLVAVVSLSSPRK 119 (161)
Q Consensus 89 -~~~~~------------------------------------------------~~~~~v~~~~fs~~~~~~~s~~~d~~ 119 (161)
...+| .+...|.+++|+|++..+++++.|++
T Consensus 213 ~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~ 292 (365)
T 4h5i_A 213 KTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNS 292 (365)
T ss_dssp ECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSC
T ss_pred eecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCE
Confidence 00111 00113667899999999999999999
Q ss_pred EEEEecCCCCeEEEE-E-ecCceEEEEECCc--EEEEEecc
Q psy505 120 LTVCHFKRGSEICNY-S-FSNTILAVKLNRK--KEEEEDEE 156 (161)
Q Consensus 120 i~iWD~~~~~~i~~l-~-~~~~V~~v~~~~~--~~vv~~~~ 156 (161)
|+|||+++++++..+ . |..+|.+|+|+|| .|+.+-.|
T Consensus 293 V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D 333 (365)
T 4h5i_A 293 IALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAA 333 (365)
T ss_dssp EEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETT
T ss_pred EEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCC
Confidence 999999999999886 3 7899999999998 45555555
No 39
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.86 E-value=3.2e-20 Score=149.93 Aligned_cols=132 Identities=13% Similarity=0.157 Sum_probs=116.4
Q ss_pred CCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee----eEEEecCCc-eEEEEeCCcCcee
Q psy505 13 NPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA----SLSVGTKSG-YRLFSLNSIDTLE 87 (161)
Q Consensus 13 ~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~----~lasgs~dg-iriwd~~~~~~~~ 87 (161)
+...|.+++++|++.++++++. ||.|++||+.+++.+..+.+|...|.+++ +|++|+.|| |++||+++.....
T Consensus 133 ~~~~v~~v~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 210 (401)
T 4aez_A 133 ESTYVASVKWSHDGSFLSVGLG--NGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQI 210 (401)
T ss_dssp TTCCEEEEEECTTSSEEEEEET--TSCEEEEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEE
T ss_pred CCCCEEEEEECCCCCEEEEECC--CCeEEEEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCccee
Confidence 4567999999999999999776 99999999999999999999999999999 999999999 9999998555444
Q ss_pred eEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEE-ecCceEEEEECCc
Q psy505 88 QIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYS-FSNTILAVKLNRK 148 (161)
Q Consensus 88 ~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~-~~~~V~~v~~~~~ 148 (161)
..+.+|.. .+.+++|+|++..+++++.|+.|++||+++++++..+. +...|.+++|+|+
T Consensus 211 ~~~~~~~~--~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~ 270 (401)
T 4aez_A 211 GTLQGHSS--EVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPW 270 (401)
T ss_dssp EEEECCSS--CEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTT
T ss_pred eEEcCCCC--CeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCC
Confidence 56677765 47788999998888888889999999999999988875 6789999999995
No 40
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.86 E-value=9.1e-21 Score=163.32 Aligned_cols=139 Identities=12% Similarity=0.139 Sum_probs=114.1
Q ss_pred CCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee------eEEEecCCc-eEEEEeCCcCc
Q psy505 13 NPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA------SLSVGTKSG-YRLFSLNSIDT 85 (161)
Q Consensus 13 ~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~------~lasgs~dg-iriwd~~~~~~ 85 (161)
|...|.+++++|+|.+|++++. ||+|+|||+.+++++..+.+|.++|.+++ +|+|||.|+ |||||......
T Consensus 429 h~~~v~~v~~s~~g~~l~sgs~--Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~ 506 (694)
T 3dm0_A 429 HSHFVEDVVLSSDGQFALSGSW--DGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK 506 (694)
T ss_dssp CSSCEEEEEECTTSSEEEEEET--TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE
T ss_pred CCCcEEEEEECCCCCEEEEEeC--CCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcc
Confidence 4456889999999999999776 99999999999999999999999999998 899999999 99999865322
Q ss_pred eeeEE---eecCcceEEEEEeecCCe--EEEEecCCCCeEEEEecCCCCeEEEEE-ecCceEEEEECCc--EEEEEecc
Q psy505 86 LEQIY---ENSQEDVCIVERLFSSSL--VAVVSLSSPRKLTVCHFKRGSEICNYS-FSNTILAVKLNRK--KEEEEDEE 156 (161)
Q Consensus 86 ~~~~~---~~~~~~~~v~~~~fs~~~--~~~~s~~~d~~i~iWD~~~~~~i~~l~-~~~~V~~v~~~~~--~~vv~~~~ 156 (161)
. .+. .+|.. .+.+++|+|++ ..+++++.|++|+|||+++++++..+. |.+.|.+++|+|+ .++....+
T Consensus 507 ~-~~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~D 582 (694)
T 3dm0_A 507 Y-TISEGGEGHRD--WVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKD 582 (694)
T ss_dssp E-EECSSTTSCSS--CEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred e-eeccCCCCCCC--cEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCC
Confidence 2 222 24543 47788899876 457777789999999999999988886 6789999999997 45555544
No 41
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.86 E-value=1.3e-20 Score=163.07 Aligned_cols=148 Identities=13% Similarity=0.167 Sum_probs=123.4
Q ss_pred CcceEEecCCCCCCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee------eEEEecCCc
Q psy505 1 MKVLHTIRDTPPNPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA------SLSVGTKSG 74 (161)
Q Consensus 1 ~~~~~~~~~~~~~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~------~lasgs~dg 74 (161)
|++.+++ ..+ +..|.+++++|||.++|+++. ||.|+|||+.+++.+..+.+|.++|++++ +|++|+.||
T Consensus 3 l~~~~~~-~~h--~~~v~~i~~sp~~~~la~~~~--~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 77 (814)
T 3mkq_A 3 LDIKKTF-SNR--SDRVKGIDFHPTEPWVLTTLY--SGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF 77 (814)
T ss_dssp CCCEEEE-EEE--CSCEEEEEECSSSSEEEEEET--TSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTS
T ss_pred cccceee-ecC--CCceEEEEECCCCCEEEEEeC--CCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCC
Confidence 4567777 444 445999999999999999776 99999999999999999999999999999 899999999
Q ss_pred -eEEEEeCCcCceeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCC-CeEEEEE-ecCceEEEEECC-c--
Q psy505 75 -YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRG-SEICNYS-FSNTILAVKLNR-K-- 148 (161)
Q Consensus 75 -iriwd~~~~~~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~-~~i~~l~-~~~~V~~v~~~~-~-- 148 (161)
|++||+.+++.+ ..+.+|.. .+.+++|+|++..+++++.|++|++||+.++ .+...+. +...|.+++|+| +
T Consensus 78 ~i~vw~~~~~~~~-~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 154 (814)
T 3mkq_A 78 RIRVFNYNTGEKV-VDFEAHPD--YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS 154 (814)
T ss_dssp EEEEEETTTCCEE-EEEECCSS--CEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEE
T ss_pred eEEEEECCCCcEE-EEEecCCC--CEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCC
Confidence 999999998766 45567765 4778899999988888888999999999987 5555665 678999999999 5
Q ss_pred EEEEEecc
Q psy505 149 KEEEEDEE 156 (161)
Q Consensus 149 ~~vv~~~~ 156 (161)
.++++..+
T Consensus 155 ~l~~~~~d 162 (814)
T 3mkq_A 155 TFASGCLD 162 (814)
T ss_dssp EEEEEETT
T ss_pred EEEEEeCC
Confidence 44444443
No 42
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.86 E-value=3.3e-20 Score=149.08 Aligned_cols=142 Identities=12% Similarity=0.112 Sum_probs=116.5
Q ss_pred CCCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee------eEEEecCCc-eEEEEeCCcC
Q psy505 12 PNPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA------SLSVGTKSG-YRLFSLNSID 84 (161)
Q Consensus 12 ~~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~------~lasgs~dg-iriwd~~~~~ 84 (161)
.+...|.+++++|++.++++++. ||+|++||+.+++++..+.+|..+|.+++ +|++|+.|| |++||+++++
T Consensus 137 ~h~~~v~~~~~~~~~~~l~s~s~--d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 214 (420)
T 3vl1_A 137 AHVSEITKLKFFPSGEALISSSQ--DMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT 214 (420)
T ss_dssp SSSSCEEEEEECTTSSEEEEEET--TSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred cccCccEEEEECCCCCEEEEEeC--CCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc
Confidence 45567999999999999998776 99999999999999999999999999999 899999999 9999999987
Q ss_pred ceeeEEeecC---cceE-------------------EEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEE--ecCce
Q psy505 85 TLEQIYENSQ---EDVC-------------------IVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYS--FSNTI 140 (161)
Q Consensus 85 ~~~~~~~~~~---~~~~-------------------v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~--~~~~V 140 (161)
.+ ..+..+. ..+. +.+++|+|++..+++++.|+.|++||+++++.+..+. +...|
T Consensus 215 ~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v 293 (420)
T 3vl1_A 215 TI-HTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSC 293 (420)
T ss_dssp EE-EEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCE
T ss_pred ee-EEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCc
Confidence 65 3444332 2221 2234568889888988899999999999999887775 46799
Q ss_pred EEEEECCc---EEEEEecc
Q psy505 141 LAVKLNRK---KEEEEDEE 156 (161)
Q Consensus 141 ~~v~~~~~---~~vv~~~~ 156 (161)
.+++|+|+ .+++...+
T Consensus 294 ~~~~~~~~~~~~l~~g~~d 312 (420)
T 3vl1_A 294 NSLTVDGNNANYIYAGYEN 312 (420)
T ss_dssp EEEEECSSCTTEEEEEETT
T ss_pred eeEEEeCCCCCEEEEEeCC
Confidence 99999998 56665554
No 43
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.86 E-value=6.7e-20 Score=142.15 Aligned_cols=139 Identities=14% Similarity=0.131 Sum_probs=117.7
Q ss_pred CCCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCC--ceeeeeccCccceeee------eEEEecCCc-eEEEEeCC
Q psy505 12 PNPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLH--AKTMIPAHDSPLAALA------SLSVGTKSG-YRLFSLNS 82 (161)
Q Consensus 12 ~~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~--~~~~l~~H~~~V~~l~------~lasgs~dg-iriwd~~~ 82 (161)
.+...+.+++++|++.++++++. ||.|++||+.+++ ....+.+|..+|.+++ +|++|+.|| |++||+++
T Consensus 95 ~~~~~v~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~ 172 (337)
T 1gxr_A 95 NRDNYIRSCKLLPDGCTLIVGGE--ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN 172 (337)
T ss_dssp CTTSBEEEEEECTTSSEEEEEES--SSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred CCCCcEEEEEEcCCCCEEEEEcC--CCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC
Confidence 45567999999999999998776 9999999999987 6678899999999998 899999999 99999998
Q ss_pred cCceeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEEecCceEEEEECCc--EEEEEec
Q psy505 83 IDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYSFSNTILAVKLNRK--KEEEEDE 155 (161)
Q Consensus 83 ~~~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~~~~V~~v~~~~~--~~vv~~~ 155 (161)
++.. ..+.+|.. .+.+++|+|++..+++++.|+.|++||+++++.+..+.+...|.+++|+|+ .+++...
T Consensus 173 ~~~~-~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 244 (337)
T 1gxr_A 173 QTLV-RQFQGHTD--GASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGME 244 (337)
T ss_dssp TEEE-EEECCCSS--CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred Ccee-eeeecccC--ceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcC
Confidence 7655 45566664 477889999887788877899999999999999988889999999999997 4555443
No 44
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.85 E-value=7.6e-21 Score=154.19 Aligned_cols=150 Identities=12% Similarity=0.157 Sum_probs=117.6
Q ss_pred cceEEecCCCCCCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeee-ccCccceee----e------eEEEe
Q psy505 2 KVLHTIRDTPPNPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIP-AHDSPLAAL----A------SLSVG 70 (161)
Q Consensus 2 ~~~~~~~~~~~~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~-~H~~~V~~l----~------~lasg 70 (161)
++++++ ..+++...|.+++++|++.++++++. ||+|++||+++++++.++. +|..+|.++ . +|++|
T Consensus 203 ~~~~~~-~~~~h~~~v~~~~~s~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~ 279 (437)
T 3gre_A 203 ERLQII-ENSPRHGAVSSICIDEECCVLILGTT--RGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGG 279 (437)
T ss_dssp CEEEEE-ECCGGGCCEEEEEECTTSCEEEEEET--TSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEE
T ss_pred eeeEEE-ccCCCCCceEEEEECCCCCEEEEEcC--CCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEE
Confidence 456677 45445667999999999999999776 9999999999999999987 888999999 3 89999
Q ss_pred cCCc-eEEEEeCCcCceeeEEeecCc------------------------ceEEEEEeecCCeEEEEecCCCCeEEEEec
Q psy505 71 TKSG-YRLFSLNSIDTLEQIYENSQE------------------------DVCIVERLFSSSLVAVVSLSSPRKLTVCHF 125 (161)
Q Consensus 71 s~dg-iriwd~~~~~~~~~~~~~~~~------------------------~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~ 125 (161)
+.|| |+|||+++++++ ..+.+|.. ...+.+++|+ ++..+++++.|+.|++||+
T Consensus 280 ~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~ 357 (437)
T 3gre_A 280 SSKTFLTIWNFVKGHCQ-YAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSL 357 (437)
T ss_dssp STTEEEEEEETTTTEEE-EEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEET
T ss_pred cCCCcEEEEEcCCCcEE-EEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEEC
Confidence 9999 999999988765 34444421 1125567788 5567788888999999999
Q ss_pred CCCCeEEEEE--------------------------------------ecCceEEEEECCc----EEEEEecc
Q psy505 126 KRGSEICNYS--------------------------------------FSNTILAVKLNRK----KEEEEDEE 156 (161)
Q Consensus 126 ~~~~~i~~l~--------------------------------------~~~~V~~v~~~~~----~~vv~~~~ 156 (161)
++++++..+. |.+.|.+++|+++ .++.+..+
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~d 430 (437)
T 3gre_A 358 NELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNS 430 (437)
T ss_dssp TCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETT
T ss_pred CCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCC
Confidence 9998777665 5678999999876 55555544
No 45
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.85 E-value=1.3e-20 Score=151.89 Aligned_cols=136 Identities=7% Similarity=0.071 Sum_probs=114.4
Q ss_pred CCceeEEeecCC-CceEEEEcCCCCcceEEEEEcCCC-------CceeeeeccCccceeee-------eEEEecCCc-eE
Q psy505 13 NPNGICCLCVNS-DNCYLAYPGSNSIGEVQIFDADNL-------HAKTMIPAHDSPLAALA-------SLSVGTKSG-YR 76 (161)
Q Consensus 13 ~~~~v~~~~~~~-d~~~la~~g~~~dg~v~iWd~~~~-------~~~~~l~~H~~~V~~l~-------~lasgs~dg-ir 76 (161)
+...|.+++++| ++.++|+++. ||+|+|||+.++ +++..+.+|...|.+++ +|++|+.|| |+
T Consensus 80 h~~~V~~~~~~p~~~~~l~s~s~--dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~ 157 (402)
T 2aq5_A 80 HTAPVLDIAWCPHNDNVIASGSE--DCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVIL 157 (402)
T ss_dssp CSSCEEEEEECTTCTTEEEEEET--TSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEE
T ss_pred CCCCEEEEEeCCCCCCEEEEEeC--CCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEE
Confidence 556799999999 8999998776 999999999998 67889999999999998 799999999 99
Q ss_pred EEEeCCcCceeeEE--eecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEE-E-ecC-ceEEEEECCcEEE
Q psy505 77 LFSLNSIDTLEQIY--ENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNY-S-FSN-TILAVKLNRKKEE 151 (161)
Q Consensus 77 iwd~~~~~~~~~~~--~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l-~-~~~-~V~~v~~~~~~~v 151 (161)
|||+++++.+ ..+ .+|.. .+.+++|+|++..+++++.|+.|+|||+++++++..+ . +.+ .+..+.|+|+.-.
T Consensus 158 iwd~~~~~~~-~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (402)
T 2aq5_A 158 VWDVGTGAAV-LTLGPDVHPD--TIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKI 234 (402)
T ss_dssp EEETTTTEEE-EEECTTTCCS--CEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEE
T ss_pred EEECCCCCcc-EEEecCCCCC--ceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcE
Confidence 9999998765 344 45654 4778899999888888888999999999999999888 3 444 4899999998444
Q ss_pred EE
Q psy505 152 EE 153 (161)
Q Consensus 152 v~ 153 (161)
++
T Consensus 235 l~ 236 (402)
T 2aq5_A 235 LT 236 (402)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 46
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.85 E-value=3.9e-21 Score=157.20 Aligned_cols=140 Identities=13% Similarity=0.102 Sum_probs=110.1
Q ss_pred CCceeEEeecCC-CceEEEEcCCCCcceEEEEEcCCCCce--eeeeccCccceeee-------eEEEecCCc-eEEEEeC
Q psy505 13 NPNGICCLCVNS-DNCYLAYPGSNSIGEVQIFDADNLHAK--TMIPAHDSPLAALA-------SLSVGTKSG-YRLFSLN 81 (161)
Q Consensus 13 ~~~~v~~~~~~~-d~~~la~~g~~~dg~v~iWd~~~~~~~--~~l~~H~~~V~~l~-------~lasgs~dg-iriwd~~ 81 (161)
+...|.+|+|+| ++.+||+++. ||+|+|||+.+++.. ..+.+|.++|++|+ +|+|||.|| |||||++
T Consensus 118 ~~~~V~~l~~~P~~~~~lasGs~--dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~ 195 (435)
T 4e54_B 118 FDRRATSLAWHPTHPSTVAVGSK--GGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFK 195 (435)
T ss_dssp CSSCEEEEEECSSCTTCEEEEET--TSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETT
T ss_pred CCCCEEEEEEeCCCCCEEEEEeC--CCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeecc
Confidence 445699999999 5678888665 999999999887654 45679999999998 899999999 9999998
Q ss_pred CcCceeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEE-ecCceEEEEECCc---EEEEEecc
Q psy505 82 SIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYS-FSNTILAVKLNRK---KEEEEDEE 156 (161)
Q Consensus 82 ~~~~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~-~~~~V~~v~~~~~---~~vv~~~~ 156 (161)
++. +..+..++.....+.+++|+|++..+++++.|++|++||++ ++++..+. |...|.+++|+|+ .++....|
T Consensus 196 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d 272 (435)
T 4e54_B 196 GNI-LRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVD 272 (435)
T ss_dssp SCE-EEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETT
T ss_pred CCc-eeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCc
Confidence 743 43444444445567789999999889999999999999986 45555554 6789999999986 34444444
No 47
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.85 E-value=4.7e-20 Score=142.45 Aligned_cols=113 Identities=13% Similarity=0.110 Sum_probs=93.2
Q ss_pred CCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCC----CceeeeeccCccceeee--------eEEEecCCc-eEEEE
Q psy505 13 NPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNL----HAKTMIPAHDSPLAALA--------SLSVGTKSG-YRLFS 79 (161)
Q Consensus 13 ~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~----~~~~~l~~H~~~V~~l~--------~lasgs~dg-iriwd 79 (161)
|...|.+++++|++.+||+++. ||.|++||+.++ +....+.+|..+|.+++ +|++|+.|| |++||
T Consensus 10 H~~~v~~~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd 87 (351)
T 3f3f_A 10 HDDLVHDVVYDFYGRHVATCSS--DQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWE 87 (351)
T ss_dssp CSSCEEEEEECSSSSEEEEEET--TSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred cccceeEEEEcCCCCEEEEeeC--CCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEe
Confidence 4556999999999999999776 999999999987 36677899999999997 799999999 99999
Q ss_pred eCCcCc--------eeeEEeecCcceEEEEEeecCC--eEEEEecCCCCeEEEEecCCCC
Q psy505 80 LNSIDT--------LEQIYENSQEDVCIVERLFSSS--LVAVVSLSSPRKLTVCHFKRGS 129 (161)
Q Consensus 80 ~~~~~~--------~~~~~~~~~~~~~v~~~~fs~~--~~~~~s~~~d~~i~iWD~~~~~ 129 (161)
+++++. ....+.+|.. .+.+++|+|+ +..+++++.|+.|++||+++++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 145 (351)
T 3f3f_A 88 EDPDQEECSGRRWNKLCTLNDSKG--SLYSVKFAPAHLGLKLACLGNDGILRLYDALEPS 145 (351)
T ss_dssp ECTTSCTTSSCSEEEEEEECCCSS--CEEEEEECCGGGCSEEEEEETTCEEEEEECSSTT
T ss_pred cCCCcccccccCcceeeeecccCC--ceeEEEEcCCCCCcEEEEecCCCcEEEecCCChH
Confidence 988631 2234556654 4778899998 7777777789999999988765
No 48
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.85 E-value=5.4e-21 Score=150.49 Aligned_cols=147 Identities=12% Similarity=0.094 Sum_probs=111.5
Q ss_pred ceEEecCCCCCCceeEEeecCC--CceEEEEcCCCCcceEEEEEcCCCC--ceeeeeccCccceeee--------eEEEe
Q psy505 3 VLHTIRDTPPNPNGICCLCVNS--DNCYLAYPGSNSIGEVQIFDADNLH--AKTMIPAHDSPLAALA--------SLSVG 70 (161)
Q Consensus 3 ~~~~~~~~~~~~~~v~~~~~~~--d~~~la~~g~~~dg~v~iWd~~~~~--~~~~l~~H~~~V~~l~--------~lasg 70 (161)
++.++ ..| ...|.+++++| ++.+||+++. ||+|+|||+++++ +...+.+|.++|++++ +||+|
T Consensus 49 ~~~~l-~gH--~~~V~~v~~~~~~~~~~l~s~s~--D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasg 123 (316)
T 3bg1_A 49 LIADL-RGH--EGPVWQVAWAHPMYGNILASCSY--DRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACG 123 (316)
T ss_dssp EEEEE-ECC--SSCEEEEEECCGGGSSCEEEEET--TSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEE
T ss_pred EEEEE-cCC--CccEEEEEeCCCCCCCEEEEEEC--CCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEE
Confidence 34566 444 44588888875 4788998776 9999999999874 5678899999999997 79999
Q ss_pred cCCc-eEEEEeCCcCce--eeEEeecCcceEEEEEeecCC-----------------eEEEEecCCCCeEEEEecCCC--
Q psy505 71 TKSG-YRLFSLNSIDTL--EQIYENSQEDVCIVERLFSSS-----------------LVAVVSLSSPRKLTVCHFKRG-- 128 (161)
Q Consensus 71 s~dg-iriwd~~~~~~~--~~~~~~~~~~~~v~~~~fs~~-----------------~~~~~s~~~d~~i~iWD~~~~-- 128 (161)
+.|| |++||++++... ...+.+|.. .+.+++|+|+ +..+++++.|++|+|||++.+
T Consensus 124 s~D~~i~lwd~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~ 201 (316)
T 3bg1_A 124 SSDGAISLLTYTGEGQWEVKKINNAHTI--GCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ 201 (316)
T ss_dssp CSSSCEEEEEECSSSCEEECCBTTSSSS--CBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSC
T ss_pred cCCCCEEEEecCCCCCcceeeeeccccC--CcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCc
Confidence 9999 999999875322 233445654 3667788886 246888889999999999865
Q ss_pred -CeEEEEE-ecCceEEEEECCc------EEEEEecc
Q psy505 129 -SEICNYS-FSNTILAVKLNRK------KEEEEDEE 156 (161)
Q Consensus 129 -~~i~~l~-~~~~V~~v~~~~~------~~vv~~~~ 156 (161)
+++..+. |.+.|.+++|+|+ .++.+..|
T Consensus 202 ~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D 237 (316)
T 3bg1_A 202 WKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQD 237 (316)
T ss_dssp EEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETT
T ss_pred cceeeecccCCCceEEEEecCCCCCCCceEEEEcCC
Confidence 3445554 6789999999996 36666655
No 49
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.85 E-value=2.3e-20 Score=146.94 Aligned_cols=138 Identities=12% Similarity=0.086 Sum_probs=108.9
Q ss_pred ceEEecCCCCCCceeEEeecCCCceEEEEcCCCCcceEEEEEcC--CCCceeeeeccCccceeee--------eEEEecC
Q psy505 3 VLHTIRDTPPNPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDAD--NLHAKTMIPAHDSPLAALA--------SLSVGTK 72 (161)
Q Consensus 3 ~~~~~~~~~~~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~--~~~~~~~l~~H~~~V~~l~--------~lasgs~ 72 (161)
++.++ ..| ...|.+++++|++.+||+++. ||.|+|||+. +++.+..+.+|.++|++++ +|++|+.
T Consensus 3 ~~~~~-~~h--~~~v~~~~~s~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~ 77 (379)
T 3jrp_A 3 MVVIA-NAH--NELIHDAVLDYYGKRLATCSS--DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY 77 (379)
T ss_dssp --CCE-EEC--CCCEEEEEECSSSSEEEEEET--TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred ccEEe-cCC--cccEEEEEEcCCCCEEEEEEC--CCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEecc
Confidence 44555 444 446999999999999999776 9999999998 5677889999999999998 8999999
Q ss_pred Cc-eEEEEeCCcCc-eeeEEeecCcceEEEEEeecCC--eEEEEecCCCCeEEEEecCCCCeEE--EE-EecCceEEEEE
Q psy505 73 SG-YRLFSLNSIDT-LEQIYENSQEDVCIVERLFSSS--LVAVVSLSSPRKLTVCHFKRGSEIC--NY-SFSNTILAVKL 145 (161)
Q Consensus 73 dg-iriwd~~~~~~-~~~~~~~~~~~~~v~~~~fs~~--~~~~~s~~~d~~i~iWD~~~~~~i~--~l-~~~~~V~~v~~ 145 (161)
|| |++||+++++. ....+.+|.. .+.+++|+|+ +..+++++.|++|++||+++++... .+ .+...|.+++|
T Consensus 78 dg~v~iwd~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~ 155 (379)
T 3jrp_A 78 DGKVLIWKEENGRWSQIAVHAVHSA--SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASW 155 (379)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCSS--CEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEE
T ss_pred CCEEEEEEcCCCceeEeeeecCCCc--ceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEE
Confidence 99 99999988751 1234455654 4778899998 7677777789999999999885433 33 35789999999
Q ss_pred CC
Q psy505 146 NR 147 (161)
Q Consensus 146 ~~ 147 (161)
+|
T Consensus 156 ~~ 157 (379)
T 3jrp_A 156 AP 157 (379)
T ss_dssp CC
T ss_pred cC
Confidence 98
No 50
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.85 E-value=5e-20 Score=166.58 Aligned_cols=140 Identities=13% Similarity=0.190 Sum_probs=122.0
Q ss_pred CCCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee------eEEEecCCc-eEEEEeCCcC
Q psy505 12 PNPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA------SLSVGTKSG-YRLFSLNSID 84 (161)
Q Consensus 12 ~~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~------~lasgs~dg-iriwd~~~~~ 84 (161)
.|...|.+++++|||.++|+++. ||+|++||+.+++++..+.+|.++|.+++ +||+|+.|| |+|||+.+++
T Consensus 613 ~h~~~v~~~~~s~~~~~l~s~~~--d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~ 690 (1249)
T 3sfz_A 613 PHTDAVYHACFSQDGQRIASCGA--DKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGK 690 (1249)
T ss_dssp CCSSCEEEEEECTTSSEEEEEET--TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred cccccEEEEEECCCCCEEEEEeC--CCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCc
Confidence 45667999999999999999776 99999999999999999999999999998 899999999 9999999988
Q ss_pred ceeeEEeecCcceEEEEEeecC--CeEEEEecCCCCeEEEEecCCCCeEEEEE-ecCceEEEEECCc--EEEEEecc
Q psy505 85 TLEQIYENSQEDVCIVERLFSS--SLVAVVSLSSPRKLTVCHFKRGSEICNYS-FSNTILAVKLNRK--KEEEEDEE 156 (161)
Q Consensus 85 ~~~~~~~~~~~~~~v~~~~fs~--~~~~~~s~~~d~~i~iWD~~~~~~i~~l~-~~~~V~~v~~~~~--~~vv~~~~ 156 (161)
.+ ..+.+|... +.+++|+| +...+++++.|++|++||+++++++..+. |.+.|.+++|+|+ .++++..+
T Consensus 691 ~~-~~~~~~~~~--v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~d 764 (1249)
T 3sfz_A 691 LV-HTYDEHSEQ--VNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSAD 764 (1249)
T ss_dssp EE-EEEECCSSC--EEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESS
T ss_pred eE-EEEcCCCCc--EEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECC
Confidence 66 566778654 66778888 67778888899999999999999998876 6789999999997 56666554
No 51
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.85 E-value=5.3e-21 Score=151.96 Aligned_cols=140 Identities=8% Similarity=0.066 Sum_probs=105.6
Q ss_pred CCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCC---ceeeeeccCccceeee------eEEEecCCc-eEEEEeCC
Q psy505 13 NPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLH---AKTMIPAHDSPLAALA------SLSVGTKSG-YRLFSLNS 82 (161)
Q Consensus 13 ~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~---~~~~l~~H~~~V~~l~------~lasgs~dg-iriwd~~~ 82 (161)
+...|.+++++|++.++++++. ||+|++||+.+++ +...+.+|..+|++++ +|++|+.|+ |++||+++
T Consensus 54 h~~~v~~~~~s~~~~~l~s~s~--d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 131 (377)
T 3dwl_C 54 HDKIVTCVDWAPKSNRIVTCSQ--DRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQ 131 (377)
T ss_dssp CSSCEEEEEECTTTCCEEEEET--TSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC--
T ss_pred CCceEEEEEEeCCCCEEEEEeC--CCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECC
Confidence 4556999999999999998776 9999999999987 6778899999999999 899999999 99999988
Q ss_pred cCc--eeeEEee-cCcceEEEEEeecCCeEEEEecCCCCeEEEEecC------------------CCCeEEEEEecCceE
Q psy505 83 IDT--LEQIYEN-SQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFK------------------RGSEICNYSFSNTIL 141 (161)
Q Consensus 83 ~~~--~~~~~~~-~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~------------------~~~~i~~l~~~~~V~ 141 (161)
++. +...+.+ |.. .+.+++|+|++..+++++.|++|++||++ .++++..+.+.+.|.
T Consensus 132 ~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 209 (377)
T 3dwl_C 132 ENDWWVSKHLKRPLRS--TILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVH 209 (377)
T ss_dssp ---CCCCEEECSSCCS--CEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEE
T ss_pred cccceeeeEeecccCC--CeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEE
Confidence 763 2234455 654 47789999998888888889999999985 344555565678999
Q ss_pred EEEECCc--EEEEEecc
Q psy505 142 AVKLNRK--KEEEEDEE 156 (161)
Q Consensus 142 ~v~~~~~--~~vv~~~~ 156 (161)
+++|+|+ .++....+
T Consensus 210 ~~~~sp~~~~l~~~~~d 226 (377)
T 3dwl_C 210 AVGFSPSGNALAYAGHD 226 (377)
T ss_dssp EEEECTTSSCEEEEETT
T ss_pred EEEECCCCCEEEEEeCC
Confidence 9999997 46666555
No 52
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.85 E-value=1.1e-19 Score=144.99 Aligned_cols=147 Identities=15% Similarity=0.196 Sum_probs=117.4
Q ss_pred cceEEecCCCCCCceeEEeecCCCc-eEEEEcCCCCcceEEEEEcCCCCceeeee--ccCccceeee-------eEEEec
Q psy505 2 KVLHTIRDTPPNPNGICCLCVNSDN-CYLAYPGSNSIGEVQIFDADNLHAKTMIP--AHDSPLAALA-------SLSVGT 71 (161)
Q Consensus 2 ~~~~~~~~~~~~~~~v~~~~~~~d~-~~la~~g~~~dg~v~iWd~~~~~~~~~l~--~H~~~V~~l~-------~lasgs 71 (161)
++++++ . .+...|.+++++|++ .++|+++. ||.|+|||+.+++....+. +|.+.|.+++ +|++|+
T Consensus 64 ~~~~~~-~--~h~~~v~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 138 (383)
T 3ei3_B 64 KLHRTA-S--PFDRRVTSLEWHPTHPTTVAVGSK--GGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSS 138 (383)
T ss_dssp EEEEEE-C--CCSSCEEEEEECSSCTTEEEEEEB--TSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEE
T ss_pred ceEEec-c--CCCCCEEEEEECCCCCCEEEEEcC--CCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEe
Confidence 345555 3 345679999999998 88888775 9999999999998887775 7999999998 899999
Q ss_pred CCc-eEEEEeCCcCceeeEEeecC-cceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEE-ecCceEEEEECCc
Q psy505 72 KSG-YRLFSLNSIDTLEQIYENSQ-EDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYS-FSNTILAVKLNRK 148 (161)
Q Consensus 72 ~dg-iriwd~~~~~~~~~~~~~~~-~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~-~~~~V~~v~~~~~ 148 (161)
.|| |++||+++ ..+. .+..+. ....+.+++|+|++..+++++.|+.|++||+ +++++..+. +...|.+++|+|+
T Consensus 139 ~d~~i~iwd~~~-~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~ 215 (383)
T 3ei3_B 139 IRGATTLRDFSG-SVIQ-VFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPR 215 (383)
T ss_dssp TTTEEEEEETTS-CEEE-EEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSS
T ss_pred CCCEEEEEECCC-CceE-EEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCC
Confidence 999 99999986 4443 333332 2235788999999888888889999999999 577888876 6789999999998
Q ss_pred ---EEEEEecc
Q psy505 149 ---KEEEEDEE 156 (161)
Q Consensus 149 ---~~vv~~~~ 156 (161)
.++.+..+
T Consensus 216 ~~~~l~s~~~d 226 (383)
T 3ei3_B 216 CDWLMATSSVD 226 (383)
T ss_dssp CTTEEEEEETT
T ss_pred CCCEEEEEeCC
Confidence 45665555
No 53
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.84 E-value=4.6e-21 Score=150.30 Aligned_cols=139 Identities=14% Similarity=0.157 Sum_probs=115.9
Q ss_pred CCceeEEeecCCC----ceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee-------eEEEecCCc-eEEEEe
Q psy505 13 NPNGICCLCVNSD----NCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA-------SLSVGTKSG-YRLFSL 80 (161)
Q Consensus 13 ~~~~v~~~~~~~d----~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~-------~lasgs~dg-iriwd~ 80 (161)
+...+.+++++|+ |.++++++. ||.|++||+.+++++..+.+|..+|.+++ +|++|+.|| |++||+
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~--dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~ 145 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGS--RGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 145 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEET--TCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecC--CCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEe
Confidence 4467889999888 778888776 99999999999999999999999999998 899999999 999999
Q ss_pred CCcCceeeEE---eecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEE----------------------
Q psy505 81 NSIDTLEQIY---ENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYS---------------------- 135 (161)
Q Consensus 81 ~~~~~~~~~~---~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~---------------------- 135 (161)
++++.. ..+ .+|.. .+.+++|+|++..+++++.|+.|++||+++++.+..+.
T Consensus 146 ~~~~~~-~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (366)
T 3k26_A 146 QTDTLV-AIFGGVEGHRD--EVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFP 222 (366)
T ss_dssp TTTEEE-EEECSTTSCSS--CEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCC
T ss_pred ecCeEE-EEecccccccC--ceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccC
Confidence 988755 344 35554 47889999998888888889999999999876543332
Q ss_pred -------ecCceEEEEECCcEEEEEecc
Q psy505 136 -------FSNTILAVKLNRKKEEEEDEE 156 (161)
Q Consensus 136 -------~~~~V~~v~~~~~~~vv~~~~ 156 (161)
+.+.|.+++|+++.+++...+
T Consensus 223 ~~~~~~~~~~~v~~~~~~~~~l~~~~~d 250 (366)
T 3k26_A 223 DFSTRDIHRNYVDCVRWLGDLILSKSCE 250 (366)
T ss_dssp SEEECSSCSSCCCEEEEETTEEEEECSS
T ss_pred ccccccCCcceEEEEEEcCCEEEEEecC
Confidence 678899999998888877655
No 54
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.84 E-value=1.4e-20 Score=159.42 Aligned_cols=140 Identities=11% Similarity=0.078 Sum_probs=109.0
Q ss_pred ceeEEeecCCC------ceEEEEcCCCCcceEEEEEcCCCCc-----------eeeeeccCccceeee-----eEEEecC
Q psy505 15 NGICCLCVNSD------NCYLAYPGSNSIGEVQIFDADNLHA-----------KTMIPAHDSPLAALA-----SLSVGTK 72 (161)
Q Consensus 15 ~~v~~~~~~~d------~~~la~~g~~~dg~v~iWd~~~~~~-----------~~~l~~H~~~V~~l~-----~lasgs~ 72 (161)
..|..++++|+ +.+||+++. ||+|+|||+.++++ ..++.+|..+|++++ .||+|+.
T Consensus 208 ~~V~~v~wsp~~~~~~~~~~LAs~s~--DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~ 285 (524)
T 2j04_B 208 GEVWDLKWHEGCHAPHLVGCLSFVSQ--EGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFK 285 (524)
T ss_dssp CSEEEEEECSSCCCSSSSCEEEEEET--TSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEET
T ss_pred CcEEEEEECCCCCCCCCCceEEEEec--CCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeC
Confidence 45888888886 578898776 99999999987643 247889999999998 8999999
Q ss_pred Cc-eEEEEeCCcCceeeEEeecCcceEEEEEeecCCe-EEEEecCCCCeEEEEecCCCCeEEEEE-ec--CceEEEEECC
Q psy505 73 SG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSL-VAVVSLSSPRKLTVCHFKRGSEICNYS-FS--NTILAVKLNR 147 (161)
Q Consensus 73 dg-iriwd~~~~~~~~~~~~~~~~~~~v~~~~fs~~~-~~~~s~~~d~~i~iWD~~~~~~i~~l~-~~--~~V~~v~~~~ 147 (161)
|| |+|||+++++.....+.+|...+..++.+|+|++ ..++|++.|++|+|||+++++++..+. +. ..|++|+|+|
T Consensus 286 DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp 365 (524)
T 2j04_B 286 NGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCP 365 (524)
T ss_dssp TSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEET
T ss_pred CCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCC
Confidence 99 9999998875443457788766444434788887 678888899999999999988776664 32 3589999999
Q ss_pred c--EEEEEecc
Q psy505 148 K--KEEEEDEE 156 (161)
Q Consensus 148 ~--~~vv~~~~ 156 (161)
+ .++....+
T Consensus 366 ~~~~l~s~~~d 376 (524)
T 2j04_B 366 QIYSYIYSDGA 376 (524)
T ss_dssp TTTEEEEECSS
T ss_pred CcCeEEEeCCC
Confidence 6 34444343
No 55
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.84 E-value=3.3e-21 Score=153.16 Aligned_cols=136 Identities=11% Similarity=0.125 Sum_probs=105.5
Q ss_pred eeEEeecCCCceEEEEcCCCCcceEEEEEcCCC--CceeeeeccCccceeee------eEEEecCCc-eEEEEeCCcC--
Q psy505 16 GICCLCVNSDNCYLAYPGSNSIGEVQIFDADNL--HAKTMIPAHDSPLAALA------SLSVGTKSG-YRLFSLNSID-- 84 (161)
Q Consensus 16 ~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~--~~~~~l~~H~~~V~~l~------~lasgs~dg-iriwd~~~~~-- 84 (161)
.|.+++++|||.++|+++. ||.|+|||+.++ +++..+.+|.++|.+++ +|++|+.|| |+|||+++++
T Consensus 13 ~v~~~~~s~~g~~l~~~~~--d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~ 90 (377)
T 3dwl_C 13 PSYEHAFNSQRTEFVTTTA--TNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTW 90 (377)
T ss_dssp CCSCCEECSSSSEEECCCS--SSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CC
T ss_pred cEEEEEECCCCCEEEEecC--CCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCce
Confidence 5888999999999998765 999999999998 78899999999999999 899999999 9999998876
Q ss_pred -ceeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCC---eEEEEE--ecCceEEEEECCc--EEEEEecc
Q psy505 85 -TLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGS---EICNYS--FSNTILAVKLNRK--KEEEEDEE 156 (161)
Q Consensus 85 -~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~---~i~~l~--~~~~V~~v~~~~~--~~vv~~~~ 156 (161)
+. ..+.+|.. .+.+++|+|++..+++++.|++|++||+++++ ++..+. |.+.|.+++|+|+ .+++...+
T Consensus 91 ~~~-~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d 167 (377)
T 3dwl_C 91 KQT-LVLLRLNR--AATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCAD 167 (377)
T ss_dssp CCE-EECCCCSS--CEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESS
T ss_pred eee-eEecccCC--ceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCC
Confidence 23 33445654 47788999998888888889999999999887 356665 6789999999997 46655554
No 56
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.84 E-value=8.6e-20 Score=145.42 Aligned_cols=132 Identities=15% Similarity=0.153 Sum_probs=114.0
Q ss_pred CCCCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeec---c---Cccceeee------eEEEecCC---c-
Q psy505 11 PPNPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPA---H---DSPLAALA------SLSVGTKS---G- 74 (161)
Q Consensus 11 ~~~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~---H---~~~V~~l~------~lasgs~d---g- 74 (161)
..+...+.+++++|++ ++++++. ||.|++||+++++++..+.+ | ..+|.+++ +|++|+.| |
T Consensus 183 ~~~~~~i~~~~~~~~~-~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~ 259 (397)
T 1sq9_A 183 MTPSQFATSVDISERG-LIATGFN--NGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGC 259 (397)
T ss_dssp SSSCCCCCEEEECTTS-EEEEECT--TSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEE
T ss_pred cCCCCCceEEEECCCc-eEEEEeC--CCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCce
Confidence 3455668899999999 8888665 99999999999999999999 9 99999998 89999999 9
Q ss_pred eEEEEeCCcCceeeEEee-------------cCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEE------
Q psy505 75 YRLFSLNSIDTLEQIYEN-------------SQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYS------ 135 (161)
Q Consensus 75 iriwd~~~~~~~~~~~~~-------------~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~------ 135 (161)
|++||+++++++ ..+.+ |.. .+.+++|+|++..+++++.|+.|+|||+++++++..+.
T Consensus 260 i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 336 (397)
T 1sq9_A 260 ITLYETEFGERI-GSLSVPTHSSQASLGEFAHSS--WVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI 336 (397)
T ss_dssp EEEEETTTCCEE-EEECBC--------CCBSBSS--CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGC
T ss_pred EEEEECCCCccc-ceeccCcccccccccccccCC--cEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcc
Confidence 999999998766 45555 654 47788999998888888889999999999999999887
Q ss_pred -e---------------cCceEEEEECCc
Q psy505 136 -F---------------SNTILAVKLNRK 148 (161)
Q Consensus 136 -~---------------~~~V~~v~~~~~ 148 (161)
+ ...|.+++|+|+
T Consensus 337 ~~~~~~~~g~~~~~~~~~~~v~~~~~~~~ 365 (397)
T 1sq9_A 337 EIEEDILAVDEHGDSLAEPGVFDVKFLKK 365 (397)
T ss_dssp SSGGGCCCBCTTSCBCSSCCEEEEEEECT
T ss_pred cchhhhhccccccccccCCceeEEEeccc
Confidence 4 688999999998
No 57
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.84 E-value=4.1e-19 Score=144.41 Aligned_cols=147 Identities=15% Similarity=0.212 Sum_probs=109.5
Q ss_pred ceEEecCCCCCCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee----eEEEecCCc-eEE
Q psy505 3 VLHTIRDTPPNPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA----SLSVGTKSG-YRL 77 (161)
Q Consensus 3 ~~~~~~~~~~~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~----~lasgs~dg-iri 77 (161)
+++++ ..+.+...|.+++|+|||.+||+++. ||+|+|||+.+++++..+.+|...+.+++ +|++|+.|+ +++
T Consensus 137 ~~~~~-~~~~~~~~V~sv~fspdg~~lasgs~--Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~ 213 (420)
T 4gga_A 137 ILQLL-QMEQPGEYISSVAWIKEGNYLAVGTS--SAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHH 213 (420)
T ss_dssp EEEEE-ECCSTTCCEEEEEECTTSSEEEEEET--TSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEE
T ss_pred EEEEE-EecCCCCcEEEEEECCCCCEEEEEEC--CCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeE
Confidence 44555 44556667999999999999999776 99999999999999999999999888877 555666655 666
Q ss_pred EEeCCcCceeeEE----------------------------------------------eecCcceEEEEEeecC---Ce
Q psy505 78 FSLNSIDTLEQIY----------------------------------------------ENSQEDVCIVERLFSS---SL 108 (161)
Q Consensus 78 wd~~~~~~~~~~~----------------------------------------------~~~~~~~~v~~~~fs~---~~ 108 (161)
||.+........+ ..|.. .|.+++|+| +.
T Consensus 214 ~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~--~V~~~~~~p~~~~~ 291 (420)
T 4gga_A 214 HDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG--AVKAVAWCPWQSNV 291 (420)
T ss_dssp EETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSS--CEEEEEECTTCTTE
T ss_pred eeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCC--ceeeeeeCCCcccE
Confidence 6544322211111 22222 356677775 55
Q ss_pred EEEEecCCCCeEEEEecCCCCeEEEEEecCceEEEEECCc--EEEEEe
Q psy505 109 VAVVSLSSPRKLTVCHFKRGSEICNYSFSNTILAVKLNRK--KEEEED 154 (161)
Q Consensus 109 ~~~~s~~~d~~i~iWD~~~~~~i~~l~~~~~V~~v~~~~~--~~vv~~ 154 (161)
+++++|+.|++|++||+++++++..+.....|.++.|+|+ .++++.
T Consensus 292 la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~s 339 (420)
T 4gga_A 292 LATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGH 339 (420)
T ss_dssp EEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEE
T ss_pred EEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEE
Confidence 6677788899999999999999999988899999999886 555553
No 58
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.84 E-value=7.8e-20 Score=141.20 Aligned_cols=140 Identities=11% Similarity=0.134 Sum_probs=110.1
Q ss_pred CCceeEEeecCC--CceEEEEcCCCCcceEEEEEcCCC---------CceeeeeccCccceeee--------eEEEecCC
Q psy505 13 NPNGICCLCVNS--DNCYLAYPGSNSIGEVQIFDADNL---------HAKTMIPAHDSPLAALA--------SLSVGTKS 73 (161)
Q Consensus 13 ~~~~v~~~~~~~--d~~~la~~g~~~dg~v~iWd~~~~---------~~~~~l~~H~~~V~~l~--------~lasgs~d 73 (161)
+...|.+++++| |+.++++++. ||+|++||+.++ +++..+.+|.++|.+++ +|++|+.|
T Consensus 56 ~~~~v~~~~~~~~~d~~~l~s~~~--dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 133 (351)
T 3f3f_A 56 HDSSIVAIDWASPEYGRIIASASY--DKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGND 133 (351)
T ss_dssp CSSCEEEEEECCGGGCSEEEEEET--TSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred CCCcEEEEEEcCCCCCCEEEEEcC--CCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCC
Confidence 445689999998 6889998776 999999999987 45788999999999997 69999999
Q ss_pred c-eEEEEeCCcCcee-----------------------------------------------------------eEEeec
Q psy505 74 G-YRLFSLNSIDTLE-----------------------------------------------------------QIYENS 93 (161)
Q Consensus 74 g-iriwd~~~~~~~~-----------------------------------------------------------~~~~~~ 93 (161)
| |++||+++++.+. ..+.+|
T Consensus 134 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h 213 (351)
T 3f3f_A 134 GILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGH 213 (351)
T ss_dssp CEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCC
T ss_pred CcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCC
Confidence 9 9999987764221 122234
Q ss_pred CcceEEEEEeecCCe----EEEEecCCCCeEEEEecCCC-----------------------------------------
Q psy505 94 QEDVCIVERLFSSSL----VAVVSLSSPRKLTVCHFKRG----------------------------------------- 128 (161)
Q Consensus 94 ~~~~~v~~~~fs~~~----~~~~s~~~d~~i~iWD~~~~----------------------------------------- 128 (161)
.. .+.+++|+|++ ..+++++.|++|++||++++
T Consensus 214 ~~--~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (351)
T 3f3f_A 214 KS--LIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQ 291 (351)
T ss_dssp CS--CEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------C
T ss_pred Cc--ceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeec
Confidence 43 47788999997 77888889999999999875
Q ss_pred -----CeEEEEE-ecCceEEEEECCc--EEEEEecc
Q psy505 129 -----SEICNYS-FSNTILAVKLNRK--KEEEEDEE 156 (161)
Q Consensus 129 -----~~i~~l~-~~~~V~~v~~~~~--~~vv~~~~ 156 (161)
+++..+. |.+.|.+++|+|+ .++.+..|
T Consensus 292 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 327 (351)
T 3f3f_A 292 SNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDD 327 (351)
T ss_dssp CSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETT
T ss_pred ccccccEEEEEecccccEEEEEEcCCCCEEEEecCC
Confidence 4444554 5679999999997 46666554
No 59
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.84 E-value=4.1e-20 Score=159.27 Aligned_cols=140 Identities=9% Similarity=0.092 Sum_probs=115.1
Q ss_pred CCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeee----eccCccceeee--------eEEEecCCc-eEEEE
Q psy505 13 NPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMI----PAHDSPLAALA--------SLSVGTKSG-YRLFS 79 (161)
Q Consensus 13 ~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l----~~H~~~V~~l~--------~lasgs~dg-iriwd 79 (161)
|...|.+++++|++.++++++. ||+|+|||+.... ...+ .+|...|++++ +|++|+.|| ||+||
T Consensus 471 h~~~v~~~~~s~~~~~l~s~s~--D~~i~iwd~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd 547 (694)
T 3dm0_A 471 HTKDVLSVAFSLDNRQIVSASR--DRTIKLWNTLGEC-KYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWN 547 (694)
T ss_dssp CSSCEEEEEECTTSSCEEEEET--TSCEEEECTTSCE-EEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEE
T ss_pred CCCCEEEEEEeCCCCEEEEEeC--CCEEEEEECCCCc-ceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEE
Confidence 4456999999999999998776 9999999987543 3333 57999999998 599999999 99999
Q ss_pred eCCcCceeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEEecCceEEEEECCcE--EEEEeccc
Q psy505 80 LNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYSFSNTILAVKLNRKK--EEEEDEEE 157 (161)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~~~~V~~v~~~~~~--~vv~~~~~ 157 (161)
+++++.. ..+.+|.+. |.+++|+|++..+++++.|++|+|||+++++++..+.....|.++.|+|++ ++...++.
T Consensus 548 ~~~~~~~-~~~~~h~~~--v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~ 624 (694)
T 3dm0_A 548 LSNCKLR-STLAGHTGY--VSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAATEHG 624 (694)
T ss_dssp TTTCCEE-EEECCCSSC--EEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEETTE
T ss_pred CCCCcEE-EEEcCCCCC--EEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEcCCC
Confidence 9987654 567788754 778899999999999999999999999999998888888899999999984 44444443
Q ss_pred e
Q psy505 158 E 158 (161)
Q Consensus 158 ~ 158 (161)
|
T Consensus 625 i 625 (694)
T 3dm0_A 625 I 625 (694)
T ss_dssp E
T ss_pred E
Confidence 3
No 60
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.84 E-value=1.7e-19 Score=147.33 Aligned_cols=147 Identities=10% Similarity=0.199 Sum_probs=120.7
Q ss_pred ceEEecCCCCCCceeEEeecC--CCceEEEEcCCCCcceEEEEEcCCCCc-----------------------eeeeecc
Q psy505 3 VLHTIRDTPPNPNGICCLCVN--SDNCYLAYPGSNSIGEVQIFDADNLHA-----------------------KTMIPAH 57 (161)
Q Consensus 3 ~~~~~~~~~~~~~~v~~~~~~--~d~~~la~~g~~~dg~v~iWd~~~~~~-----------------------~~~l~~H 57 (161)
+++++ ..+.. .|.+++++ |++.++++++. ||+|++||+.+++. +..+.+|
T Consensus 195 ~~~~~-~~h~~--~v~~l~~~~~~~~~~l~s~s~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (464)
T 3v7d_B 195 CTHVF-EGHNS--TVRCLDIVEYKNIKYIVTGSR--DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH 269 (464)
T ss_dssp EEEEE-CCCSS--CEEEEEEEESSSCEEEEEEET--TSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCC
T ss_pred EEEEE-CCCCC--ccEEEEEecCCCCCEEEEEcC--CCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCc
Confidence 45566 44444 45555554 78889998776 99999999998763 5578899
Q ss_pred Cccceeee----eEEEecCCc-eEEEEeCCcCceeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEE
Q psy505 58 DSPLAALA----SLSVGTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEIC 132 (161)
Q Consensus 58 ~~~V~~l~----~lasgs~dg-iriwd~~~~~~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~ 132 (161)
...|.++. ++++|+.|| |++||+++++++ ..+.+|.. .+.+++|+|++..+++++.|++|++||+++++++.
T Consensus 270 ~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~-~~~~~~~~--~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~ 346 (464)
T 3v7d_B 270 MASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCL-YILSGHTD--RIYSTIYDHERKRCISASMDTTIRIWDLENGELMY 346 (464)
T ss_dssp SSCEEEEEEETTEEEEEETTSCEEEEETTTTEEE-EEECCCSS--CEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEE
T ss_pred cceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE-EEecCCCC--CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE
Confidence 99999998 999999999 999999998765 45567765 47788999988888888899999999999999999
Q ss_pred EEE-ecCceEEEEECCcEEEEEeccc
Q psy505 133 NYS-FSNTILAVKLNRKKEEEEDEEE 157 (161)
Q Consensus 133 ~l~-~~~~V~~v~~~~~~~vv~~~~~ 157 (161)
.+. |...|.++.|+++.++.+..+.
T Consensus 347 ~~~~h~~~v~~~~~~~~~l~s~s~dg 372 (464)
T 3v7d_B 347 TLQGHTALVGLLRLSDKFLVSAAADG 372 (464)
T ss_dssp EECCCSSCEEEEEECSSEEEEEETTS
T ss_pred EEeCCCCcEEEEEEcCCEEEEEeCCC
Confidence 886 6789999999999999888763
No 61
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.84 E-value=2.4e-20 Score=149.56 Aligned_cols=142 Identities=15% Similarity=0.099 Sum_probs=105.0
Q ss_pred CCceeEEeecCCCceEEEEcCCCC----cceEEEEEcCCCCce----eeeeccCccceeee-----eEEEecCCc-eEEE
Q psy505 13 NPNGICCLCVNSDNCYLAYPGSNS----IGEVQIFDADNLHAK----TMIPAHDSPLAALA-----SLSVGTKSG-YRLF 78 (161)
Q Consensus 13 ~~~~v~~~~~~~d~~~la~~g~~~----dg~v~iWd~~~~~~~----~~l~~H~~~V~~l~-----~lasgs~dg-iriw 78 (161)
+...|.+++|+|||.+||+++... ||.|++|+..++.+. ....+|...|.+++ .+++++.|| ||||
T Consensus 41 H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lW 120 (357)
T 4g56_B 41 MEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELW 120 (357)
T ss_dssp CCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC
T ss_pred ccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEe
Confidence 556799999999999999976410 688999999887643 33467999999999 666788899 9999
Q ss_pred EeCCcCceee---EEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEE-ecCceEEEEECCc---EEE
Q psy505 79 SLNSIDTLEQ---IYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYS-FSNTILAVKLNRK---KEE 151 (161)
Q Consensus 79 d~~~~~~~~~---~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~-~~~~V~~v~~~~~---~~v 151 (161)
|+++++.... ...+|.. .|.+++|+|++..+++++.|++|+|||+++++++..+. |.+.|.+++|+|+ .++
T Consensus 121 d~~~~~~~~~~~~~~~~h~~--~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~ 198 (357)
T 4g56_B 121 EILEKESLLVNKFAKYEHDD--IVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFL 198 (357)
T ss_dssp --------CCCCEEECCCSS--CEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEE
T ss_pred eccccceeEEEeeccCCCCC--CEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceee
Confidence 9988764321 1235654 47889999999889999899999999999999999887 6789999999886 355
Q ss_pred EEecc
Q psy505 152 EEDEE 156 (161)
Q Consensus 152 v~~~~ 156 (161)
.+..+
T Consensus 199 s~~~d 203 (357)
T 4g56_B 199 SCGED 203 (357)
T ss_dssp EEETT
T ss_pred eeccC
Confidence 55544
No 62
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.84 E-value=2.2e-20 Score=148.08 Aligned_cols=131 Identities=12% Similarity=0.191 Sum_probs=102.7
Q ss_pred CceeEEeecCC--CceEEEEcCCCCcceEEEEEcCCCCceeeeec-cCccceeee------eEEEecCCc-eEEEEeCCc
Q psy505 14 PNGICCLCVNS--DNCYLAYPGSNSIGEVQIFDADNLHAKTMIPA-HDSPLAALA------SLSVGTKSG-YRLFSLNSI 83 (161)
Q Consensus 14 ~~~v~~~~~~~--d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~-H~~~V~~l~------~lasgs~dg-iriwd~~~~ 83 (161)
...|.+++++| ++.++++++. ||+|++||+++++++..+.. |..+|.+++ +||+|+.|| |+|||++++
T Consensus 125 ~~~v~~~~~~~~~~~~~l~s~s~--dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~ 202 (343)
T 3lrv_A 125 ANEIIYMYGHNEVNTEYFIWADN--RGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSP 202 (343)
T ss_dssp SSCEEEEECCC---CCEEEEEET--TCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCT
T ss_pred CCCEEEEEcCCCCCCCEEEEEeC--CCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC
Confidence 34699999999 9999998776 99999999999998777754 556899998 899999999 999999998
Q ss_pred CceeeEEee-cCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEE-e---cCce--EEEEECCcE
Q psy505 84 DTLEQIYEN-SQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYS-F---SNTI--LAVKLNRKK 149 (161)
Q Consensus 84 ~~~~~~~~~-~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~-~---~~~V--~~v~~~~~~ 149 (161)
+.....+.+ |.. .|.+++|+|++..++++++ ++|+|||+++++++..+. + ...+ .+++|+|++
T Consensus 203 ~~~~~~~~~~h~~--~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 272 (343)
T 3lrv_A 203 DQASSRFPVDEEA--KIKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSG 272 (343)
T ss_dssp TSCCEECCCCTTS--CEEEEEECTTSSEEEEEES-SBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTS
T ss_pred CCCccEEeccCCC--CEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcceeecccccccccccceEEEECCCC
Confidence 765234555 765 4788999999988888874 499999999988764433 1 1223 469999974
No 63
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.83 E-value=4.5e-20 Score=150.68 Aligned_cols=145 Identities=15% Similarity=0.127 Sum_probs=116.5
Q ss_pred cceEEecCCCCCCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee----eEEEecCCc-eE
Q psy505 2 KVLHTIRDTPPNPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA----SLSVGTKSG-YR 76 (161)
Q Consensus 2 ~~~~~~~~~~~~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~----~lasgs~dg-ir 76 (161)
+++.++ .. +...+.+++++|++.++++++. ||+|++||+.+++++..+++|..+|.+++ +|++|+.|| |+
T Consensus 301 ~~~~~~-~~--~~~~v~~~~~~~~~~~l~sg~~--dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~ 375 (464)
T 3v7d_B 301 KCLYIL-SG--HTDRIYSTIYDHERKRCISASM--DTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIR 375 (464)
T ss_dssp EEEEEE-CC--CSSCEEEEEEETTTTEEEEEET--TSCEEEEETTTTEEEEEECCCSSCEEEEEECSSEEEEEETTSEEE
T ss_pred cEEEEe-cC--CCCCEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCcEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEE
Confidence 345555 33 4456899999999999998776 99999999999999999999999999999 999999999 99
Q ss_pred EEEeCCcCceeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEE--EecCceEEEEECCcEEEEEe
Q psy505 77 LFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNY--SFSNTILAVKLNRKKEEEED 154 (161)
Q Consensus 77 iwd~~~~~~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l--~~~~~V~~v~~~~~~~vv~~ 154 (161)
+||++++...... .+... +..++|+|++..+++++ |++|+|||+++++++..+ .+...|.+++|+++.++++.
T Consensus 376 vwd~~~~~~~~~~--~~~~~--~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~~~~l~~~~ 450 (464)
T 3v7d_B 376 GWDANDYSRKFSY--HHTNL--SAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAV 450 (464)
T ss_dssp EEETTTCCEEEEE--ECTTC--CCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEETTEEEEEE
T ss_pred EEECCCCceeeee--cCCCC--ccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEecCCEEEEEE
Confidence 9999887643222 23333 33456777777777775 789999999999998763 35789999999999888876
Q ss_pred cc
Q psy505 155 EE 156 (161)
Q Consensus 155 ~~ 156 (161)
.+
T Consensus 451 ~~ 452 (464)
T 3v7d_B 451 EK 452 (464)
T ss_dssp EE
T ss_pred Ee
Confidence 53
No 64
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.83 E-value=5.7e-20 Score=148.67 Aligned_cols=125 Identities=10% Similarity=0.025 Sum_probs=86.0
Q ss_pred CceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceee---e------e------------EEEecCCc-eEEEEeCC
Q psy505 25 DNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAAL---A------S------------LSVGTKSG-YRLFSLNS 82 (161)
Q Consensus 25 d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l---~------~------------lasgs~dg-iriwd~~~ 82 (161)
|+..||+++. |++|||||+.+|+++++|.+|...+.++ + + +++|+.|+ ||+||..+
T Consensus 192 ~~~~LaSgS~--D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~t 269 (356)
T 2w18_A 192 MQEALLGTTI--MNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKT 269 (356)
T ss_dssp STTEEEEEET--TSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTT
T ss_pred CCceEEEecC--CCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCC
Confidence 5567777665 9999999999999999999876644433 2 2 47899999 99999999
Q ss_pred cCceeeEE-----eecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEE-ecCceE-EEEECCc--EEEEE
Q psy505 83 IDTLEQIY-----ENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYS-FSNTIL-AVKLNRK--KEEEE 153 (161)
Q Consensus 83 ~~~~~~~~-----~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~-~~~~V~-~v~~~~~--~~vv~ 153 (161)
|+.+. .+ .||... ..+..++ +..+++++.|++|+|||+++|+++.+|. |.+.|. .++|+|| .|+..
T Consensus 270 gk~l~-v~~~~~p~Gh~~~--~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSG 344 (356)
T 2w18_A 270 TLSVG-VMLYCLPPGQAGR--FLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAG 344 (356)
T ss_dssp TEEEE-EEEECCCTTCCCC--EEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEE
T ss_pred CEEEE-EEEeeccCCCcce--eEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEE
Confidence 87553 32 355432 3344444 3356777789999999999999999997 556555 5899998 45555
Q ss_pred ecc
Q psy505 154 DEE 156 (161)
Q Consensus 154 ~~~ 156 (161)
..|
T Consensus 345 S~D 347 (356)
T 2w18_A 345 QKD 347 (356)
T ss_dssp CTT
T ss_pred ECC
Confidence 544
No 65
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.83 E-value=4.3e-19 Score=138.95 Aligned_cols=141 Identities=7% Similarity=0.019 Sum_probs=113.6
Q ss_pred CCCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee------eEEEecCCc-eEEEEeCCcC
Q psy505 12 PNPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA------SLSVGTKSG-YRLFSLNSID 84 (161)
Q Consensus 12 ~~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~------~lasgs~dg-iriwd~~~~~ 84 (161)
.+...|.+++++|+|.++++++. ||.|++||+.+++.+..+.+|.++|.+++ +|++++.|| |++||+++++
T Consensus 30 ~h~~~v~~~~~s~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 107 (369)
T 3zwl_B 30 GHERPLTQVKYNKEGDLLFSCSK--DSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQ 107 (369)
T ss_dssp CCSSCEEEEEECTTSCEEEEEES--SSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred EeeceEEEEEEcCCCCEEEEEeC--CCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 45566999999999999999776 99999999999999999999999999999 899999999 9999998876
Q ss_pred ceeeEEeecCcc----------------------------------------------------------eEEEEEeecC
Q psy505 85 TLEQIYENSQED----------------------------------------------------------VCIVERLFSS 106 (161)
Q Consensus 85 ~~~~~~~~~~~~----------------------------------------------------------~~v~~~~fs~ 106 (161)
.+..+ . +... ..+.+++|+|
T Consensus 108 ~~~~~-~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (369)
T 3zwl_B 108 CVATW-K-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST 185 (369)
T ss_dssp EEEEE-E-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG
T ss_pred EEEEe-e-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcC
Confidence 54322 2 1100 0455667777
Q ss_pred CeEEEEecCCCCeEEEEecCC-CCeEEEEE-ecCceEEEEECCc--EEEEEecc
Q psy505 107 SLVAVVSLSSPRKLTVCHFKR-GSEICNYS-FSNTILAVKLNRK--KEEEEDEE 156 (161)
Q Consensus 107 ~~~~~~s~~~d~~i~iWD~~~-~~~i~~l~-~~~~V~~v~~~~~--~~vv~~~~ 156 (161)
++..+++++.|+.|++||+++ ++.+..+. +...|.+++|+|+ .+++...+
T Consensus 186 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 239 (369)
T 3zwl_B 186 KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRD 239 (369)
T ss_dssp GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCC
Confidence 777777777889999999998 67777776 6789999999997 45555544
No 66
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.83 E-value=1.6e-19 Score=146.32 Aligned_cols=145 Identities=11% Similarity=-0.016 Sum_probs=107.6
Q ss_pred CCceeEEeecCC--------CceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee-------eEEEecCCc-eE
Q psy505 13 NPNGICCLCVNS--------DNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA-------SLSVGTKSG-YR 76 (161)
Q Consensus 13 ~~~~v~~~~~~~--------d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~-------~lasgs~dg-ir 76 (161)
|...|.+++|+| ||.+||++|. |++|||||+.++.++..+.+|.++|.+++ +|++|+.|| ||
T Consensus 135 H~~~v~~v~~~p~~~~~~~~d~~~las~s~--D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~ 212 (393)
T 4gq1_A 135 HHNFVNDIDIADVYSADNRLAEQVIASVGD--DCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIR 212 (393)
T ss_dssp CSSCEEEEEEEEEECTTCSEEEEEEEEEET--TSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEE
T ss_pred CCCceEEEEEccccccccCCCCCEEEEEEC--CCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEE
Confidence 445688888877 8999999776 99999999999998889999999999998 799999999 99
Q ss_pred EEEeCCcCceeeEE------------------------eec----------------------CcceEEEEE--------
Q psy505 77 LFSLNSIDTLEQIY------------------------ENS----------------------QEDVCIVER-------- 102 (161)
Q Consensus 77 iwd~~~~~~~~~~~------------------------~~~----------------------~~~~~v~~~-------- 102 (161)
+||+++++...... .+| .+.+.+..+
T Consensus 213 ~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~ 292 (393)
T 4gq1_A 213 IFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNE 292 (393)
T ss_dssp EEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------
T ss_pred EEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCce
Confidence 99998764321100 011 011111111
Q ss_pred -----------eecC--------------------CeEEEEecCCCCeEEEEecCCCCeEEEE-EecCceEEEEECCc--
Q psy505 103 -----------LFSS--------------------SLVAVVSLSSPRKLTVCHFKRGSEICNY-SFSNTILAVKLNRK-- 148 (161)
Q Consensus 103 -----------~fs~--------------------~~~~~~s~~~d~~i~iWD~~~~~~i~~l-~~~~~V~~v~~~~~-- 148 (161)
.++| +...+++++.|++|+|||+.+++++..+ .+..+|.+++|+||
T Consensus 293 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~ 372 (393)
T 4gq1_A 293 ISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGS 372 (393)
T ss_dssp -----------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSS
T ss_pred EeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCC
Confidence 1111 3446778888999999999999887665 47889999999998
Q ss_pred EEEEEecccee
Q psy505 149 KEEEEDEEEEK 159 (161)
Q Consensus 149 ~~vv~~~~~~~ 159 (161)
.|+++.++.+.
T Consensus 373 ~LA~as~~Gv~ 383 (393)
T 4gq1_A 373 HLAIATEGSVL 383 (393)
T ss_dssp EEEEEESSEEE
T ss_pred EEEEEeCCCeE
Confidence 78888877653
No 67
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.83 E-value=2.1e-19 Score=145.69 Aligned_cols=135 Identities=19% Similarity=0.231 Sum_probs=108.5
Q ss_pred ceeEEee--cCCCceEEEEcCCCCcceEEEEEcCCCCceeeeec--cCccceeee------eEEEecCCc-eEEEEeCCc
Q psy505 15 NGICCLC--VNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPA--HDSPLAALA------SLSVGTKSG-YRLFSLNSI 83 (161)
Q Consensus 15 ~~v~~~~--~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~--H~~~V~~l~------~lasgs~dg-iriwd~~~~ 83 (161)
..+.++. ++|++.++++++. ||.|++||+++++++..+.+ |.++|++++ +|++|+.|| |++||++++
T Consensus 169 ~~~~~~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 246 (437)
T 3gre_A 169 EYAVRMRAFVNEEKSLLVALTN--LSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN 246 (437)
T ss_dssp CCEEEEEEEECSSCEEEEEEET--TSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT
T ss_pred cCceEEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc
Confidence 3455555 5688999998776 99999999999999999998 899999998 899999999 999999997
Q ss_pred CceeeEEeecCcceEEEEE----eecCCeEEEEecCCCCeEEEEecCCCCeEEEEE------------------------
Q psy505 84 DTLEQIYENSQEDVCIVER----LFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYS------------------------ 135 (161)
Q Consensus 84 ~~~~~~~~~~~~~~~v~~~----~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~------------------------ 135 (161)
+++..+..+|. ..+.++ .|+|++..+++++.|++|+|||+++++++..+.
T Consensus 247 ~~~~~~~~~~~--~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 324 (437)
T 3gre_A 247 VLIRSWSFGDH--APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFC 324 (437)
T ss_dssp EEEEEEBCTTC--EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCC
T ss_pred cEEEEEecCCC--CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceec
Confidence 76533222443 357777 566789899999999999999999999998886
Q ss_pred ---ecCceEEEEECCcEEEEE
Q psy505 136 ---FSNTILAVKLNRKKEEEE 153 (161)
Q Consensus 136 ---~~~~V~~v~~~~~~~vv~ 153 (161)
+...|.+++|++...++.
T Consensus 325 ~~~~~~~v~~l~~~~~~~l~s 345 (437)
T 3gre_A 325 GIRSLNALSTISVSNDKILLT 345 (437)
T ss_dssp CCCSGGGGCCEEEETTEEEEE
T ss_pred ccccCCceEEEEECCceEEEe
Confidence 344588888886644333
No 68
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.83 E-value=8.5e-19 Score=139.86 Aligned_cols=139 Identities=14% Similarity=0.130 Sum_probs=112.6
Q ss_pred CCCCceeEEeecCC-CceEEEEcCCCCcceEEEEEcCCCCceeeeecc---Cccceeee------eEEEecCCc-eEEEE
Q psy505 11 PPNPNGICCLCVNS-DNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAH---DSPLAALA------SLSVGTKSG-YRLFS 79 (161)
Q Consensus 11 ~~~~~~v~~~~~~~-d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H---~~~V~~l~------~lasgs~dg-iriwd 79 (161)
..+...|.+++++| ++.++++++. ||.|++||+.+ +.+..+..| ...|.+++ +|++|+.|| |++||
T Consensus 115 ~~h~~~v~~~~~~~~~~~~l~s~~~--d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d 191 (383)
T 3ei3_B 115 MGPGDAITGMKFNQFNTNQLFVSSI--RGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLG 191 (383)
T ss_dssp CSTTCBEEEEEEETTEEEEEEEEET--TTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEE
T ss_pred CCcCCceeEEEeCCCCCCEEEEEeC--CCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEE
Confidence 34667899999999 7788888765 99999999995 666666554 48899998 899999999 99999
Q ss_pred eCCcCceeeEEeecCcceEEEEEeecCCeE-EEEecCCCCeEEEEecCC----CCeEEEEEecCceEEEEECC-c--EEE
Q psy505 80 LNSIDTLEQIYENSQEDVCIVERLFSSSLV-AVVSLSSPRKLTVCHFKR----GSEICNYSFSNTILAVKLNR-K--KEE 151 (161)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~v~~~~fs~~~~-~~~s~~~d~~i~iWD~~~----~~~i~~l~~~~~V~~v~~~~-~--~~v 151 (161)
++ ++++ ..+.+|.. .+.+++|+|++. .+++++.|++|++||+++ ++++..+.+...|.+++|+| + .++
T Consensus 192 ~~-~~~~-~~~~~h~~--~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~ 267 (383)
T 3ei3_B 192 LD-GHEI-FKEKLHKA--KVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLL 267 (383)
T ss_dssp TT-SCEE-EEEECSSS--CEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEE
T ss_pred CC-CCEE-EEeccCCC--cEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEE
Confidence 94 5555 45667765 477889999886 677777899999999998 77888888899999999999 5 566
Q ss_pred EEecc
Q psy505 152 EEDEE 156 (161)
Q Consensus 152 v~~~~ 156 (161)
+...+
T Consensus 268 ~~~~d 272 (383)
T 3ei3_B 268 TTDQR 272 (383)
T ss_dssp EEESS
T ss_pred EEcCC
Confidence 55544
No 69
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.83 E-value=1.8e-19 Score=145.23 Aligned_cols=139 Identities=11% Similarity=0.061 Sum_probs=113.2
Q ss_pred CCceeEEeecCCCc-eEEEEcCCCCcceEEEEEcCCCCceeee--eccCccceeee------eEEEecCCc-eEEEEeCC
Q psy505 13 NPNGICCLCVNSDN-CYLAYPGSNSIGEVQIFDADNLHAKTMI--PAHDSPLAALA------SLSVGTKSG-YRLFSLNS 82 (161)
Q Consensus 13 ~~~~v~~~~~~~d~-~~la~~g~~~dg~v~iWd~~~~~~~~~l--~~H~~~V~~l~------~lasgs~dg-iriwd~~~ 82 (161)
+...|.+++++|++ .++++++. ||+|++||+.+++++..+ .+|.+.|.+++ +|++|+.|| |++||+++
T Consensus 130 h~~~v~~~~~~p~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 207 (402)
T 2aq5_A 130 HTKRVGIVAWHPTAQNVLLSAGC--DNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRK 207 (402)
T ss_dssp CSSCEEEEEECSSBTTEEEEEET--TSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTT
T ss_pred CCCeEEEEEECcCCCCEEEEEcC--CCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCC
Confidence 44568999999998 58887665 999999999999999999 89999999999 899999999 99999999
Q ss_pred cCceeeEEeecCcceEEEEEeecCCeEEEEec---CCCCeEEEEecCCCCe-EEEE--EecCceEEEEECCc--EEEEEe
Q psy505 83 IDTLEQIYENSQEDVCIVERLFSSSLVAVVSL---SSPRKLTVCHFKRGSE-ICNY--SFSNTILAVKLNRK--KEEEED 154 (161)
Q Consensus 83 ~~~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~---~~d~~i~iWD~~~~~~-i~~l--~~~~~V~~v~~~~~--~~vv~~ 154 (161)
++.+..+..+|.+. .+..+.|+|++..++++ +.|+.|++||+++++. +... .+...|.++.|+|+ .++++.
T Consensus 208 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g 286 (402)
T 2aq5_A 208 GTVVAEKDRPHEGT-RPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCG 286 (402)
T ss_dssp TEEEEEEECSSCSS-SCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEE
T ss_pred CceeeeeccCCCCC-cceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEE
Confidence 87664332566532 35678899999988887 7899999999998765 3333 35678999999997 455554
No 70
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.82 E-value=6.6e-20 Score=148.21 Aligned_cols=143 Identities=12% Similarity=0.102 Sum_probs=112.7
Q ss_pred CCceeEEeecCCCc-eEEEEcCCCCcceEEEEEcCCCCc----eeeeeccCc------------cceeee------eEEE
Q psy505 13 NPNGICCLCVNSDN-CYLAYPGSNSIGEVQIFDADNLHA----KTMIPAHDS------------PLAALA------SLSV 69 (161)
Q Consensus 13 ~~~~v~~~~~~~d~-~~la~~g~~~dg~v~iWd~~~~~~----~~~l~~H~~------------~V~~l~------~las 69 (161)
+...|.+++++|++ .++++++. ||+|++||+++++. +..+.+|.+ +|.+++ +|++
T Consensus 225 ~~~~v~~~~~~p~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 302 (447)
T 3dw8_B 225 LTEVITAAEFHPNSCNTFVYSSS--KGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMT 302 (447)
T ss_dssp CCCCEEEEEECSSCTTEEEEEET--TSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEE
T ss_pred cCcceEEEEECCCCCcEEEEEeC--CCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEE
Confidence 45569999999998 88888776 99999999999987 789999987 899998 8899
Q ss_pred ecCCc-eEEEEeCC-cCceeeEEeecCcceE-------------EEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEE
Q psy505 70 GTKSG-YRLFSLNS-IDTLEQIYENSQEDVC-------------IVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNY 134 (161)
Q Consensus 70 gs~dg-iriwd~~~-~~~~~~~~~~~~~~~~-------------v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l 134 (161)
|+. | |+|||+++ ++++ ..+.+|..... +..++|+|++..+++++.|+.|+|||+++++.+...
T Consensus 303 ~~~-~~v~iwd~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~ 380 (447)
T 3dw8_B 303 RDY-LSVKVWDLNMENRPV-ETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLE 380 (447)
T ss_dssp EES-SEEEEEETTCCSSCS-CCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEE
T ss_pred eeC-CeEEEEeCCCCcccc-ceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeee
Confidence 999 8 99999987 6655 45666652111 223789999988899999999999999999876421
Q ss_pred ---------------------------------EecCceEEEEECCc--EEEEEecccee
Q psy505 135 ---------------------------------SFSNTILAVKLNRK--KEEEEDEEEEK 159 (161)
Q Consensus 135 ---------------------------------~~~~~V~~v~~~~~--~~vv~~~~~~~ 159 (161)
.+...|..++|+|+ .++++..+.++
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~~~ 440 (447)
T 3dw8_B 381 ASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNNLY 440 (447)
T ss_dssp CCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSCEE
T ss_pred ecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecceee
Confidence 23457899999997 67777666654
No 71
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.82 E-value=3e-19 Score=139.67 Aligned_cols=142 Identities=13% Similarity=0.172 Sum_probs=115.0
Q ss_pred CCceeEEeecCCC---ceEEEEcCCCCcceEEEEEcCCCC-ceeeeeccCccceeee------------eEEEecCCc-e
Q psy505 13 NPNGICCLCVNSD---NCYLAYPGSNSIGEVQIFDADNLH-AKTMIPAHDSPLAALA------------SLSVGTKSG-Y 75 (161)
Q Consensus 13 ~~~~v~~~~~~~d---~~~la~~g~~~dg~v~iWd~~~~~-~~~~l~~H~~~V~~l~------------~lasgs~dg-i 75 (161)
+...|.+++++|+ |.++++++. ||.|++||+.+++ ++..+.+|.++|.++. +|++|+.|| |
T Consensus 64 ~~~~v~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i 141 (357)
T 3i2n_A 64 KAKPIKCGTFGATSLQQRYLATGDF--GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTV 141 (357)
T ss_dssp ESSCEEEEECTTCCTTTCCEEEEET--TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCE
T ss_pred ccCcEEEEEEcCCCCCCceEEEecC--CCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeE
Confidence 4557899999998 688988776 9999999999988 8999999999999992 899999999 9
Q ss_pred EEEEeCCcCceeeEEeecCc--ceEEEEEe----ecCCeEEEEecCCCCeEEEEecCCCCeEEEEEecCceEEEEECC--
Q psy505 76 RLFSLNSIDTLEQIYENSQE--DVCIVERL----FSSSLVAVVSLSSPRKLTVCHFKRGSEICNYSFSNTILAVKLNR-- 147 (161)
Q Consensus 76 riwd~~~~~~~~~~~~~~~~--~~~v~~~~----fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~~~~V~~v~~~~-- 147 (161)
++||+++++.....+..|.+ ...+.++. |+|++..+++++.|+.|++||+++++++....+...|.+++|+|
T Consensus 142 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~ 221 (357)
T 3i2n_A 142 KVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKD 221 (357)
T ss_dssp EEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSS
T ss_pred EEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCC
Confidence 99999987633345544432 22456666 78888888888889999999999999877777889999999998
Q ss_pred ---cEEEEEecc
Q psy505 148 ---KKEEEEDEE 156 (161)
Q Consensus 148 ---~~~vv~~~~ 156 (161)
+.+++...+
T Consensus 222 ~~~~~l~~~~~d 233 (357)
T 3i2n_A 222 ISMNKLVATSLE 233 (357)
T ss_dssp SSCCEEEEEEST
T ss_pred CCCCEEEEECCC
Confidence 356666544
No 72
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.82 E-value=6.1e-19 Score=137.32 Aligned_cols=137 Identities=14% Similarity=0.124 Sum_probs=107.5
Q ss_pred CCceeEEeecCC--CceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee------eEEEecCCc-eEEEEeCCc
Q psy505 13 NPNGICCLCVNS--DNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA------SLSVGTKSG-YRLFSLNSI 83 (161)
Q Consensus 13 ~~~~v~~~~~~~--d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~------~lasgs~dg-iriwd~~~~ 83 (161)
+...+..+++++ ...++++++. |+.|++||+++++++..+.+|.++|++++ +|++|+.|| |++||++++
T Consensus 170 ~~~~v~~~~~~~~~~~~~~~s~~~--d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~ 247 (340)
T 4aow_A 170 HSEWVSCVRFSPNSSNPIIVSCGW--DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG 247 (340)
T ss_dssp CSSCEEEEEECSCSSSCEEEEEET--TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred ccCcccceEEccCCCCcEEEEEcC--CCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC
Confidence 334455555544 4566777665 99999999999999999999999999998 899999999 999999987
Q ss_pred CceeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEE----------ecCceEEEEECCc--EEE
Q psy505 84 DTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYS----------FSNTILAVKLNRK--KEE 151 (161)
Q Consensus 84 ~~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~----------~~~~V~~v~~~~~--~~v 151 (161)
+++ ..+.++. .+..+.|+|+...++++ .|++|+|||++++.++.++. +...|.+++|+|+ .++
T Consensus 248 ~~~-~~~~~~~---~v~~~~~~~~~~~~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~ 322 (340)
T 4aow_A 248 KHL-YTLDGGD---IINALCFSPNRYWLCAA-TGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLF 322 (340)
T ss_dssp EEE-EEEECSS---CEEEEEECSSSSEEEEE-ETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEE
T ss_pred cee-eeecCCc---eEEeeecCCCCceeecc-CCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEE
Confidence 765 3444443 36788899988766654 67899999999988776653 3568999999998 566
Q ss_pred EEecc
Q psy505 152 EEDEE 156 (161)
Q Consensus 152 v~~~~ 156 (161)
....|
T Consensus 323 sgs~D 327 (340)
T 4aow_A 323 AGYTD 327 (340)
T ss_dssp EEETT
T ss_pred EEeCC
Confidence 66555
No 73
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.82 E-value=4.9e-20 Score=148.10 Aligned_cols=124 Identities=11% Similarity=0.151 Sum_probs=103.8
Q ss_pred eEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee------eEEEecCCc-eEEEEeCCcCceeeE
Q psy505 17 ICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA------SLSVGTKSG-YRLFSLNSIDTLEQI 89 (161)
Q Consensus 17 v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~------~lasgs~dg-iriwd~~~~~~~~~~ 89 (161)
+....++|++.++|+++. ||.|++||+.++++...+.+|.++|++++ +|++|+.|| |++||+++++.+ ..
T Consensus 100 ~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~-~~ 176 (420)
T 3vl1_A 100 TAVDTAKLQMRRFILGTT--EGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP-RT 176 (420)
T ss_dssp EEEEEECSSSCEEEEEET--TSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCC-EE
T ss_pred eEEEEEecCCCEEEEEEC--CCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCc-eE
Confidence 444466889999998776 99999999999999998999999999999 899999999 999999998766 45
Q ss_pred EeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEEe----cCceEEEEE
Q psy505 90 YENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYSF----SNTILAVKL 145 (161)
Q Consensus 90 ~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~----~~~V~~v~~ 145 (161)
+.+|... +.+++|+|++..+++++.|++|++||+++++++..+.. ...|.++.|
T Consensus 177 ~~~h~~~--v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 234 (420)
T 3vl1_A 177 LIGHRAT--VTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIAL 234 (420)
T ss_dssp EECCSSC--EEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEE
T ss_pred EcCCCCc--EEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEE
Confidence 6777654 77889999888888888899999999999999888862 234554444
No 74
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.82 E-value=3e-19 Score=146.38 Aligned_cols=141 Identities=7% Similarity=0.081 Sum_probs=114.1
Q ss_pred CCceeEEeecCCC---ceEEEEcCCCCcceEEEEEcCCCCceee-eeccCccceeee-----eEEEecCCc-eEEEEeCC
Q psy505 13 NPNGICCLCVNSD---NCYLAYPGSNSIGEVQIFDADNLHAKTM-IPAHDSPLAALA-----SLSVGTKSG-YRLFSLNS 82 (161)
Q Consensus 13 ~~~~v~~~~~~~d---~~~la~~g~~~dg~v~iWd~~~~~~~~~-l~~H~~~V~~l~-----~lasgs~dg-iriwd~~~ 82 (161)
+...|.+++++|+ +.++++++. ||+|++||+.+++++.. +.+|.++|++++ +|++|+.|+ |++||+++
T Consensus 194 h~~~v~~~~~sp~~~~~~~l~s~~~--d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~ 271 (450)
T 2vdu_B 194 HVSMLTDVHLIKDSDGHQFIITSDR--DEHIKISHYPQCFIVDKWLFGHKHFVSSICCGKDYLLLSAGGDDKIFAWDWKT 271 (450)
T ss_dssp CSSCEEEEEEEECTTSCEEEEEEET--TSCEEEEEESCTTCEEEECCCCSSCEEEEEECSTTEEEEEESSSEEEEEETTT
T ss_pred ccCceEEEEEcCCCCCCcEEEEEcC--CCcEEEEECCCCceeeeeecCCCCceEEEEECCCCEEEEEeCCCeEEEEECCC
Confidence 3456889999999 989998776 99999999999998887 669999999998 799999999 99999999
Q ss_pred cCceeeEEeec-----------------------CcceEEEEEeecCCeEEEEecC-CCCeEEEEec--CCC---CeEEE
Q psy505 83 IDTLEQIYENS-----------------------QEDVCIVERLFSSSLVAVVSLS-SPRKLTVCHF--KRG---SEICN 133 (161)
Q Consensus 83 ~~~~~~~~~~~-----------------------~~~~~v~~~~fs~~~~~~~s~~-~d~~i~iWD~--~~~---~~i~~ 133 (161)
++++.. +..+ .....+..++|+|++..+++++ .|+.|+|||+ .++ +++..
T Consensus 272 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~ 350 (450)
T 2vdu_B 272 GKNLST-FDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQI 350 (450)
T ss_dssp CCEEEE-EECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEE
T ss_pred CcEeee-ecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccE
Confidence 886643 3321 1123577889999876666554 7899999999 666 66666
Q ss_pred EEecCceEEEEECCcEEEEEecc
Q psy505 134 YSFSNTILAVKLNRKKEEEEDEE 156 (161)
Q Consensus 134 l~~~~~V~~v~~~~~~~vv~~~~ 156 (161)
+..+..|.+++|+|++++++..+
T Consensus 351 ~~~~~~v~~~~~~~~~~~v~~~~ 373 (450)
T 2vdu_B 351 ITFPYNVISLSAHNDEFQVTLDN 373 (450)
T ss_dssp EECSSCEEEEEEETTEEEEEECC
T ss_pred eccCCceEEEEecCCcEEEEEec
Confidence 77668999999999988888755
No 75
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.82 E-value=3.5e-19 Score=139.39 Aligned_cols=140 Identities=11% Similarity=0.180 Sum_probs=111.6
Q ss_pred CCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee--------eEEEecCCc-eEEEEeCCc
Q psy505 13 NPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA--------SLSVGTKSG-YRLFSLNSI 83 (161)
Q Consensus 13 ~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~--------~lasgs~dg-iriwd~~~~ 83 (161)
+...|.+++++|++.++++++. ||.|++||+.+++.+. +.+|..+|++++ +|++|+.|| |++||++++
T Consensus 85 h~~~v~~~~~~~~~~~l~s~~~--dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 161 (368)
T 3mmy_A 85 HTGPVLDVCWSDDGSKVFTASC--DKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS 161 (368)
T ss_dssp CSSCEEEEEECTTSSEEEEEET--TSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS
T ss_pred ccCCEEEEEECcCCCEEEEEcC--CCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC
Confidence 4456899999999999998776 9999999999987765 678999999987 599999999 999999876
Q ss_pred CceeeEE-------------------------------------------------------------------------
Q psy505 84 DTLEQIY------------------------------------------------------------------------- 90 (161)
Q Consensus 84 ~~~~~~~------------------------------------------------------------------------- 90 (161)
+++..+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~ 241 (368)
T 3mmy_A 162 NPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVA 241 (368)
T ss_dssp SCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEE
T ss_pred cEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEE
Confidence 5432110
Q ss_pred ----------------eecCcc----------eEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEE-ecCceEEE
Q psy505 91 ----------------ENSQED----------VCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYS-FSNTILAV 143 (161)
Q Consensus 91 ----------------~~~~~~----------~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~-~~~~V~~v 143 (161)
.+|... ..+.+++|+|++..+++++.|+.|+|||+++++++..+. +...|.++
T Consensus 242 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 321 (368)
T 3mmy_A 242 IHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISAC 321 (368)
T ss_dssp EEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEE
T ss_pred EEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEE
Confidence 111100 037789999998888888889999999999999998886 57899999
Q ss_pred EECCc--EEEEEec
Q psy505 144 KLNRK--KEEEEDE 155 (161)
Q Consensus 144 ~~~~~--~~vv~~~ 155 (161)
+|+|+ .++++..
T Consensus 322 ~~s~~g~~l~~~s~ 335 (368)
T 3mmy_A 322 CFNHNGNIFAYASS 335 (368)
T ss_dssp EECTTSSCEEEEEC
T ss_pred EECCCCCeEEEEec
Confidence 99998 4665544
No 76
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.82 E-value=9.5e-19 Score=135.05 Aligned_cols=142 Identities=15% Similarity=0.188 Sum_probs=117.7
Q ss_pred cceEEecCCCCCCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee----eEEEecCCc-eE
Q psy505 2 KVLHTIRDTPPNPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA----SLSVGTKSG-YR 76 (161)
Q Consensus 2 ~~~~~~~~~~~~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~----~lasgs~dg-ir 76 (161)
++++++ ..+.+...|.+++++|+|.++|+++. ||+|+|||+++++++..+.+|...+.+++ ++++|+.++ ++
T Consensus 56 ~~~~~~-~~~~~~~~V~~v~~~~~~~~l~sgs~--Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~ 132 (318)
T 4ggc_A 56 DILQLL-QMEQPGEYISSVAWIKEGNYLAVGTS--SAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIH 132 (318)
T ss_dssp CEEEEE-ECCSTTCCEEEEEECTTSSEEEEEET--TSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEE
T ss_pred CEEEEE-EecCCCCeEEEEEECCCCCEEEEEEC--CCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceE
Confidence 456677 56667777999999999999999776 99999999999999999999999999888 999999999 99
Q ss_pred EEEeCCcCceeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEE----EE-EecCceEEEEECCc
Q psy505 77 LFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEIC----NY-SFSNTILAVKLNRK 148 (161)
Q Consensus 77 iwd~~~~~~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~----~l-~~~~~V~~v~~~~~ 148 (161)
+|+..++......+.+|... +..+.|++++..+++++.|++|+|||+++++... .. .+.+.|.++.++|+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 207 (318)
T 4ggc_A 133 HHDVRVAEHHVATLSGHSQE--VCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW 207 (318)
T ss_dssp EEETTSSSCEEEEEECCSSC--EEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTT
T ss_pred eeecCCCceeEEEEcCccCc--eEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCC
Confidence 99998876555666777654 6677888888888888899999999999876432 22 24578999999875
No 77
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.82 E-value=1.3e-18 Score=141.97 Aligned_cols=143 Identities=14% Similarity=0.232 Sum_probs=113.7
Q ss_pred cceEEecCCCCCCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee----eEEEecCCc-eE
Q psy505 2 KVLHTIRDTPPNPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA----SLSVGTKSG-YR 76 (161)
Q Consensus 2 ~~~~~~~~~~~~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~----~lasgs~dg-ir 76 (161)
++++++ .. +...+.++++ ++.++++++. ||.|++||+++++++..+.+|...+.+++ +|++|+.|| |+
T Consensus 270 ~~~~~~-~~--~~~~v~~~~~--~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~ 342 (445)
T 2ovr_B 270 TCLHTL-QG--HTNRVYSLQF--DGIHVVSGSL--DTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVK 342 (445)
T ss_dssp EEEEEE-CC--CSSCEEEEEE--CSSEEEEEET--TSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEE
T ss_pred cEeEEe-cC--CCCceEEEEE--CCCEEEEEeC--CCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEE
Confidence 345566 33 3445888888 7788888776 99999999999999999999999999998 999999999 99
Q ss_pred EEEeCCcCceeeEEeecC-cceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEE------ecCceEEEEECCcE
Q psy505 77 LFSLNSIDTLEQIYENSQ-EDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYS------FSNTILAVKLNRKK 149 (161)
Q Consensus 77 iwd~~~~~~~~~~~~~~~-~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~------~~~~V~~v~~~~~~ 149 (161)
+||+++++++. .+.++. +...+.+++|+++.+ ++++.|++|+|||+++++.+..+. +.+.|.+++|+|++
T Consensus 343 vwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~l--~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 419 (445)
T 2ovr_B 343 IWDIKTGQCLQ-TLQGPNKHQSAVTCLQFNKNFV--ITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTK 419 (445)
T ss_dssp EEETTTCCEEE-EECSTTSCSSCEEEEEECSSEE--EEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSE
T ss_pred EEECCCCcEEE-EEccCCCCCCCEEEEEECCCEE--EEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCE
Confidence 99999988663 444421 223477888987764 444578999999999999998882 45789999999997
Q ss_pred EEEEe
Q psy505 150 EEEED 154 (161)
Q Consensus 150 ~vv~~ 154 (161)
..++.
T Consensus 420 ~~la~ 424 (445)
T 2ovr_B 420 LVCAV 424 (445)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66554
No 78
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.82 E-value=9.8e-19 Score=142.62 Aligned_cols=144 Identities=9% Similarity=0.087 Sum_probs=117.0
Q ss_pred ceEEecCCCCCCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee----eEEEecCCc-eEE
Q psy505 3 VLHTIRDTPPNPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA----SLSVGTKSG-YRL 77 (161)
Q Consensus 3 ~~~~~~~~~~~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~----~lasgs~dg-iri 77 (161)
..+.+ ..|.... +.++++ +|.++++++. ||+|++||+.+++++..+.+|.++|++++ ++++|+.|| |++
T Consensus 110 ~~~~l-~~h~~~v-~~~~~~--~g~~l~sg~~--dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~v 183 (445)
T 2ovr_B 110 SPKVL-KGHDDHV-ITCLQF--CGNRIVSGSD--DNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKV 183 (445)
T ss_dssp CCEEE-ECSTTSC-EEEEEE--ETTEEEEEET--TSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEE
T ss_pred eeEEe-cccCCCc-EEEEEE--cCCEEEEEEC--CCcEEEEECCCCcEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEE
Confidence 34555 4544432 456666 6788998776 99999999999999999999999999999 999999999 999
Q ss_pred EEeCCcCceeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEE-ecCceEEEEECCcEEEEEecc
Q psy505 78 FSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYS-FSNTILAVKLNRKKEEEEDEE 156 (161)
Q Consensus 78 wd~~~~~~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~-~~~~V~~v~~~~~~~vv~~~~ 156 (161)
||+++++.. ..+.+|... +.++.|+++.++ +++.|++|++||+++++++..+. +...|.++.|+++.+++...+
T Consensus 184 wd~~~~~~~-~~~~~h~~~--v~~~~~~~~~l~--s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d 258 (445)
T 2ovr_B 184 WNAETGECI-HTLYGHTST--VRCMHLHEKRVV--SGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYD 258 (445)
T ss_dssp EETTTTEEE-EEECCCSSC--EEEEEEETTEEE--EEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETT
T ss_pred EECCcCcEE-EEECCCCCc--EEEEEecCCEEE--EEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEcCC
Confidence 999998765 456677654 667888888754 44568999999999999998886 678999999998888888766
Q ss_pred c
Q psy505 157 E 157 (161)
Q Consensus 157 ~ 157 (161)
.
T Consensus 259 g 259 (445)
T 2ovr_B 259 F 259 (445)
T ss_dssp S
T ss_pred C
Confidence 3
No 79
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.82 E-value=7.4e-19 Score=144.05 Aligned_cols=146 Identities=10% Similarity=0.092 Sum_probs=118.3
Q ss_pred ceEEecCCCCCCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCcee----eeeccCccceeee---------eEEE
Q psy505 3 VLHTIRDTPPNPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKT----MIPAHDSPLAALA---------SLSV 69 (161)
Q Consensus 3 ~~~~~~~~~~~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~----~l~~H~~~V~~l~---------~las 69 (161)
++.++ ..+.++..+.+++++|+|.+|++++. ||.|++||+.+++... .+.+|.++|++++ +|++
T Consensus 139 ~~~~~-~~~~~~~~v~~~~~sp~~~~l~~~~~--~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s 215 (450)
T 2vdu_B 139 VLKLR-KRFCFSKRPNAISIAEDDTTVIIADK--FGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIIT 215 (450)
T ss_dssp CEEEE-EEEECSSCEEEEEECTTSSEEEEEET--TSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEE
T ss_pred eeeee-ecccCCCCceEEEEcCCCCEEEEEeC--CCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEE
Confidence 44555 33455677999999999999998765 8999999999887554 8899999999886 6899
Q ss_pred ecCCc-eEEEEeCCcCceeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEEec-----------
Q psy505 70 GTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYSFS----------- 137 (161)
Q Consensus 70 gs~dg-iriwd~~~~~~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~~----------- 137 (161)
|+.|+ |++||+++++.+..++.+|... +.+++|+ ++..+++++.|++|+|||+++++++..+...
T Consensus 216 ~~~d~~i~vwd~~~~~~~~~~~~~h~~~--v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 292 (450)
T 2vdu_B 216 SDRDEHIKISHYPQCFIVDKWLFGHKHF--VSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQH 292 (450)
T ss_dssp EETTSCEEEEEESCTTCEEEECCCCSSC--EEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTS
T ss_pred EcCCCcEEEEECCCCceeeeeecCCCCc--eEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcc
Confidence 99999 9999999988765556677654 6777888 7777888888999999999999999888632
Q ss_pred ---------------CceEEEEECCc--EEEEEe
Q psy505 138 ---------------NTILAVKLNRK--KEEEED 154 (161)
Q Consensus 138 ---------------~~V~~v~~~~~--~~vv~~ 154 (161)
..|.++.|+|+ .+++..
T Consensus 293 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 326 (450)
T 2vdu_B 293 LAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFV 326 (450)
T ss_dssp BC----------CBCCCEEEEEECSSSSEEEEEE
T ss_pred cccccccccccccceEEEEEEEEeCCCCEEEEEE
Confidence 46889999987 455554
No 80
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.82 E-value=1.8e-19 Score=145.61 Aligned_cols=139 Identities=13% Similarity=0.162 Sum_probs=108.6
Q ss_pred CCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCC-----------ceeeeeccC------------ccceeee----
Q psy505 13 NPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLH-----------AKTMIPAHD------------SPLAALA---- 65 (161)
Q Consensus 13 ~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~-----------~~~~l~~H~------------~~V~~l~---- 65 (161)
+...|.+++++|+|.+||+++. ||.|+|||+.+++ +...+++|. ++|.+++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~--dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDK--GGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEET--TSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred ccCcEEEEEECCCCCEEEEEcC--CCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence 3567999999999999999776 9999999999887 578899998 8899998
Q ss_pred ----eEEEecCCc-eEEEEeCCcCce---------------------------------------eeEEeecCcceEEEE
Q psy505 66 ----SLSVGTKSG-YRLFSLNSIDTL---------------------------------------EQIYENSQEDVCIVE 101 (161)
Q Consensus 66 ----~lasgs~dg-iriwd~~~~~~~---------------------------------------~~~~~~~~~~~~v~~ 101 (161)
+|++|+.|| |++||+.+++.. ..+..+|.. .|.+
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~ 182 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTY--HINS 182 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSS--CCCE
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCc--ceEE
Confidence 589999999 999999764321 011245654 4678
Q ss_pred EeecCCeEEEEecCCCCeEEEEecCC-CCeEEEE--------EecCceEEEEECCcE---EEEEecc
Q psy505 102 RLFSSSLVAVVSLSSPRKLTVCHFKR-GSEICNY--------SFSNTILAVKLNRKK---EEEEDEE 156 (161)
Q Consensus 102 ~~fs~~~~~~~s~~~d~~i~iWD~~~-~~~i~~l--------~~~~~V~~v~~~~~~---~vv~~~~ 156 (161)
++|+|++..++++ .|++|+|||+++ ++++..+ .|...|.+++|+|+. ++....+
T Consensus 183 ~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d 248 (447)
T 3dw8_B 183 ISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSK 248 (447)
T ss_dssp EEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETT
T ss_pred EEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCC
Confidence 8999999888888 799999999994 5555543 256789999999974 6665554
No 81
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.82 E-value=3.2e-19 Score=161.27 Aligned_cols=148 Identities=16% Similarity=0.185 Sum_probs=122.5
Q ss_pred ceEEecCCCCCCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee--------eEEEecCCc
Q psy505 3 VLHTIRDTPPNPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA--------SLSVGTKSG 74 (161)
Q Consensus 3 ~~~~~~~~~~~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~--------~lasgs~dg 74 (161)
+++++ . .+...|.+++++|||.++|+++. ||+|+|||+.+++++..+.+|..+|++++ ++++|+.||
T Consensus 649 ~~~~~-~--~h~~~v~~~~~s~~~~~l~s~~~--d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~ 723 (1249)
T 3sfz_A 649 KLLDI-K--AHEDEVLCCAFSSDDSYIATCSA--DKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDF 723 (1249)
T ss_dssp EEEEE-C--CCSSCEEEEEECTTSSEEEEEET--TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTS
T ss_pred EEEEe-c--cCCCCEEEEEEecCCCEEEEEeC--CCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCC
Confidence 45556 3 34556999999999999999776 99999999999999999999999999998 789999999
Q ss_pred -eEEEEeCCcCceeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEEec--------------Cc
Q psy505 75 -YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYSFS--------------NT 139 (161)
Q Consensus 75 -iriwd~~~~~~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~~--------------~~ 139 (161)
|++||++++++. ..+.+|.+. +.+++|+|++..+++++.|++|++||+++++....+... ..
T Consensus 724 ~v~vwd~~~~~~~-~~~~~h~~~--v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1249)
T 3sfz_A 724 FLKLWDLNQKECR-NTMFGHTNS--VNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVI 800 (1249)
T ss_dssp CEEEEETTSSSEE-EEECCCSSC--EEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCC
T ss_pred eEEEEECCCcchh-heecCCCCC--EEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccce
Confidence 999999998765 456677654 778899999888888889999999999999888776532 26
Q ss_pred eEEEEECCc--EEEEEeccce
Q psy505 140 ILAVKLNRK--KEEEEDEEEE 158 (161)
Q Consensus 140 V~~v~~~~~--~~vv~~~~~~ 158 (161)
|.++.|+|+ .++++..+.+
T Consensus 801 v~~~~~s~dg~~l~~~~~~~v 821 (1249)
T 3sfz_A 801 VKCCSWSADGDKIIVAAKNKV 821 (1249)
T ss_dssp BCCCCBCTTSSEEEEEETTEE
T ss_pred EEEEEECCCCCEEEEEcCCcE
Confidence 888999997 5555555444
No 82
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.82 E-value=2.4e-19 Score=152.97 Aligned_cols=137 Identities=14% Similarity=0.122 Sum_probs=109.8
Q ss_pred CceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCcc-----ceeee------eEEEecCCc-eEEEEeC
Q psy505 14 PNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSP-----LAALA------SLSVGTKSG-YRLFSLN 81 (161)
Q Consensus 14 ~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~-----V~~l~------~lasgs~dg-iriwd~~ 81 (161)
...|.+++++|||.+||+++. ||+|+|||..+ ++..+. |..+ |.+++ +||+|++|| |+|||+.
T Consensus 85 ~~~V~~vawSPdG~~LAs~s~--dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~ 159 (588)
T 2j04_A 85 VCYPRVCKPSPIDDWMAVLSN--NGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR 159 (588)
T ss_dssp SCCEEEEEECSSSSCEEEEET--TSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred CCcEEEEEECCCCCEEEEEeC--CCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence 456999999999999999776 99999999654 777788 8775 88998 999999999 9999998
Q ss_pred CcCc------eeeEE----eecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCe---EEEEE--ecCceEEEEEC
Q psy505 82 SIDT------LEQIY----ENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSE---ICNYS--FSNTILAVKLN 146 (161)
Q Consensus 82 ~~~~------~~~~~----~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~---i~~l~--~~~~V~~v~~~ 146 (161)
++.. ....+ .||.+ +|.+++|+|++ +++++.|++|++||+..+++ ..++. +...|.+|+|+
T Consensus 160 ~~~l~~~~~i~l~ti~~~~~gh~~--~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs 235 (588)
T 2j04_A 160 KNSENTPEFYFESSIRLSDAGSKD--WVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV 235 (588)
T ss_dssp CCTTTCCCCEEEEEEECSCTTCCC--CEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE
T ss_pred CCccccccceeeeeeecccccccc--cEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE
Confidence 8752 12343 44543 68899999999 55555799999999998874 35664 46799999999
Q ss_pred CcEEEEEecccee
Q psy505 147 RKKEEEEDEEEEK 159 (161)
Q Consensus 147 ~~~~vv~~~~~~~ 159 (161)
.+.++.+....|+
T Consensus 236 g~~LASa~~~tIk 248 (588)
T 2j04_A 236 DYKVVLTCPGYVH 248 (588)
T ss_dssp TTEEEEECSSEEE
T ss_pred CCEEEEEeCCeEE
Confidence 6688888776665
No 83
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.82 E-value=5.1e-20 Score=143.78 Aligned_cols=146 Identities=15% Similarity=0.083 Sum_probs=118.4
Q ss_pred CcceEEecCCCCCCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCC---ceeeeeccCccceeee-------eEEEe
Q psy505 1 MKVLHTIRDTPPNPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLH---AKTMIPAHDSPLAALA-------SLSVG 70 (161)
Q Consensus 1 ~~~~~~~~~~~~~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~---~~~~l~~H~~~V~~l~-------~lasg 70 (161)
|+.+... . .+...|.+++++|++.++++++. ||.|+|||+.+++ ....+.+|..+|.+++ +|++|
T Consensus 1 m~~~~~~-~--~h~~~v~~~~~s~~~~~l~~~~~--d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 75 (342)
T 1yfq_A 1 MQIVQIE-Q--APKDYISDIKIIPSKSLLLITSW--DGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVG 75 (342)
T ss_dssp CEEEECS-S--CCSSCEEEEEEEGGGTEEEEEET--TSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEE
T ss_pred Ccceecc-c--CCCCcEEEEEEcCCCCEEEEEcC--CCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEE
Confidence 4455444 3 45567999999999999998776 9999999999887 3566779999999998 48999
Q ss_pred cCCc-eEEEEe-CCcCceeeEEee--cCcceEEEEEeecCCeEEEEecCCCCeEEEEecCC---------CCeEEEEEec
Q psy505 71 TKSG-YRLFSL-NSIDTLEQIYEN--SQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKR---------GSEICNYSFS 137 (161)
Q Consensus 71 s~dg-iriwd~-~~~~~~~~~~~~--~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~---------~~~i~~l~~~ 137 (161)
+.|| |++||+ ++++. ..+.+ |.. .+.+++|+| +..+++++.|+.|++||+++ ++++..+.+.
T Consensus 76 ~~dg~i~~wd~~~~~~~--~~~~~~~~~~--~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 150 (342)
T 1yfq_A 76 TVQGEILKVDLIGSPSF--QALTNNEANL--GICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVK 150 (342)
T ss_dssp ETTSCEEEECSSSSSSE--EECBSCCCCS--CEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSC
T ss_pred cCCCeEEEEEeccCCce--EeccccCCCC--ceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeC
Confidence 9999 999999 88754 45566 765 467888998 55566677899999999998 7777777788
Q ss_pred CceEEEEECCcEEEEEecc
Q psy505 138 NTILAVKLNRKKEEEEDEE 156 (161)
Q Consensus 138 ~~V~~v~~~~~~~vv~~~~ 156 (161)
..|.+++|+|+.++++..+
T Consensus 151 ~~v~~~~~~~~~l~~~~~d 169 (342)
T 1yfq_A 151 NKIFTMDTNSSRLIVGMNN 169 (342)
T ss_dssp CCEEEEEECSSEEEEEEST
T ss_pred CceEEEEecCCcEEEEeCC
Confidence 9999999999998888776
No 84
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.81 E-value=7.9e-19 Score=137.51 Aligned_cols=139 Identities=12% Similarity=0.178 Sum_probs=110.3
Q ss_pred CCceeEEeecCCC----ceEEEEcCCCCcceEEEEEcCCCCceeeeec-----cCccceeee----------eEEEecCC
Q psy505 13 NPNGICCLCVNSD----NCYLAYPGSNSIGEVQIFDADNLHAKTMIPA-----HDSPLAALA----------SLSVGTKS 73 (161)
Q Consensus 13 ~~~~v~~~~~~~d----~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~-----H~~~V~~l~----------~lasgs~d 73 (161)
+...|.+++++|+ ...+++++. +|.|++||+.+++.+..++. |...|.+++ +|++|+.|
T Consensus 17 h~~~v~~i~~~p~~~~~~~~~~~~~~--~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d 94 (366)
T 3k26_A 17 HNQPLFGVQFNWHSKEGDPLVFATVG--SNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSR 94 (366)
T ss_dssp TCSCEEEEEECTTCCTTSCEEEEEEE--TTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETT
T ss_pred CCCceEEEEEecccCCCCceEEEECC--CCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCC
Confidence 4456888888873 334444444 78999999999888877775 446788887 59999999
Q ss_pred c-eEEEEeCCcCceeeEEeecCcceEEEEEeecC-CeEEEEecCCCCeEEEEecCCCCeEEEE----EecCceEEEEECC
Q psy505 74 G-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSS-SLVAVVSLSSPRKLTVCHFKRGSEICNY----SFSNTILAVKLNR 147 (161)
Q Consensus 74 g-iriwd~~~~~~~~~~~~~~~~~~~v~~~~fs~-~~~~~~s~~~d~~i~iWD~~~~~~i~~l----~~~~~V~~v~~~~ 147 (161)
| |++||+++++.+ ..+.+|.. .+.++.|+| ++..+++++.|++|++||+++++.+..+ .+...|.+++|+|
T Consensus 95 g~i~v~d~~~~~~~-~~~~~~~~--~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 171 (366)
T 3k26_A 95 GIIRIINPITMQCI-KHYVGHGN--AINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL 171 (366)
T ss_dssp CEEEEECTTTCCEE-EEEESCCS--CEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECT
T ss_pred CEEEEEEchhceEe-eeecCCCC--cEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECC
Confidence 9 999999998766 45667765 477889999 7777888888999999999999998888 3678999999998
Q ss_pred c--EEEEEecc
Q psy505 148 K--KEEEEDEE 156 (161)
Q Consensus 148 ~--~~vv~~~~ 156 (161)
+ .++++..+
T Consensus 172 ~~~~l~~~~~d 182 (366)
T 3k26_A 172 LGEKIMSCGMD 182 (366)
T ss_dssp TSSEEEEEETT
T ss_pred CCCEEEEecCC
Confidence 7 56665544
No 85
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.81 E-value=1.3e-19 Score=145.89 Aligned_cols=112 Identities=9% Similarity=0.075 Sum_probs=95.7
Q ss_pred CCceeEEeecCCCceEEEEcCCCCcc----eEEEEEcCCCCc----eeeeeccCccceeee------eEEEecCCc-eEE
Q psy505 13 NPNGICCLCVNSDNCYLAYPGSNSIG----EVQIFDADNLHA----KTMIPAHDSPLAALA------SLSVGTKSG-YRL 77 (161)
Q Consensus 13 ~~~~v~~~~~~~d~~~la~~g~~~dg----~v~iWd~~~~~~----~~~l~~H~~~V~~l~------~lasgs~dg-iri 77 (161)
+...+.+++|+|||..+++++. |+ .+++||+..+.. ...+.+|..+|++++ +||+|+.|+ |+|
T Consensus 218 ~~~~v~~v~fspdg~~l~~~s~--d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~i 295 (365)
T 4h5i_A 218 KNWSLSKINFIADDTVLIAASL--KKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIAL 295 (365)
T ss_dssp TTEEEEEEEEEETTEEEEEEEE--SSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEE
T ss_pred CCCCEEEEEEcCCCCEEEEEec--CCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEE
Confidence 4556889999999999998765 55 689999887653 456889999999998 999999999 999
Q ss_pred EEeCCcCceeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCC
Q psy505 78 FSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRG 128 (161)
Q Consensus 78 wd~~~~~~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~ 128 (161)
||+++++++..++++|... |.+++||||+..++|++.|++|||||+..+
T Consensus 296 wd~~~~~~~~~~~~gH~~~--V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 296 VKLKDLSMSKIFKQAHSFA--ITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EETTTTEEEEEETTSSSSC--EEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EECCCCcEEEEecCcccCC--EEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 9999998776666788754 788999999999999999999999998654
No 86
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.81 E-value=4.2e-19 Score=141.42 Aligned_cols=139 Identities=17% Similarity=0.139 Sum_probs=117.8
Q ss_pred CCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee-----eEEEecCCc-eEEEEeCCcCce
Q psy505 13 NPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA-----SLSVGTKSG-YRLFSLNSIDTL 86 (161)
Q Consensus 13 ~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~-----~lasgs~dg-iriwd~~~~~~~ 86 (161)
+...+.+++++|++.++++++. ||.|++||+.+++++..+.+|..+|.+++ ++++++.|| |++||+++++.+
T Consensus 246 ~~~~i~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 323 (425)
T 1r5m_A 246 HHGPISVLEFNDTNKLLLSASD--DGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLL 323 (425)
T ss_dssp CSSCEEEEEEETTTTEEEEEET--TSCEEEECSSSBSCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEE
T ss_pred CCCceEEEEECCCCCEEEEEcC--CCEEEEEECCCCccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEe
Confidence 3456889999999999998776 99999999999999999999999999998 789999999 999999988755
Q ss_pred eeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCC--------------------eEEEEEe-cC--ceEEE
Q psy505 87 EQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGS--------------------EICNYSF-SN--TILAV 143 (161)
Q Consensus 87 ~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~--------------------~i~~l~~-~~--~V~~v 143 (161)
..+.+|.. .+.+++|+|++..+++++.|+.|++||+++++ ++..+.. .. .|.++
T Consensus 324 -~~~~~~~~--~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 400 (425)
T 1r5m_A 324 -ALSIVDGV--PIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDL 400 (425)
T ss_dssp -EEEECTTC--CEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEE
T ss_pred -EecccCCc--cEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEE
Confidence 45566654 47788999998888888889999999999888 7888764 34 99999
Q ss_pred EECCc--EEEEEecc
Q psy505 144 KLNRK--KEEEEDEE 156 (161)
Q Consensus 144 ~~~~~--~~vv~~~~ 156 (161)
+|+|+ .++++..+
T Consensus 401 ~~s~~~~~l~~~~~d 415 (425)
T 1r5m_A 401 SWNCAGNKISVAYSL 415 (425)
T ss_dssp EECTTSSEEEEEESS
T ss_pred EccCCCceEEEEecC
Confidence 99998 56666655
No 87
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.5e-19 Score=161.27 Aligned_cols=131 Identities=11% Similarity=0.142 Sum_probs=106.5
Q ss_pred CCCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCC------------------------------------------
Q psy505 12 PNPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLH------------------------------------------ 49 (161)
Q Consensus 12 ~~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~------------------------------------------ 49 (161)
.+...|.+++|+|||.+||+++. ||+|+|||+.+++
T Consensus 486 ~h~~~V~svafspdg~~LAsgs~--DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (902)
T 2oaj_A 486 AKELAVDKISFAAETLELAVSIE--TGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQ 563 (902)
T ss_dssp SSSCCEEEEEEETTTTEEEEEET--TSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSE
T ss_pred CCCCceeEEEecCCCCeEEEEec--CcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCC
Confidence 34457999999999999999776 9999999998763
Q ss_pred ---ceeeeeccCccceeee-----eEEEecCCc-eEEEEeCCcCceee----EE-eecCcceEEEEEeec-----CC---
Q psy505 50 ---AKTMIPAHDSPLAALA-----SLSVGTKSG-YRLFSLNSIDTLEQ----IY-ENSQEDVCIVERLFS-----SS--- 107 (161)
Q Consensus 50 ---~~~~l~~H~~~V~~l~-----~lasgs~dg-iriwd~~~~~~~~~----~~-~~~~~~~~v~~~~fs-----~~--- 107 (161)
++..+++|.++|++|+ +||+|+.|+ |||||++++..+.. .+ .+|.+ .|.+++|+ ||
T Consensus 564 g~~~~~~l~~h~~~V~svafSpdG~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~--~V~sv~Fs~~~~~~Dg~~ 641 (902)
T 2oaj_A 564 GFMPSTAVHANKGKTSAINNSNIGFVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSA--CVTCIEFVIMEYGDDGYS 641 (902)
T ss_dssp EEEEEEEECCCSCSEEEEEECBTSEEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCC--CEEEEEEEEEECTTSSSE
T ss_pred ccceeEEEEcCCCcEEEEEecCCcEEEEEeCCCcEEEEECCCCeEEEEeehhHhcccccc--ceEEEEEEEEecCCCCCc
Confidence 4678899999999999 999999999 99999977543211 12 25654 57889999 77
Q ss_pred eEEEEecCCCCeEEEEec---CCCCeEEEEE-e-----cCceEEEE-EC
Q psy505 108 LVAVVSLSSPRKLTVCHF---KRGSEICNYS-F-----SNTILAVK-LN 146 (161)
Q Consensus 108 ~~~~~s~~~d~~i~iWD~---~~~~~i~~l~-~-----~~~V~~v~-~~ 146 (161)
+..+++++.|++|++||+ .+|+++..+. + .++|.++. |+
T Consensus 642 ~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~ 690 (902)
T 2oaj_A 642 SILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFS 690 (902)
T ss_dssp EEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEE
T ss_pred ceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEe
Confidence 488999999999999999 8899888775 3 36888887 66
No 88
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.81 E-value=9.2e-19 Score=137.88 Aligned_cols=132 Identities=14% Similarity=0.092 Sum_probs=109.4
Q ss_pred CCCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCc----eeeeeccCccceeee------eEEEecCCc-eEEEEe
Q psy505 12 PNPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHA----KTMIPAHDSPLAALA------SLSVGTKSG-YRLFSL 80 (161)
Q Consensus 12 ~~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~----~~~l~~H~~~V~~l~------~lasgs~dg-iriwd~ 80 (161)
.+...+.+++++|++.++++++. ||.|++||+.+++. .....+|...|.+++ +|++|+.|| +++||+
T Consensus 94 ~~~~~v~~~~~~~~~~~l~~~~~--d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~ 171 (372)
T 1k8k_C 94 RINRAARCVRWAPNEKKFAVGSG--SRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSA 171 (372)
T ss_dssp CCSSCEEEEEECTTSSEEEEEET--TSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred cCCCceeEEEECCCCCEEEEEeC--CCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEc
Confidence 45567999999999999999776 99999999998873 333468999999999 899999999 999995
Q ss_pred C------------------CcCceeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEE-ecCceE
Q psy505 81 N------------------SIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYS-FSNTIL 141 (161)
Q Consensus 81 ~------------------~~~~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~-~~~~V~ 141 (161)
+ +++++ ..+.+|.. .+.+++|+|++..+++++.|+.|++||+++++++..+. +..+|.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~ 248 (372)
T 1k8k_C 172 YIKEVEERPAPTPWGSKMPFGELM-FESSSSCG--WVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLL 248 (372)
T ss_dssp CCTTTSCCCCCBTTBSCCCTTCEE-EECCCCSS--CEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEE
T ss_pred ccccccccccccccccccchhhhe-EecCCCCC--eEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeE
Confidence 4 45544 44556654 47788999998778888889999999999999998887 467999
Q ss_pred EEEECCc
Q psy505 142 AVKLNRK 148 (161)
Q Consensus 142 ~v~~~~~ 148 (161)
+++|+|+
T Consensus 249 ~~~~~~~ 255 (372)
T 1k8k_C 249 AVTFITE 255 (372)
T ss_dssp EEEEEET
T ss_pred EEEEecC
Confidence 9999987
No 89
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.81 E-value=1e-18 Score=142.46 Aligned_cols=137 Identities=17% Similarity=0.318 Sum_probs=114.1
Q ss_pred CCCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee----eEEEecCCc-eEEEEeCCcCce
Q psy505 12 PNPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA----SLSVGTKSG-YRLFSLNSIDTL 86 (161)
Q Consensus 12 ~~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~----~lasgs~dg-iriwd~~~~~~~ 86 (161)
.+..+|.++++ |+.++++++. ||+|++||+.+++++..+.+|.++|.+++ +|++|+.|| |++||+++++.+
T Consensus 131 ~~~~~v~~~~~--d~~~l~~g~~--dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~ 206 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQKIVSGLR--DNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEML 206 (435)
T ss_dssp SSCCCEEEEEC--CSSEEEEEES--SSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEE
T ss_pred CCCCcEEEEEE--CCCEEEEEeC--CCeEEEEeCCCCeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCCcEE
Confidence 34567889887 7889998776 99999999999999999999999999999 999999999 999999998866
Q ss_pred eeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEE---EEE-ecCceEEEEECCcEEEEEeccc
Q psy505 87 EQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEIC---NYS-FSNTILAVKLNRKKEEEEDEEE 157 (161)
Q Consensus 87 ~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~---~l~-~~~~V~~v~~~~~~~vv~~~~~ 157 (161)
..+.+|.. .+.++.|+++.+ ++++.|++|++||+++++.+. .+. +...|.++.|+++.++++..+.
T Consensus 207 -~~~~~h~~--~v~~l~~~~~~l--~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg 276 (435)
T 1p22_A 207 -NTLIHHCE--AVLHLRFNNGMM--VTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDR 276 (435)
T ss_dssp -EEECCCCS--CEEEEECCTTEE--EEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTS
T ss_pred -EEEcCCCC--cEEEEEEcCCEE--EEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCC
Confidence 45667765 477888998854 444578999999999987663 333 5789999999999998887763
No 90
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.81 E-value=5.4e-19 Score=139.20 Aligned_cols=140 Identities=11% Similarity=0.151 Sum_probs=112.2
Q ss_pred CCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCC--ceeeeeccCccceeee------eEEEecCCc-eEEEEeCCc
Q psy505 13 NPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLH--AKTMIPAHDSPLAALA------SLSVGTKSG-YRLFSLNSI 83 (161)
Q Consensus 13 ~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~--~~~~l~~H~~~V~~l~------~lasgs~dg-iriwd~~~~ 83 (161)
+...|.+++++||+.++|+++. ||.|++||+.+++ ++..+.+|..+|.+++ +|++|+.|| |++||++++
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~--d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 84 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPN--NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR 84 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECS--SSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT
T ss_pred cCCCeEEEEECCCCCEEEEEeC--CCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCC
Confidence 3456889999999999999776 9999999999987 8899999999999998 899999999 999999887
Q ss_pred CceeeE-EeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCe---EEEEE--ecCceEEEEECCc--EEEEEec
Q psy505 84 DTLEQI-YENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSE---ICNYS--FSNTILAVKLNRK--KEEEEDE 155 (161)
Q Consensus 84 ~~~~~~-~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~---i~~l~--~~~~V~~v~~~~~--~~vv~~~ 155 (161)
+..... ..+|.. .+.+++|+|++..+++++.|+.|++||++.++. ...+. +...|.+++|+|+ .+++...
T Consensus 85 ~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 162 (372)
T 1k8k_C 85 TWKPTLVILRINR--AARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC 162 (372)
T ss_dssp EEEEEEECCCCSS--CEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred eeeeeEEeecCCC--ceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC
Confidence 533221 234543 477889999988888888899999999998874 23332 4689999999997 4555544
Q ss_pred c
Q psy505 156 E 156 (161)
Q Consensus 156 ~ 156 (161)
+
T Consensus 163 d 163 (372)
T 1k8k_C 163 D 163 (372)
T ss_dssp T
T ss_pred C
Confidence 3
No 91
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.81 E-value=1.8e-18 Score=141.01 Aligned_cols=143 Identities=11% Similarity=0.160 Sum_probs=117.0
Q ss_pred ceEEecCCCCCCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee----eEEEecCCc-eEE
Q psy505 3 VLHTIRDTPPNPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA----SLSVGTKSG-YRL 77 (161)
Q Consensus 3 ~~~~~~~~~~~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~----~lasgs~dg-iri 77 (161)
++.++ .. +...|.++++ ++.++++++. ||+|++||+.+++++..+.+|.++|.+++ ++++|+.|| |++
T Consensus 165 ~~~~~-~~--h~~~v~~l~~--~~~~l~sg~~--dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~v 237 (435)
T 1p22_A 165 CKRIL-TG--HTGSVLCLQY--DERVIITGSS--DSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAV 237 (435)
T ss_dssp EEEEE-CC--CSSCEEEEEC--CSSEEEEEET--TSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEE
T ss_pred EEEEE-cC--CCCcEEEEEE--CCCEEEEEcC--CCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEE
Confidence 44555 33 4456889988 7788998776 99999999999999999999999999999 999999999 999
Q ss_pred EEeCCcCcee--eEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEE-ecCceEEEEECCcEEEEEe
Q psy505 78 FSLNSIDTLE--QIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYS-FSNTILAVKLNRKKEEEED 154 (161)
Q Consensus 78 wd~~~~~~~~--~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~-~~~~V~~v~~~~~~~vv~~ 154 (161)
||+++++... ..+.+|... +.++.|.++.++ +++.|++|++||+++++++..+. +...|.++.|+++.+++..
T Consensus 238 wd~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~l~--s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~ 313 (435)
T 1p22_A 238 WDMASPTDITLRRVLVGHRAA--VNVVDFDDKYIV--SASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGS 313 (435)
T ss_dssp EECSSSSCCEEEEEECCCSSC--EEEEEEETTEEE--EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEE
T ss_pred EeCCCCCCceeeeEecCCCCc--EEEEEeCCCEEE--EEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeCCCEEEEEe
Confidence 9998876542 345567654 667778766654 44468899999999999999887 6789999999998888887
Q ss_pred cc
Q psy505 155 EE 156 (161)
Q Consensus 155 ~~ 156 (161)
.+
T Consensus 314 ~d 315 (435)
T 1p22_A 314 SD 315 (435)
T ss_dssp TT
T ss_pred CC
Confidence 66
No 92
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.81 E-value=2.1e-19 Score=143.78 Aligned_cols=140 Identities=14% Similarity=0.199 Sum_probs=114.7
Q ss_pred CCceeEEeecCCCceEEEEcCCCCcceEEEEEcCC----CCceeeeeccCccceeee-------eEEEecCCc-eEEEEe
Q psy505 13 NPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADN----LHAKTMIPAHDSPLAALA-------SLSVGTKSG-YRLFSL 80 (161)
Q Consensus 13 ~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~----~~~~~~l~~H~~~V~~l~-------~lasgs~dg-iriwd~ 80 (161)
+...+.+++++|++.+|++++. ||.|++||+.+ .+.+..+.+|.++|++++ +|++|+.|| |++||+
T Consensus 66 ~~~~v~~~~~s~~~~~l~~~~~--dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~ 143 (416)
T 2pm9_A 66 VDSKFNDLDWSHNNKIIAGALD--NGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM 143 (416)
T ss_dssp CSSCEEEEEECSSSSCEEEEES--SSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBT
T ss_pred cCCceEEEEECCCCCeEEEEcc--CCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEEC
Confidence 4567999999999999998776 99999999998 458889999999999998 899999999 999999
Q ss_pred CCcC------ceeeE--EeecCcceEEEEEeecCC-eEEEEecCCCCeEEEEecCCCCeEEEEEe-------cCceEEEE
Q psy505 81 NSID------TLEQI--YENSQEDVCIVERLFSSS-LVAVVSLSSPRKLTVCHFKRGSEICNYSF-------SNTILAVK 144 (161)
Q Consensus 81 ~~~~------~~~~~--~~~~~~~~~v~~~~fs~~-~~~~~s~~~d~~i~iWD~~~~~~i~~l~~-------~~~V~~v~ 144 (161)
++++ ..... ..+|.. .+.+++|+|+ ...+++++.|+.|++||+++++++..+.. ...|.+++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~ 221 (416)
T 2pm9_A 144 NKCTESPSNYTPLTPGQSMSSVD--EVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVE 221 (416)
T ss_dssp TTTSSCTTTCCCBCCCCSCCSSC--CCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEE
T ss_pred CCCccccccccccccccccCCCC--CeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEE
Confidence 8875 22111 234543 4678899998 56677777899999999999999988875 57899999
Q ss_pred ECCc---EEEEEecc
Q psy505 145 LNRK---KEEEEDEE 156 (161)
Q Consensus 145 ~~~~---~~vv~~~~ 156 (161)
|+|+ .+++...+
T Consensus 222 ~~~~~~~~l~~~~~d 236 (416)
T 2pm9_A 222 WHPKNSTRVATATGS 236 (416)
T ss_dssp ECSSCTTEEEEEECC
T ss_pred ECCCCCCEEEEEECC
Confidence 9997 46666555
No 93
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.8e-19 Score=160.79 Aligned_cols=136 Identities=13% Similarity=0.027 Sum_probs=106.4
Q ss_pred eeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCce--eeee---------ccCccceeee------eEEEecCCc-eEE
Q psy505 16 GICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAK--TMIP---------AHDSPLAALA------SLSVGTKSG-YRL 77 (161)
Q Consensus 16 ~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~--~~l~---------~H~~~V~~l~------~lasgs~dg-iri 77 (161)
.+.+++++|||.++|+++. ||+||+||+.++... ..+. +|...|++++ +||+|+.|| |||
T Consensus 437 ~v~sv~~spdg~~laSgs~--DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~l 514 (902)
T 2oaj_A 437 TKRQKLPAEYGTAFITGHS--NGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVL 514 (902)
T ss_dssp CCCCCCCCSEEEEEEEEET--TSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred CCCcccccccCcEEEEecC--CCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEE
Confidence 3556788999999999776 999999999988532 1122 8999999999 999999999 999
Q ss_pred EEeCCcCc--------------------------------------------eeeEEeecCcceEEEEEeecCCeEEEEe
Q psy505 78 FSLNSIDT--------------------------------------------LEQIYENSQEDVCIVERLFSSSLVAVVS 113 (161)
Q Consensus 78 wd~~~~~~--------------------------------------------~~~~~~~~~~~~~v~~~~fs~~~~~~~s 113 (161)
||+.+++. ....+.+|.+. |.+++|||++ .+|+
T Consensus 515 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~--V~svafSpdG-~lAs 591 (902)
T 2oaj_A 515 FKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGK--TSAINNSNIG-FVGI 591 (902)
T ss_dssp EEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCS--EEEEEECBTS-EEEE
T ss_pred EEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCc--EEEEEecCCc-EEEE
Confidence 99987631 12345667654 7788999999 8999
Q ss_pred cCCCCeEEEEecCCCCeEEE--E-----EecCceEEEEEC-----Cc-----EEEEEecc
Q psy505 114 LSSPRKLTVCHFKRGSEICN--Y-----SFSNTILAVKLN-----RK-----KEEEEDEE 156 (161)
Q Consensus 114 ~~~d~~i~iWD~~~~~~i~~--l-----~~~~~V~~v~~~-----~~-----~~vv~~~~ 156 (161)
++.|++|+|||++++..+.. + .|.+.|++|+|+ || .++....+
T Consensus 592 gs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D 651 (902)
T 2oaj_A 592 AYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDM 651 (902)
T ss_dssp EETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETT
T ss_pred EeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecC
Confidence 99999999999988876642 2 245779999999 87 45555554
No 94
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.81 E-value=1e-19 Score=147.24 Aligned_cols=120 Identities=8% Similarity=0.094 Sum_probs=90.9
Q ss_pred cceEEecCCCC-CCceeEEeecCCCceEEE-----------EcCCCCcceEEEEEcCCCCceeee-----eccCccceee
Q psy505 2 KVLHTIRDTPP-NPNGICCLCVNSDNCYLA-----------YPGSNSIGEVQIFDADNLHAKTMI-----PAHDSPLAAL 64 (161)
Q Consensus 2 ~~~~~~~~~~~-~~~~v~~~~~~~d~~~la-----------~~g~~~dg~v~iWd~~~~~~~~~l-----~~H~~~V~~l 64 (161)
++++++ +++. ...++++++|+|||.+++ .+|+. |++||+||+.+++++..+ ++|.+.+.+.
T Consensus 214 k~l~tL-~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~-D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg 291 (356)
T 2w18_A 214 QLLKKM-HIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSP-VFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEG 291 (356)
T ss_dssp CEEEEE-ECCC---CCCEEEEEEETTEEEEEEC------------C-CEEEEEEETTTTEEEEEEEECCCTTCCCCEEEE
T ss_pred cEEEEE-cCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCC-CcEEEEEECCCCEEEEEEEeeccCCCcceeEcc
Confidence 578888 5433 456788889999998874 34554 999999999999987766 4887765444
Q ss_pred e----eEEEecCCc-eEEEEeCCcCceeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEec
Q psy505 65 A----SLSVGTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHF 125 (161)
Q Consensus 65 ~----~lasgs~dg-iriwd~~~~~~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~ 125 (161)
. ++|+|+.|+ |||||+++|+.+ ..+.+|...+ +..++||||+..++||+.|++|||||+
T Consensus 292 ~~sg~~lASgS~DgTIkIWDl~tGk~l-~tL~gH~~~v-vs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 292 DVKDHCAAAILTSGTIAIWDLLLGQCT-ALLPPVSDQH-WSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEETTEEEEEETTSCEEEEETTTCSEE-EEECCC--CC-CCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred ccCCCEEEEEcCCCcEEEEECCCCcEE-EEecCCCCCe-EEEEEECCCCCEEEEEECCCcEEEecC
Confidence 4 689999999 999999999866 5667776431 235789999999999999999999996
No 95
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.81 E-value=1.8e-18 Score=134.08 Aligned_cols=138 Identities=12% Similarity=0.087 Sum_probs=114.2
Q ss_pred CCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee------eEEEecCCc-eEEEEeCCcCc
Q psy505 13 NPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA------SLSVGTKSG-YRLFSLNSIDT 85 (161)
Q Consensus 13 ~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~------~lasgs~dg-iriwd~~~~~~ 85 (161)
+...+.+++++|++.++++++. ||.|++||+++++.+..+.+|..+|.+++ +|++++.|| |++||+++++.
T Consensus 140 ~~~~i~~~~~~~~~~~l~~~~~--dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 217 (337)
T 1gxr_A 140 SAPACYALAISPDSKVCFSCCS--DGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ 217 (337)
T ss_dssp SSSCEEEEEECTTSSEEEEEET--TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred CCCceEEEEECCCCCEEEEEeC--CCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCce
Confidence 3445889999999999998776 99999999999999999999999999998 899999999 99999998775
Q ss_pred eeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEEecCceEEEEECCc--EEEEEecc
Q psy505 86 LEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYSFSNTILAVKLNRK--KEEEEDEE 156 (161)
Q Consensus 86 ~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~~~~V~~v~~~~~--~~vv~~~~ 156 (161)
+. .+. +.. .+.+++|+|++..++.++.|+.|++||+++++......+...|.+++|+|+ .+++...+
T Consensus 218 ~~-~~~-~~~--~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 286 (337)
T 1gxr_A 218 LQ-QHD-FTS--QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKD 286 (337)
T ss_dssp EE-EEE-CSS--CEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred Ee-eec-CCC--ceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCC
Confidence 53 333 332 377889999988888887889999999999887544457889999999987 45555544
No 96
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.81 E-value=2.5e-18 Score=138.84 Aligned_cols=138 Identities=17% Similarity=0.216 Sum_probs=112.7
Q ss_pred CCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee-------eEEEec--CCc-eEEEEeCC
Q psy505 13 NPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA-------SLSVGT--KSG-YRLFSLNS 82 (161)
Q Consensus 13 ~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~-------~lasgs--~dg-iriwd~~~ 82 (161)
+...|.+++++|++.++++++. ||.|++||+++++++..+.+|..+|.+++ ++++|+ .|| |++||+++
T Consensus 216 ~~~~v~~~~~~~~~~~l~s~~~--d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~ 293 (401)
T 4aez_A 216 HSSEVCGLAWRSDGLQLASGGN--DNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT 293 (401)
T ss_dssp CSSCEEEEEECTTSSEEEEEET--TSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT
T ss_pred CCCCeeEEEEcCCCCEEEEEeC--CCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC
Confidence 4556999999999999999776 99999999999999999999999999998 777765 788 99999999
Q ss_pred cCceeeEEeecCcceEEEEEeecCCeEEEEe--cCCCCeEEEEecCCCCeEEEEE---ecCceEEEEECCc--EEEEEec
Q psy505 83 IDTLEQIYENSQEDVCIVERLFSSSLVAVVS--LSSPRKLTVCHFKRGSEICNYS---FSNTILAVKLNRK--KEEEEDE 155 (161)
Q Consensus 83 ~~~~~~~~~~~~~~~~v~~~~fs~~~~~~~s--~~~d~~i~iWD~~~~~~i~~l~---~~~~V~~v~~~~~--~~vv~~~ 155 (161)
++++. .+..+. .+.+++|+|++..+++ |+.|+.|+|||+.+++...... +...|.+++|+|+ .++++..
T Consensus 294 ~~~~~-~~~~~~---~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~ 369 (401)
T 4aez_A 294 GARVN-TVDAGS---QVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAAS 369 (401)
T ss_dssp CCEEE-EEECSS---CEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECT
T ss_pred CCEEE-EEeCCC---cEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeC
Confidence 87664 333332 3778899998766666 6689999999999987665543 5689999999998 4555554
Q ss_pred c
Q psy505 156 E 156 (161)
Q Consensus 156 ~ 156 (161)
+
T Consensus 370 d 370 (401)
T 4aez_A 370 D 370 (401)
T ss_dssp T
T ss_pred C
Confidence 4
No 97
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.80 E-value=7.2e-18 Score=131.92 Aligned_cols=138 Identities=11% Similarity=0.142 Sum_probs=114.9
Q ss_pred CCceeEEeecCCCceEEEEcCCCCcceEEEEEcCC-CCceeeeeccCccceeee------eEEEecCCc-eEEEEeCCcC
Q psy505 13 NPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADN-LHAKTMIPAHDSPLAALA------SLSVGTKSG-YRLFSLNSID 84 (161)
Q Consensus 13 ~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~-~~~~~~l~~H~~~V~~l~------~lasgs~dg-iriwd~~~~~ 84 (161)
....+.+++++|++.++++++. ||.|++||+.+ ++.+..+.+|..+|.+++ +|++++.|| |++||+++++
T Consensus 174 ~~~~~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~ 251 (369)
T 3zwl_B 174 GLDAATVAGWSTKGKYIIAGHK--DGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQ 251 (369)
T ss_dssp TCCCEEEEEECGGGCEEEEEET--TSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred CccceeEEEEcCCCCEEEEEcC--CCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCc
Confidence 3337889999999999998776 99999999999 788899999999999999 899999999 9999999987
Q ss_pred ceeeEEeecCcceEEEEEeecCCeEEEEecCCCC--------------eEEEEecCCCCeEEEEE-ecCceEEEEECCc-
Q psy505 85 TLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPR--------------KLTVCHFKRGSEICNYS-FSNTILAVKLNRK- 148 (161)
Q Consensus 85 ~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~--------------~i~iWD~~~~~~i~~l~-~~~~V~~v~~~~~- 148 (161)
.+. .+. +.. .+..+.|+|++..++.++.++ .+++||..+++++..+. +.+.|.+++|+|+
T Consensus 252 ~~~-~~~-~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~ 327 (369)
T 3zwl_B 252 VLK-KYE-TDC--PLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQG 327 (369)
T ss_dssp EEE-EEE-CSS--CEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTS
T ss_pred eee-eec-CCC--CceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCC
Confidence 653 333 222 367888999887777766666 89999999999998887 6789999999997
Q ss_pred -EEEEEecc
Q psy505 149 -KEEEEDEE 156 (161)
Q Consensus 149 -~~vv~~~~ 156 (161)
.++.+..+
T Consensus 328 ~~l~s~~~d 336 (369)
T 3zwl_B 328 TSYASGGED 336 (369)
T ss_dssp SEEEEEETT
T ss_pred CEEEEEcCC
Confidence 56666544
No 98
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.80 E-value=2.7e-18 Score=140.22 Aligned_cols=146 Identities=8% Similarity=0.115 Sum_probs=112.4
Q ss_pred ceEEecCCCCCCceeEEeecCCCce-EEEEcCCCCcceEEEEEcCCCCc-------eeeeeccCccceeee-------eE
Q psy505 3 VLHTIRDTPPNPNGICCLCVNSDNC-YLAYPGSNSIGEVQIFDADNLHA-------KTMIPAHDSPLAALA-------SL 67 (161)
Q Consensus 3 ~~~~~~~~~~~~~~v~~~~~~~d~~-~la~~g~~~dg~v~iWd~~~~~~-------~~~l~~H~~~V~~l~-------~l 67 (161)
++.++ .. +...+++++++|++. ++++++. ||.|++||+.++.. ...+.+|...|.+++ +|
T Consensus 173 ~~~~~-~~--h~~~v~~l~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l 247 (430)
T 2xyi_A 173 PDLRL-RG--HQKEGYGLSWNPNLNGYLLSASD--DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLF 247 (430)
T ss_dssp CSEEE-EC--CSSCCCCEEECTTSTTEEEEECT--TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEE
T ss_pred CcEEe-cC--CCCCeEEEEeCCCCCCeEEEEeC--CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEE
Confidence 34455 33 334578899999888 8888665 99999999998432 466789999999998 89
Q ss_pred EEecCCc-eEEEEeCCcC---ceeeEEeecCcceEEEEEeecCCeE-EEEecCCCCeEEEEecCC-CCeEEEEE-ecCce
Q psy505 68 SVGTKSG-YRLFSLNSID---TLEQIYENSQEDVCIVERLFSSSLV-AVVSLSSPRKLTVCHFKR-GSEICNYS-FSNTI 140 (161)
Q Consensus 68 asgs~dg-iriwd~~~~~---~~~~~~~~~~~~~~v~~~~fs~~~~-~~~s~~~d~~i~iWD~~~-~~~i~~l~-~~~~V 140 (161)
++|+.|| |++||++++. ++ ..+..|.. .+.+++|+|++. .+++++.|++|+|||+++ ++++..+. +...|
T Consensus 248 ~s~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~--~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v 324 (430)
T 2xyi_A 248 GSVADDQKLMIWDTRNNNTSKPS-HTVDAHTA--EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEI 324 (430)
T ss_dssp EEEETTSEEEEEETTCSCSSSCS-EEEECCSS--CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCE
T ss_pred EEEeCCCeEEEEECCCCCCCcce-eEeecCCC--CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCE
Confidence 9999999 9999999863 33 34556654 377889999774 566777889999999998 56677776 67899
Q ss_pred EEEEECCcE---EEEEecc
Q psy505 141 LAVKLNRKK---EEEEDEE 156 (161)
Q Consensus 141 ~~v~~~~~~---~vv~~~~ 156 (161)
.+++|+|+. ++....+
T Consensus 325 ~~i~~sp~~~~~l~s~~~d 343 (430)
T 2xyi_A 325 FQVQWSPHNETILASSGTD 343 (430)
T ss_dssp EEEEECSSCTTEEEEEETT
T ss_pred EEEEECCCCCCEEEEEeCC
Confidence 999999974 5555433
No 99
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.80 E-value=6.2e-18 Score=129.96 Aligned_cols=135 Identities=14% Similarity=0.144 Sum_probs=110.0
Q ss_pred CceeEEeecCC-CceEEEEcCCCCcceEEEEEcCCCCceeeeec-cCccceeee-----eEEEecCCc-eEEEEeCCcCc
Q psy505 14 PNGICCLCVNS-DNCYLAYPGSNSIGEVQIFDADNLHAKTMIPA-HDSPLAALA-----SLSVGTKSG-YRLFSLNSIDT 85 (161)
Q Consensus 14 ~~~v~~~~~~~-d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~-H~~~V~~l~-----~lasgs~dg-iriwd~~~~~~ 85 (161)
...+.++++.| ++..+++++. ||.|++|| .++....+.. |..+|.+++ .+++|+.|| |++||++++++
T Consensus 142 ~~~v~~~~~~~~~~~~l~~~~~--d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~ 217 (313)
T 3odt_A 142 NASVWDAKVVSFSENKFLTASA--DKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDV 217 (313)
T ss_dssp SSCEEEEEEEETTTTEEEEEET--TSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCE
T ss_pred CCceeEEEEccCCCCEEEEEEC--CCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhh
Confidence 34577777776 8888888776 99999999 5577788887 999999998 788999999 99999999876
Q ss_pred eeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEEe-cCceEEEEECCc-EEEEEecc
Q psy505 86 LEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYSF-SNTILAVKLNRK-KEEEEDEE 156 (161)
Q Consensus 86 ~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~-~~~V~~v~~~~~-~~vv~~~~ 156 (161)
+ ..+.+|.. .+.+++|+|++. +++++.|+.|++||+++++++..+.. ...|.++.|+|+ .++++..+
T Consensus 218 ~-~~~~~~~~--~i~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d 286 (313)
T 3odt_A 218 L-RTYEGHES--FVYCIKLLPNGD-IVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDIIVGSSD 286 (313)
T ss_dssp E-EEEECCSS--CEEEEEECTTSC-EEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCEEEEETT
T ss_pred h-hhhhcCCc--eEEEEEEecCCC-EEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCEEEEeCC
Confidence 6 45567765 477889999984 66677899999999999999988874 579999999998 44444443
No 100
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.80 E-value=3.1e-18 Score=134.72 Aligned_cols=132 Identities=11% Similarity=0.128 Sum_probs=106.1
Q ss_pred CCceeEEeecCCC--ceEEEEcCCCCcceEEEEEcCCCC--ceeeeeccCccceeee--------eEEEecCCc-eEEEE
Q psy505 13 NPNGICCLCVNSD--NCYLAYPGSNSIGEVQIFDADNLH--AKTMIPAHDSPLAALA--------SLSVGTKSG-YRLFS 79 (161)
Q Consensus 13 ~~~~v~~~~~~~d--~~~la~~g~~~dg~v~iWd~~~~~--~~~~l~~H~~~V~~l~--------~lasgs~dg-iriwd 79 (161)
+...|.+++++|+ +.++++++. ||.|++||+.+++ .+..+.+|..+|.+++ +|++|+.|| |++||
T Consensus 54 h~~~v~~~~~~~~~~~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d 131 (379)
T 3jrp_A 54 HEGPVWRVDWAHPKFGTILASCSY--DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVE 131 (379)
T ss_dssp CSSCEEEEEECCGGGCSEEEEEET--TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEE
T ss_pred CCCcEEEEEeCCCCCCCEEEEecc--CCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEe
Confidence 4456888888876 889998776 9999999999987 7788899999999998 699999999 99999
Q ss_pred eCCcCcee-eEEeecCcceEEEEEeecC-------------CeEEEEecCCCCeEEEEecCCCCeE----EEEE-ecCce
Q psy505 80 LNSIDTLE-QIYENSQEDVCIVERLFSS-------------SLVAVVSLSSPRKLTVCHFKRGSEI----CNYS-FSNTI 140 (161)
Q Consensus 80 ~~~~~~~~-~~~~~~~~~~~v~~~~fs~-------------~~~~~~s~~~d~~i~iWD~~~~~~i----~~l~-~~~~V 140 (161)
++++.... ..+.+|.. .+.+++|+| ++..+++++.|+.|++||+++++.. ..+. |.+.|
T Consensus 132 ~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v 209 (379)
T 3jrp_A 132 FKENGTTSPIIIDAHAI--GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV 209 (379)
T ss_dssp CCTTSCCCEEEEECCTT--CEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE
T ss_pred cCCCCceeeEEecCCCC--ceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcE
Confidence 98874322 23445654 477889998 5677777778999999999887633 3343 56899
Q ss_pred EEEEECCc
Q psy505 141 LAVKLNRK 148 (161)
Q Consensus 141 ~~v~~~~~ 148 (161)
.+++|+|+
T Consensus 210 ~~~~~sp~ 217 (379)
T 3jrp_A 210 RDVAWSPT 217 (379)
T ss_dssp EEEEECCC
T ss_pred eEEEECCC
Confidence 99999987
No 101
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.80 E-value=1.7e-18 Score=149.83 Aligned_cols=147 Identities=11% Similarity=0.110 Sum_probs=121.4
Q ss_pred ceEEecCCCCCCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee------eEEEecCCc-e
Q psy505 3 VLHTIRDTPPNPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA------SLSVGTKSG-Y 75 (161)
Q Consensus 3 ~~~~~~~~~~~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~------~lasgs~dg-i 75 (161)
++.++ .. +...|.+++++|++.+||+++. ||.|++||+.+++.+..+.+|.++|++++ +|++|+.|| |
T Consensus 47 ~~~~~-~~--~~~~v~~~~~s~~~~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 121 (814)
T 3mkq_A 47 EVRSI-QV--TETPVRAGKFIARKNWIIVGSD--DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTV 121 (814)
T ss_dssp EEEEE-EC--CSSCEEEEEEEGGGTEEEEEET--TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred eEEEE-ec--CCCcEEEEEEeCCCCEEEEEeC--CCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEE
Confidence 44555 33 4445889999999999999776 99999999999999999999999999999 899999999 9
Q ss_pred EEEEeCCcCceeeEEeecCcceEEEEEeecC-CeEEEEecCCCCeEEEEecCCCCeEEEEEe--cCceEEEEECC--c--
Q psy505 76 RLFSLNSIDTLEQIYENSQEDVCIVERLFSS-SLVAVVSLSSPRKLTVCHFKRGSEICNYSF--SNTILAVKLNR--K-- 148 (161)
Q Consensus 76 riwd~~~~~~~~~~~~~~~~~~~v~~~~fs~-~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~--~~~V~~v~~~~--~-- 148 (161)
++||++++......+.+|.. .+.+++|+| ++..+++++.|++|++||+.+++....+.. ...|..+.|+| +
T Consensus 122 ~vw~~~~~~~~~~~~~~~~~--~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 199 (814)
T 3mkq_A 122 KLWNWENNWALEQTFEGHEH--FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP 199 (814)
T ss_dssp EEEEGGGTSEEEEEEECCSS--CEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCC
T ss_pred EEEECCCCceEEEEEcCCCC--cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCC
Confidence 99999887555567777765 477889999 888888888899999999999888777753 38899999988 5
Q ss_pred EEEEEecc
Q psy505 149 KEEEEDEE 156 (161)
Q Consensus 149 ~~vv~~~~ 156 (161)
.+++...+
T Consensus 200 ~l~~~~~d 207 (814)
T 3mkq_A 200 YMITASDD 207 (814)
T ss_dssp EEEEECTT
T ss_pred EEEEEeCC
Confidence 45554443
No 102
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.5e-18 Score=137.48 Aligned_cols=137 Identities=9% Similarity=0.034 Sum_probs=106.5
Q ss_pred eeEEeecCCCceEEEEcCCCCcceEEEEEcC---------CCCceeeee-ccCccceeee--------eEEEecCCc-eE
Q psy505 16 GICCLCVNSDNCYLAYPGSNSIGEVQIFDAD---------NLHAKTMIP-AHDSPLAALA--------SLSVGTKSG-YR 76 (161)
Q Consensus 16 ~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~---------~~~~~~~l~-~H~~~V~~l~--------~lasgs~dg-ir 76 (161)
.+.++.++|+ +++++. ||+|++|+.. +++.+..+. +|.++|.+++ +|++|+.|| |+
T Consensus 78 ~v~~~~~~~~---~~s~s~--D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~ 152 (343)
T 3lrv_A 78 NPRTGGEHPA---IISRGP--CNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIG 152 (343)
T ss_dssp CCCTTCCCCS---EEEECS--TTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEE
T ss_pred CceeeeeCCc---eEEecC--CCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEE
Confidence 4556677777 666555 9999999655 555555554 7878999987 799999999 99
Q ss_pred EEEeCCcCceeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeE-EEEE--ecCceEEEEECCc--EEE
Q psy505 77 LFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEI-CNYS--FSNTILAVKLNRK--KEE 151 (161)
Q Consensus 77 iwd~~~~~~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i-~~l~--~~~~V~~v~~~~~--~~v 151 (161)
+||+++++.+ ..+..+. ...+.+++|+|++..+++|+.|++|+|||+++++++ ..+. |.++|.+++|+|+ .++
T Consensus 153 ~wd~~~~~~~-~~~~~~~-~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~ 230 (343)
T 3lrv_A 153 FQSYEDDSQY-IVHSAKS-DVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMV 230 (343)
T ss_dssp EEESSSSCEE-EEECCCS-SCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEE
T ss_pred EEECCCCcEE-EEEecCC-CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEE
Confidence 9999998764 3443332 223778899999999999989999999999999987 6665 5789999999998 666
Q ss_pred EEecccee
Q psy505 152 EEDEEEEK 159 (161)
Q Consensus 152 v~~~~~~~ 159 (161)
...++.|+
T Consensus 231 s~~~~~v~ 238 (343)
T 3lrv_A 231 VECDQTVV 238 (343)
T ss_dssp EEESSBEE
T ss_pred EEeCCeEE
Confidence 66666553
No 103
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.79 E-value=1e-18 Score=139.74 Aligned_cols=109 Identities=17% Similarity=0.298 Sum_probs=88.2
Q ss_pred CceeEEeecCCCceEEEEc-CCCCcceEEEEEcCCCC----------------ceeeeeccCccceeee------eEEEe
Q psy505 14 PNGICCLCVNSDNCYLAYP-GSNSIGEVQIFDADNLH----------------AKTMIPAHDSPLAALA------SLSVG 70 (161)
Q Consensus 14 ~~~v~~~~~~~d~~~la~~-g~~~dg~v~iWd~~~~~----------------~~~~l~~H~~~V~~l~------~lasg 70 (161)
+.+++++++ .++|++ |.. ||.|++||+.+++ ++..+.+|.++|++++ +||+|
T Consensus 139 ~~~~~~~s~----~~la~~sg~~-~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~ 213 (355)
T 3vu4_A 139 FGGVCEFSN----GLLVYSNEFN-LGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATC 213 (355)
T ss_dssp EEEEEEEET----TEEEEEESSC-TTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CCceEEEEc----cEEEEeCCCc-CcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEE
Confidence 456666655 466665 563 9999999999876 2788999999999999 89999
Q ss_pred cCCc--eEEEEeCCcCceeeEEee-cCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCC
Q psy505 71 TKSG--YRLFSLNSIDTLEQIYEN-SQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGS 129 (161)
Q Consensus 71 s~dg--iriwd~~~~~~~~~~~~~-~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~ 129 (161)
+.|| |||||+++++++..+..+ |.. .+.+++|+|++..+++++.|++|+|||++++.
T Consensus 214 s~d~~~v~iwd~~~~~~~~~~~~g~h~~--~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 214 SQDGTIIRVFKTEDGVLVREFRRGLDRA--DVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp ETTCSEEEEEETTTCCEEEEEECTTCCS--CEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred eCCCCEEEEEECCCCcEEEEEEcCCCCC--cEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence 9998 999999999877544335 654 47889999999999999999999999998753
No 104
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.79 E-value=1.7e-19 Score=147.46 Aligned_cols=120 Identities=11% Similarity=0.121 Sum_probs=99.7
Q ss_pred CCCCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee-------eEEEecCCc-eEEEEeCC
Q psy505 11 PPNPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA-------SLSVGTKSG-YRLFSLNS 82 (161)
Q Consensus 11 ~~~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~-------~lasgs~dg-iriwd~~~ 82 (161)
+.....+++++++|++.++++++. ||.|++||++ ++.+..+.+|.++|++++ +|++|+.|+ |+|||+++
T Consensus 206 ~~~~~~~~~~~~~~~~~~l~~g~~--dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~ 282 (435)
T 4e54_B 206 DTINIWFCSLDVSASSRMVVTGDN--VGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ 282 (435)
T ss_dssp SSCSCCCCCEEEETTTTEEEEECS--SSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTT
T ss_pred CCCCccEEEEEECCCCCEEEEEeC--CCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEeccc
Confidence 344556788999999999998776 9999999997 567789999999999998 789999999 99999988
Q ss_pred cCceeeEE--eecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEE
Q psy505 83 IDTLEQIY--ENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYS 135 (161)
Q Consensus 83 ~~~~~~~~--~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~ 135 (161)
++....+. .+|.. .|.+++|+|++..+++++.|++|+|||++++++...+.
T Consensus 283 ~~~~~~~~~~~~h~~--~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~ 335 (435)
T 4e54_B 283 VRGKASFLYSLPHRH--PVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLI 335 (435)
T ss_dssp CCSSSCCSBCCBCSS--CEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEEC
T ss_pred ccccceEEEeeeccc--cccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEe
Confidence 65432222 35654 47789999999889999899999999999998877664
No 105
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.79 E-value=6.9e-19 Score=140.18 Aligned_cols=140 Identities=13% Similarity=0.136 Sum_probs=106.5
Q ss_pred CCCCCCceeEEeecCCCce-EEEEcCCCCcceEEEEEc----CCCC------ceeeeec----------cCccceeee--
Q psy505 9 DTPPNPNGICCLCVNSDNC-YLAYPGSNSIGEVQIFDA----DNLH------AKTMIPA----------HDSPLAALA-- 65 (161)
Q Consensus 9 ~~~~~~~~v~~~~~~~d~~-~la~~g~~~dg~v~iWd~----~~~~------~~~~l~~----------H~~~V~~l~-- 65 (161)
..+.+...|.+++++|+|. ++|+++. ||.|++||+ .+++ ....+.. |.++|.+++
T Consensus 40 ~~~~~~~~v~~~~~s~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 117 (425)
T 1r5m_A 40 KEIVKLDNIVSSTWNPLDESILAYGEK--NSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWS 117 (425)
T ss_dssp EEEEECSCCSEEEECSSCTTEEEEEET--BTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEEC
T ss_pred eeeeccCceEEEEECCCCCcEEEEecC--CceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEc
Confidence 3445556789999999999 9998776 999999999 8888 4555554 788999998
Q ss_pred ----eEEEecCCc-eEEEEeCCcCceeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEEe-cCc
Q psy505 66 ----SLSVGTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYSF-SNT 139 (161)
Q Consensus 66 ----~lasgs~dg-iriwd~~~~~~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~-~~~ 139 (161)
+|++|+.|| |++|| .+++.+ ..+.+|.. .+.+++|+|++..+++++.|+.|++||+++++.+..+.. ...
T Consensus 118 ~~~~~l~~~~~dg~i~i~~-~~~~~~-~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 193 (425)
T 1r5m_A 118 HDGNSIVTGVENGELRLWN-KTGALL-NVLNFHRA--PIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETG 193 (425)
T ss_dssp TTSSEEEEEETTSCEEEEE-TTSCEE-EEECCCCS--CEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---
T ss_pred CCCCEEEEEeCCCeEEEEe-CCCCee-eeccCCCc--cEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccC
Confidence 899999999 99999 555555 45566764 477889999888788877899999999999999888764 334
Q ss_pred ---------------eEEEEECCcEEEEEe
Q psy505 140 ---------------ILAVKLNRKKEEEED 154 (161)
Q Consensus 140 ---------------V~~v~~~~~~~vv~~ 154 (161)
|.++.|+|+..+++.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (425)
T 1r5m_A 194 GSSINAENHSGDGSLGVDVEWVDDDKFVIP 223 (425)
T ss_dssp ------------CCCBSCCEEEETTEEEEE
T ss_pred ccceeeccccCCcceeeEEEEcCCCEEEEE
Confidence 899999887544443
No 106
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.79 E-value=1.3e-18 Score=140.86 Aligned_cols=106 Identities=8% Similarity=0.023 Sum_probs=83.1
Q ss_pred CCCceEEEEcCCCCcceEEEEEcCCCCce-----eeeeccCccceeee--------------eEEEecCCc-eEEEEeCC
Q psy505 23 NSDNCYLAYPGSNSIGEVQIFDADNLHAK-----TMIPAHDSPLAALA--------------SLSVGTKSG-YRLFSLNS 82 (161)
Q Consensus 23 ~~d~~~la~~g~~~dg~v~iWd~~~~~~~-----~~l~~H~~~V~~l~--------------~lasgs~dg-iriwd~~~ 82 (161)
.+++.++|+++. |++|||||++++++. ..+.||++.|++|+ +|||||+|+ |||||+++
T Consensus 98 ~~~~~~las~~~--d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~ 175 (393)
T 4gq1_A 98 PVYSLFLACVCQ--DNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD 175 (393)
T ss_dssp CEEEEEEEEEET--TSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET
T ss_pred CCCCCEEEEEeC--CCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC
Confidence 446778888665 999999999988643 45789999999988 689999999 99999988
Q ss_pred cCceeeEEeecCcceEEEEEeecCCe-EEEEecCCCCeEEEEecCCCCeEEE
Q psy505 83 IDTLEQIYENSQEDVCIVERLFSSSL-VAVVSLSSPRKLTVCHFKRGSEICN 133 (161)
Q Consensus 83 ~~~~~~~~~~~~~~~~v~~~~fs~~~-~~~~s~~~d~~i~iWD~~~~~~i~~ 133 (161)
+.++..++ +|... +.+++|+|++ ..+++++.|++|++||+++++...+
T Consensus 176 ~~~~~~~~-~~~~~--v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~ 224 (393)
T 4gq1_A 176 EGPILAGY-PLSSP--GISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEE 224 (393)
T ss_dssp TEEEEEEE-ECSSC--EEEEEEETTEEEEEEEEETTSEEEEEETTCCC----
T ss_pred Cceeeeec-CCCCC--cEEEEECCCCCceEEecCCCCEEEEEECCCCccccc
Confidence 76664444 44433 6789999987 4688888999999999999876543
No 107
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.79 E-value=4.7e-18 Score=138.82 Aligned_cols=141 Identities=14% Similarity=0.177 Sum_probs=110.1
Q ss_pred CCCceeEEeecCC-CceEEEEcCCCCcceEEEEEcCCC---CceeeeeccCccceeee-------eEEEecCCc-eEEEE
Q psy505 12 PNPNGICCLCVNS-DNCYLAYPGSNSIGEVQIFDADNL---HAKTMIPAHDSPLAALA-------SLSVGTKSG-YRLFS 79 (161)
Q Consensus 12 ~~~~~v~~~~~~~-d~~~la~~g~~~dg~v~iWd~~~~---~~~~~l~~H~~~V~~l~-------~lasgs~dg-iriwd 79 (161)
.+...|.+++++| ++.++++++. ||.|++||++++ +++..+.+|..+|++++ +|++|+.|| |++||
T Consensus 229 ~h~~~v~~v~~~p~~~~~l~s~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd 306 (430)
T 2xyi_A 229 GHTAVVEDVAWHLLHESLFGSVAD--DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 306 (430)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEET--TSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred CCCCCEeeeEEeCCCCCEEEEEeC--CCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEe
Confidence 3455689999999 6677777665 999999999987 57888999999999999 689999999 99999
Q ss_pred eCCcCceeeEEeecCcceEEEEEeecCCe-EEEEecCCCCeEEEEecCC--------------CCeEEEEE-ecCceEEE
Q psy505 80 LNSIDTLEQIYENSQEDVCIVERLFSSSL-VAVVSLSSPRKLTVCHFKR--------------GSEICNYS-FSNTILAV 143 (161)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~v~~~~fs~~~-~~~~s~~~d~~i~iWD~~~--------------~~~i~~l~-~~~~V~~v 143 (161)
+++.......+.+|.. .+.++.|+|++ ..+++++.|++|+|||+.+ .+.+..+. |.+.|.++
T Consensus 307 ~~~~~~~~~~~~~h~~--~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 384 (430)
T 2xyi_A 307 LRNLKLKLHSFESHKD--EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDF 384 (430)
T ss_dssp TTCTTSCSEEEECCSS--CEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEE
T ss_pred CCCCCCCeEEeecCCC--CEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEE
Confidence 9884333356667765 47788999977 4566777889999999987 24555543 56789999
Q ss_pred EECCc---EEEEEecc
Q psy505 144 KLNRK---KEEEEDEE 156 (161)
Q Consensus 144 ~~~~~---~~vv~~~~ 156 (161)
+|+|+ .++.+..+
T Consensus 385 ~~~p~~~~~l~s~s~d 400 (430)
T 2xyi_A 385 SWNPNEPWIICSVSED 400 (430)
T ss_dssp EECSSSTTEEEEEETT
T ss_pred EECCCCCCEEEEEECC
Confidence 99998 34444444
No 108
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.79 E-value=1.8e-17 Score=134.62 Aligned_cols=139 Identities=15% Similarity=0.231 Sum_probs=110.6
Q ss_pred CCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCC----ceeeeeccCccceeee-------eEE--EecCCc-eEEE
Q psy505 13 NPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLH----AKTMIPAHDSPLAALA-------SLS--VGTKSG-YRLF 78 (161)
Q Consensus 13 ~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~----~~~~l~~H~~~V~~l~-------~la--sgs~dg-iriw 78 (161)
+...++.+.++|+|.++++++. ||.|++||..+++ .+..+..|...|.+++ +++ +|+.|+ ||+|
T Consensus 229 h~~~~~~~~~~~~g~~l~s~~~--D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iw 306 (420)
T 4gga_A 229 HSQEVCGLRWAPDGRHLASGGN--DNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIW 306 (420)
T ss_dssp CSSCEEEEEECTTSSEEEEEET--TSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEE
T ss_pred cccceeeeeecCCCCeeeeeec--cccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEE
Confidence 4456888899999999999776 9999999999875 3567789999999988 454 467899 9999
Q ss_pred EeCCcCceeeEEeecCcceEEEEEeecCCe--EEEEecCCCCeEEEEecCCCCeEEEEE-ecCceEEEEECCc--EEEEE
Q psy505 79 SLNSIDTLEQIYENSQEDVCIVERLFSSSL--VAVVSLSSPRKLTVCHFKRGSEICNYS-FSNTILAVKLNRK--KEEEE 153 (161)
Q Consensus 79 d~~~~~~~~~~~~~~~~~~~v~~~~fs~~~--~~~~s~~~d~~i~iWD~~~~~~i~~l~-~~~~V~~v~~~~~--~~vv~ 153 (161)
|++++++.. .+..|. .+.++.|+|++ +++++++.|++|+|||..+++++.++. |.+.|++++|+|+ .++.+
T Consensus 307 d~~t~~~~~-~~~~~~---~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~ 382 (420)
T 4gga_A 307 NVCSGACLS-AVDAHS---QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASA 382 (420)
T ss_dssp ETTTTEEEE-EEECSS---CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEE
T ss_pred eCCccccce-eecccc---ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence 999987653 444443 36677788754 455556789999999999999999997 7899999999997 56666
Q ss_pred eccc
Q psy505 154 DEEE 157 (161)
Q Consensus 154 ~~~~ 157 (161)
..|.
T Consensus 383 s~D~ 386 (420)
T 4gga_A 383 AADE 386 (420)
T ss_dssp ETTT
T ss_pred ecCC
Confidence 6653
No 109
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.7e-18 Score=138.46 Aligned_cols=140 Identities=13% Similarity=0.134 Sum_probs=114.7
Q ss_pred CCceeEEeecCCC-ceEEEEcCCCCcceEEEEEcCCCCceeeeecc------Cccceeee-------eEEEecCC----c
Q psy505 13 NPNGICCLCVNSD-NCYLAYPGSNSIGEVQIFDADNLHAKTMIPAH------DSPLAALA-------SLSVGTKS----G 74 (161)
Q Consensus 13 ~~~~v~~~~~~~d-~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H------~~~V~~l~-------~lasgs~d----g 74 (161)
+...+.+++++|+ +.++++++. ||.|++||+++++++..+..| ..+|.+++ +|++++.| .
T Consensus 164 ~~~~v~~~~~~~~~~~~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~ 241 (416)
T 2pm9_A 164 SVDEVISLAWNQSLAHVFASAGS--SNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPS 241 (416)
T ss_dssp SSCCCCEEEECSSCTTEEEEESS--SSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCC
T ss_pred CCCCeeEEEeCCCCCcEEEEEcC--CCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCce
Confidence 4556889999998 678888665 999999999999999999877 78999998 78889888 4
Q ss_pred eEEEEeCCcCceeeEEe-ecCcceEEEEEeecC-CeEEEEecCCCCeEEEEecCCCCeEEEEE-ecCceEEEEECCcE--
Q psy505 75 YRLFSLNSIDTLEQIYE-NSQEDVCIVERLFSS-SLVAVVSLSSPRKLTVCHFKRGSEICNYS-FSNTILAVKLNRKK-- 149 (161)
Q Consensus 75 iriwd~~~~~~~~~~~~-~~~~~~~v~~~~fs~-~~~~~~s~~~d~~i~iWD~~~~~~i~~l~-~~~~V~~v~~~~~~-- 149 (161)
|++||++++......+. +|.. .+.+++|+| ++..+++++.|++|++||+++++++..+. +...|.+++|+|+.
T Consensus 242 i~~~d~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 319 (416)
T 2pm9_A 242 ILIWDLRNANTPLQTLNQGHQK--GILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPD 319 (416)
T ss_dssp CCEEETTSTTSCSBCCCSCCSS--CEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTT
T ss_pred EEEEeCCCCCCCcEEeecCccC--ceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCC
Confidence 99999998743334555 6764 477889998 78778888889999999999999999887 57899999999964
Q ss_pred -EEEEecc
Q psy505 150 -EEEEDEE 156 (161)
Q Consensus 150 -~vv~~~~ 156 (161)
++.+..+
T Consensus 320 ~l~s~~~d 327 (416)
T 2pm9_A 320 LFACASFD 327 (416)
T ss_dssp EEEECCSS
T ss_pred EEEEEecC
Confidence 4444433
No 110
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.78 E-value=5.9e-18 Score=134.76 Aligned_cols=148 Identities=12% Similarity=0.094 Sum_probs=118.0
Q ss_pred ceEEecCCCCCCceeEEeecCCC----c---eEEEEcCCCCcceEEEEEcCCCCc-----eeeeecc-----Cccceeee
Q psy505 3 VLHTIRDTPPNPNGICCLCVNSD----N---CYLAYPGSNSIGEVQIFDADNLHA-----KTMIPAH-----DSPLAALA 65 (161)
Q Consensus 3 ~~~~~~~~~~~~~~v~~~~~~~d----~---~~la~~g~~~dg~v~iWd~~~~~~-----~~~l~~H-----~~~V~~l~ 65 (161)
++.++ .. +...|.+++++|+ | .++++++. ||.|++||+.+++. +..+.+| ..+|.+++
T Consensus 54 ~~~~~-~~--h~~~v~~~~~~~~~~~~g~~~~~l~s~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 128 (397)
T 1sq9_A 54 KSYSH-FV--HKSGLHHVDVLQAIERDAFELCLVATTSF--SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALK 128 (397)
T ss_dssp GEEEE-EC--CTTCEEEEEEEEEEETTTEEEEEEEEEET--TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEE
T ss_pred cceEE-ec--CCCcEEEEEEecccccCCccccEEEEEcC--CCCEEEEEccCCcccccccceeecccccccCCCcEEEEE
Confidence 45566 33 4456889999998 8 89998776 99999999999988 8999999 58898887
Q ss_pred ----------e-EEEecCCc-eEEEEeCC------cCcee----eEEee-----cCcceEEEEEeecCCeEEEEecCCCC
Q psy505 66 ----------S-LSVGTKSG-YRLFSLNS------IDTLE----QIYEN-----SQEDVCIVERLFSSSLVAVVSLSSPR 118 (161)
Q Consensus 66 ----------~-lasgs~dg-iriwd~~~------~~~~~----~~~~~-----~~~~~~v~~~~fs~~~~~~~s~~~d~ 118 (161)
+ |++|+.|| |++||+++ ++.+. ..+.+ +.+...+.+++|+|++ .+++++.|+
T Consensus 129 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg 207 (397)
T 1sq9_A 129 WGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNG 207 (397)
T ss_dssp EECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTS
T ss_pred EeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCC
Confidence 3 99999999 99999988 66553 03333 1222347788999999 888888999
Q ss_pred eEEEEecCCCCeEEEEEe-------cCceEEEEECCc--EEEEEecc
Q psy505 119 KLTVCHFKRGSEICNYSF-------SNTILAVKLNRK--KEEEEDEE 156 (161)
Q Consensus 119 ~i~iWD~~~~~~i~~l~~-------~~~V~~v~~~~~--~~vv~~~~ 156 (161)
.|++||+++++++..+.. ...|.+++|+|+ .+++...+
T Consensus 208 ~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d 254 (397)
T 1sq9_A 208 TVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS 254 (397)
T ss_dssp EEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEE
T ss_pred cEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecC
Confidence 999999999999988874 789999999987 55555554
No 111
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.78 E-value=1.1e-17 Score=133.81 Aligned_cols=134 Identities=12% Similarity=0.074 Sum_probs=102.1
Q ss_pred ceeEEeecCCCceEEEEcCCCCcceEEEEEcCCC-CceeeeeccCccceeee--eEEE--ecCCc-eEEEEeCCcC----
Q psy505 15 NGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNL-HAKTMIPAHDSPLAALA--SLSV--GTKSG-YRLFSLNSID---- 84 (161)
Q Consensus 15 ~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~-~~~~~l~~H~~~V~~l~--~las--gs~dg-iriwd~~~~~---- 84 (161)
..|.+++++|+...++. |+.|++||+.++ +.+..+.. ...+.+++ ++|. |+.|| |++||+++++
T Consensus 101 ~~v~~v~~~~~~~~~~~-----~~~i~i~d~~~~~~~~~~~~~-~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~ 174 (355)
T 3vu4_A 101 APVKDLFLSREFIVVSY-----GDVISVFKFGNPWKRITDDIR-FGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATT 174 (355)
T ss_dssp SCEEEEEECSSEEEEEE-----TTEEEEEESSTTCCBSSCCEE-EEEEEEEETTEEEEEESSCTTCEEEEECCC------
T ss_pred CceEEEEEcCCEEEEEE-----cCEEEEEECCCCceeeEEecc-CCceEEEEccEEEEeCCCcCcEEEEEECCCCCcccc
Confidence 35788888877644332 688999999888 77777766 33344444 5554 68899 9999998764
Q ss_pred -----------ceeeEEeecCcceEEEEEeecCCeEEEEecCCCCe-EEEEecCCCCeEEEEE---ecCceEEEEECCc-
Q psy505 85 -----------TLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRK-LTVCHFKRGSEICNYS---FSNTILAVKLNRK- 148 (161)
Q Consensus 85 -----------~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~-i~iWD~~~~~~i~~l~---~~~~V~~v~~~~~- 148 (161)
+....+.+|... |.+++|+|++..+++++.|++ |+|||+++++++..+. |...|.+++|+|+
T Consensus 175 ~~~~~~~~~~~p~~~~~~~h~~~--v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~ 252 (355)
T 3vu4_A 175 QDQGVQQKAILGKGVLIKAHTNP--IKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDG 252 (355)
T ss_dssp ------------CCEEECCCSSC--EEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTS
T ss_pred ccccccccccCcccEEEEccCCc--eEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCC
Confidence 112466788754 778899999999999999998 9999999999999997 7889999999997
Q ss_pred -EEEEEecc
Q psy505 149 -KEEEEDEE 156 (161)
Q Consensus 149 -~~vv~~~~ 156 (161)
.++.+..+
T Consensus 253 ~~l~s~s~d 261 (355)
T 3vu4_A 253 SKLAVVSDK 261 (355)
T ss_dssp CEEEEEETT
T ss_pred CEEEEEECC
Confidence 56666555
No 112
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.78 E-value=4.8e-18 Score=134.84 Aligned_cols=138 Identities=17% Similarity=0.300 Sum_probs=110.9
Q ss_pred CCceeEEeecCC-CceEEEEcCCCCcceEEEEEcCCCCceeeee-------------ccCccceeee-------eEEEec
Q psy505 13 NPNGICCLCVNS-DNCYLAYPGSNSIGEVQIFDADNLHAKTMIP-------------AHDSPLAALA-------SLSVGT 71 (161)
Q Consensus 13 ~~~~v~~~~~~~-d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~-------------~H~~~V~~l~-------~lasgs 71 (161)
+...|.+++++| ++.++|+++. ||.|++||+.+++....+. +|..+|.+++ +|++|+
T Consensus 42 h~~~v~~~~~s~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 119 (408)
T 4a11_B 42 HGGGINTLDIEPVEGRYMLSGGS--DGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSS 119 (408)
T ss_dssp CSSCEEEEEECTTTCCEEEEEET--TSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEE
T ss_pred cCCcEEEEEEecCCCCEEEEEcC--CCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEe
Confidence 556799999999 9999999776 9999999999988776664 6999999998 799999
Q ss_pred CCc-eEEEEeCCcCceeeEEeecCcceEEEEEeecC---CeEEEEecCCCCeEEEEecCCCCeEEEEE-ecCceEEEEEC
Q psy505 72 KSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSS---SLVAVVSLSSPRKLTVCHFKRGSEICNYS-FSNTILAVKLN 146 (161)
Q Consensus 72 ~dg-iriwd~~~~~~~~~~~~~~~~~~~v~~~~fs~---~~~~~~s~~~d~~i~iWD~~~~~~i~~l~-~~~~V~~v~~~ 146 (161)
.|| |++||+++++.. ..+. +... +.++.|+| ++..+++++.|+.|++||+++++++..+. +...|.+++|+
T Consensus 120 ~d~~i~iwd~~~~~~~-~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~ 195 (408)
T 4a11_B 120 FDKTLKVWDTNTLQTA-DVFN-FEET--VYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWS 195 (408)
T ss_dssp TTSEEEEEETTTTEEE-EEEE-CSSC--EEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEEC
T ss_pred CCCeEEEeeCCCCccc-eecc-CCCc--eeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEEC
Confidence 999 999999987655 3333 3323 55666765 44466666788999999999999988887 67899999999
Q ss_pred CcE---EEEEecc
Q psy505 147 RKK---EEEEDEE 156 (161)
Q Consensus 147 ~~~---~vv~~~~ 156 (161)
|+. +++...+
T Consensus 196 ~~~~~ll~~~~~d 208 (408)
T 4a11_B 196 PRYDYILATASAD 208 (408)
T ss_dssp SSCTTEEEEEETT
T ss_pred CCCCcEEEEEcCC
Confidence 984 5555544
No 113
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.78 E-value=1.9e-18 Score=142.66 Aligned_cols=134 Identities=10% Similarity=0.019 Sum_probs=105.0
Q ss_pred CceeEEeecCCCceEEEE---cCCCCcceEEEEEcCCC--------Cc---eeeeeccCccceeee-------eEEEecC
Q psy505 14 PNGICCLCVNSDNCYLAY---PGSNSIGEVQIFDADNL--------HA---KTMIPAHDSPLAALA-------SLSVGTK 72 (161)
Q Consensus 14 ~~~v~~~~~~~d~~~la~---~g~~~dg~v~iWd~~~~--------~~---~~~l~~H~~~V~~l~-------~lasgs~ 72 (161)
+..+.+++++|||.+||. +++. ||+|+|||+.++ ++ ...+.+|.++|++++ +||+|+.
T Consensus 92 ~~~v~~l~~spdg~~lav~~~sgs~-d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~ 170 (434)
T 2oit_A 92 KFPIHHLALSCDNLTLSACMMSSEY-GSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA 170 (434)
T ss_dssp SSCEEEEEECTTSCEEEEEEEETTT-EEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET
T ss_pred CCcccEEEEcCCCCEEEEEEeccCC-CceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC
Confidence 345899999999999994 3553 999999998765 22 456778999999998 7999999
Q ss_pred Cc-eEEEEeCCcCceeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEEe-c-------CceEEE
Q psy505 73 SG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYSF-S-------NTILAV 143 (161)
Q Consensus 73 dg-iriwd~~~~~~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~-~-------~~V~~v 143 (161)
|| |++||++++... ....+|.. .+.+++|+|++..+++++.|++|++||.+ ++....+.. . ..|.++
T Consensus 171 Dg~v~iwD~~~~~~~-~~~~~~~~--~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v 246 (434)
T 2oit_A 171 DGSIAVLQVTETVKV-CATLPSTV--AVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDV 246 (434)
T ss_dssp TSCEEEEEESSSEEE-EEEECGGG--CEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEE
T ss_pred CCeEEEEEcCCCcce-eeccCCCC--ceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEE
Confidence 99 999999987533 23345543 47789999999888888899999999998 666666542 1 279999
Q ss_pred EECCcEEEE
Q psy505 144 KLNRKKEEE 152 (161)
Q Consensus 144 ~~~~~~~vv 152 (161)
.|+++...+
T Consensus 247 ~w~~~~~~l 255 (434)
T 2oit_A 247 LWIGTYVFA 255 (434)
T ss_dssp EEEETTEEE
T ss_pred EEecCceEE
Confidence 999885444
No 114
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.78 E-value=3e-18 Score=149.68 Aligned_cols=131 Identities=12% Similarity=0.086 Sum_probs=107.0
Q ss_pred CCceeEEeecCCCceEEEEcCCCCcceEEEEEcC--CCCceeeeeccCccceeee--------eEEEecCCc-eEEEEeC
Q psy505 13 NPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDAD--NLHAKTMIPAHDSPLAALA--------SLSVGTKSG-YRLFSLN 81 (161)
Q Consensus 13 ~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~--~~~~~~~l~~H~~~V~~l~--------~lasgs~dg-iriwd~~ 81 (161)
|...|.+++++|+|.++++++. ||+|+|||+. +++++..+.+|.++|++++ +|++|+.|| |++||++
T Consensus 8 H~~~V~~l~~s~dg~~latg~~--dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~ 85 (753)
T 3jro_A 8 HNELIHDAVLDYYGKRLATCSS--DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE 85 (753)
T ss_dssp CCCCEEEECCCSSSCCEEEEET--TTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEE
T ss_pred CcceeEEEEECCCCCeEEEEEC--CCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECC
Confidence 4456999999999999999776 9999999998 5567889999999999998 799999999 9999998
Q ss_pred CcCc-eeeEEeecCcceEEEEEeecCC--eEEEEecCCCCeEEEEecCCCCeE--EEE-EecCceEEEEECC
Q psy505 82 SIDT-LEQIYENSQEDVCIVERLFSSS--LVAVVSLSSPRKLTVCHFKRGSEI--CNY-SFSNTILAVKLNR 147 (161)
Q Consensus 82 ~~~~-~~~~~~~~~~~~~v~~~~fs~~--~~~~~s~~~d~~i~iWD~~~~~~i--~~l-~~~~~V~~v~~~~ 147 (161)
+++. ....+.+|.. .+.+++|+|+ +..+++++.|++|++||++++... ..+ .+...|.++.|+|
T Consensus 86 ~~~~~~~~~~~~h~~--~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p 155 (753)
T 3jro_A 86 NGRWSQIAVHAVHSA--SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP 155 (753)
T ss_dssp TTEEEEEEEECCCSS--CEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECC
T ss_pred CCcccccccccCCCC--CeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecC
Confidence 8751 1234455654 4778889998 777788888999999999988433 233 3678999999998
No 115
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.78 E-value=4.6e-17 Score=125.55 Aligned_cols=139 Identities=14% Similarity=0.230 Sum_probs=107.3
Q ss_pred CCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCc----eeeeeccCccceeee---------eEEEecCCc-eEEE
Q psy505 13 NPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHA----KTMIPAHDSPLAALA---------SLSVGTKSG-YRLF 78 (161)
Q Consensus 13 ~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~----~~~l~~H~~~V~~l~---------~lasgs~dg-iriw 78 (161)
+...+..+++++++.++++++. ||+|++||+++++. ......|.++|.+++ .+++|+.++ |++|
T Consensus 149 ~~~~~~~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lw 226 (318)
T 4ggc_A 149 HSQEVCGLRWAPDGRHLASGGN--DNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIW 226 (318)
T ss_dssp CSSCEEEEEECTTSSEEEEEET--TSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEE
T ss_pred ccCceEEEEEcCCCCEEEEEec--CcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEE
Confidence 3445778888899999998776 99999999998764 345667888888877 457888899 9999
Q ss_pred EeCCcCceeeEEeecCcceEEEEEeecC--CeEEEEecCCCCeEEEEecCCCCeEEEEE-ecCceEEEEECCc--EEEEE
Q psy505 79 SLNSIDTLEQIYENSQEDVCIVERLFSS--SLVAVVSLSSPRKLTVCHFKRGSEICNYS-FSNTILAVKLNRK--KEEEE 153 (161)
Q Consensus 79 d~~~~~~~~~~~~~~~~~~~v~~~~fs~--~~~~~~s~~~d~~i~iWD~~~~~~i~~l~-~~~~V~~v~~~~~--~~vv~ 153 (161)
|.+++... ... .+... +..+.|+| +.+++++++.|++|+|||+++++++.++. |.+.|.+++|+|+ .|+.+
T Consensus 227 d~~~~~~~-~~~-~~~~~--v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~ 302 (318)
T 4ggc_A 227 NVCSGACL-SAV-DAHSQ--VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASA 302 (318)
T ss_dssp ETTTCCEE-EEE-ECSSC--EEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEE
T ss_pred eccccccc-ccc-cceee--eeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence 99887644 222 33333 45556665 55666777789999999999999999997 7899999999998 56666
Q ss_pred eccc
Q psy505 154 DEEE 157 (161)
Q Consensus 154 ~~~~ 157 (161)
..|.
T Consensus 303 s~D~ 306 (318)
T 4ggc_A 303 AADE 306 (318)
T ss_dssp ETTT
T ss_pred ecCC
Confidence 6653
No 116
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.77 E-value=1.1e-17 Score=130.83 Aligned_cols=144 Identities=11% Similarity=0.096 Sum_probs=106.7
Q ss_pred CCceeEEeecCCCceEEEEcCCC--CcceEEEEEcCCCCceeee-eccCccceeee---------eEEEecCCc-eEEEE
Q psy505 13 NPNGICCLCVNSDNCYLAYPGSN--SIGEVQIFDADNLHAKTMI-PAHDSPLAALA---------SLSVGTKSG-YRLFS 79 (161)
Q Consensus 13 ~~~~v~~~~~~~d~~~la~~g~~--~dg~v~iWd~~~~~~~~~l-~~H~~~V~~l~---------~lasgs~dg-iriwd 79 (161)
+...|.+++++|++..++++|+. .||.|+|||+.+++..... .+|.++|.+++ +|++|+.|| |++||
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd 96 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWN 96 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEEC
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEe
Confidence 56679999999999666555541 1899999999998876554 38999999997 599999999 99999
Q ss_pred eCCcCceeeEEeecCcceEEEEE----eecCCeEEEEecCCCCeEEEEecCCCC-eEEEEEe-c----CceEEEE----E
Q psy505 80 LNSIDTLEQIYENSQEDVCIVER----LFSSSLVAVVSLSSPRKLTVCHFKRGS-EICNYSF-S----NTILAVK----L 145 (161)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~v~~~----~fs~~~~~~~s~~~d~~i~iWD~~~~~-~i~~l~~-~----~~V~~v~----~ 145 (161)
+++++.....+.+|...+..+.. +|+|++..+++++.|++|++||+++++ .+..+.. . ..|.++. |
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 176 (357)
T 3i2n_A 97 LEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAY 176 (357)
T ss_dssp TTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCC
T ss_pred CCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEecc
Confidence 99887233566778765433322 567888788888889999999999987 6666652 2 3899998 5
Q ss_pred CCc--EEEEEecc
Q psy505 146 NRK--KEEEEDEE 156 (161)
Q Consensus 146 ~~~--~~vv~~~~ 156 (161)
+|+ .+++...+
T Consensus 177 ~~~~~~l~~~~~d 189 (357)
T 3i2n_A 177 NQEERVVCAGYDN 189 (357)
T ss_dssp C-CCCEEEEEETT
T ss_pred CCCCCEEEEEccC
Confidence 665 45555443
No 117
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.77 E-value=7e-18 Score=143.98 Aligned_cols=134 Identities=12% Similarity=0.090 Sum_probs=102.1
Q ss_pred CceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCc-------eeee----eccCccceeee----eEEEecCCc-eEE
Q psy505 14 PNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHA-------KTMI----PAHDSPLAALA----SLSVGTKSG-YRL 77 (161)
Q Consensus 14 ~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~-------~~~l----~~H~~~V~~l~----~lasgs~dg-iri 77 (161)
..++.+++|||||.+||+++. ||+|+|||+.+++. +.++ .+|.+.|.+++ -+++++.|+ +|+
T Consensus 129 ~~sv~svafSPDG~~LAsgs~--DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdgLaass~D~tVrl 206 (588)
T 2j04_A 129 SRTYHCFEWNPIESSIVVGNE--DGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDVLVAALSNNSVFS 206 (588)
T ss_dssp TTCEEEEEECSSSSCEEEEET--TSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTEEEEEETTCCEEE
T ss_pred cccEEEEEEcCCCCEEEEEcC--CCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCcEEEEeCCCeEEE
Confidence 347999999999999999886 99999999999863 5777 77889999998 566777788 999
Q ss_pred EEeCCcCce--eeEE-eecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEE-EEEecCceEEEEE--CCcEEE
Q psy505 78 FSLNSIDTL--EQIY-ENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEIC-NYSFSNTILAVKL--NRKKEE 151 (161)
Q Consensus 78 wd~~~~~~~--~~~~-~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~-~l~~~~~V~~v~~--~~~~~v 151 (161)
||+.++... ...+ .+|.. .|.+++|+. ..+++++ +++|++||...++... .+.|.+.|..++| +|++..
T Consensus 207 Wd~~~~~~~~~~~tL~~~h~~--~V~svaFsg--~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~ 281 (588)
T 2j04_A 207 MTVSASSHQPVSRMIQNASRR--KITDLKIVD--YKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTI 281 (588)
T ss_dssp ECCCSSSSCCCEEEEECCCSS--CCCCEEEET--TEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEE
T ss_pred EECCCCccccceeeecccccC--cEEEEEEEC--CEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCE
Confidence 999876632 1233 36653 467888883 3445554 5899999999887633 3357889999999 999644
Q ss_pred EEe
Q psy505 152 EED 154 (161)
Q Consensus 152 v~~ 154 (161)
++.
T Consensus 282 La~ 284 (588)
T 2j04_A 282 LLM 284 (588)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 118
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.76 E-value=5.7e-17 Score=124.52 Aligned_cols=144 Identities=15% Similarity=0.144 Sum_probs=112.1
Q ss_pred CcceEEecCCCCCCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee------eEEEecCCc
Q psy505 1 MKVLHTIRDTPPNPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA------SLSVGTKSG 74 (161)
Q Consensus 1 ~~~~~~~~~~~~~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~------~lasgs~dg 74 (161)
+++++++ ..|. ..|.++++ |++.++++++. ||.|++||+.+++....+..|..+|.+++ +|++|+.||
T Consensus 8 ~~~~~~l-~~h~--~~v~~~~~-~~~~~l~s~~~--dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 81 (313)
T 3odt_A 8 YQLSATL-KGHD--QDVRDVVA-VDDSKVASVSR--DGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDT 81 (313)
T ss_dssp CEEEEEE-CCCS--SCEEEEEE-EETTEEEEEET--TSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTS
T ss_pred HHHHHHh-hCCC--CCcEEEEe-cCCCEEEEEEc--CCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCC
Confidence 3577788 5554 45888888 88889998776 99999999999999999999999999999 899999999
Q ss_pred -eEEEEeCCcC--ceeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEE-ecCceEEEEECC---
Q psy505 75 -YRLFSLNSID--TLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYS-FSNTILAVKLNR--- 147 (161)
Q Consensus 75 -iriwd~~~~~--~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~-~~~~V~~v~~~~--- 147 (161)
+++|++.... .....+.+|... +.++.|+++.++. ++.|+.|++|| .++.+..+. +...|.++.|+|
T Consensus 82 ~i~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~l~~--~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~ 155 (313)
T 3odt_A 82 MINGVPLFATSGEDPLYTLIGHQGN--VCSLSFQDGVVIS--GSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSE 155 (313)
T ss_dssp CEEEEETTCCTTSCC-CEECCCSSC--EEEEEEETTEEEE--EETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTT
T ss_pred eEEEEEeeecCCCCcccchhhcccC--EEEEEecCCEEEE--EeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCC
Confidence 9999987643 112345566644 6778887776544 44688999999 677777776 678999999955
Q ss_pred cEEEEEecc
Q psy505 148 KKEEEEDEE 156 (161)
Q Consensus 148 ~~~vv~~~~ 156 (161)
+.++++..+
T Consensus 156 ~~l~~~~~d 164 (313)
T 3odt_A 156 NKFLTASAD 164 (313)
T ss_dssp TEEEEEETT
T ss_pred CEEEEEECC
Confidence 467766655
No 119
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.76 E-value=2.9e-17 Score=130.30 Aligned_cols=137 Identities=10% Similarity=0.174 Sum_probs=106.1
Q ss_pred eeEEeecCC---CceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee-------eEEEecCCc-eEEEEeCCcC
Q psy505 16 GICCLCVNS---DNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA-------SLSVGTKSG-YRLFSLNSID 84 (161)
Q Consensus 16 ~v~~~~~~~---d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~-------~lasgs~dg-iriwd~~~~~ 84 (161)
.+.+++++| ++.++++++. ||.|++||+.+++++..+.+|.++|.+++ +|++|+.|| |++||++++.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~ 220 (408)
T 4a11_B 143 TVYSHHMSPVSTKHCLVAVGTR--GPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRAS 220 (408)
T ss_dssp CEEEEEECSSCSSCCEEEEEES--SSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSS
T ss_pred ceeeeEeecCCCCCcEEEEEcC--CCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCC
Confidence 455566655 5558888765 99999999999999999999999999998 589999999 9999998765
Q ss_pred ceeeEE---------------eecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCC---------------------
Q psy505 85 TLEQIY---------------ENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRG--------------------- 128 (161)
Q Consensus 85 ~~~~~~---------------~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~--------------------- 128 (161)
.....+ .+|.. .+.+++|+|++..+++++.|+.|++||++++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (408)
T 4a11_B 221 GCLITLDQHNGKKSQAVESANTAHNG--KVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFT 298 (408)
T ss_dssp CCSEECCTTTTCSCCCTTTSSCSCSS--CEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCE
T ss_pred cccccccccccccceeeccccccccC--ceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeE
Confidence 322232 23443 4778999999888888778888999988764
Q ss_pred --------------------------CeEEEEE-ecCceEEEEECCc--EEEEEecc
Q psy505 129 --------------------------SEICNYS-FSNTILAVKLNRK--KEEEEDEE 156 (161)
Q Consensus 129 --------------------------~~i~~l~-~~~~V~~v~~~~~--~~vv~~~~ 156 (161)
+++..+. |.+.|.+++|+|+ .++....+
T Consensus 299 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 355 (408)
T 4a11_B 299 VSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRD 355 (408)
T ss_dssp ECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETT
T ss_pred EecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCC
Confidence 4455555 5689999999997 36666554
No 120
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.75 E-value=3.2e-17 Score=136.92 Aligned_cols=139 Identities=14% Similarity=0.094 Sum_probs=115.3
Q ss_pred CCceeEEeecCCCceEEEEcCCCCc----ceEEEEEcCCCCceeeeeccCccceeee-------eEEEecCCc-eEEEEe
Q psy505 13 NPNGICCLCVNSDNCYLAYPGSNSI----GEVQIFDADNLHAKTMIPAHDSPLAALA-------SLSVGTKSG-YRLFSL 80 (161)
Q Consensus 13 ~~~~v~~~~~~~d~~~la~~g~~~d----g~v~iWd~~~~~~~~~l~~H~~~V~~l~-------~lasgs~dg-iriwd~ 80 (161)
+...+.+++++|++.++++++. | +.|++|| +++.+..+.+|...|++++ ++++|+.|| |++||+
T Consensus 115 ~~~~v~~~~~s~~~~~l~~~~~--~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~ 190 (615)
T 1pgu_A 115 LAGPISDISWDFEGRRLCVVGE--GRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQG 190 (615)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEET
T ss_pred ccccEEEEEEeCCCCEEEEecc--CCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeC
Confidence 3456999999999999998775 5 7888888 6788999999999999999 699999999 999999
Q ss_pred CCcCceeeEEeecCc-ceEEEEEeecCC-eEEEEecCCCCeEEEEecCCCCeEEEE-----EecCceEEEEEC-CcEEEE
Q psy505 81 NSIDTLEQIYENSQE-DVCIVERLFSSS-LVAVVSLSSPRKLTVCHFKRGSEICNY-----SFSNTILAVKLN-RKKEEE 152 (161)
Q Consensus 81 ~~~~~~~~~~~~~~~-~~~v~~~~fs~~-~~~~~s~~~d~~i~iWD~~~~~~i~~l-----~~~~~V~~v~~~-~~~~vv 152 (161)
++++.+ ..+.+|.. ...+.+++|+|+ +..+++++.|+.|++||+++++++..+ .+...|.++.|+ .+.+++
T Consensus 191 ~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ 269 (615)
T 1pgu_A 191 PPFKFS-ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFAT 269 (615)
T ss_dssp TTBEEE-EEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEE
T ss_pred CCccee-eeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEcCCCEEEE
Confidence 887755 45566654 114778899999 888888878999999999999999998 678899999996 336666
Q ss_pred Eecc
Q psy505 153 EDEE 156 (161)
Q Consensus 153 ~~~~ 156 (161)
+..+
T Consensus 270 ~~~d 273 (615)
T 1pgu_A 270 VGAD 273 (615)
T ss_dssp EETT
T ss_pred EcCC
Confidence 6655
No 121
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.75 E-value=4e-17 Score=142.57 Aligned_cols=139 Identities=12% Similarity=0.126 Sum_probs=109.9
Q ss_pred ceEEecCCCCCCceeEEeecCCC--ceEEEEcCCCCcceEEEEEcCCCC--ceeeeeccCccceeee--------eEEEe
Q psy505 3 VLHTIRDTPPNPNGICCLCVNSD--NCYLAYPGSNSIGEVQIFDADNLH--AKTMIPAHDSPLAALA--------SLSVG 70 (161)
Q Consensus 3 ~~~~~~~~~~~~~~v~~~~~~~d--~~~la~~g~~~dg~v~iWd~~~~~--~~~~l~~H~~~V~~l~--------~lasg 70 (161)
++.++ .. +...|.+++++|+ +.++++++. ||+|++||+.+++ .+..+.+|..+|.+++ ++++|
T Consensus 45 ~~~~l-~~--h~~~V~~l~~s~~~~~~~l~s~s~--Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sg 119 (753)
T 3jro_A 45 LIDTL-TG--HEGPVWRVDWAHPKFGTILASCSY--DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVA 119 (753)
T ss_dssp EEEEE-CC--CSSCEEEEEECCTTSCSEEEEEET--TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEE
T ss_pred cceec-cC--CcCceEEEEecCCCCCCEEEEEeC--CCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEE
Confidence 34455 33 4456888988877 899998776 9999999999987 7788899999999998 79999
Q ss_pred cCCc-eEEEEeCCcCce-eeEEeecCcceEEEEEeecC-------------CeEEEEecCCCCeEEEEecCCCC----eE
Q psy505 71 TKSG-YRLFSLNSIDTL-EQIYENSQEDVCIVERLFSS-------------SLVAVVSLSSPRKLTVCHFKRGS----EI 131 (161)
Q Consensus 71 s~dg-iriwd~~~~~~~-~~~~~~~~~~~~v~~~~fs~-------------~~~~~~s~~~d~~i~iWD~~~~~----~i 131 (161)
+.|| |++||++++... ...+.+|.. .+.++.|+| ++..+++++.|++|++||++++. ++
T Consensus 120 s~dg~I~vwdl~~~~~~~~~~~~~~~~--~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 197 (753)
T 3jro_A 120 SSDGKVSVVEFKENGTTSPIIIDAHAI--GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE 197 (753)
T ss_dssp ETTSEEEEEECCSSSCCCCEEEECCSS--CEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEE
T ss_pred eCCCcEEEEEeecCCCcceeEeecCCC--ceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceee
Confidence 9999 999999887432 234456654 477888998 46677777789999999999874 44
Q ss_pred EEEE-ecCceEEEEECCc
Q psy505 132 CNYS-FSNTILAVKLNRK 148 (161)
Q Consensus 132 ~~l~-~~~~V~~v~~~~~ 148 (161)
..+. |.+.|.+++|+|+
T Consensus 198 ~~~~~h~~~V~~l~~sp~ 215 (753)
T 3jro_A 198 STLEGHSDWVRDVAWSPT 215 (753)
T ss_dssp EEECCCSSCEEEEEECCC
T ss_pred eeecCCCCcEEEEEeccC
Confidence 4444 5789999999988
No 122
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.74 E-value=1.1e-16 Score=133.76 Aligned_cols=139 Identities=10% Similarity=0.060 Sum_probs=112.2
Q ss_pred CCceeEEeecCCCce-EEEEcCCCCcceEEEEEcCCCCceeeeeccCc---cceeee-------eEEEecCCc-eEEEEe
Q psy505 13 NPNGICCLCVNSDNC-YLAYPGSNSIGEVQIFDADNLHAKTMIPAHDS---PLAALA-------SLSVGTKSG-YRLFSL 80 (161)
Q Consensus 13 ~~~~v~~~~~~~d~~-~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~---~V~~l~-------~lasgs~dg-iriwd~ 80 (161)
+...+.+++++|++. .+++++. ||.|++||+.+++++..+.+|.+ +|++++ +|++|+.|| |++||+
T Consensus 159 ~~~~v~~~~~~~~~~~~l~~~~~--d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~ 236 (615)
T 1pgu_A 159 HSQRINACHLKQSRPMRSMTVGD--DGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG 236 (615)
T ss_dssp CSSCEEEEEECSSSSCEEEEEET--TTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEET
T ss_pred CCccEEEEEECCCCCcEEEEEeC--CCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEEC
Confidence 445689999999997 6777655 99999999999999999999999 999988 799999999 999999
Q ss_pred CCcCceeeEEe---ecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEEec-----CceEEEEECC-cEEE
Q psy505 81 NSIDTLEQIYE---NSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYSFS-----NTILAVKLNR-KKEE 151 (161)
Q Consensus 81 ~~~~~~~~~~~---~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~~-----~~V~~v~~~~-~~~v 151 (161)
++++.+..+.. +|... +.++.|+ ++..+++++.|+.|++||+++++++..+... ..+.++.|+. +.++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~--v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 313 (615)
T 1pgu_A 237 KSGEFLKYIEDDQEPVQGG--IFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRII 313 (615)
T ss_dssp TTCCEEEECCBTTBCCCSC--EEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEE
T ss_pred CCCCEeEEecccccccCCc--eEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEE
Confidence 99886643324 66544 6778888 7777777778899999999999999888754 6788888843 3555
Q ss_pred EEecc
Q psy505 152 EEDEE 156 (161)
Q Consensus 152 v~~~~ 156 (161)
+...+
T Consensus 314 ~~~~~ 318 (615)
T 1pgu_A 314 SLSLD 318 (615)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 54443
No 123
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.73 E-value=4.5e-16 Score=123.98 Aligned_cols=138 Identities=13% Similarity=0.114 Sum_probs=107.6
Q ss_pred cceEEecCCCCCCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee-------eEEEecCCc
Q psy505 2 KVLHTIRDTPPNPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA-------SLSVGTKSG 74 (161)
Q Consensus 2 ~~~~~~~~~~~~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~-------~lasgs~dg 74 (161)
++++++ ..+ ..+.+++++|||.+++++++. |++|++||+.+++.+..+..|. .+.+++ ++++++.++
T Consensus 23 ~~~~~~-~~~---~~~~~~~~s~dg~~l~~~~~~-d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~ 96 (391)
T 1l0q_A 23 KVTATI-PVG---SNPMGAVISPDGTKVYVANAH-SNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASS 96 (391)
T ss_dssp EEEEEE-ECS---SSEEEEEECTTSSEEEEEEGG-GTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTT
T ss_pred eEEEEe-ecC---CCcceEEECCCCCEEEEECCC-CCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCC
Confidence 345555 333 347889999999887555543 9999999999999999998776 788887 446677778
Q ss_pred -eEEEEeCCcCceeeEEeecCcceEEEEEeecCCeEEE-EecCCCCeEEEEecCCCCeEEEEEecCceEEEEECCcE
Q psy505 75 -YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAV-VSLSSPRKLTVCHFKRGSEICNYSFSNTILAVKLNRKK 149 (161)
Q Consensus 75 -iriwd~~~~~~~~~~~~~~~~~~~v~~~~fs~~~~~~-~s~~~d~~i~iWD~~~~~~i~~l~~~~~V~~v~~~~~~ 149 (161)
|++||+++++.+ ..+..+. .+.+++|+|++..+ ++++.|+.|++||+++++++..+.....+.++.|+|+.
T Consensus 97 ~v~v~d~~~~~~~-~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg 169 (391)
T 1l0q_A 97 TLSVIDTTSNTVA-GTVKTGK---SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDG 169 (391)
T ss_dssp EEEEEETTTTEEE-EEEECSS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTS
T ss_pred EEEEEECCCCeEE-EEEeCCC---CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCC
Confidence 999999988755 3444443 25788999987544 66778899999999999998888877888999999983
No 124
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.71 E-value=2.6e-16 Score=126.92 Aligned_cols=133 Identities=8% Similarity=-0.040 Sum_probs=105.6
Q ss_pred eEEeecCCCceEEEEcCCCCcceEEEEEcCCCCcee-----eeeccCccceeee------eEEEecCCc-eEEEEeCCcC
Q psy505 17 ICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKT-----MIPAHDSPLAALA------SLSVGTKSG-YRLFSLNSID 84 (161)
Q Consensus 17 v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~-----~l~~H~~~V~~l~------~lasgs~dg-iriwd~~~~~ 84 (161)
+.+++++|++.++++++. |+.|++||+.+++.+. .+.+|.+.|++++ ++++++.|+ |++||+++++
T Consensus 125 ~~~~~~s~~~~~~~~~~~--~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~ 202 (433)
T 3bws_A 125 PKSVRFIDNTRLAIPLLE--DEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA 202 (433)
T ss_dssp BCCCEESSSSEEEEEBTT--SSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred ceEEEEeCCCeEEEEeCC--CCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence 446778887777777554 8999999999998877 5668999999998 889999999 9999999887
Q ss_pred ceeeEEeecCcceEEEEEeecCCeEEE-EecCCCCeEEEEecCCCCeEEEEEecCceEEEEECCc--EEEEEe
Q psy505 85 TLEQIYENSQEDVCIVERLFSSSLVAV-VSLSSPRKLTVCHFKRGSEICNYSFSNTILAVKLNRK--KEEEED 154 (161)
Q Consensus 85 ~~~~~~~~~~~~~~v~~~~fs~~~~~~-~s~~~d~~i~iWD~~~~~~i~~l~~~~~V~~v~~~~~--~~vv~~ 154 (161)
.+ ..+..|.. .+.+++|+|++..+ ++++.|+.|++||+++++.+..+.....+.+++|+|+ .++++.
T Consensus 203 ~~-~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~ 272 (433)
T 3bws_A 203 YK-ATVDLTGK--WSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQ 272 (433)
T ss_dssp EE-EEEECSSS--SEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEE
T ss_pred EE-EEEcCCCC--CeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEE
Confidence 65 34455543 36788899876433 5666788999999999998888777778999999998 344444
No 125
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.71 E-value=1.8e-15 Score=120.46 Aligned_cols=133 Identities=9% Similarity=0.017 Sum_probs=106.6
Q ss_pred eeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee-------eEEEecCCc-eEEEEeCCcCcee
Q psy505 16 GICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA-------SLSVGTKSG-YRLFSLNSIDTLE 87 (161)
Q Consensus 16 ~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~-------~lasgs~dg-iriwd~~~~~~~~ 87 (161)
.+.+++++|||.++++++.. |+.|++||+.+++.+..+..|. .+.+++ ++++++.|+ |++||+++++..
T Consensus 75 ~v~~~~~spdg~~l~~~~~~-~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~- 151 (391)
T 1l0q_A 75 SPQGVAVSPDGKQVYVTNMA-SSTLSVIDTTSNTVAGTVKTGK-SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVI- 151 (391)
T ss_dssp SEEEEEECTTSSEEEEEETT-TTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE-
T ss_pred CccceEECCCCCEEEEEECC-CCEEEEEECCCCeEEEEEeCCC-CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE-
Confidence 68899999999988776763 8999999999999988888765 467777 447888899 999999988755
Q ss_pred eEEeecCcceEEEEEeecCCeEEE-EecCCCCeEEEEecCCCCeEEEEEecCceEEEEECCc--EEEEEe
Q psy505 88 QIYENSQEDVCIVERLFSSSLVAV-VSLSSPRKLTVCHFKRGSEICNYSFSNTILAVKLNRK--KEEEED 154 (161)
Q Consensus 88 ~~~~~~~~~~~v~~~~fs~~~~~~-~s~~~d~~i~iWD~~~~~~i~~l~~~~~V~~v~~~~~--~~vv~~ 154 (161)
..+..+.. +..++|+|++..+ ++++.++.|++||+++++++..+.+...+.+++|+|+ .+++..
T Consensus 152 ~~~~~~~~---~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~ 218 (391)
T 1l0q_A 152 NTVSVGRS---PKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTN 218 (391)
T ss_dssp EEEECCSS---EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEE
T ss_pred EEEecCCC---cceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEe
Confidence 44444442 4678899987544 6667789999999999999888888889999999997 455554
No 126
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.70 E-value=2.1e-16 Score=123.24 Aligned_cols=138 Identities=14% Similarity=0.133 Sum_probs=110.1
Q ss_pred CCceeEEeecCCCceEEEEcCCCCcceEEEEEcCC---------CCceeeeeccCccceeee----eEEEecCCc-eEEE
Q psy505 13 NPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADN---------LHAKTMIPAHDSPLAALA----SLSVGTKSG-YRLF 78 (161)
Q Consensus 13 ~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~---------~~~~~~l~~H~~~V~~l~----~lasgs~dg-iriw 78 (161)
+...|.+++++| +..+++++. ||.|++||+++ ++++..+. |...|.+++ .+++|+.|| |++|
T Consensus 100 ~~~~v~~l~~~~-~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~~d~~i~i~ 175 (342)
T 1yfq_A 100 ANLGICRICKYG-DDKLIAASW--DGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSRLIVGMNNSQVQWF 175 (342)
T ss_dssp CCSCEEEEEEET-TTEEEEEET--TSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSEEEEEESTTEEEEE
T ss_pred CCCceEEEEeCC-CCEEEEEcC--CCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCcEEEEeCCCeEEEE
Confidence 556789999999 888888776 99999999998 88888887 999999999 789999999 9999
Q ss_pred EeCC-cCce-eeEEeecCcceEEEEEeecC-CeEEEEecCCCCeEEEEecCCC------CeEEEEE-ecC---------c
Q psy505 79 SLNS-IDTL-EQIYENSQEDVCIVERLFSS-SLVAVVSLSSPRKLTVCHFKRG------SEICNYS-FSN---------T 139 (161)
Q Consensus 79 d~~~-~~~~-~~~~~~~~~~~~v~~~~fs~-~~~~~~s~~~d~~i~iWD~~~~------~~i~~l~-~~~---------~ 139 (161)
|+++ +... ......|.. .+.+++|+| ++..+++++.|+.|+|||+..+ +.+..+. +.. .
T Consensus 176 d~~~~~~~~~~~~~~~~~~--~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (342)
T 1yfq_A 176 RLPLCEDDNGTIEESGLKY--QIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYP 253 (342)
T ss_dssp ESSCCTTCCCEEEECSCSS--CEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCC
T ss_pred ECCccccccceeeecCCCC--ceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeeccccccccccccee
Confidence 9987 5432 122233433 477889999 8888888888999999999887 7777776 433 8
Q ss_pred eEEEEECCc--EEEEEecc
Q psy505 140 ILAVKLNRK--KEEEEDEE 156 (161)
Q Consensus 140 V~~v~~~~~--~~vv~~~~ 156 (161)
|.+++|+|+ .+++...+
T Consensus 254 i~~~~~s~~~~~l~~~~~d 272 (342)
T 1yfq_A 254 VNSIEFSPRHKFLYTAGSD 272 (342)
T ss_dssp EEEEEECTTTCCEEEEETT
T ss_pred EEEEEEcCCCCEEEEecCC
Confidence 999999996 45555544
No 127
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.67 E-value=2.5e-15 Score=121.19 Aligned_cols=134 Identities=9% Similarity=-0.024 Sum_probs=107.4
Q ss_pred CceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee-------eEEEecCCc-eEEEEeCCcCc
Q psy505 14 PNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA-------SLSVGTKSG-YRLFSLNSIDT 85 (161)
Q Consensus 14 ~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~-------~lasgs~dg-iriwd~~~~~~ 85 (161)
...+.+++++|++..+++++. ||.|++||+.+++.+..+..|...+.+++ ++++++.|+ |++||+++++.
T Consensus 169 ~~~v~~~~~~~~~~~~~s~~~--d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~ 246 (433)
T 3bws_A 169 LGFVETISIPEHNELWVSQMQ--ANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE 246 (433)
T ss_dssp CCEEEEEEEGGGTEEEEEEGG--GTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE
T ss_pred CCceeEEEEcCCCEEEEEECC--CCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE
Confidence 346888899999998888765 99999999999999999999999999998 446777888 99999998765
Q ss_pred eeeEEeecCcceEEEEEeecCCeEEEEecC--------CCCeEEEEecCCCCeEEEEEecCceEEEEECCcE--EEEE
Q psy505 86 LEQIYENSQEDVCIVERLFSSSLVAVVSLS--------SPRKLTVCHFKRGSEICNYSFSNTILAVKLNRKK--EEEE 153 (161)
Q Consensus 86 ~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~--------~d~~i~iWD~~~~~~i~~l~~~~~V~~v~~~~~~--~vv~ 153 (161)
. ..+..+. .+..++|+|++..++.++ .|+.|++||+++++.+..+.+...+.+++|+|++ +++.
T Consensus 247 ~-~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 320 (433)
T 3bws_A 247 I-RKTDKIG---LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVS 320 (433)
T ss_dssp E-EECCCCS---EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEE
T ss_pred E-EEecCCC---CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEE
Confidence 4 3333332 377889999874444432 4789999999999988888787899999999984 4444
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.49 E-value=9.7e-13 Score=107.43 Aligned_cols=132 Identities=12% Similarity=0.055 Sum_probs=97.3
Q ss_pred ceeEEeecCCCceEEEEcCCCCcc---eEEEEEcCCCCceeeeeccCccceeee------eEE-EecCCc---eEEEEeC
Q psy505 15 NGICCLCVNSDNCYLAYPGSNSIG---EVQIFDADNLHAKTMIPAHDSPLAALA------SLS-VGTKSG---YRLFSLN 81 (161)
Q Consensus 15 ~~v~~~~~~~d~~~la~~g~~~dg---~v~iWd~~~~~~~~~l~~H~~~V~~l~------~la-sgs~dg---iriwd~~ 81 (161)
..+.+++++|||..||+++. |+ .|++||+.++++. .+..|...+.+++ .|+ +++.|+ |++||++
T Consensus 179 ~~v~~~~~Spdg~~la~~s~--~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~ 255 (415)
T 2hqs_A 179 QPLMSPAWSPDGSKLAYVTF--ESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA 255 (415)
T ss_dssp SCEEEEEECTTSSEEEEEEC--TTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred CcceeeEEcCCCCEEEEEEe--cCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECC
Confidence 45788999999999999775 53 9999999998875 6778888898888 565 676655 8999998
Q ss_pred CcCceeeEEeecCcceEEEEEeecCCeEEEEecCC-CC--eEEEEecCCCCeEEEEE-ecCceEEEEECCcE--EEEEe
Q psy505 82 SIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSS-PR--KLTVCHFKRGSEICNYS-FSNTILAVKLNRKK--EEEED 154 (161)
Q Consensus 82 ~~~~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~-d~--~i~iWD~~~~~~i~~l~-~~~~V~~v~~~~~~--~vv~~ 154 (161)
+++. ..+.+|.. .+.+++|+|++..++.++. ++ .|.+||+.+++.. .+. +...+.+++|+|++ +++..
T Consensus 256 ~~~~--~~l~~~~~--~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~spdG~~l~~~~ 329 (415)
T 2hqs_A 256 SGQI--RQVTDGRS--NNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVS 329 (415)
T ss_dssp TCCE--EECCCCSS--CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEEEECTTSSEEEEEE
T ss_pred CCCE--EeCcCCCC--cccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEecCCCcccCeEECCCCCEEEEEE
Confidence 8764 23344543 3678899998865554433 33 6888899988753 443 45789999999983 55544
No 129
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.47 E-value=5.9e-13 Score=109.75 Aligned_cols=112 Identities=9% Similarity=0.143 Sum_probs=86.9
Q ss_pred CCceeEEeecCCC-ceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee------eEEEecCCc-eEEEEeCCcC
Q psy505 13 NPNGICCLCVNSD-NCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA------SLSVGTKSG-YRLFSLNSID 84 (161)
Q Consensus 13 ~~~~v~~~~~~~d-~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~------~lasgs~dg-iriwd~~~~~ 84 (161)
|...|.+++++|+ +.++|+++. ||+|++||++++..+....+|...|++++ +|++|+.|| |++||++ ++
T Consensus 148 h~~~V~~v~~~p~~~~~las~s~--Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~ 224 (434)
T 2oit_A 148 AGGMVIDMKWNPTVPSMVAVCLA--DGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQ 224 (434)
T ss_dssp GGGSEEEEEECSSCTTEEEEEET--TSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CC
T ss_pred CCCceEEEEECCCCCCEEEEEEC--CCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cc
Confidence 4556999999997 788888765 99999999999987777888999999998 899999999 9999997 44
Q ss_pred ceeeEEeecC-----cceEEEEEeecCCeEEEEec-CCC------CeEEEEecCCC
Q psy505 85 TLEQIYENSQ-----EDVCIVERLFSSSLVAVVSL-SSP------RKLTVCHFKRG 128 (161)
Q Consensus 85 ~~~~~~~~~~-----~~~~v~~~~fs~~~~~~~s~-~~d------~~i~iWD~~~~ 128 (161)
.. ..+..|. +...+.++.|+++...+++. ..| ..+++||+.+.
T Consensus 225 ~~-~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 225 EK-KVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EE-EEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred cc-ccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 33 2333321 23578899999988777432 122 24999999875
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.41 E-value=6.5e-12 Score=106.42 Aligned_cols=121 Identities=11% Similarity=0.026 Sum_probs=93.3
Q ss_pred ecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee------eEEEecCCc-eEEEEe--CCcCceeeEEe
Q psy505 21 CVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA------SLSVGTKSG-YRLFSL--NSIDTLEQIYE 91 (161)
Q Consensus 21 ~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~------~lasgs~dg-iriwd~--~~~~~~~~~~~ 91 (161)
+++|++..+++.+. |++|++||..+++++.++..+.. +.+++ +|++++.|+ |++||+ .+++.+..+ .
T Consensus 144 ~~~p~~~~~vs~~~--d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i-~ 219 (543)
T 1nir_A 144 DLDLPNLFSVTLRD--AGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI-K 219 (543)
T ss_dssp CCCGGGEEEEEEGG--GTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE-E
T ss_pred ccCCCCEEEEEEcC--CCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEE-e
Confidence 46888888877554 99999999999999999984433 77775 888888889 999999 787655433 3
Q ss_pred ecCcceEEEEEeecC----CeEEEEec-CCCCeEEEEecCCCCeEEEEEe-----------c-CceEEEEECCc
Q psy505 92 NSQEDVCIVERLFSS----SLVAVVSL-SSPRKLTVCHFKRGSEICNYSF-----------S-NTILAVKLNRK 148 (161)
Q Consensus 92 ~~~~~~~v~~~~fs~----~~~~~~s~-~~d~~i~iWD~~~~~~i~~l~~-----------~-~~V~~v~~~~~ 148 (161)
.+. ....++|+| ++..++++ ..+++|.|||..+++++..+.. + ..|.++.++|+
T Consensus 220 ~g~---~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~ 290 (543)
T 1nir_A 220 IGI---EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHE 290 (543)
T ss_dssp CCS---EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSS
T ss_pred cCC---CcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCC
Confidence 222 357889999 77555443 4578999999999999988753 2 27899999985
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.40 E-value=9.2e-12 Score=101.63 Aligned_cols=135 Identities=14% Similarity=0.038 Sum_probs=96.3
Q ss_pred CceeEEeecCCCceEEEEcCCCCcce--EEEEEcCCCCceeeeeccCccceeee------eEEEecC-Cc---eEEEEeC
Q psy505 14 PNGICCLCVNSDNCYLAYPGSNSIGE--VQIFDADNLHAKTMIPAHDSPLAALA------SLSVGTK-SG---YRLFSLN 81 (161)
Q Consensus 14 ~~~v~~~~~~~d~~~la~~g~~~dg~--v~iWd~~~~~~~~~l~~H~~~V~~l~------~lasgs~-dg---iriwd~~ 81 (161)
+..+.+++++|||..|+++++. ||. |++||+.+++. ..+..|...+.+++ +|++++. ++ |.+||+.
T Consensus 222 ~~~~~~~~~spdg~~la~~~~~-~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~ 299 (415)
T 2hqs_A 222 PRHNGAPAFSPDGSKLAFALSK-TGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN 299 (415)
T ss_dssp SSCEEEEEECTTSSEEEEEECT-TSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred CCcccCEEEcCCCCEEEEEEec-CCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECC
Confidence 3457899999999988855542 554 99999998776 67888998898888 6776665 44 6666888
Q ss_pred CcCceeeEEeecCcceEEEEEeecCCeEEEEecCC---CCeEEEEecCCCCeEEEEEecCceEEEEECCcE--EEEEec
Q psy505 82 SIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSS---PRKLTVCHFKRGSEICNYSFSNTILAVKLNRKK--EEEEDE 155 (161)
Q Consensus 82 ~~~~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~---d~~i~iWD~~~~~~i~~l~~~~~V~~v~~~~~~--~vv~~~ 155 (161)
+++.. .+..+.. .+..++|+|++..++.++. +..|.+||+.++++. .+.....+.++.|+|++ ++....
T Consensus 300 ~~~~~--~l~~~~~--~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~spdg~~l~~~s~ 373 (415)
T 2hqs_A 300 GGAPQ--RITWEGS--QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTFLDETPSLAPNGTMVIYSSS 373 (415)
T ss_dssp SSCCE--ECCCSSS--EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSSSCEEEEECTTSSEEEEEEE
T ss_pred CCCEE--EEecCCC--cccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCCCcCCeEEcCCCCEEEEEEc
Confidence 77532 2333432 4678899998866665433 358999999998863 44433489999999983 444443
No 132
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.40 E-value=1.7e-11 Score=95.59 Aligned_cols=133 Identities=12% Similarity=0.113 Sum_probs=97.8
Q ss_pred eEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeec----cCccceeee-------eEEEecCCc-eEEEEeCCcC
Q psy505 17 ICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPA----HDSPLAALA-------SLSVGTKSG-YRLFSLNSID 84 (161)
Q Consensus 17 v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~----H~~~V~~l~-------~lasgs~dg-iriwd~~~~~ 84 (161)
+..++++|||..++++.. ++.|.+||+.+++.+..+.. +...+.+++ ++++...++ |.+||.++++
T Consensus 187 ~~~~~~s~dg~~l~~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~ 264 (353)
T 3vgz_A 187 STGLALDSEGKRLYTTNA--DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGN 264 (353)
T ss_dssp CCCCEEETTTTEEEEECT--TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCC
T ss_pred cceEEECCCCCEEEEEcC--CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCc
Confidence 445677889998888765 89999999999998887764 455565565 444444556 9999999987
Q ss_pred ceeeEEeecCcceEEEEEeecCCeE-EEEecCCCCeEEEEecCCCCeEEEEEecCceEEEEECCcE--EEEEecc
Q psy505 85 TLEQIYENSQEDVCIVERLFSSSLV-AVVSLSSPRKLTVCHFKRGSEICNYSFSNTILAVKLNRKK--EEEEDEE 156 (161)
Q Consensus 85 ~~~~~~~~~~~~~~v~~~~fs~~~~-~~~s~~~d~~i~iWD~~~~~~i~~l~~~~~V~~v~~~~~~--~vv~~~~ 156 (161)
.+..+ .... + ..++|+|++. .+++...+++|.+||..+++.+..+.....+.+++|+|++ +.+...+
T Consensus 265 ~~~~~-~~~~-~---~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 265 ILAKV-AAPE-S---LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp EEEEE-ECSS-C---CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred EEEEE-EcCC-C---ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence 65433 3222 1 3577898764 4556667789999999999998888877889999999983 5554443
No 133
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.37 E-value=2e-11 Score=103.41 Aligned_cols=127 Identities=14% Similarity=0.116 Sum_probs=93.4
Q ss_pred cceEEecCCCCCCceeEEeecCC----CceEEEEcCCCCcceEEEEEcCCCCceeeeecc----------Cc-cceeee-
Q psy505 2 KVLHTIRDTPPNPNGICCLCVNS----DNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAH----------DS-PLAALA- 65 (161)
Q Consensus 2 ~~~~~~~~~~~~~~~v~~~~~~~----d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H----------~~-~V~~l~- 65 (161)
+++.++ .. ..+...++++| ||.++++++.. +++|+|||..++++++++..+ .+ .+.++.
T Consensus 213 ~~~~~i-~~---g~~p~~va~sp~~~~dg~~l~v~~~~-~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~ 287 (543)
T 1nir_A 213 TKVAEI-KI---GIEARSVESSKFKGYEDRYTIAGAYW-PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIA 287 (543)
T ss_dssp EEEEEE-EC---CSEEEEEEECCSTTCTTTEEEEEEEE-SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEE
T ss_pred cEEEEE-ec---CCCcceEEeCCCcCCCCCEEEEEEcc-CCeEEEEeccccccceeecccCcccCccccccCCceEEEEE
Confidence 455666 33 23568889999 99999887753 899999999999999988763 22 466665
Q ss_pred ------eEEEecCCc-eEEEEeCCcCceeeEEeecCcceEEEEEeecCCeEE-EEecCCCCeEEEEecCCCCeEEEEE
Q psy505 66 ------SLSVGTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVA-VVSLSSPRKLTVCHFKRGSEICNYS 135 (161)
Q Consensus 66 ------~lasgs~dg-iriwd~~~~~~~~~~~~~~~~~~~v~~~~fs~~~~~-~~s~~~d~~i~iWD~~~~~~i~~l~ 135 (161)
++++...++ |.+||..+++.+....-.+.. ....++|+|++.. ++++..+++|.+||.++++++..+.
T Consensus 288 s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~--~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~ 363 (543)
T 1nir_A 288 SHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAP--FLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVD 363 (543)
T ss_dssp CSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCS--SCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred CCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCc--CccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeec
Confidence 777888888 999999887654311112221 2456789998864 4555567899999999999988876
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.35 E-value=9.8e-12 Score=106.95 Aligned_cols=136 Identities=10% Similarity=0.048 Sum_probs=98.6
Q ss_pred CceeEEeecCCCceEEEEcCCCCcc-----eEEEEEcCCCCceeeeeccCcc------------------------ceee
Q psy505 14 PNGICCLCVNSDNCYLAYPGSNSIG-----EVQIFDADNLHAKTMIPAHDSP------------------------LAAL 64 (161)
Q Consensus 14 ~~~v~~~~~~~d~~~la~~g~~~dg-----~v~iWd~~~~~~~~~l~~H~~~------------------------V~~l 64 (161)
...+..++++|||.+|++++.. || +|++||+.+++....+..|... |.++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~-d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGK-DSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECC-SSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCEEEEEecc-CCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 4458899999999999997763 77 8999999999887777665433 6777
Q ss_pred e------eEEEecCCceEEEEeCCcC--ceeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEEe
Q psy505 65 A------SLSVGTKSGYRLFSLNSID--TLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYSF 136 (161)
Q Consensus 65 ~------~lasgs~dgiriwd~~~~~--~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~ 136 (161)
+ +|++++...|++||+.++. .... +..+.. .+..++||||+..++..+ ++.|.+||+.+++.......
T Consensus 115 ~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~-l~~~~~--~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~ 190 (741)
T 2ecf_A 115 QWSPDAQRLLFPLGGELYLYDLKQEGKAAVRQ-LTHGEG--FATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTAD 190 (741)
T ss_dssp EECTTSSEEEEEETTEEEEEESSSCSTTSCCB-CCCSSS--CEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCC
T ss_pred EECCCCCEEEEEeCCcEEEEECCCCCcceEEE-cccCCc--ccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccC
Confidence 6 7888877339999998872 2323 334433 367889999997777664 46899999998876543332
Q ss_pred c-Cc----------------eEEEEECCc--EEEEEe
Q psy505 137 S-NT----------------ILAVKLNRK--KEEEED 154 (161)
Q Consensus 137 ~-~~----------------V~~v~~~~~--~~vv~~ 154 (161)
. .. +.++.|||| .|+++.
T Consensus 191 ~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~ 227 (741)
T 2ecf_A 191 GSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYAR 227 (741)
T ss_dssp CCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEE
T ss_pred CccceeccccceeeeeccccccceEECCCCCEEEEEE
Confidence 2 21 478999998 466554
No 135
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.34 E-value=3.7e-12 Score=99.05 Aligned_cols=138 Identities=9% Similarity=0.049 Sum_probs=93.5
Q ss_pred eecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccC-ccceeee-------eEEEecCCc-eEEEEeCCcCceeeEE
Q psy505 20 LCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHD-SPLAALA-------SLSVGTKSG-YRLFSLNSIDTLEQIY 90 (161)
Q Consensus 20 ~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~-~~V~~l~-------~lasgs~dg-iriwd~~~~~~~~~~~ 90 (161)
+++++++..+++.+. +++|++||+.+++.+..+..+. ..+.+++ ++++++.++ |.+||+++++....+.
T Consensus 5 ~~~~~~~~~~v~~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 5 PALKAGHEYMIVTNY--PNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCTTCEEEEEEET--TTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ccccCCCEEEEEeCC--CCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 356778888887665 8999999999999888887654 1355555 455666777 9999999876543332
Q ss_pred eecCc---ceEEEEEeecCCeEEEEecCC------------CCeEEEEecCCCC---eEEEEEecCceEEEEECCcEEEE
Q psy505 91 ENSQE---DVCIVERLFSSSLVAVVSLSS------------PRKLTVCHFKRGS---EICNYSFSNTILAVKLNRKKEEE 152 (161)
Q Consensus 91 ~~~~~---~~~v~~~~fs~~~~~~~s~~~------------d~~i~iWD~~~~~---~i~~l~~~~~V~~v~~~~~~~vv 152 (161)
.++.. ...+..++|+|++..++.+.. ++.|.+||+++++ .+..+..+..+.+++|+|++-+.
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~l~ 162 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLY 162 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEE
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCcEE
Confidence 22210 112456789998755554432 3799999999854 34455566779999999985455
Q ss_pred Eecccee
Q psy505 153 EDEEEEK 159 (161)
Q Consensus 153 ~~~~~~~ 159 (161)
+..+.|+
T Consensus 163 ~~~~~i~ 169 (349)
T 1jmx_B 163 VAGPDIY 169 (349)
T ss_dssp EESSSEE
T ss_pred EccCcEE
Confidence 5555454
No 136
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.34 E-value=5e-11 Score=92.92 Aligned_cols=138 Identities=14% Similarity=0.130 Sum_probs=99.3
Q ss_pred eeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee------eEEEecCCc-eEEEEeCCcCceee
Q psy505 16 GICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA------SLSVGTKSG-YRLFSLNSIDTLEQ 88 (161)
Q Consensus 16 ~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~------~lasgs~dg-iriwd~~~~~~~~~ 88 (161)
+...++++|||..+++++...++.|.+||+.+++.+..+..+...+.+++ ++++++.++ +.+||+++++....
T Consensus 142 ~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~ 221 (353)
T 3vgz_A 142 QPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSR 221 (353)
T ss_dssp EEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEE
T ss_pred CCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEE
Confidence 46778889999877665521278999999999999888886666677766 677777788 99999998875533
Q ss_pred EEeecC-cceEEEEEeecCCeE-EEEecCCCCeEEEEecCCCCeEEEEEecCceEEEEECCc--EEEEEe
Q psy505 89 IYENSQ-EDVCIVERLFSSSLV-AVVSLSSPRKLTVCHFKRGSEICNYSFSNTILAVKLNRK--KEEEED 154 (161)
Q Consensus 89 ~~~~~~-~~~~v~~~~fs~~~~-~~~s~~~d~~i~iWD~~~~~~i~~l~~~~~V~~v~~~~~--~~vv~~ 154 (161)
+..+.. .......++|+|++. ..++...++.|.+||.++++.+..+....+ .++.|+|+ .+.+..
T Consensus 222 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~s~dg~~l~v~~ 290 (353)
T 3vgz_A 222 KKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES-LAVLFNPARNEAYVTH 290 (353)
T ss_dssp EECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC-CCEEEETTTTEEEEEE
T ss_pred EEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC-ceEEECCCCCEEEEEE
Confidence 322111 122356788998764 344455668999999999999888876444 57999887 355554
No 137
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.33 E-value=1.9e-11 Score=92.14 Aligned_cols=132 Identities=8% Similarity=-0.030 Sum_probs=92.1
Q ss_pred CceeEEeecCCCceEEEEcCCCCcceEEEEEcCC-CCceeeeeccC-ccceeee------eEEEec--CCc-eEEEEe--
Q psy505 14 PNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADN-LHAKTMIPAHD-SPLAALA------SLSVGT--KSG-YRLFSL-- 80 (161)
Q Consensus 14 ~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~-~~~~~~l~~H~-~~V~~l~------~lasgs--~dg-iriwd~-- 80 (161)
...+.+++++|||.++++++ ++.|++||+.+ ++....+.+|. ..+.+++ +|++++ .++ .+||..
T Consensus 41 ~~~v~~~~~spdg~~l~~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~ 117 (297)
T 2ojh_A 41 PELFEAPNWSPDGKYLLLNS---EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPS 117 (297)
T ss_dssp SSCCEEEEECTTSSEEEEEE---TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEET
T ss_pred CcceEeeEECCCCCEEEEEc---CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEEC
Confidence 44688999999999999854 78999999999 88877777764 6777777 777777 445 666665
Q ss_pred CCcCceeeEEeecCcceEEEEEeecCCeEEEE-ecCCCCeEEEEec--CCCCeEEEE-EecCceEEEEECCcE--EEEEe
Q psy505 81 NSIDTLEQIYENSQEDVCIVERLFSSSLVAVV-SLSSPRKLTVCHF--KRGSEICNY-SFSNTILAVKLNRKK--EEEED 154 (161)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~fs~~~~~~~-s~~~d~~i~iWD~--~~~~~i~~l-~~~~~V~~v~~~~~~--~vv~~ 154 (161)
.++. . ..+..+. . +..+.|+|++..++ ++..++.++||++ .+++. ..+ .+...+.++.|+|++ +++..
T Consensus 118 ~~~~-~-~~~~~~~-~--~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~s~dg~~l~~~~ 191 (297)
T 2ojh_A 118 TGGT-P-RLMTKNL-P--SYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE-TRLTHGEGRNDGPDYSPDGRWIYFNS 191 (297)
T ss_dssp TCCC-C-EECCSSS-S--EEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE-EECCCSSSCEEEEEECTTSSEEEEEE
T ss_pred CCCc-e-EEeecCC-C--ccceEECCCCCEEEEEECCCCceEEEEEECCCCcc-eEcccCCCccccceECCCCCEEEEEe
Confidence 4433 2 2333332 2 56778999876554 4556788999985 44443 333 356789999999983 55444
No 138
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.33 E-value=1.8e-11 Score=92.29 Aligned_cols=136 Identities=11% Similarity=0.016 Sum_probs=94.5
Q ss_pred eeEEeecCCCceEEEEcCCCCcceEEEEEcCC-CCceeeeeccCccceeee------eEEEec-CCc-eEEEEeC-CcCc
Q psy505 16 GICCLCVNSDNCYLAYPGSNSIGEVQIFDADN-LHAKTMIPAHDSPLAALA------SLSVGT-KSG-YRLFSLN-SIDT 85 (161)
Q Consensus 16 ~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~-~~~~~~l~~H~~~V~~l~------~lasgs-~dg-iriwd~~-~~~~ 85 (161)
.+..++++|||..+++++.. |+.++||++.. +.....+..|...+.+++ +|+.++ .++ ++||++. .+..
T Consensus 130 ~~~~~~~spdg~~l~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~ 208 (297)
T 2ojh_A 130 PSYWHGWSPDGKSFTYCGIR-DQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSS 208 (297)
T ss_dssp SEEEEEECTTSSEEEEEEEE-TTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred CccceEECCCCCEEEEEECC-CCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCC
Confidence 36778899999998865553 89999999642 344567778888898888 555444 577 9999986 3443
Q ss_pred eeeEEeecCcceEEEEEeecCCeEEEEecCCC-----------CeEEEEecCCCCeEEEE---EecCceEEEEECCc--E
Q psy505 86 LEQIYENSQEDVCIVERLFSSSLVAVVSLSSP-----------RKLTVCHFKRGSEICNY---SFSNTILAVKLNRK--K 149 (161)
Q Consensus 86 ~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d-----------~~i~iWD~~~~~~i~~l---~~~~~V~~v~~~~~--~ 149 (161)
. ..+..|. ..+..+.|+|++..++.++.+ +.|.+||+++++..... .+...|..+.|+|+ .
T Consensus 209 ~-~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~ 285 (297)
T 2ojh_A 209 V-ERITDSA--YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDE 285 (297)
T ss_dssp E-EECCCCS--EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSE
T ss_pred c-EEEecCC--cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCE
Confidence 4 3334443 356778999988655543322 56999999988764333 24578999999997 4
Q ss_pred EEEEec
Q psy505 150 EEEEDE 155 (161)
Q Consensus 150 ~vv~~~ 155 (161)
++++..
T Consensus 286 l~~~~~ 291 (297)
T 2ojh_A 286 FAYVRY 291 (297)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 555443
No 139
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.33 E-value=6.1e-12 Score=107.80 Aligned_cols=133 Identities=10% Similarity=0.006 Sum_probs=93.8
Q ss_pred eeEEeecCCCceEEEEcCCC-------CcceEEEEEcCCCCc--eeeeeccCccceeee------eEEEecCCceEEEEe
Q psy505 16 GICCLCVNSDNCYLAYPGSN-------SIGEVQIFDADNLHA--KTMIPAHDSPLAALA------SLSVGTKSGYRLFSL 80 (161)
Q Consensus 16 ~v~~~~~~~d~~~la~~g~~-------~dg~v~iWd~~~~~~--~~~l~~H~~~V~~l~------~lasgs~dgiriwd~ 80 (161)
++..++++|||++||+++.. .++.+.+||+.+++. +....+|...+.+++ .||.++.+.|++||+
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~ 141 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAH 141 (723)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESS
T ss_pred ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEECCeEEEEEC
Confidence 47889999999999987531 037899999999876 222335555577776 888888755999999
Q ss_pred CCcCceeeEEeecCcce----------------EEEEEeecCCeEEEEecCCC---------------------------
Q psy505 81 NSIDTLEQIYENSQEDV----------------CIVERLFSSSLVAVVSLSSP--------------------------- 117 (161)
Q Consensus 81 ~~~~~~~~~~~~~~~~~----------------~v~~~~fs~~~~~~~s~~~d--------------------------- 117 (161)
.+++.. .+...+...+ .+..++||||+..++.++.|
T Consensus 142 ~~g~~~-~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (723)
T 1xfd_A 142 VGKQAI-RVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPK 220 (723)
T ss_dssp SSSCCE-EEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCB
T ss_pred CCCceE-EEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCC
Confidence 988754 3433322221 11578899998666654322
Q ss_pred -------CeEEEEecCCCCeEEEEEe-------cCceEEEEECCcE
Q psy505 118 -------RKLTVCHFKRGSEICNYSF-------SNTILAVKLNRKK 149 (161)
Q Consensus 118 -------~~i~iWD~~~~~~i~~l~~-------~~~V~~v~~~~~~ 149 (161)
.+|++||+.++++...+.. ...+.+++|+||+
T Consensus 221 ~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg 266 (723)
T 1xfd_A 221 AGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATST 266 (723)
T ss_dssp TTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSS
T ss_pred CCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCC
Confidence 2799999999986556542 3578999999994
No 140
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.33 E-value=6.4e-11 Score=91.98 Aligned_cols=128 Identities=8% Similarity=0.053 Sum_probs=90.3
Q ss_pred CCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee------eE-EEecCCc-eEEEEeCCcCceeeEEeecC
Q psy505 23 NSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA------SL-SVGTKSG-YRLFSLNSIDTLEQIYENSQ 94 (161)
Q Consensus 23 ~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~------~l-asgs~dg-iriwd~~~~~~~~~~~~~~~ 94 (161)
.+++..+..++.. ++.|++||+.+++.+..+..+..++ +++ ++ +++..++ |.+||.++++........+.
T Consensus 6 ~~~~~~~~v~~~~-~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 83 (331)
T 3u4y_A 6 QTTSNFGIVVEQH-LRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQ 83 (331)
T ss_dssp -CCCCEEEEEEGG-GTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECS
T ss_pred cCCCCEEEEEecC-CCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCC
Confidence 4444443333442 8999999999999988888777666 776 34 4444466 99999999875234444444
Q ss_pred cceEEEEEeecCCeEEEEecCCC-C--eEEEEecCCCCeEEEEEecCceEEEEECCc--EEEEEe
Q psy505 95 EDVCIVERLFSSSLVAVVSLSSP-R--KLTVCHFKRGSEICNYSFSNTILAVKLNRK--KEEEED 154 (161)
Q Consensus 95 ~~~~v~~~~fs~~~~~~~s~~~d-~--~i~iWD~~~~~~i~~l~~~~~V~~v~~~~~--~~vv~~ 154 (161)
.. ..+++|+|++..++....+ + .|.+||.++++.+..+.......+++|+|+ .++++.
T Consensus 84 ~~--~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 146 (331)
T 3u4y_A 84 SS--MADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILID 146 (331)
T ss_dssp SC--CCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEE
T ss_pred CC--ccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEe
Confidence 32 2237899987666554444 3 899999999999888887777899999998 355553
No 141
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.31 E-value=2.3e-12 Score=110.41 Aligned_cols=133 Identities=10% Similarity=0.048 Sum_probs=95.5
Q ss_pred eEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCc---cceeee------eEEEecCC---------c-eEE
Q psy505 17 ICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDS---PLAALA------SLSVGTKS---------G-YRL 77 (161)
Q Consensus 17 v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~---~V~~l~------~lasgs~d---------g-iri 77 (161)
..+++++|||.++++ +. ||+|++||+.++++...+.+|.. .|.+++ +||+++.+ + +.+
T Consensus 19 ~~~~~~spdg~~~~~-~~--dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~ 95 (723)
T 1xfd_A 19 DPEAKWISDTEFIYR-EQ--KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL 95 (723)
T ss_dssp CCCCCBSSSSCBCCC-CS--SSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred ccccEEcCCCcEEEE-eC--CCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEE
Confidence 567889999997654 44 89999999999999888888875 388877 78888764 5 889
Q ss_pred EEeCCcCceeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEEe-cCce----------------
Q psy505 78 FSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYSF-SNTI---------------- 140 (161)
Q Consensus 78 wd~~~~~~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~-~~~V---------------- 140 (161)
||+++++. ..+.....+...+..++||||+..++..+. +.|++||+.+++....... ...+
T Consensus 96 ~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~ 173 (723)
T 1xfd_A 96 SKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILK 173 (723)
T ss_dssp EESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSS
T ss_pred EECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEecc
Confidence 99998864 222221111112556789999866665543 6899999999887655443 3333
Q ss_pred --EEEEECCc--EEEEEe
Q psy505 141 --LAVKLNRK--KEEEED 154 (161)
Q Consensus 141 --~~v~~~~~--~~vv~~ 154 (161)
.+++|||| .|+.+.
T Consensus 174 ~~~~~~~SpDg~~la~~~ 191 (723)
T 1xfd_A 174 THIAHWWSPDGTRLAYAA 191 (723)
T ss_dssp SSEEEEECTTSSEEEEEE
T ss_pred CcceEEECCCCCEEEEEE
Confidence 78999998 455554
No 142
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.30 E-value=1.8e-10 Score=89.37 Aligned_cols=131 Identities=11% Similarity=0.052 Sum_probs=91.4
Q ss_pred eecCCCceEEEEcCCCCc-c--eEEEEEcCCCCceeeeeccCccceeee-------eEEEecC-Cc-eEEEEeCCcCcee
Q psy505 20 LCVNSDNCYLAYPGSNSI-G--EVQIFDADNLHAKTMIPAHDSPLAALA-------SLSVGTK-SG-YRLFSLNSIDTLE 87 (161)
Q Consensus 20 ~~~~~d~~~la~~g~~~d-g--~v~iWd~~~~~~~~~l~~H~~~V~~l~-------~lasgs~-dg-iriwd~~~~~~~~ 87 (161)
++++|||.+++++.. + + .|++||+.+++.+..+..+.. ..+++ +++++.. +. +++|++.....+.
T Consensus 89 ~~~s~dg~~l~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~-~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~ 165 (331)
T 3u4y_A 89 VDITPDDQFAVTVTG--LNHPFNMQSYSFLKNKFISTIPIPYD-AVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLF 165 (331)
T ss_dssp EEECTTSSEEEECCC--SSSSCEEEEEETTTTEEEEEEECCTT-EEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEE
T ss_pred eEECCCCCEEEEecC--CCCcccEEEEECCCCCeEEEEECCCC-ccceEECCCCCEEEEEecCCCceEEEEEECCCCcEe
Confidence 677889998885443 4 3 999999999998888876655 36666 4444444 55 9999987644331
Q ss_pred eE-EeecCcceEEEEEeecCCeE-EEEecCCCCeEEEEecCCCCe---EEEEEecCceEEEEECCcE--EEEE
Q psy505 88 QI-YENSQEDVCIVERLFSSSLV-AVVSLSSPRKLTVCHFKRGSE---ICNYSFSNTILAVKLNRKK--EEEE 153 (161)
Q Consensus 88 ~~-~~~~~~~~~v~~~~fs~~~~-~~~s~~~d~~i~iWD~~~~~~---i~~l~~~~~V~~v~~~~~~--~vv~ 153 (161)
.. ...-........++|+|++. .++++..++.|.+||+++++. +..+.....+.+++|+|++ +++.
T Consensus 166 ~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~ 238 (331)
T 3u4y_A 166 DTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVL 238 (331)
T ss_dssp EEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEE
T ss_pred ecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEE
Confidence 11 01000011246788999884 556666778999999999998 7777777888999999983 4444
No 143
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.28 E-value=1.3e-10 Score=89.79 Aligned_cols=138 Identities=10% Similarity=0.038 Sum_probs=88.4
Q ss_pred eeEEeecCCCceEEEEcCCCCcceEEEEEcCC-CCcee----eeecc-Cccceeee------eE-EEecCCc-eEEEEeC
Q psy505 16 GICCLCVNSDNCYLAYPGSNSIGEVQIFDADN-LHAKT----MIPAH-DSPLAALA------SL-SVGTKSG-YRLFSLN 81 (161)
Q Consensus 16 ~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~-~~~~~----~l~~H-~~~V~~l~------~l-asgs~dg-iriwd~~ 81 (161)
.+..++++|||.++++++.. ++.|++||+.+ ++... .+..+ ...+.+++ ++ +++..++ +++||+.
T Consensus 130 ~~~~~~~s~dg~~l~~~~~~-~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~ 208 (343)
T 1ri6_A 130 GCHSANISPDNRTLWVPALK-QDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELK 208 (343)
T ss_dssp TBCCCEECTTSSEEEEEEGG-GTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESS
T ss_pred CceEEEECCCCCEEEEecCC-CCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 35677789999888776643 89999999987 65432 23332 33566666 34 4555777 9999995
Q ss_pred --CcCce-eeEEe----ecCcceEEEEEeecCCeE-EEEecCCCCeEEEEecC--CC--CeEEEEEecCceEEEEECCc-
Q psy505 82 --SIDTL-EQIYE----NSQEDVCIVERLFSSSLV-AVVSLSSPRKLTVCHFK--RG--SEICNYSFSNTILAVKLNRK- 148 (161)
Q Consensus 82 --~~~~~-~~~~~----~~~~~~~v~~~~fs~~~~-~~~s~~~d~~i~iWD~~--~~--~~i~~l~~~~~V~~v~~~~~- 148 (161)
+++.. ..... ++.+...+..++|+|++. .++++..++.|++||+. ++ +.+..+.....+.+++|+|+
T Consensus 209 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg 288 (343)
T 1ri6_A 209 DPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSG 288 (343)
T ss_dssp CTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTS
T ss_pred CCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCC
Confidence 34321 11111 111123455789999874 44466678899999998 33 34444544455899999997
Q ss_pred -EEEEEe
Q psy505 149 -KEEEED 154 (161)
Q Consensus 149 -~~vv~~ 154 (161)
.++++.
T Consensus 289 ~~l~~~~ 295 (343)
T 1ri6_A 289 KYLIAAG 295 (343)
T ss_dssp SEEEEEC
T ss_pred CEEEEec
Confidence 455555
No 144
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.27 E-value=5.1e-11 Score=92.18 Aligned_cols=134 Identities=9% Similarity=-0.003 Sum_probs=87.1
Q ss_pred eeEEeecCCCceEEEEcCCCCcceEEEEEcC--CCC--ceeeeeccCccceeee------eE-EEecCCc-eEEEEeCCc
Q psy505 16 GICCLCVNSDNCYLAYPGSNSIGEVQIFDAD--NLH--AKTMIPAHDSPLAALA------SL-SVGTKSG-YRLFSLNSI 83 (161)
Q Consensus 16 ~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~--~~~--~~~~l~~H~~~V~~l~------~l-asgs~dg-iriwd~~~~ 83 (161)
.+..++++|||.++++++.. ++.|++||+. +++ .+..+..+. .+.+++ +| +++..++ |++||+..+
T Consensus 39 ~~~~~~~spdg~~l~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~ 116 (343)
T 1ri6_A 39 QVQPMVVSPDKRYLYVGVRP-EFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDG 116 (343)
T ss_dssp CCCCEEECTTSSEEEEEETT-TTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred CCceEEECCCCCEEEEeecC-CCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCC
Confidence 45567889999988887763 5999999998 555 345566554 677776 45 4455577 999999433
Q ss_pred Cc--eeeEEeecCcceEEEEEeecCCeE-EEEecCCCCeEEEEecCC-CCeEE----EEEe--cCceEEEEECCcE--EE
Q psy505 84 DT--LEQIYENSQEDVCIVERLFSSSLV-AVVSLSSPRKLTVCHFKR-GSEIC----NYSF--SNTILAVKLNRKK--EE 151 (161)
Q Consensus 84 ~~--~~~~~~~~~~~~~v~~~~fs~~~~-~~~s~~~d~~i~iWD~~~-~~~i~----~l~~--~~~V~~v~~~~~~--~v 151 (161)
.. ......++. .+.+++|+|++. .++++..++.|++||+.+ ++... .+.. ...+..++|+|++ ++
T Consensus 117 ~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~ 193 (343)
T 1ri6_A 117 LPVGVVDVVEGLD---GCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAY 193 (343)
T ss_dssp EEEEEEEEECCCT---TBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEE
T ss_pred ccccccccccCCC---CceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEE
Confidence 21 112222322 255678999874 333433678999999998 65433 2222 3478899999983 54
Q ss_pred EEe
Q psy505 152 EED 154 (161)
Q Consensus 152 v~~ 154 (161)
++.
T Consensus 194 ~~~ 196 (343)
T 1ri6_A 194 CVN 196 (343)
T ss_dssp EEE
T ss_pred EEe
Confidence 443
No 145
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.24 E-value=9.5e-11 Score=90.44 Aligned_cols=129 Identities=13% Similarity=0.133 Sum_probs=88.4
Q ss_pred EEEEcCCCCcceEEEEEcCCCCceeeeeccCc--cceeee-------eEEEecCCc-eEEEEeCCcCceeeEEeecCc--
Q psy505 28 YLAYPGSNSIGEVQIFDADNLHAKTMIPAHDS--PLAALA-------SLSVGTKSG-YRLFSLNSIDTLEQIYENSQE-- 95 (161)
Q Consensus 28 ~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~--~V~~l~-------~lasgs~dg-iriwd~~~~~~~~~~~~~~~~-- 95 (161)
++++++. ++.|++||+.+++.+..+..... .+.+++ ++++++.++ |.+||+.+++.+..+..++.+
T Consensus 3 ~~v~~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~ 80 (337)
T 1pby_B 3 YILAPAR--PDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEER 80 (337)
T ss_dssp EEEEEET--TTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEE
T ss_pred EEEEcCC--CCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccc
Confidence 5565554 89999999999998888874331 356666 456777777 999999988755333222200
Q ss_pred ceEEEEEeecCCeEEEEecC------------CCCeEEEEecCCCCeEEEEEecCceEEEEECCcE--EEEEecccee
Q psy505 96 DVCIVERLFSSSLVAVVSLS------------SPRKLTVCHFKRGSEICNYSFSNTILAVKLNRKK--EEEEDEEEEK 159 (161)
Q Consensus 96 ~~~v~~~~fs~~~~~~~s~~------------~d~~i~iWD~~~~~~i~~l~~~~~V~~v~~~~~~--~vv~~~~~~~ 159 (161)
...+..++|+|++..++.+. .++.|.+||+++++.+..+.....+.+++|+|++ +++. .+.|+
T Consensus 81 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~i~ 157 (337)
T 1pby_B 81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL-GRDLH 157 (337)
T ss_dssp EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE-SSSEE
T ss_pred cccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe-CCeEE
Confidence 01234678999874333331 3689999999999988877777788899999983 4444 55554
No 146
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.24 E-value=1.1e-09 Score=85.87 Aligned_cols=135 Identities=11% Similarity=0.075 Sum_probs=88.1
Q ss_pred EEeecCCCceEEEEcC-CCCcceEEEEEcCCCC--ceeeeeccCccceeee------eEEEec-CCc-eEEEEeCCcCce
Q psy505 18 CCLCVNSDNCYLAYPG-SNSIGEVQIFDADNLH--AKTMIPAHDSPLAALA------SLSVGT-KSG-YRLFSLNSIDTL 86 (161)
Q Consensus 18 ~~~~~~~d~~~la~~g-~~~dg~v~iWd~~~~~--~~~~l~~H~~~V~~l~------~lasgs-~dg-iriwd~~~~~~~ 86 (161)
..++++|||..++++. . .++.|++||+.+++ .+..+..|...+..++ +|++++ .++ +++||+.....+
T Consensus 43 ~~~a~spdg~l~~~~~~~-~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~ 121 (347)
T 3hfq_A 43 TYLALSAKDCLYSVDKED-DEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGAL 121 (347)
T ss_dssp CCEEECTTCEEEEEEEET-TEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCE
T ss_pred ceEEEccCCeEEEEEecC-CCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCe
Confidence 3567788998444332 2 26899999998775 4455566777888877 566665 677 999999532223
Q ss_pred eeEEee-cCc--------ceEEEEEeecCCeEEEEecCCCCeEEEEecC-CCCeEEE--EEe--cCceEEEEECCcE--E
Q psy505 87 EQIYEN-SQE--------DVCIVERLFSSSLVAVVSLSSPRKLTVCHFK-RGSEICN--YSF--SNTILAVKLNRKK--E 150 (161)
Q Consensus 87 ~~~~~~-~~~--------~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~-~~~~i~~--l~~--~~~V~~v~~~~~~--~ 150 (161)
..+... +.+ ...+..++|+|++..++++..++.|++||+. +++.... +.. ...+..++|+|++ +
T Consensus 122 ~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l 201 (347)
T 3hfq_A 122 TLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYA 201 (347)
T ss_dssp EEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEE
T ss_pred eecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEE
Confidence 222211 110 1136678999988777777778899999998 5654322 222 2368889999983 5
Q ss_pred EEE
Q psy505 151 EEE 153 (161)
Q Consensus 151 vv~ 153 (161)
+++
T Consensus 202 ~v~ 204 (347)
T 3hfq_A 202 FLA 204 (347)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 147
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.22 E-value=2.4e-10 Score=88.73 Aligned_cols=113 Identities=11% Similarity=0.035 Sum_probs=77.9
Q ss_pred eeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccC------ccceeee------eEEEecCC----------
Q psy505 16 GICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHD------SPLAALA------SLSVGTKS---------- 73 (161)
Q Consensus 16 ~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~------~~V~~l~------~lasgs~d---------- 73 (161)
+...++++|||..+++++.. ++.|.+||+.+++.+..+..+. ..+.+++ +|++++.+
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~-~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~ 122 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNH-YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVV 122 (349)
T ss_dssp SSCEEEECTTSSEEEEEETT-TTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred CCceeEECCCCCEEEEEeCC-CCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEccccccccccccc
Confidence 35567788999866555543 8999999999998887776432 2366666 67777754
Q ss_pred --c-eEEEEeCCcCcee--eEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEE
Q psy505 74 --G-YRLFSLNSIDTLE--QIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYS 135 (161)
Q Consensus 74 --g-iriwd~~~~~~~~--~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~ 135 (161)
+ |.+||+++++... ..+..+. .+.+++|+|++..++++ +.|.+||.++++.+..+.
T Consensus 123 ~~~~i~~~d~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~l~~~~---~~i~~~d~~~~~~~~~~~ 183 (349)
T 1jmx_B 123 KPPRLEVFSTADGLEAKPVRTFPMPR---QVYLMRAADDGSLYVAG---PDIYKMDVKTGKYTVALP 183 (349)
T ss_dssp CCCEEEEEEGGGGGGBCCSEEEECCS---SCCCEEECTTSCEEEES---SSEEEECTTTCCEEEEEC
T ss_pred CCCeEEEEECCCccccceeeeccCCC---cccceeECCCCcEEEcc---CcEEEEeCCCCceecccc
Confidence 6 9999998854332 2222222 25577899988755532 349999999999877664
No 148
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.21 E-value=4.4e-11 Score=102.89 Aligned_cols=134 Identities=14% Similarity=0.065 Sum_probs=96.0
Q ss_pred eeEEeecCCCceEEEEcCCCCcceEEEEEcCCCC--ceeeeeccCccceeee------eEEEecCCceEEEEeCCcCcee
Q psy505 16 GICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLH--AKTMIPAHDSPLAALA------SLSVGTKSGYRLFSLNSIDTLE 87 (161)
Q Consensus 16 ~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~--~~~~l~~H~~~V~~l~------~lasgs~dgiriwd~~~~~~~~ 87 (161)
++..++++|||++|++++ ++.|++||+.+++ .+..+..|...+.+++ +||.++++.|++||+.+++..
T Consensus 110 ~v~~~~~SpDg~~l~~~~---~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~- 185 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPL---GGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQM- 185 (741)
T ss_dssp ESCCCEECTTSSEEEEEE---TTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEE-
T ss_pred CcceeEECCCCCEEEEEe---CCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEE-
Confidence 477889999999999865 4899999999883 4567888888898888 788888666999999887543
Q ss_pred eEEeecCcce--------------EEEEEeecCCeEEEEecCCCC---------------------------------eE
Q psy505 88 QIYENSQEDV--------------CIVERLFSSSLVAVVSLSSPR---------------------------------KL 120 (161)
Q Consensus 88 ~~~~~~~~~~--------------~v~~~~fs~~~~~~~s~~~d~---------------------------------~i 120 (161)
.+...+...+ .+..++||||+..++.++.|+ .|
T Consensus 186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 3333222111 024678999886665543333 78
Q ss_pred EEEecCC-CCeEEEE---EecCceEEEEECCc--EEEEEe
Q psy505 121 TVCHFKR-GSEICNY---SFSNTILAVKLNRK--KEEEED 154 (161)
Q Consensus 121 ~iWD~~~-~~~i~~l---~~~~~V~~v~~~~~--~~vv~~ 154 (161)
.+||+.+ ++..... .+...+.+++| || .+++..
T Consensus 266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~ 304 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQR 304 (741)
T ss_dssp EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEE
T ss_pred EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEE
Confidence 9999998 8765433 14467899999 97 455443
No 149
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.20 E-value=2.5e-10 Score=88.07 Aligned_cols=131 Identities=15% Similarity=0.125 Sum_probs=90.7
Q ss_pred eEEeecCCCceEEEEcCC-----------CCcceEEEEEcCCCCceeeeeccCccceeee------eEEEecCCc-eEEE
Q psy505 17 ICCLCVNSDNCYLAYPGS-----------NSIGEVQIFDADNLHAKTMIPAHDSPLAALA------SLSVGTKSG-YRLF 78 (161)
Q Consensus 17 v~~~~~~~d~~~la~~g~-----------~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~------~lasgs~dg-iriw 78 (161)
+..++++|||.+++++.. . ++.|.+||+.+++.+..+... ..+.+++ +|+++ ++ +++|
T Consensus 84 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~--~~~i~~~ 159 (337)
T 1pby_B 84 LFGAALSPDGKTLAIYESPVRLELTHFEVQ-PTRVALYDAETLSRRKAFEAP-RQITMLAWARDGSKLYGL--GRDLHVM 159 (337)
T ss_dssp TTCEEECTTSSEEEEEEEEEEECSSCEEEC-CCEEEEEETTTTEEEEEEECC-SSCCCEEECTTSSCEEEE--SSSEEEE
T ss_pred ccceEECCCCCEEEEEeccccccccccccc-CceEEEEECCCCcEEEEEeCC-CCcceeEECCCCCEEEEe--CCeEEEE
Confidence 446677899988877631 1 689999999998888777753 3456665 56555 46 9999
Q ss_pred EeCCcCceeeEEeec--C---------------------------------------------------c----------
Q psy505 79 SLNSIDTLEQIYENS--Q---------------------------------------------------E---------- 95 (161)
Q Consensus 79 d~~~~~~~~~~~~~~--~---------------------------------------------------~---------- 95 (161)
|+++++....+..++ . .
T Consensus 160 d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 239 (337)
T 1pby_B 160 DPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM 239 (337)
T ss_dssp ETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEEC
T ss_pred ECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCC
Confidence 998875432211111 0 0
Q ss_pred ceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEEecCceEEEEECCc--EEEEE
Q psy505 96 DVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYSFSNTILAVKLNRK--KEEEE 153 (161)
Q Consensus 96 ~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~~~~V~~v~~~~~--~~vv~ 153 (161)
......++|+|++..++.+ ++.|.+||+++++.+..+.....+.+++|+|+ .+++.
T Consensus 240 ~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 297 (337)
T 1pby_B 240 DVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLG 297 (337)
T ss_dssp SSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEE
T ss_pred CCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEE
Confidence 0012347899987655554 57999999999998888877778899999997 35554
No 150
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.20 E-value=1.3e-09 Score=86.32 Aligned_cols=133 Identities=13% Similarity=0.069 Sum_probs=95.6
Q ss_pred eecCCCceEEEEcCCCCcc--eEEEEEcCCCCceeeeeccCccceeee------eEEEecCCc-eEEEEeCCcCceeeEE
Q psy505 20 LCVNSDNCYLAYPGSNSIG--EVQIFDADNLHAKTMIPAHDSPLAALA------SLSVGTKSG-YRLFSLNSIDTLEQIY 90 (161)
Q Consensus 20 ~~~~~d~~~la~~g~~~dg--~v~iWd~~~~~~~~~l~~H~~~V~~l~------~lasgs~dg-iriwd~~~~~~~~~~~ 90 (161)
.+++|||.+|++.+.. +| .|.+||+.+++......+|...+.++. .|+.++.++ +++||+.+++.. .++
T Consensus 41 ~~~SpDg~~l~~~~~~-~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~-~~~ 118 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAF-DGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEEN-VVY 118 (388)
T ss_dssp CCBCTTSCEEEEEECT-TSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEE-EEE
T ss_pred ccCCCCCCEEEEEEcC-CCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcce-eee
Confidence 6789999999998763 67 488889999988777777776665444 788888887 999999998743 455
Q ss_pred eecCcceEEEEEeecCCeEEEEe----------------------cCCCCeEEEEecCCCCeEEEEEecCceEEEEECC-
Q psy505 91 ENSQEDVCIVERLFSSSLVAVVS----------------------LSSPRKLTVCHFKRGSEICNYSFSNTILAVKLNR- 147 (161)
Q Consensus 91 ~~~~~~~~v~~~~fs~~~~~~~s----------------------~~~d~~i~iWD~~~~~~i~~l~~~~~V~~v~~~~- 147 (161)
..+..........++|++..++. ...+..|.+||+++++..........+..++|+|
T Consensus 119 ~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~ 198 (388)
T 3pe7_A 119 QVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPY 198 (388)
T ss_dssp ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETT
T ss_pred echhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCC
Confidence 55543222234455888776652 2344689999999998655555677899999999
Q ss_pred cE--EEEEe
Q psy505 148 KK--EEEED 154 (161)
Q Consensus 148 ~~--~vv~~ 154 (161)
++ ++.+.
T Consensus 199 dg~~l~~~~ 207 (388)
T 3pe7_A 199 DDSTVAFCH 207 (388)
T ss_dssp EEEEEEEEE
T ss_pred CCCEEEEEE
Confidence 73 44444
No 151
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.20 E-value=2.3e-10 Score=102.93 Aligned_cols=132 Identities=10% Similarity=-0.039 Sum_probs=100.8
Q ss_pred eeEEeecCCCceEEEEcCCCCcceEE-EEEcCCCCceeeeeccCccceeee------eEEEecCCc-eEEEEeCCcCcee
Q psy505 16 GICCLCVNSDNCYLAYPGSNSIGEVQ-IFDADNLHAKTMIPAHDSPLAALA------SLSVGTKSG-YRLFSLNSIDTLE 87 (161)
Q Consensus 16 ~v~~~~~~~d~~~la~~g~~~dg~v~-iWd~~~~~~~~~l~~H~~~V~~l~------~lasgs~dg-iriwd~~~~~~~~ 87 (161)
.+..++++ ||..+++.+. ++.+. +||+.+++.. .+.+|...+.+++ +||+++.++ +++||+++++..
T Consensus 339 ~~~~~~~s-dg~~l~~~s~--~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~- 413 (1045)
T 1k32_A 339 RYVRRGGD-TKVAFIHGTR--EGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPT- 413 (1045)
T ss_dssp EEEEECSS-SEEEEEEEET--TEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE-
T ss_pred eEEeeeEc-CCCeEEEEEC--CCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceE-
Confidence 67889999 9999998775 67888 9999887654 4558888888888 899999998 999999998743
Q ss_pred eEEeecCcceEEEEEeecCCeEEEEecCC----------CCeEEEEecCCCCeEEEEE-ecCceEEEEECCc--EEEEEe
Q psy505 88 QIYENSQEDVCIVERLFSSSLVAVVSLSS----------PRKLTVCHFKRGSEICNYS-FSNTILAVKLNRK--KEEEED 154 (161)
Q Consensus 88 ~~~~~~~~~~~v~~~~fs~~~~~~~s~~~----------d~~i~iWD~~~~~~i~~l~-~~~~V~~v~~~~~--~~vv~~ 154 (161)
.+..+|... +..++|||++..++.++. ++.|++||+.+++ +..+. +...+.+++|+|+ .+++..
T Consensus 414 ~~~~~~~~~--v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s 490 (1045)
T 1k32_A 414 VIERSREAM--ITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLS 490 (1045)
T ss_dssp EEEECSSSC--CCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEE
T ss_pred EeccCCCCC--ccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEe
Confidence 555566543 567889999876665433 2489999999887 44443 5678899999998 355444
Q ss_pred c
Q psy505 155 E 155 (161)
Q Consensus 155 ~ 155 (161)
.
T Consensus 491 ~ 491 (1045)
T 1k32_A 491 Y 491 (1045)
T ss_dssp S
T ss_pred c
Confidence 3
No 152
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.16 E-value=3.8e-09 Score=83.33 Aligned_cols=136 Identities=10% Similarity=0.000 Sum_probs=85.7
Q ss_pred eEEeecCCCceEEEEcCCCCcceEEEEEcCCCCc------e------eee-eccCccceeee------eEEEec-CCc-e
Q psy505 17 ICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHA------K------TMI-PAHDSPLAALA------SLSVGT-KSG-Y 75 (161)
Q Consensus 17 v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~------~------~~l-~~H~~~V~~l~------~lasgs-~dg-i 75 (161)
+..++++|||.++++++.. ++.|++|++..... + ..+ ..+....++++ ++++++ .++ |
T Consensus 157 ~~~~~~spdg~~l~~~~~~-~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v 235 (361)
T 3scy_A 157 LHCVRITPDGKYLLADDLG-TDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTV 235 (361)
T ss_dssp EEEEEECTTSSEEEEEETT-TTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEE
T ss_pred ceEEEECCCCCEEEEEeCC-CCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeE
Confidence 4568889999877666653 88999999876442 1 111 22334456666 455444 567 9
Q ss_pred EEEEeCCcCceeeEEee--c-CcceEEEEEeecCCeEEE-EecCC-CCeEEEEecC--CCC--eEEEEEecCceEEEEEC
Q psy505 76 RLFSLNSIDTLEQIYEN--S-QEDVCIVERLFSSSLVAV-VSLSS-PRKLTVCHFK--RGS--EICNYSFSNTILAVKLN 146 (161)
Q Consensus 76 riwd~~~~~~~~~~~~~--~-~~~~~v~~~~fs~~~~~~-~s~~~-d~~i~iWD~~--~~~--~i~~l~~~~~V~~v~~~ 146 (161)
++||+++++. ...... . .+......++|+|++..+ ++... +++|.|||+. +++ .+..+.....+.+++|+
T Consensus 236 ~v~~~~~g~~-~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~s 314 (361)
T 3scy_A 236 IAFRYADGML-DEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIIT 314 (361)
T ss_dssp EEEEEETTEE-EEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEEC
T ss_pred EEEEecCCce-EEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEEC
Confidence 9999987642 122111 1 111224688999998655 55555 6899999985 455 33333334578899999
Q ss_pred Cc--EEEEEe
Q psy505 147 RK--KEEEED 154 (161)
Q Consensus 147 ~~--~~vv~~ 154 (161)
|+ .++++.
T Consensus 315 pdg~~l~~~~ 324 (361)
T 3scy_A 315 PNGKYLLVAC 324 (361)
T ss_dssp TTSCEEEEEE
T ss_pred CCCCEEEEEE
Confidence 98 366654
No 153
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.15 E-value=2e-10 Score=98.41 Aligned_cols=130 Identities=9% Similarity=0.032 Sum_probs=88.4
Q ss_pred eeEEeecCCCceEEEEcCCCCcceEEEEEcCC-----CCceeeeeccCcc--------------ceeee------eEEEe
Q psy505 16 GICCLCVNSDNCYLAYPGSNSIGEVQIFDADN-----LHAKTMIPAHDSP--------------LAALA------SLSVG 70 (161)
Q Consensus 16 ~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~-----~~~~~~l~~H~~~--------------V~~l~------~lasg 70 (161)
.+..++++|||..+|++ . |+.|++||+.+ ++.......+... +.+++ +||++
T Consensus 122 ~~~~~~~SpdG~~la~~-~--~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~ 198 (706)
T 2z3z_A 122 ETASLDFSPVGDRVAYV-R--NHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFY 198 (706)
T ss_dssp CCTTCEECTTSSEEEEE-E--TTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEE
T ss_pred cccCCcCCCCCCEEEEE-E--CCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEE
Confidence 35567789999999985 3 89999999998 8776655544443 35665 77777
Q ss_pred c---------------------------------CCc-eEEEEeCCcCceeeEEeecCcceEEEEEeecCCeEEEEecCC
Q psy505 71 T---------------------------------KSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSS 116 (161)
Q Consensus 71 s---------------------------------~dg-iriwd~~~~~~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~ 116 (161)
+ .+. +++||+++++.. .+..+..+...+..++|+|++..++.++.
T Consensus 199 ~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~-~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 277 (706)
T 2z3z_A 199 RMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTV-YLQTGEPKEKFLTNLSWSPDENILYVAEV 277 (706)
T ss_dssp EEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEE-ECCCCSCTTCEEEEEEECTTSSEEEEEEE
T ss_pred EECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceE-eeccCCCCceeEeeEEEECCCCEEEEEEe
Confidence 6 345 999999887633 33322222345788999999865555433
Q ss_pred CC-----eEEEEecCCCCeEEEEE-e--cC---ceEEEEECC--cE
Q psy505 117 PR-----KLTVCHFKRGSEICNYS-F--SN---TILAVKLNR--KK 149 (161)
Q Consensus 117 d~-----~i~iWD~~~~~~i~~l~-~--~~---~V~~v~~~~--~~ 149 (161)
++ +|.+||+.+++....+. . .. .+.+++|+| ++
T Consensus 278 ~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg 323 (706)
T 2z3z_A 278 NRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNN 323 (706)
T ss_dssp CTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSS
T ss_pred CCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCC
Confidence 43 89999999995444432 2 22 346789999 73
No 154
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.15 E-value=1.2e-09 Score=89.35 Aligned_cols=121 Identities=15% Similarity=0.211 Sum_probs=95.5
Q ss_pred CCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee----eEEEecCCc-eEEEEeCCcCcee
Q psy505 13 NPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA----SLSVGTKSG-YRLFSLNSIDTLE 87 (161)
Q Consensus 13 ~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~----~lasgs~dg-iriwd~~~~~~~~ 87 (161)
.+. |..++| |+.+|+++ . +|.|++||+.+......+..|+.++.++. -+|+++.|| +.+||+.++...
T Consensus 87 lp~-V~~l~f--d~~~L~v~-~--~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~- 159 (388)
T 1xip_A 87 IPD-VIFVCF--HGDQVLVS-T--RNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTK- 159 (388)
T ss_dssp CTT-EEEEEE--ETTEEEEE-E--SSEEEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEE-
T ss_pred CCC-eeEEEE--CCCEEEEE-c--CCcEEEEEchhhhccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCccc-
Confidence 445 899999 88899886 4 89999999999887778888888888877 588889999 999999876532
Q ss_pred eEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCe--EEEEE----------ecCceEEEEECCc
Q psy505 88 QIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSE--ICNYS----------FSNTILAVKLNRK 148 (161)
Q Consensus 88 ~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~--i~~l~----------~~~~V~~v~~~~~ 148 (161)
. +. ..+.+++|||++.+++. .|+++++|+...+++ ..++. +...|.+|.|.++
T Consensus 160 ~----~~--~~Vs~v~WSpkG~~vg~--~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~ 224 (388)
T 1xip_A 160 Q----LA--QNVTSFDVTNSQLAVLL--KDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSP 224 (388)
T ss_dssp E----EE--ESEEEEEECSSEEEEEE--TTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSS
T ss_pred c----cc--CCceEEEEcCCceEEEE--cCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecC
Confidence 2 22 23778999999965544 578999999987775 55661 3457999999876
No 155
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.14 E-value=3.1e-10 Score=95.49 Aligned_cols=127 Identities=12% Similarity=0.057 Sum_probs=86.0
Q ss_pred ceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccC-ccceeee-----eEEEecC---Cc-eEEEEeCC--
Q psy505 15 NGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHD-SPLAALA-----SLSVGTK---SG-YRLFSLNS-- 82 (161)
Q Consensus 15 ~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~-~~V~~l~-----~lasgs~---dg-iriwd~~~-- 82 (161)
..|.+++++|||+.||+++.. ||+++||++.+++. ..+..|. ..+.+++ ++++++. +. .+||.+..
T Consensus 22 ~~~~~~~~~~DG~~la~~s~~-~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~ 99 (582)
T 3o4h_A 22 VEKYSLQGVVDGDKLLVVGFS-EGSVNAYLYDGGET-VKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSR 99 (582)
T ss_dssp SCEEEEEEEETTTEEEEEEEE-TTEEEEEEEETTEE-EECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTS
T ss_pred cchheeecCCCCCeEEEEEcc-CCceeEEEEcCCCc-EeeecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccC
Confidence 358899999999999998764 89999999976655 4555554 5777766 5555554 33 78877654
Q ss_pred cCceeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEEecCceEEEEECCc
Q psy505 83 IDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYSFSNTILAVKLNRK 148 (161)
Q Consensus 83 ~~~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~~~~V~~v~~~~~ 148 (161)
......+...+ ...+.+++++++.+++++++.++. .|||++++++......+. .+++|+||
T Consensus 100 ~g~~~~l~~~~--~~~~~~~s~dg~~~~~~s~~~~~~-~l~d~~~g~~~~l~~~~~--~~~~~spD 160 (582)
T 3o4h_A 100 PGEEQRLEAVK--PMRILSGVDTGEAVVFTGATEDRV-ALYALDGGGLRELARLPG--FGFVSDIR 160 (582)
T ss_dssp TTCCEECTTSC--SBEEEEEEECSSCEEEEEECSSCE-EEEEEETTEEEEEEEESS--CEEEEEEE
T ss_pred CCccccccCCC--CceeeeeCCCCCeEEEEecCCCCc-eEEEccCCcEEEeecCCC--ceEEECCC
Confidence 22121222222 234556666677788888766654 499999997655555544 88999998
No 156
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.14 E-value=3.5e-10 Score=96.87 Aligned_cols=134 Identities=7% Similarity=-0.008 Sum_probs=92.7
Q ss_pred ceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee------eEEEecCCc-eEEEEeCC-----
Q psy505 15 NGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA------SLSVGTKSG-YRLFSLNS----- 82 (161)
Q Consensus 15 ~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~------~lasgs~dg-iriwd~~~----- 82 (161)
.++.+++++|| ..++++. |++|++||+.+++.. .+..|...+.+++ .||++ .|+ |++||+.+
T Consensus 82 ~~v~~~~~spd-~~~~~~~---~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~ 155 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT---QGGLVGFDMLARKVT-YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGM 155 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE---TTEEEEEETTTTEEE-EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCC
T ss_pred cCceeEEECCC-CeEEEEE---CCEEEEEECCCCceE-EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccC
Confidence 46889999999 5666543 799999999987654 4556677787777 77775 456 99999988
Q ss_pred cCceeeEEeecCcce------------EEEEEeecCCeEEEEecC---------------------------------CC
Q psy505 83 IDTLEQIYENSQEDV------------CIVERLFSSSLVAVVSLS---------------------------------SP 117 (161)
Q Consensus 83 ~~~~~~~~~~~~~~~------------~v~~~~fs~~~~~~~s~~---------------------------------~d 117 (161)
++.. .+...+...+ .+..+.||||+..++.++ .+
T Consensus 156 g~~~-~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~ 234 (706)
T 2z3z_A 156 SRAI-AVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHH 234 (706)
T ss_dssp CCCE-ESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCE
T ss_pred CCcE-EeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCe
Confidence 7654 2322222211 025778999887666553 44
Q ss_pred CeEEEEecCCCCeEEEEE---ecCceEEEEECCcE--EEEEec
Q psy505 118 RKLTVCHFKRGSEICNYS---FSNTILAVKLNRKK--EEEEDE 155 (161)
Q Consensus 118 ~~i~iWD~~~~~~i~~l~---~~~~V~~v~~~~~~--~vv~~~ 155 (161)
..|.+||+++++...... +...+.+++|+||+ +++...
T Consensus 235 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 277 (706)
T 2z3z_A 235 VTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEV 277 (706)
T ss_dssp EEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEE
T ss_pred eEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEe
Confidence 679999999988654332 23579999999983 555433
No 157
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.12 E-value=3.7e-10 Score=95.01 Aligned_cols=122 Identities=10% Similarity=0.043 Sum_probs=84.9
Q ss_pred eEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee------eEEEecCC----c-eEEEEeCCcCc
Q psy505 17 ICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA------SLSVGTKS----G-YRLFSLNSIDT 85 (161)
Q Consensus 17 v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~------~lasgs~d----g-iriwd~~~~~~ 85 (161)
+.++++++++..+++.. ++.+.|||+.++++......+. .+++ ++|+++.| + |++||+++|+.
T Consensus 114 ~~~~s~dg~~~~~~s~~---~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~ 187 (582)
T 3o4h_A 114 ILSGVDTGEAVVFTGAT---EDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL 187 (582)
T ss_dssp EEEEEECSSCEEEEEEC---SSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCC
T ss_pred eeeeCCCCCeEEEEecC---CCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCc
Confidence 44566555555555543 3445599999987655554433 4444 78877766 6 99999988864
Q ss_pred eeeEEeecCcceEEEEEeecCCeEEEEecCCCC--eEEEEecCCCCeEEEEE-ecCceEEEE--------ECCcE
Q psy505 86 LEQIYENSQEDVCIVERLFSSSLVAVVSLSSPR--KLTVCHFKRGSEICNYS-FSNTILAVK--------LNRKK 149 (161)
Q Consensus 86 ~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~--~i~iWD~~~~~~i~~l~-~~~~V~~v~--------~~~~~ 149 (161)
. .+.+|.. .+..++||||+..++++..++ .|.+||+.+++.. .+. +...|.++. |+||+
T Consensus 188 ~--~l~~~~~--~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg 257 (582)
T 3o4h_A 188 R--VFDSGEG--SFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDG 257 (582)
T ss_dssp E--EECCSSC--EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTS
T ss_pred e--EeecCCC--ccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCC
Confidence 3 3455543 467899999998888766666 8999999999876 443 445677777 99995
No 158
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.12 E-value=1e-10 Score=100.48 Aligned_cols=126 Identities=9% Similarity=0.061 Sum_probs=89.9
Q ss_pred EeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCc---cceeee------eEEEecC---------Cc-eEEEE
Q psy505 19 CLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDS---PLAALA------SLSVGTK---------SG-YRLFS 79 (161)
Q Consensus 19 ~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~---~V~~l~------~lasgs~---------dg-iriwd 79 (161)
.++++|||.+++. +. ||+|++||+.++++...+.+|.. .+.+++ +||+++. ++ |++||
T Consensus 20 ~~~~s~dg~~~~~-~~--d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d 96 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SA--DNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYD 96 (719)
T ss_dssp CCEESSSSEEEEE-CT--TSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred ccEECCCCeEEEE-cC--CCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEE
Confidence 5567889976665 44 89999999999998877777654 377776 7877776 67 99999
Q ss_pred eCCcCce--eeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEEe--cCce---------------
Q psy505 80 LNSIDTL--EQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYSF--SNTI--------------- 140 (161)
Q Consensus 80 ~~~~~~~--~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~--~~~V--------------- 140 (161)
+.+++.+ ..+ . .. +..++||||+..++.. .++.|++||+.++++...... ...|
T Consensus 97 ~~~g~~~~~~~l-~---~~--~~~~~~SPDG~~la~~-~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~ 169 (719)
T 1z68_A 97 LSNGEFVRGNEL-P---RP--IQYLCWSPVGSKLAYV-YQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLA 169 (719)
T ss_dssp TTTTEECCSSCC-C---SS--BCCEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTC
T ss_pred CCCCccccceec-C---cc--cccceECCCCCEEEEE-ECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeeccc
Confidence 9887641 122 1 12 4567899998777765 367999999999887543211 2223
Q ss_pred --EEEEECCc--EEEEEe
Q psy505 141 --LAVKLNRK--KEEEED 154 (161)
Q Consensus 141 --~~v~~~~~--~~vv~~ 154 (161)
.++.|||| .|+...
T Consensus 170 ~~~~~~wSPDG~~la~~~ 187 (719)
T 1z68_A 170 TKYALWWSPNGKFLAYAE 187 (719)
T ss_dssp SSCCEEECTTSSEEEEEE
T ss_pred CcccEEECCCCCEEEEEE
Confidence 48999998 455554
No 159
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.11 E-value=3.2e-10 Score=101.99 Aligned_cols=131 Identities=10% Similarity=0.046 Sum_probs=100.5
Q ss_pred eeEEeecC-CCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCc-cceeee-----eEEEecCCc-eE-EEEeCCcCce
Q psy505 16 GICCLCVN-SDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDS-PLAALA-----SLSVGTKSG-YR-LFSLNSIDTL 86 (161)
Q Consensus 16 ~v~~~~~~-~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~-~V~~l~-----~lasgs~dg-ir-iwd~~~~~~~ 86 (161)
++.+++++ |||..+|+.+ ++.|.+||+.+++. ..+..|.. .+.+++ .|+++++++ +. +||+.+++..
T Consensus 297 ~v~~~~~S~pdG~~la~~~---~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~sdg~~l~~~s~~~~l~~~~d~~~~~~~ 372 (1045)
T 1k32_A 297 SKFAEDFSPLDGDLIAFVS---RGQAFIQDVSGTYV-LKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE 372 (1045)
T ss_dssp GGGEEEEEECGGGCEEEEE---TTEEEEECTTSSBE-EECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred ccceeeecCCCCCEEEEEE---cCEEEEEcCCCCce-EEccCCCcceEEeeeEcCCCeEEEEECCCceEEEEECCCCCce
Confidence 47788899 9999999865 68999999987764 34677777 666665 577777777 88 9999876532
Q ss_pred eeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEE-EecCceEEEEECCc--EEEEEe
Q psy505 87 EQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNY-SFSNTILAVKLNRK--KEEEED 154 (161)
Q Consensus 87 ~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l-~~~~~V~~v~~~~~--~~vv~~ 154 (161)
.+. +|.. .+..++|||++..+++++.++.|++||+++++....+ .+...|.+++|+|| .++...
T Consensus 373 -~l~-~~~~--~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~ 439 (1045)
T 1k32_A 373 -KFE-ENLG--NVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGF 439 (1045)
T ss_dssp -ECC-CCCC--SEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEE
T ss_pred -Eec-CCcc--ceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEe
Confidence 333 5533 4678899999988887778889999999999987766 36778999999998 344443
No 160
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.10 E-value=1.2e-08 Score=79.83 Aligned_cols=137 Identities=12% Similarity=0.038 Sum_probs=85.1
Q ss_pred eeEEeecCCCceEEEEcCCCCcceEEEEEcC-CCCce--eeeeccCc-cceeee-------eEEEecCCc-eEEEEeCC-
Q psy505 16 GICCLCVNSDNCYLAYPGSNSIGEVQIFDAD-NLHAK--TMIPAHDS-PLAALA-------SLSVGTKSG-YRLFSLNS- 82 (161)
Q Consensus 16 ~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~-~~~~~--~~l~~H~~-~V~~l~-------~lasgs~dg-iriwd~~~- 82 (161)
.+..++++|||..+++ +.. ++.|++||+. +++.. ..+..+.+ ....++ +++++..++ +++|++..
T Consensus 142 ~~~~~~~spdg~l~v~-~~~-~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~ 219 (347)
T 3hfq_A 142 HIHYTDLTPDNRLAVI-DLG-SDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQ 219 (347)
T ss_dssp CEEEEEECTTSCEEEE-ETT-TTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred CceEEEECCCCcEEEE-eCC-CCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence 3667889999995444 443 8899999998 55432 22233222 445555 344456666 99999874
Q ss_pred -cCceeeEEe--ecCc----ceEEEEEeecCCeEEE-EecCCCCeEEEEecCC-C--CeEEEEEe-cCceEEEEECCc--
Q psy505 83 -IDTLEQIYE--NSQE----DVCIVERLFSSSLVAV-VSLSSPRKLTVCHFKR-G--SEICNYSF-SNTILAVKLNRK-- 148 (161)
Q Consensus 83 -~~~~~~~~~--~~~~----~~~v~~~~fs~~~~~~-~s~~~d~~i~iWD~~~-~--~~i~~l~~-~~~V~~v~~~~~-- 148 (161)
++ +..... .... ......++|+|++..+ ++...+++|.+||+.. + +.+..+.. ...+.+++|+|+
T Consensus 220 ~g~-~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~ 298 (347)
T 3hfq_A 220 TGA-FTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEA 298 (347)
T ss_dssp TTE-EEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSS
T ss_pred CCc-eEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCC
Confidence 43 211111 1111 1346789999998644 5655678999999973 2 33444443 456899999998
Q ss_pred EEEEEec
Q psy505 149 KEEEEDE 155 (161)
Q Consensus 149 ~~vv~~~ 155 (161)
.++++..
T Consensus 299 ~l~v~~~ 305 (347)
T 3hfq_A 299 FVVVVNQ 305 (347)
T ss_dssp EEEEEET
T ss_pred EEEEEEc
Confidence 3666543
No 161
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.10 E-value=3.9e-11 Score=103.13 Aligned_cols=134 Identities=7% Similarity=0.025 Sum_probs=89.4
Q ss_pred eeEEeecCCCceEEEEcCCC-------CcceEEEEEcCCCCce--eeeeccCccceeee------eEEEecCCceEEEEe
Q psy505 16 GICCLCVNSDNCYLAYPGSN-------SIGEVQIFDADNLHAK--TMIPAHDSPLAALA------SLSVGTKSGYRLFSL 80 (161)
Q Consensus 16 ~v~~~~~~~d~~~la~~g~~-------~dg~v~iWd~~~~~~~--~~l~~H~~~V~~l~------~lasgs~dgiriwd~ 80 (161)
++.+++++|||++||+++.. .|++|++||+.+++.+ ..+. ..+.+++ .||.++++.|++||+
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~---~~~~~~~~SPDG~~la~~~~~~i~~~~~ 137 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELP---RPIQYLCWSPVGSKLAYVYQNNIYLKQR 137 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC---SSBCCEEECSSTTCEEEEETTEEEEESS
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecC---cccccceECCCCCEEEEEECCeEEEEeC
Confidence 36788899999999986531 1589999999998763 2332 4566666 788887544999999
Q ss_pred CCcCceeeEEeecCcceE---------------EEEEeecCCeEEEEecCCCC---------------------------
Q psy505 81 NSIDTLEQIYENSQEDVC---------------IVERLFSSSLVAVVSLSSPR--------------------------- 118 (161)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~---------------v~~~~fs~~~~~~~s~~~d~--------------------------- 118 (161)
.+++.......++...+. ..+++||||+..++.++.|.
T Consensus 138 ~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~ 217 (719)
T 1z68_A 138 PGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKA 217 (719)
T ss_dssp TTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBT
T ss_pred CCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCC
Confidence 888754222223221110 13688999987776653331
Q ss_pred -------eEEEEecCCCCeE--EEEE-------ecCceEEEEECCcEEEE
Q psy505 119 -------KLTVCHFKRGSEI--CNYS-------FSNTILAVKLNRKKEEE 152 (161)
Q Consensus 119 -------~i~iWD~~~~~~i--~~l~-------~~~~V~~v~~~~~~~vv 152 (161)
+|++||+.+++.+ ..+. +...+.+++|+||+-++
T Consensus 218 g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~ 267 (719)
T 1z68_A 218 GAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVC 267 (719)
T ss_dssp TSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEE
T ss_pred CCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEE
Confidence 7999999988753 1221 34578999999995333
No 162
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.09 E-value=5.2e-09 Score=82.35 Aligned_cols=141 Identities=11% Similarity=0.021 Sum_probs=95.1
Q ss_pred eeEEeecCC-CceEEEEcCCCCcceEEEEEcCCCCceeeeeccC----------ccceeee-------eEEEecCCc-eE
Q psy505 16 GICCLCVNS-DNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHD----------SPLAALA-------SLSVGTKSG-YR 76 (161)
Q Consensus 16 ~v~~~~~~~-d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~----------~~V~~l~-------~lasgs~dg-ir 76 (161)
....++++| +|.++++.+.. ++.|++|| .+++.+..+.... ....+++ ++++.+.++ |+
T Consensus 144 ~P~~ia~~~~~g~lyv~d~~~-~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~ 221 (329)
T 3fvz_A 144 QPTDVAVEPSTGAVFVSDGYC-NSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQ 221 (329)
T ss_dssp SEEEEEECTTTCCEEEEECSS-CCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCcEEEEeCCCCeEEEEeCCC-CCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEE
Confidence 467888999 78888876422 78999999 5677777774322 2356666 566666777 99
Q ss_pred EEEeCCcCceeeEEeecCcceEEEEEeecCCeEEEEec-------CCCCeEEEEecCCCCeEEEEE----ecCceEEEEE
Q psy505 77 LFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSL-------SSPRKLTVCHFKRGSEICNYS----FSNTILAVKL 145 (161)
Q Consensus 77 iwd~~~~~~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~-------~~d~~i~iWD~~~~~~i~~l~----~~~~V~~v~~ 145 (161)
+||..+|+.+. .+...........++|+| +.++++. ..+++|++||..+++.+..+. ....+.++++
T Consensus 222 ~~~~~~G~~~~-~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~ 299 (329)
T 3fvz_A 222 CFKTDTKEFVR-EIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVA 299 (329)
T ss_dssp EEETTTCCEEE-EECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEE
T ss_pred EEECCCCcEEE-EEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEE
Confidence 99998887553 333222112355788999 4444332 345589999999999988874 3457899999
Q ss_pred CCcEEEEEe---ccceee
Q psy505 146 NRKKEEEED---EEEEKK 160 (161)
Q Consensus 146 ~~~~~vv~~---~~~~~~ 160 (161)
+|++.+.|. .++|++
T Consensus 300 ~~dG~lyvad~~~~~I~~ 317 (329)
T 3fvz_A 300 SEDGTVYIGDAHTNTVWK 317 (329)
T ss_dssp CTTSEEEEEESSSCCEEE
T ss_pred CCCCCEEEEECCCCEEEE
Confidence 999544443 345554
No 163
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.02 E-value=4.7e-08 Score=74.58 Aligned_cols=133 Identities=11% Similarity=0.038 Sum_probs=91.3
Q ss_pred ceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeee--ccCccceeee------eEEEecCCc-eEEEEeCCcCc
Q psy505 15 NGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIP--AHDSPLAALA------SLSVGTKSG-YRLFSLNSIDT 85 (161)
Q Consensus 15 ~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~--~H~~~V~~l~------~lasgs~dg-iriwd~~~~~~ 85 (161)
.....++++|+|.++++... ++.|.+||.. ++.+..+. ++...+++++ ++++.+.++ |++||.. ++.
T Consensus 121 ~~~~~i~~~~~g~l~v~~~~--~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~ 196 (286)
T 1q7f_A 121 QHPRGVTVDNKGRIIVVECK--VMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQY 196 (286)
T ss_dssp SCEEEEEECTTSCEEEEETT--TTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCE
T ss_pred CCceEEEEeCCCCEEEEECC--CCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCE
Confidence 35678888999987776554 7899999964 56666664 4445677777 566666666 9999974 443
Q ss_pred eeeEEeecCcceEEEEEeecCCeEEEEecCCCC-eEEEEecCCCCeEEEEEec---CceEEEEECCc-EEEEE
Q psy505 86 LEQIYENSQEDVCIVERLFSSSLVAVVSLSSPR-KLTVCHFKRGSEICNYSFS---NTILAVKLNRK-KEEEE 153 (161)
Q Consensus 86 ~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~-~i~iWD~~~~~~i~~l~~~---~~V~~v~~~~~-~~vv~ 153 (161)
+ ..+..+........+++++++..+++...++ .|.+||. +++.+..+... ..+.+++++|+ .+.+.
T Consensus 197 ~-~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs 267 (286)
T 1q7f_A 197 L-RQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA 267 (286)
T ss_dssp E-EEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE
T ss_pred E-EEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE
Confidence 3 2333221112356788999888778776666 9999995 57777777542 34789999998 44444
No 164
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.01 E-value=4.8e-08 Score=76.80 Aligned_cols=136 Identities=10% Similarity=0.019 Sum_probs=93.9
Q ss_pred eeEEeecCCCceEEEEcCCCCcceEEEEEcCCCC-ceeee---------eccCccceeee-------eEEEec-CCc-eE
Q psy505 16 GICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLH-AKTMI---------PAHDSPLAALA-------SLSVGT-KSG-YR 76 (161)
Q Consensus 16 ~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~-~~~~l---------~~H~~~V~~l~-------~lasgs-~dg-ir 76 (161)
....++++|+|.++++... ++.|++||..... .+..+ .++-...++++ ++++.+ .++ |+
T Consensus 92 ~p~gia~d~~g~l~v~d~~--~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~ 169 (329)
T 3fvz_A 92 LPHGLSIDTDGNYWVTDVA--LHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIV 169 (329)
T ss_dssp SEEEEEECTTSCEEEEETT--TTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEE
T ss_pred CceEEEECCCCCEEEEECC--CCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEE
Confidence 4667888999987777554 7899999986542 55565 34444566666 556665 466 99
Q ss_pred EEEeCCcCceeeEEeecCc-------c-eEEEEEeecCC-eEEEEecCCCCeEEEEecCCCCeEEEEE---ecCceEEEE
Q psy505 77 LFSLNSIDTLEQIYENSQE-------D-VCIVERLFSSS-LVAVVSLSSPRKLTVCHFKRGSEICNYS---FSNTILAVK 144 (161)
Q Consensus 77 iwd~~~~~~~~~~~~~~~~-------~-~~v~~~~fs~~-~~~~~s~~~d~~i~iWD~~~~~~i~~l~---~~~~V~~v~ 144 (161)
+|| .+|..+. .+..... . .....++++|+ +...++...+++|++||..+|+.+..+. +...+.+++
T Consensus 170 ~~~-~~g~~~~-~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~ 247 (329)
T 3fvz_A 170 QFS-PSGKFVT-QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAIS 247 (329)
T ss_dssp EEC-TTSCEEE-EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEE
T ss_pred EEc-CCCCEEE-EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceee
Confidence 999 4565443 3321110 0 12457889997 7888887788899999999999988885 346789999
Q ss_pred ECCcEEEEEecc
Q psy505 145 LNRKKEEEEDEE 156 (161)
Q Consensus 145 ~~~~~~vv~~~~ 156 (161)
|+| +++++.+.
T Consensus 248 ~~p-g~~~~~~g 258 (329)
T 3fvz_A 248 YIP-GFLFAVNG 258 (329)
T ss_dssp EET-TEEEEEEC
T ss_pred ecC-CEEEEeCC
Confidence 999 44444443
No 165
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.00 E-value=3.7e-08 Score=78.33 Aligned_cols=133 Identities=12% Similarity=-0.022 Sum_probs=84.6
Q ss_pred eEEeecCCCceEEEEcCCCCcceEEEEEcC-CCCceeeee--ccCccceeee--------eEEEec-------------C
Q psy505 17 ICCLCVNSDNCYLAYPGSNSIGEVQIFDAD-NLHAKTMIP--AHDSPLAALA--------SLSVGT-------------K 72 (161)
Q Consensus 17 v~~~~~~~d~~~la~~g~~~dg~v~iWd~~-~~~~~~~l~--~H~~~V~~l~--------~lasgs-------------~ 72 (161)
+..++++|||.+|++++. + .|.+||+. +++...... .+ +...+++ ++++++ .
T Consensus 42 ~~~~a~spdg~~l~~~~~--~-~v~~~~~~~~g~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~ 117 (365)
T 1jof_A 42 ISWMTFDHERKNIYGAAM--K-KWSSFAVKSPTEIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp CSEEEECTTSSEEEEEEB--T-EEEEEEEEETTEEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred CcEEEECCCCCEEEEEcc--c-eEEEEEECCCCCEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecC
Confidence 456778999998877654 5 99999997 776654332 12 2244444 244553 5
Q ss_pred Cc-eEEEEeC-CcCceeeEEee--cCcceEEEEEeecCCeEE-EEecCCCCeEEEEecC-CCCeE--EEEEe---cCceE
Q psy505 73 SG-YRLFSLN-SIDTLEQIYEN--SQEDVCIVERLFSSSLVA-VVSLSSPRKLTVCHFK-RGSEI--CNYSF---SNTIL 141 (161)
Q Consensus 73 dg-iriwd~~-~~~~~~~~~~~--~~~~~~v~~~~fs~~~~~-~~s~~~d~~i~iWD~~-~~~~i--~~l~~---~~~V~ 141 (161)
+| +++|++. +|+.. ..... +.....+.+++|+|++.. .++...+++|++||+. +++.. ..+.. ...+.
T Consensus 118 ~g~v~v~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~ 196 (365)
T 1jof_A 118 AGYGNVFSVSETGKLE-KNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp CCEEEEEEECTTCCEE-EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred CceEEEEccCCCCcCc-ceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence 77 9999997 45432 22221 111224678899998853 3444456799999998 77753 33432 35689
Q ss_pred EEEECCcE--EEEEe
Q psy505 142 AVKLNRKK--EEEED 154 (161)
Q Consensus 142 ~v~~~~~~--~vv~~ 154 (161)
.++|+|++ ++++.
T Consensus 197 ~~~~spdg~~l~v~~ 211 (365)
T 1jof_A 197 WVAMHPTGNYLYALM 211 (365)
T ss_dssp EEEECTTSSEEEEEE
T ss_pred EeEECCCCCEEEEEE
Confidence 99999983 55554
No 166
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=98.99 E-value=7.5e-09 Score=81.59 Aligned_cols=130 Identities=10% Similarity=0.041 Sum_probs=81.0
Q ss_pred CceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCc--eeeee---ccCccceeee------eE-EEecC-Cc-eEEEE
Q psy505 14 PNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHA--KTMIP---AHDSPLAALA------SL-SVGTK-SG-YRLFS 79 (161)
Q Consensus 14 ~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~--~~~l~---~H~~~V~~l~------~l-asgs~-dg-iriwd 79 (161)
..+...++++|||.++++++.. ++.|++||+.+++. +..+. .|.....+++ +| ++... ++ |++|+
T Consensus 210 ~~~~~~~~~spdg~~l~v~~~~-~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~ 288 (361)
T 3scy_A 210 GSGPRHLIFNSDGKFAYLINEI-GGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFK 288 (361)
T ss_dssp TCCEEEEEECTTSSEEEEEETT-TCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEE
T ss_pred CCCCeEEEEcCCCCEEEEEcCC-CCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEE
Confidence 3457789999999988776653 89999999997754 23332 3334455666 55 44444 46 99999
Q ss_pred eC--CcCceeeEEeecCcceEEEEEeecCCeEEEE-ecCCCCeEEEE--ecCCCCeEEEE-E-ecCceEEEEEC
Q psy505 80 LN--SIDTLEQIYENSQEDVCIVERLFSSSLVAVV-SLSSPRKLTVC--HFKRGSEICNY-S-FSNTILAVKLN 146 (161)
Q Consensus 80 ~~--~~~~~~~~~~~~~~~~~v~~~~fs~~~~~~~-s~~~d~~i~iW--D~~~~~~i~~l-~-~~~~V~~v~~~ 146 (161)
+. +|+ +..+..... ......++|+|++..++ ++..++.|.+| |.++|+..... . .-..+.+|+|.
T Consensus 289 ~~~~~g~-~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 289 VDETNGT-LTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp ECTTTCC-EEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EcCCCCc-EEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 95 444 212211111 11345789999886443 44467899995 66677754332 1 23567778774
No 167
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=98.95 E-value=3.8e-09 Score=91.74 Aligned_cols=106 Identities=12% Similarity=0.059 Sum_probs=79.8
Q ss_pred eEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCcccee-----e--e----eEEEecCC---------c-e
Q psy505 17 ICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAA-----L--A----SLSVGTKS---------G-Y 75 (161)
Q Consensus 17 v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~-----l--~----~lasgs~d---------g-i 75 (161)
...++++|||.+++++ ||+|++||+.++++...+.+|...... + + +|+.++.+ + +
T Consensus 19 ~~~~~w~~dg~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ----ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCEEECSSSEEEEEE----TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccccEECCCCcEEEEc----CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 4467889999888873 799999999999998888988754332 2 3 77877775 4 6
Q ss_pred EEEEeCCcCceeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeE
Q psy505 76 RLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEI 131 (161)
Q Consensus 76 riwd~~~~~~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i 131 (161)
.+||+++++.. . +..+.+ .+...+||||+..++.. .++.|.+||+.+++..
T Consensus 95 ~~~d~~~~~~~-~-l~~~~~--~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~ 145 (740)
T 4a5s_A 95 DIYDLNKRQLI-T-EERIPN--NTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSY 145 (740)
T ss_dssp EEEETTTTEEC-C-SSCCCT--TEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCE
T ss_pred EEEECCCCcEE-E-cccCCC--cceeeEECCCCCEEEEE-ECCeEEEEECCCCceE
Confidence 79999998633 2 333333 36688999998777766 4678999999988854
No 168
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=98.93 E-value=4.2e-09 Score=91.50 Aligned_cols=127 Identities=6% Similarity=0.011 Sum_probs=86.2
Q ss_pred eecCCCceEEEEcCCCCc---------ceEEEEEcCCCCceeeeeccCccceeee------eEEEecCCceEEEEeCCcC
Q psy505 20 LCVNSDNCYLAYPGSNSI---------GEVQIFDADNLHAKTMIPAHDSPLAALA------SLSVGTKSGYRLFSLNSID 84 (161)
Q Consensus 20 ~~~~~d~~~la~~g~~~d---------g~v~iWd~~~~~~~~~l~~H~~~V~~l~------~lasgs~dgiriwd~~~~~ 84 (161)
++++|||++|++++. + |.+.+||+.++++. .+..|.+.+...+ .||.+++..|.+||+.+|+
T Consensus 67 ~~~Spdg~~l~~~~~--~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~ 143 (740)
T 4a5s_A 67 YSISPDGQFILLEYN--YVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLP 143 (740)
T ss_dssp EEECTTSSEEEEEEE--EEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSC
T ss_pred eEECCCCCEEEEEEC--CeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCc
Confidence 677999999998664 4 66779999998764 5777878888777 7888866559999998877
Q ss_pred ceeeEEeecCcceE---------------EEEEeecCCeEEEEecCCC--------------------------------
Q psy505 85 TLEQIYENSQEDVC---------------IVERLFSSSLVAVVSLSSP-------------------------------- 117 (161)
Q Consensus 85 ~~~~~~~~~~~~~~---------------v~~~~fs~~~~~~~s~~~d-------------------------------- 117 (161)
.......++...+. ...+.||||+..++..+.|
T Consensus 144 ~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~ 223 (740)
T 4a5s_A 144 SYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGA 223 (740)
T ss_dssp CEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTS
T ss_pred eEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcC
Confidence 54222223321110 0137899998766653111
Q ss_pred ----CeEEEEecCC---CC--eEEEEE-------ecCceEEEEECCcE
Q psy505 118 ----RKLTVCHFKR---GS--EICNYS-------FSNTILAVKLNRKK 149 (161)
Q Consensus 118 ----~~i~iWD~~~---~~--~i~~l~-------~~~~V~~v~~~~~~ 149 (161)
.+|+|||+.+ ++ ....+. +...+..++|+||+
T Consensus 224 ~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg 271 (740)
T 4a5s_A 224 VNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQE 271 (740)
T ss_dssp CCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETT
T ss_pred cCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCC
Confidence 1689999998 73 223443 33468899999984
No 169
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.92 E-value=2.4e-07 Score=71.93 Aligned_cols=136 Identities=11% Similarity=-0.018 Sum_probs=90.8
Q ss_pred eeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee------eEEEecCC-----ceEEEEeCCcC
Q psy505 16 GICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA------SLSVGTKS-----GYRLFSLNSID 84 (161)
Q Consensus 16 ~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~------~lasgs~d-----giriwd~~~~~ 84 (161)
...+++++|+|.++++... ++.|.+||..+++....+..+...+.+++ +++++..+ +|.+||.+++.
T Consensus 46 ~~~~~~~~~~g~l~~~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~ 123 (333)
T 2dg1_A 46 QLEGLNFDRQGQLFLLDVF--EGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN 123 (333)
T ss_dssp CEEEEEECTTSCEEEEETT--TCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred cccCcEECCCCCEEEEECC--CCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCE
Confidence 4567788899987766444 78999999998877655556677788887 56666665 49999998765
Q ss_pred ceeeEEeecCcceEEEEEeecCCeEEEEecCC------CCeEEEEecCCCCeEEEEEecCceEEEEECCc--EEEEEe
Q psy505 85 TLEQIYENSQEDVCIVERLFSSSLVAVVSLSS------PRKLTVCHFKRGSEICNYSFSNTILAVKLNRK--KEEEED 154 (161)
Q Consensus 85 ~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~------d~~i~iWD~~~~~~i~~l~~~~~V~~v~~~~~--~~vv~~ 154 (161)
.. .++........+..++++|++...++... .+.|..||..+++..........+.+++|+|+ .+.++.
T Consensus 124 ~~-~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~ 200 (333)
T 2dg1_A 124 LQ-DIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTE 200 (333)
T ss_dssp CE-EEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEE
T ss_pred EE-EEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEe
Confidence 32 23321111234678889998876666532 24577777766665433333456888999998 355554
No 170
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.91 E-value=1.3e-07 Score=74.51 Aligned_cols=148 Identities=9% Similarity=-0.082 Sum_probs=96.8
Q ss_pred cceEEecCCCCCCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccC-----ccceeee-----eEEEec
Q psy505 2 KVLHTIRDTPPNPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHD-----SPLAALA-----SLSVGT 71 (161)
Q Consensus 2 ~~~~~~~~~~~~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~-----~~V~~l~-----~lasgs 71 (161)
+++.++ ....+ ...++++|++...++... ++.|.+||+.+++....+.... .....++ ++++..
T Consensus 75 ~~~~~i-~~~~~---p~~i~~~~~g~lyv~~~~--~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~ 148 (328)
T 3dsm_A 75 KEVGRI-TGFTS---PRYIHFLSDEKAYVTQIW--DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCW 148 (328)
T ss_dssp CEEEEE-ECCSS---EEEEEEEETTEEEEEEBS--CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEEC
T ss_pred EEEEEc-CCCCC---CcEEEEeCCCeEEEEECC--CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcC
Confidence 456666 33334 445566678866665433 7999999999998887776443 1334454 344443
Q ss_pred -CCc-eEEEEeCCcCceeeEEeecCcceEEEEEeecCCeEEEEecCCC----------CeEEEEecCCCCeEEEEEec--
Q psy505 72 -KSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSP----------RKLTVCHFKRGSEICNYSFS-- 137 (161)
Q Consensus 72 -~dg-iriwd~~~~~~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d----------~~i~iWD~~~~~~i~~l~~~-- 137 (161)
.++ |.+||+++++....+..+.. ...+.++|++...+++..+ +.|.++|.++++.+..+..+
T Consensus 149 ~~~~~v~viD~~t~~~~~~i~~g~~----p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g 224 (328)
T 3dsm_A 149 SYQNRILKIDTETDKVVDELTIGIQ----PTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLG 224 (328)
T ss_dssp TTCCEEEEEETTTTEEEEEEECSSC----BCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTT
T ss_pred CCCCEEEEEECCCCeEEEEEEcCCC----ccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCC
Confidence 355 99999998765433322221 2356789988777766444 78999999999987777653
Q ss_pred CceEEEEECCc-EEEEEecccee
Q psy505 138 NTILAVKLNRK-KEEEEDEEEEK 159 (161)
Q Consensus 138 ~~V~~v~~~~~-~~vv~~~~~~~ 159 (161)
.....++|+|+ +.+.+....|+
T Consensus 225 ~~p~~la~~~d~~~lyv~~~~v~ 247 (328)
T 3dsm_A 225 DWPSEVQLNGTRDTLYWINNDIW 247 (328)
T ss_dssp CCCEEEEECTTSCEEEEESSSEE
T ss_pred CCceeEEEecCCCEEEEEccEEE
Confidence 47899999985 44444443554
No 171
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=98.88 E-value=1.5e-07 Score=71.71 Aligned_cols=140 Identities=11% Similarity=0.011 Sum_probs=91.6
Q ss_pred CceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeee------ccCccceeee-------eEEEec-CCc-eEEE
Q psy505 14 PNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIP------AHDSPLAALA-------SLSVGT-KSG-YRLF 78 (161)
Q Consensus 14 ~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~------~H~~~V~~l~-------~lasgs-~dg-iriw 78 (161)
.....+++++|+|.++++... ++.|++||.. ++.+..+. +|...+.+++ ++++.. .++ |++|
T Consensus 29 ~~~p~~v~~~~~g~l~v~~~~--~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 29 FTEPSGVAVNAQNDIIVADTN--NHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp BSCEEEEEECTTCCEEEEEGG--GTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred cCCCceEEECCCCCEEEEECC--CCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 345778888999987776444 7999999987 66666664 2334556655 344443 255 9999
Q ss_pred EeCCcCceeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEEe---cCceEEEEECCc-EEEEEe
Q psy505 79 SLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYSF---SNTILAVKLNRK-KEEEED 154 (161)
Q Consensus 79 d~~~~~~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~---~~~V~~v~~~~~-~~vv~~ 154 (161)
| .+++.+..+...+. .....++++|++...++...++.|.+||. .++.+..+.. ...+.+++++|+ .+.++.
T Consensus 106 d-~~g~~~~~~~~~~~--~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~ 181 (286)
T 1q7f_A 106 N-QYGQFVRKFGATIL--QHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISD 181 (286)
T ss_dssp C-TTSCEEEEECTTTC--SCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred C-CCCcEEEEecCccC--CCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCCEEEEE
Confidence 9 56664432211121 13567889998877777666789999996 4676666653 246899999997 444443
Q ss_pred --ccceee
Q psy505 155 --EEEEKK 160 (161)
Q Consensus 155 --~~~~~~ 160 (161)
.++|++
T Consensus 182 ~~~~~i~~ 189 (286)
T 1q7f_A 182 NRAHCVKV 189 (286)
T ss_dssp GGGTEEEE
T ss_pred CCCCEEEE
Confidence 335543
No 172
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=98.86 E-value=2.3e-08 Score=84.90 Aligned_cols=131 Identities=5% Similarity=-0.104 Sum_probs=87.3
Q ss_pred CceeEEeecCCCceEEEEcCCCCc----------ceEEEEEcCC------CCceeeee-ccCccceeee------eEEEe
Q psy505 14 PNGICCLCVNSDNCYLAYPGSNSI----------GEVQIFDADN------LHAKTMIP-AHDSPLAALA------SLSVG 70 (161)
Q Consensus 14 ~~~v~~~~~~~d~~~la~~g~~~d----------g~v~iWd~~~------~~~~~~l~-~H~~~V~~l~------~lasg 70 (161)
...+..++++|||+.|++++. | ..|++||+.+ ++. ..+. .|...+.+++ +||.+
T Consensus 129 ~~~~~~~~~spDg~~l~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~ 205 (662)
T 3azo_A 129 GLRWADPVLLPERGEVWCMAE--EFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWL 205 (662)
T ss_dssp CEEEEEEEEETTTTEEEEEEE--EECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEE
T ss_pred CccccCcEECCCCCEEEEEEe--cccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEE
Confidence 345778899999999998764 5 5899999998 544 4555 5666676666 67655
Q ss_pred cCC--------c-eEEEEeC-CcC--ceeeEEeecCcceEEEEEeecCCeEEEEecCCCC--eEEEEecCCCCeEEEEEe
Q psy505 71 TKS--------G-YRLFSLN-SID--TLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPR--KLTVCHFKRGSEICNYSF 136 (161)
Q Consensus 71 s~d--------g-iriwd~~-~~~--~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~--~i~iWD~~~~~~i~~l~~ 136 (161)
+.+ . |++||+. +|. ....+..++.. .+..+.|+||+..+++++.++ .|.+||+.+++......+
T Consensus 206 ~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~--~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~ 283 (662)
T 3azo_A 206 AWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEE--AIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRR 283 (662)
T ss_dssp EECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTB--CEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCC
T ss_pred ECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCc--eEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccc
Confidence 532 4 9999998 561 33345555433 366788999886555555556 677788877775433333
Q ss_pred cCc---------eEEEEECCcE
Q psy505 137 SNT---------ILAVKLNRKK 149 (161)
Q Consensus 137 ~~~---------V~~v~~~~~~ 149 (161)
... +..+.|+|++
T Consensus 284 ~~~~~~p~w~~~~~~~~~~~~~ 305 (662)
T 3azo_A 284 EEEFAGPLWTPGMRWFAPLANG 305 (662)
T ss_dssp SSBSSCCCCSTTCCSEEECTTS
T ss_pred cccccCccccccCceEeEeCCC
Confidence 221 5678888763
No 173
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.79 E-value=1.2e-07 Score=77.55 Aligned_cols=128 Identities=5% Similarity=0.069 Sum_probs=89.1
Q ss_pred eeEEeecCCCceEEEEcCCCCcceEEEEEcCCCC---------c-eeeeeccCccceeee----eEEEecCCc-eEEEEe
Q psy505 16 GICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLH---------A-KTMIPAHDSPLAALA----SLSVGTKSG-YRLFSL 80 (161)
Q Consensus 16 ~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~---------~-~~~l~~H~~~V~~l~----~lasgs~dg-iriwd~ 80 (161)
.+..|++++...+++++|. + .+++|++.+.+ . ......+.+ |..|+ +|+++ .++ +++||+
T Consensus 39 ~~nlLais~~~gll~a~~~--~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~fd~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASG--S-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCFHGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEET--T-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEEETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCC--C-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEECCCEEEEE-cCCcEEEEEc
Confidence 4777788888778887665 4 56679876443 1 112234666 88888 77777 667 999999
Q ss_pred CCcCceeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEEecCceEEEEECCcEEEEEecc
Q psy505 81 NSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYSFSNTILAVKLNRKKEEEEDEE 156 (161)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~~~~V~~v~~~~~~~vv~~~~ 156 (161)
++-... .....+..+ +.++.+.++.+++++ .|++|.+||+++++... ....|.+++|||+++++...+
T Consensus 114 ~sl~~~-~~~~~~~~~--v~~i~~~~p~~av~~--~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG~~vg~~d 181 (388)
T 1xip_A 114 EELSEF-RTVTSFEKP--VFQLKNVNNTLVILN--SVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQLAVLLKD 181 (388)
T ss_dssp SSTTCE-EEEEECSSC--EEEEEECSSEEEEEE--TTSEEEEEETTTCCEEE---EEESEEEEEECSSEEEEEETT
T ss_pred hhhhcc-Cccceeecc--eeeEEecCCCEEEEE--CCCCEEEEEccCCcccc---ccCCceEEEEcCCceEEEEcC
Confidence 775432 333444433 556667665555554 67899999999888643 457899999999998887775
No 174
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=98.77 E-value=3.6e-07 Score=73.12 Aligned_cols=138 Identities=10% Similarity=0.031 Sum_probs=80.0
Q ss_pred eEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceee-eeccCc-cceee----eeEEEecCCc-eEEEEeCC-cCceee
Q psy505 17 ICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTM-IPAHDS-PLAAL----ASLSVGTKSG-YRLFSLNS-IDTLEQ 88 (161)
Q Consensus 17 v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~-l~~H~~-~V~~l----~~lasgs~dg-iriwd~~~-~~~~~~ 88 (161)
...++++|||++|.++....+++|.+||+.+++.+.+ +..... .+.-. ..+++.+.|| +.+|+.+. ++....
T Consensus 110 p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~ 189 (361)
T 2oiz_A 110 DGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQ 189 (361)
T ss_dssp GGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEE
T ss_pred cceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeee
Confidence 3456778999988776531158999999999988877 543211 00000 1344555666 66666643 221100
Q ss_pred -------------------------EEeecCcceEEE-------------------------------EEeecCC-eEEE
Q psy505 89 -------------------------IYENSQEDVCIV-------------------------------ERLFSSS-LVAV 111 (161)
Q Consensus 89 -------------------------~~~~~~~~~~v~-------------------------------~~~fs~~-~~~~ 111 (161)
.+..+.+.+.+. .++|+|+ ..+.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~ly 269 (361)
T 2oiz_A 190 SRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMY 269 (361)
T ss_dssp EECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEE
T ss_pred ccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEE
Confidence 000000011111 1567765 3333
Q ss_pred EecC----------CCCeEEEEecCCCCeEEEEEecCceEEEEECCc--EEEEEec
Q psy505 112 VSLS----------SPRKLTVCHFKRGSEICNYSFSNTILAVKLNRK--KEEEEDE 155 (161)
Q Consensus 112 ~s~~----------~d~~i~iWD~~~~~~i~~l~~~~~V~~v~~~~~--~~vv~~~ 155 (161)
+... ..++|.+||+++++.+.++.-.. +.+++|+|+ ++++.-.
T Consensus 270 v~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~ 324 (361)
T 2oiz_A 270 VFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG 324 (361)
T ss_dssp EEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS
T ss_pred EEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC
Confidence 3321 13589999999999999988666 999999997 4554443
No 175
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=98.77 E-value=1.4e-07 Score=74.48 Aligned_cols=129 Identities=7% Similarity=-0.066 Sum_probs=84.4
Q ss_pred EeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee--------eEEE---------------------
Q psy505 19 CLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA--------SLSV--------------------- 69 (161)
Q Consensus 19 ~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~--------~las--------------------- 69 (161)
..+++|||..|++.+. ++.|++||+.+++....+..+...+.... +++.
T Consensus 85 ~~~~spdg~~l~~~~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T 3pe7_A 85 GGFLSPDDDALFYVKD--GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFY 162 (388)
T ss_dssp SCEECTTSSEEEEEET--TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHG
T ss_pred ceEEcCCCCEEEEEeC--CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhh
Confidence 4567899999999775 78999999999988777766665443222 2321
Q ss_pred -ecCCc-eEEEEeCCcCceeeEEeecCcceEEEEEeecC-CeEEEEecCC------CCeEEEEecCCCCeEEEEEec--C
Q psy505 70 -GTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSS-SLVAVVSLSS------PRKLTVCHFKRGSEICNYSFS--N 138 (161)
Q Consensus 70 -gs~dg-iriwd~~~~~~~~~~~~~~~~~~~v~~~~fs~-~~~~~~s~~~------d~~i~iWD~~~~~~i~~l~~~--~ 138 (161)
...++ +.+||+.+|+.. .+.. +.. .+..+.|+| ++..++.... ...|.+||...++........ .
T Consensus 163 ~~~~~~~l~~~d~~~g~~~-~l~~-~~~--~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~ 238 (388)
T 3pe7_A 163 FTKPCCRLMRVDLKTGEST-VILQ-ENQ--WLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGE 238 (388)
T ss_dssp GGCCCEEEEEEETTTCCEE-EEEE-ESS--CEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTE
T ss_pred ccCCcceEEEEECCCCceE-Eeec-CCc--cccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCc
Confidence 22345 999999988643 3433 322 356788999 8876554322 336888888766543222333 3
Q ss_pred ceEEEEECCcE--EEEE
Q psy505 139 TILAVKLNRKK--EEEE 153 (161)
Q Consensus 139 ~V~~v~~~~~~--~vv~ 153 (161)
.+...+|+||+ ++.+
T Consensus 239 ~~~~~~~spdg~~l~~~ 255 (388)
T 3pe7_A 239 SCTHEFWVPDGSALVYV 255 (388)
T ss_dssp EEEEEEECTTSSCEEEE
T ss_pred ccccceECCCCCEEEEE
Confidence 58889999983 5443
No 176
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=98.77 E-value=7.6e-07 Score=70.66 Aligned_cols=134 Identities=5% Similarity=-0.038 Sum_probs=82.5
Q ss_pred EEeecCCCceE--EEEcC-------C-----CCcceEEEEEcC-CCCceeeeec----cCccceeee------eEEEec-
Q psy505 18 CCLCVNSDNCY--LAYPG-------S-----NSIGEVQIFDAD-NLHAKTMIPA----HDSPLAALA------SLSVGT- 71 (161)
Q Consensus 18 ~~~~~~~d~~~--la~~g-------~-----~~dg~v~iWd~~-~~~~~~~l~~----H~~~V~~l~------~lasgs- 71 (161)
+.++++|||.. ++++. . . +|++++|++. +++....++. +...+.+++ +++++.
T Consensus 86 ~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~-~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~ 164 (365)
T 1jof_A 86 RANDADTNTRAIFLLAAKQPPYAVYANPFYKF-AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADL 164 (365)
T ss_dssp GGGCTTSCCEEEEEEECSSTTCCEEEEEESSS-CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred ccEEECCCCCEEEEEEecCCcceeccceeecC-CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcC
Confidence 35788999984 44432 1 3 8999999997 4665544442 455677776 555544
Q ss_pred CCc-eEEEEeC-CcCceeeE--EeecCcceEEEEEeecCCeEEE-EecCCCCeEEEEecC--CCCeE---EEEE-ec---
Q psy505 72 KSG-YRLFSLN-SIDTLEQI--YENSQEDVCIVERLFSSSLVAV-VSLSSPRKLTVCHFK--RGSEI---CNYS-FS--- 137 (161)
Q Consensus 72 ~dg-iriwd~~-~~~~~~~~--~~~~~~~~~v~~~~fs~~~~~~-~s~~~d~~i~iWD~~--~~~~i---~~l~-~~--- 137 (161)
.++ |++||+. +|+.. .. +....+......++|+|++..+ ++...+++|.+|+.. +|+.. ..+. .+
T Consensus 165 ~~~~v~~~~~~~~g~~~-~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~ 243 (365)
T 1jof_A 165 TANKLWTHRKLASGEVE-LVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGI 243 (365)
T ss_dssp TTTEEEEEEECTTSCEE-EEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTC
T ss_pred CCCEEEEEEECCCCCEE-EeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCc
Confidence 345 9999998 66532 22 2211101235678999988433 444456799999764 57653 2232 11
Q ss_pred ---C-------ceEEEE-ECCcE--EEEE
Q psy505 138 ---N-------TILAVK-LNRKK--EEEE 153 (161)
Q Consensus 138 ---~-------~V~~v~-~~~~~--~vv~ 153 (161)
. .+.+++ |+||+ +++.
T Consensus 244 ~g~~~~~~~~~~~~~i~~~spdG~~l~v~ 272 (365)
T 1jof_A 244 PDRDPETGKGLYRADVCALTFSGKYMFAS 272 (365)
T ss_dssp CCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred CCcccccccccccccEEEECCCCCEEEEE
Confidence 1 588999 99983 4443
No 177
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.71 E-value=1.3e-07 Score=74.46 Aligned_cols=137 Identities=9% Similarity=-0.022 Sum_probs=86.1
Q ss_pred eEEeecCCCceEEEEcCCC-CcceEEEEEcCCCCceeeeeccCccceee--e----eEEEecCCc-eEEEEeCCcCceee
Q psy505 17 ICCLCVNSDNCYLAYPGSN-SIGEVQIFDADNLHAKTMIPAHDSPLAAL--A----SLSVGTKSG-YRLFSLNSIDTLEQ 88 (161)
Q Consensus 17 v~~~~~~~d~~~la~~g~~-~dg~v~iWd~~~~~~~~~l~~H~~~V~~l--~----~lasgs~dg-iriwd~~~~~~~~~ 88 (161)
+..++++|||.+|++.... .+..|.+||+.+++......++......+ + .|+.++.++ +.+||+.+++.. .
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~-~ 116 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQ-V 116 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEE-E
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcE-E
Confidence 4456789999998886542 02468889999887644444433323223 2 788888887 999999887643 4
Q ss_pred EEeecCcceEE-EE----------------EeecCCeEEEEec-----CCCCeEEEEecCCCCeEEEEEecCceEEEEEC
Q psy505 89 IYENSQEDVCI-VE----------------RLFSSSLVAVVSL-----SSPRKLTVCHFKRGSEICNYSFSNTILAVKLN 146 (161)
Q Consensus 89 ~~~~~~~~~~v-~~----------------~~fs~~~~~~~s~-----~~d~~i~iWD~~~~~~i~~l~~~~~V~~v~~~ 146 (161)
+...+...... .. ..++|++..++.. ..+..|.+||+.+++..........+..+.|+
T Consensus 117 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~s 196 (396)
T 3c5m_A 117 IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYR 196 (396)
T ss_dssp EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEE
T ss_pred EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceEC
Confidence 54444321110 11 2345554433221 34568999999999876555667789999999
Q ss_pred C-c--EEEEEe
Q psy505 147 R-K--KEEEED 154 (161)
Q Consensus 147 ~-~--~~vv~~ 154 (161)
| + +++.+.
T Consensus 197 p~dg~~l~~~~ 207 (396)
T 3c5m_A 197 PFDDSTVGFCH 207 (396)
T ss_dssp TTEEEEEEEEE
T ss_pred CCCCCEEEEEe
Confidence 9 5 355544
No 178
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.66 E-value=4.5e-07 Score=78.15 Aligned_cols=136 Identities=9% Similarity=-0.039 Sum_probs=82.1
Q ss_pred ceeEEeecCCCceEEEEcCCC---CcceEEEEEcCCCCce-e-eeeccCccceeee------eEEEecCCc---------
Q psy505 15 NGICCLCVNSDNCYLAYPGSN---SIGEVQIFDADNLHAK-T-MIPAHDSPLAALA------SLSVGTKSG--------- 74 (161)
Q Consensus 15 ~~v~~~~~~~d~~~la~~g~~---~dg~v~iWd~~~~~~~-~-~l~~H~~~V~~l~------~lasgs~dg--------- 74 (161)
..+.+++++|||++||++.+. .+.+|++||+.+++.+ . .+.... ..+++ .|+.++.|.
T Consensus 121 ~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~--~~~~~wspDg~~l~~~~~d~~~~~~~~~~ 198 (695)
T 2bkl_A 121 VSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGK--YATPKWTPDSKGFYYEWLPTDPSIKVDER 198 (695)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCT--TCCCEECTTSSEEEEEECCCCTTSCGGGG
T ss_pred EEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCccc--ccceEEecCCCEEEEEEecCCCCCccccC
Confidence 357788999999999964221 1568999999999865 2 122211 13444 566555431
Q ss_pred -----eEEEEeCCcCce-eeEEeecCcceEEEEEeecCCeEEEEecCCCC----eEEEEecCCCCeEEEEEecCceEEEE
Q psy505 75 -----YRLFSLNSIDTL-EQIYENSQEDVCIVERLFSSSLVAVVSLSSPR----KLTVCHFKRGSEICNYSFSNTILAVK 144 (161)
Q Consensus 75 -----iriwd~~~~~~~-~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~----~i~iWD~~~~~~i~~l~~~~~V~~v~ 144 (161)
|++|++.++... ..+++...+...+....|||++..++..+.++ .|.+||..+++..........+....
T Consensus 199 ~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 278 (695)
T 2bkl_A 199 PGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVH 278 (695)
T ss_dssp GGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEE
T ss_pred CCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEE
Confidence 999999876521 13444433223466888999886555433333 68888876666443334445555555
Q ss_pred ECCcEEEE
Q psy505 145 LNRKKEEE 152 (161)
Q Consensus 145 ~~~~~~vv 152 (161)
++++.+++
T Consensus 279 ~~~g~l~~ 286 (695)
T 2bkl_A 279 AWKDRFYV 286 (695)
T ss_dssp EETTEEEE
T ss_pred ecCCcEEE
Confidence 65555333
No 179
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=98.66 E-value=1.3e-07 Score=80.32 Aligned_cols=126 Identities=9% Similarity=0.019 Sum_probs=82.2
Q ss_pred eecCCCceE-EEEcCCCCcceEEEEEcC--CCCceeeeec-----cCccceeee------eEEEecCC----------c-
Q psy505 20 LCVNSDNCY-LAYPGSNSIGEVQIFDAD--NLHAKTMIPA-----HDSPLAALA------SLSVGTKS----------G- 74 (161)
Q Consensus 20 ~~~~~d~~~-la~~g~~~dg~v~iWd~~--~~~~~~~l~~-----H~~~V~~l~------~lasgs~d----------g- 74 (161)
++.+|||.. |++++.. ++.|.+||+. +......+.. |...+.+++ .|++++.| .
T Consensus 84 ~~~SPDg~~~la~~~~~-~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~ 162 (662)
T 3azo_A 84 GVPRPAGGPLLVFTHFG-DQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRF 162 (662)
T ss_dssp EECCSSSSCEEEEEBTT-TCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEE
T ss_pred eeeecCCCeEEEEEECC-CCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeE
Confidence 443589998 8887653 5667777765 2033456665 666777776 77777765 4
Q ss_pred eEEEEeCC------cCceeeEEeecCcceEEEEEeecCCeEEEEecCCC--------CeEEEEecC-CC---CeEEEEEe
Q psy505 75 YRLFSLNS------IDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSP--------RKLTVCHFK-RG---SEICNYSF 136 (161)
Q Consensus 75 iriwd~~~------~~~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d--------~~i~iWD~~-~~---~~i~~l~~ 136 (161)
|++||+.+ ++. ..+...+. ..+..++||||+..++..+.+ ..|.+||+. ++ +.......
T Consensus 163 i~~~~~~~~~~~~~~~~-~~l~~~~~--~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~ 239 (662)
T 3azo_A 163 LAAVPLDGSAAADRSAV-RELSDDAH--RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG 239 (662)
T ss_dssp EEEEETTSTTTTCGGGS-EESSCSCS--SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE
T ss_pred EEEEECCCCccccCCce-eEEEecCC--CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC
Confidence 99999987 543 23330222 246678899998665543222 479999999 57 33333333
Q ss_pred -cCceEEEEECCcE
Q psy505 137 -SNTILAVKLNRKK 149 (161)
Q Consensus 137 -~~~V~~v~~~~~~ 149 (161)
...+..+.|+||+
T Consensus 240 ~~~~~~~~~~spdg 253 (662)
T 3azo_A 240 PEEAIAQAEWAPDG 253 (662)
T ss_dssp TTBCEEEEEECTTS
T ss_pred CCceEcceEECCCC
Confidence 5789999999984
No 180
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.60 E-value=1.3e-06 Score=66.93 Aligned_cols=139 Identities=12% Similarity=-0.031 Sum_probs=88.5
Q ss_pred eEEeecCCCceEEEEcCC-------------CCcceEEEEEcCCCCceeeeeccCccceeee------eEEEecCCc-eE
Q psy505 17 ICCLCVNSDNCYLAYPGS-------------NSIGEVQIFDADNLHAKTMIPAHDSPLAALA------SLSVGTKSG-YR 76 (161)
Q Consensus 17 v~~~~~~~d~~~la~~g~-------------~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~------~lasgs~dg-ir 76 (161)
+..++++|+|.++++... ...+.-+||.+.....+..+..+....++++ .+++.+.++ |+
T Consensus 117 ~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~ 196 (296)
T 3e5z_A 117 PNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATH 196 (296)
T ss_dssp CCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEE
T ss_pred CCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEE
Confidence 446778899988886221 0001124554443333455566666667777 457777777 99
Q ss_pred EEEeC-CcCc-e-eeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEEecCceEEEEE-CCc--EE
Q psy505 77 LFSLN-SIDT-L-EQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYSFSNTILAVKL-NRK--KE 150 (161)
Q Consensus 77 iwd~~-~~~~-~-~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~~~~V~~v~~-~~~--~~ 150 (161)
+||+. +|.. . ...+..+.. ....+++++++...++. ++.|.+||.. ++.+..+..+..+.++.| +|+ .|
T Consensus 197 ~~~~~~~g~~~~~~~~~~~~~~--~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~~~~~~f~~~d~~~L 271 (296)
T 3e5z_A 197 RYCLNARGETEYQGVHFTVEPG--KTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQTTSNLCFGGPEGRTL 271 (296)
T ss_dssp EEEECSSSCEEEEEEEECCSSS--CCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSCCCEEEEESTTSCEE
T ss_pred EEEECCCCcCcCCCeEeeCCCC--CCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCCceeEEEECCCCCEE
Confidence 99996 4442 0 123322221 23467889888766665 5789999987 888888875544999999 576 68
Q ss_pred EEEeccceee
Q psy505 151 EEEDEEEEKK 160 (161)
Q Consensus 151 vv~~~~~~~~ 160 (161)
.+...+.+.+
T Consensus 272 ~v~t~~~l~~ 281 (296)
T 3e5z_A 272 YMTVSTEFWS 281 (296)
T ss_dssp EEEETTEEEE
T ss_pred EEEcCCeEEE
Confidence 8887776654
No 181
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.56 E-value=1.4e-06 Score=67.70 Aligned_cols=125 Identities=10% Similarity=0.036 Sum_probs=81.5
Q ss_pred ceeEEeecCCCceEEEEcC--------CCCcceEEEEEcCCCCceeeeeccCccceeee------eEEEecCC---c---
Q psy505 15 NGICCLCVNSDNCYLAYPG--------SNSIGEVQIFDADNLHAKTMIPAHDSPLAALA------SLSVGTKS---G--- 74 (161)
Q Consensus 15 ~~v~~~~~~~d~~~la~~g--------~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~------~lasgs~d---g--- 74 (161)
..+...++ ||..+|+.. .. ++.|.+||+.+++.. .+ ..+.+++ .||.++.+ +
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~-~~~l~~~d~~~~~~~-~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~ 86 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKY-ENTIVIENLKNNARR-FI----ENATMPRISPDGKKIAFMRANEEKKVSE 86 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEE-EEEEEEEETTTCCEE-EE----ESCEEEEECTTSSEEEEEEEETTTTEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCc-cceEEEEeCCCCceE-Ec----ccCCCeEECCCCCEEEEEEeccCCCcce
Confidence 34556666 888888742 21 678999999988753 34 3344444 56655542 3
Q ss_pred eEEEEeCCcCceeeEEeecCcceEEEEEeecCCeEEEEecCC---------------------------CCeEEEEecCC
Q psy505 75 YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSS---------------------------PRKLTVCHFKR 127 (161)
Q Consensus 75 iriwd~~~~~~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~---------------------------d~~i~iWD~~~ 127 (161)
+.+||+.+++.. .+...+ . +..+.|+|++..++..+. ...|.+||+.+
T Consensus 87 l~~~~~~~g~~~-~l~~~~--~--~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~ 161 (347)
T 2gop_A 87 IWVADLETLSSK-KILEAK--N--IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTES 161 (347)
T ss_dssp EEEEETTTTEEE-EEEEES--E--EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTT
T ss_pred EEEEECCCCceE-EEEcCC--C--ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCC
Confidence 777888776533 343332 2 678899998754443321 25799999999
Q ss_pred CCeEEEEEecCceEEEEECCcEEEEE
Q psy505 128 GSEICNYSFSNTILAVKLNRKKEEEE 153 (161)
Q Consensus 128 ~~~i~~l~~~~~V~~v~~~~~~~vv~ 153 (161)
++.+..+..+ .+..+.|+|++++++
T Consensus 162 ~~~~~~l~~~-~~~~~~~spdg~~~~ 186 (347)
T 2gop_A 162 EEVIEEFEKP-RFSSGIWHRDKIVVN 186 (347)
T ss_dssp TEEEEEEEEE-TTCEEEEETTEEEEE
T ss_pred CeEEeeecCC-CcccccCCCCeEEEE
Confidence 8875555554 888999999994443
No 182
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=98.56 E-value=4.3e-07 Score=70.50 Aligned_cols=126 Identities=9% Similarity=-0.063 Sum_probs=89.2
Q ss_pred eEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee------eEEEecCCc-eEEEEeCCcCceeeE
Q psy505 17 ICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA------SLSVGTKSG-YRLFSLNSIDTLEQI 89 (161)
Q Consensus 17 v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~------~lasgs~dg-iriwd~~~~~~~~~~ 89 (161)
+.+++++|++..++..+. ++.++.| .++....+.++...+.+++ ++++++.++ |.+||.++++.. .+
T Consensus 8 ~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~-~~ 81 (333)
T 2dg1_A 8 LPTLFYSGKSNSAVPIIS--ESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK-RP 81 (333)
T ss_dssp CCBCCSCGGGGCSSCCCC--GGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-EE
T ss_pred cceeeecCCccceeEEee--cccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE-EE
Confidence 667888888877665444 8999999 3566677777777777777 666788887 999999887532 33
Q ss_pred EeecCcceEEEEEeecCCeEEEEecCCC----CeEEEEecCCCCeEEEEE---ecCceEEEEECCcEE
Q psy505 90 YENSQEDVCIVERLFSSSLVAVVSLSSP----RKLTVCHFKRGSEICNYS---FSNTILAVKLNRKKE 150 (161)
Q Consensus 90 ~~~~~~~~~v~~~~fs~~~~~~~s~~~d----~~i~iWD~~~~~~i~~l~---~~~~V~~v~~~~~~~ 150 (161)
...+.. .+..++++|++..+++...+ +.|.+||.++++....+. ....+.++.++|++.
T Consensus 82 ~~~~~~--~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~ 147 (333)
T 2dg1_A 82 FVSHKA--NPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG 147 (333)
T ss_dssp EECSSS--SEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC
T ss_pred eeCCCC--CcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCC
Confidence 323322 36788899988766665554 689999999887643332 235688999998843
No 183
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.55 E-value=9e-07 Score=76.38 Aligned_cols=110 Identities=14% Similarity=0.112 Sum_probs=71.8
Q ss_pred eeEEeecCCCceEEEEcCCCCcc----eEEEEEcCCCCceeeeeccCccceeee------eEEEecCC-c----------
Q psy505 16 GICCLCVNSDNCYLAYPGSNSIG----EVQIFDADNLHAKTMIPAHDSPLAALA------SLSVGTKS-G---------- 74 (161)
Q Consensus 16 ~v~~~~~~~d~~~la~~g~~~dg----~v~iWd~~~~~~~~~l~~H~~~V~~l~------~lasgs~d-g---------- 74 (161)
.+..++++|||++||++.+. +| +|++||+.+++.+.....+. .+.+++ .|+.++.+ +
T Consensus 126 ~~~~~~~SPDg~~la~~~~~-~G~~~~~i~v~d~~tg~~~~~~~~~~-~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~ 203 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSA-SGSDWVTIKFMKVDGAKELPDVLERV-KFSCMAWTHDGKGMFYNAYPQQDGKSDGTETS 203 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEE-TTCSCEEEEEEETTTTEEEEEEEEEE-CSCCEEECTTSSEEEEEECCCCSSCCSSSCCC
T ss_pred EEEEEEECCCCCEEEEEEcC-CCCceEEEEEEECCCCCCCcccccCc-ccceEEEEeCCCEEEEEEECCccccccccccc
Confidence 46788899999999987542 23 89999999998765432222 245555 55555443 2
Q ss_pred ------eEEEEeCCcCce-eeEEeecCcceEEEEEeecCCeEEEEecCC-----CCeEEEEecCC
Q psy505 75 ------YRLFSLNSIDTL-EQIYENSQEDVCIVERLFSSSLVAVVSLSS-----PRKLTVCHFKR 127 (161)
Q Consensus 75 ------iriwd~~~~~~~-~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~-----d~~i~iWD~~~ 127 (161)
|++|++.++... ..++++..+......+.|||++..++..+. ++.|.+||+.+
T Consensus 204 ~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~ 268 (710)
T 2xdw_A 204 TNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQ 268 (710)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGG
T ss_pred cCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcc
Confidence 899999876521 123444322334567889998865553321 57899999986
No 184
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.55 E-value=7.5e-06 Score=64.33 Aligned_cols=133 Identities=4% Similarity=-0.025 Sum_probs=84.3
Q ss_pred EEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee------eEEEecCCc-eEEEEeCCcCceeeEE
Q psy505 18 CCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA------SLSVGTKSG-YRLFSLNSIDTLEQIY 90 (161)
Q Consensus 18 ~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~------~lasgs~dg-iriwd~~~~~~~~~~~ 90 (161)
..++++.+..+++. .. ++.|.+||..+++.+.++... .....++ ++++...++ |.+||.++++....+-
T Consensus 47 ~~i~~~~~~lyv~~-~~--~~~v~viD~~t~~~~~~i~~~-~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~ 122 (328)
T 3dsm_A 47 QSMVIRDGIGWIVV-NN--SHVIFAIDINTFKEVGRITGF-TSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIE 122 (328)
T ss_dssp EEEEEETTEEEEEE-GG--GTEEEEEETTTCCEEEEEECC-SSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEE
T ss_pred eEEEEECCEEEEEE-cC--CCEEEEEECcccEEEEEcCCC-CCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEE
Confidence 45555544444444 33 799999999999998888643 3455555 344443566 9999998876443222
Q ss_pred eecCc--ceEEEEEeecCCeEEEEecC-CCCeEEEEecCCCCeEEEEEecCceEEEEECCc-EEEEEec
Q psy505 91 ENSQE--DVCIVERLFSSSLVAVVSLS-SPRKLTVCHFKRGSEICNYSFSNTILAVKLNRK-KEEEEDE 155 (161)
Q Consensus 91 ~~~~~--~~~v~~~~fs~~~~~~~s~~-~d~~i~iWD~~~~~~i~~l~~~~~V~~v~~~~~-~~vv~~~ 155 (161)
.+... ......+++..+. ..++.. .+++|.+||.++++.+..+........++++|+ ++.++..
T Consensus 123 ~g~~~~~~~~p~~i~~~~~~-lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~ 190 (328)
T 3dsm_A 123 CPDMDMESGSTEQMVQYGKY-VYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITD 190 (328)
T ss_dssp CTTCCTTTCBCCCEEEETTE-EEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBC
T ss_pred cCCccccCCCcceEEEECCE-EEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEEC
Confidence 22200 0012244554444 444443 377999999999998888876666678999986 5555544
No 185
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.48 E-value=3.3e-06 Score=65.28 Aligned_cols=127 Identities=8% Similarity=-0.046 Sum_probs=86.6
Q ss_pred eeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccC-ccceeee------eEEEecC-Cc-eEEEEeCCcCce
Q psy505 16 GICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHD-SPLAALA------SLSVGTK-SG-YRLFSLNSIDTL 86 (161)
Q Consensus 16 ~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~-~~V~~l~------~lasgs~-dg-iriwd~~~~~~~ 86 (161)
.+..+++.|+|.++++ + ++.|+.||. +|+.+..+..+. ..+.++. ++++.+. ++ +..+|. +|+.+
T Consensus 38 ~~~~~~~~pdG~ilvs-~---~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l 111 (276)
T 3no2_A 38 ECNSVAATKAGEILFS-Y---SKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVL 111 (276)
T ss_dssp CCCEEEECTTSCEEEE-C---BSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEE
T ss_pred CCcCeEECCCCCEEEe-C---CCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEE
Confidence 4566677889998883 3 678999999 899999998753 4666666 5665555 55 666665 56644
Q ss_pred eeEEee-c--CcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEEecCceEEEEECCcE
Q psy505 87 EQIYEN-S--QEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYSFSNTILAVKLNRKK 149 (161)
Q Consensus 87 ~~~~~~-~--~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~~~~V~~v~~~~~~ 149 (161)
.++-.. . ........+++.+++..+++.+.++.|..||.+ |+.+-++..+..+.++.+.+++
T Consensus 112 ~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g 176 (276)
T 3no2_A 112 SKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNG 176 (276)
T ss_dssp EEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTS
T ss_pred EEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCC
Confidence 332110 0 000011223467788778888788999999998 9998888766677777777763
No 186
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.47 E-value=4.7e-06 Score=64.42 Aligned_cols=118 Identities=13% Similarity=0.139 Sum_probs=80.9
Q ss_pred CCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccC-ccceeee------eEEEecCCceEEEEeCCcCceeeEEeecCc
Q psy505 23 NSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHD-SPLAALA------SLSVGTKSGYRLFSLNSIDTLEQIYENSQE 95 (161)
Q Consensus 23 ~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~-~~V~~l~------~lasgs~dgiriwd~~~~~~~~~~~~~~~~ 95 (161)
+|+ .++++++. |+.|.+||.++|+.+..+..|. ..+.++. +++ +..++|..||. +|+.+.+ +..+.
T Consensus 3 ~~~-~~lv~~~~--~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~-~~~~~- 75 (276)
T 3no2_A 3 SPQ-HLLVGGSG--WNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWN-IAAPA- 75 (276)
T ss_dssp CCC-EEEEECTT--CSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEE-EECCT-
T ss_pred CCC-cEEEeeCC--CCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEE-EcCCC-
Confidence 344 56666444 9999999999999999998876 4667666 555 34444999999 7875533 33321
Q ss_pred ceEEEEEeecCCeEEEEecCC-CCeEEEEecCCCCeEEEEEec-------CceEEEEECCc
Q psy505 96 DVCIVERLFSSSLVAVVSLSS-PRKLTVCHFKRGSEICNYSFS-------NTILAVKLNRK 148 (161)
Q Consensus 96 ~~~v~~~~fs~~~~~~~s~~~-d~~i~iWD~~~~~~i~~l~~~-------~~V~~v~~~~~ 148 (161)
...+.+..+.+++..+++.+. ++.|..+|. +|+.+.++... .....+++.++
T Consensus 76 ~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~ 135 (276)
T 3no2_A 76 GCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKK 135 (276)
T ss_dssp TCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTT
T ss_pred CccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCC
Confidence 234667778898888887655 667888886 78888777642 13445566665
No 187
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.46 E-value=2.9e-06 Score=65.03 Aligned_cols=127 Identities=4% Similarity=-0.213 Sum_probs=82.8
Q ss_pred eEEeecCCCce-EEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee------eEEEecCCc-eEEEEeCCcCceee
Q psy505 17 ICCLCVNSDNC-YLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA------SLSVGTKSG-YRLFSLNSIDTLEQ 88 (161)
Q Consensus 17 v~~~~~~~d~~-~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~------~lasgs~dg-iriwd~~~~~~~~~ 88 (161)
..+++++|+|. ++++... ++.|..||..++ ...+..+...+.+++ ++++.+.++ |.+||..+|+.. .
T Consensus 30 ~eg~~~d~~g~~l~~~~~~--~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~-~ 104 (296)
T 3e5z_A 30 TEGPVYVPARSAVIFSDVR--QNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWE-S 104 (296)
T ss_dssp EEEEEEEGGGTEEEEEEGG--GTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEE-E
T ss_pred ccCCeEeCCCCEEEEEeCC--CCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEE-E
Confidence 45777888997 4554333 899999999987 677777888888887 566665555 999999887632 3
Q ss_pred EEeecCc--ceEEEEEeecCCeEEEEec----C-------------CCCeEEEEecCCCCeEEEEEecCceEEEEECCcE
Q psy505 89 IYENSQE--DVCIVERLFSSSLVAVVSL----S-------------SPRKLTVCHFKRGSEICNYSFSNTILAVKLNRKK 149 (161)
Q Consensus 89 ~~~~~~~--~~~v~~~~fs~~~~~~~s~----~-------------~d~~i~iWD~~~~~~i~~l~~~~~V~~v~~~~~~ 149 (161)
+...... ...+..++++|++...++. . ..+.|..+|.. ++............+++|+|++
T Consensus 105 ~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg 183 (296)
T 3e5z_A 105 IADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSG 183 (296)
T ss_dssp EECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTS
T ss_pred EeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCC
Confidence 3322211 1123467889988777752 1 12356666655 5533222344677899999983
No 188
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.45 E-value=5.5e-06 Score=65.09 Aligned_cols=128 Identities=4% Similarity=-0.072 Sum_probs=80.6
Q ss_pred eecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeeeeEEEe-----------------------------
Q psy505 20 LCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALASLSVG----------------------------- 70 (161)
Q Consensus 20 ~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~~lasg----------------------------- 70 (161)
+.++|||..|++.+. ++.|.+||+.+++....+..+.....+-..|+..
T Consensus 86 ~~~spdg~~l~~~~~--~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~ 163 (396)
T 3c5m_A 86 GFISTDERAFFYVKN--ELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYH 163 (396)
T ss_dssp CEECTTSSEEEEEET--TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHH
T ss_pred ceECCCCCEEEEEEc--CCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeecc
Confidence 456889999988776 7799999999988766666565533221122221
Q ss_pred -cCCc-eEEEEeCCcCceeeEEeecCcceEEEEEeecC-CeE--EEEecCCC----CeEEEEecCCCCeEEEEEe--cCc
Q psy505 71 -TKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSS-SLV--AVVSLSSP----RKLTVCHFKRGSEICNYSF--SNT 139 (161)
Q Consensus 71 -s~dg-iriwd~~~~~~~~~~~~~~~~~~~v~~~~fs~-~~~--~~~s~~~d----~~i~iWD~~~~~~i~~l~~--~~~ 139 (161)
..+. +.+||+.+++.. .+.. +.. .+..+.|+| ++. ++++.... ..|.+||+..++....... ...
T Consensus 164 ~~~~~~l~~~d~~~g~~~-~~~~-~~~--~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~ 239 (396)
T 3c5m_A 164 TNPTCRLIKVDIETGELE-VIHQ-DTA--WLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGES 239 (396)
T ss_dssp TCCCEEEEEEETTTCCEE-EEEE-ESS--CEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEE
T ss_pred CCCcceEEEEECCCCcEE-eecc-CCc--ccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCcc
Confidence 2344 999999887643 3433 222 356788999 664 34443222 4699999876653322222 225
Q ss_pred eEEEEECCcE--EEEE
Q psy505 140 ILAVKLNRKK--EEEE 153 (161)
Q Consensus 140 V~~v~~~~~~--~vv~ 153 (161)
+..+.|+|++ ++.+
T Consensus 240 ~~~~~~spdg~~l~~~ 255 (396)
T 3c5m_A 240 CTHEFWIPDGSAMAYV 255 (396)
T ss_dssp EEEEEECTTSSCEEEE
T ss_pred ccceEECCCCCEEEEE
Confidence 8889999983 5554
No 189
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.44 E-value=4.2e-06 Score=62.77 Aligned_cols=133 Identities=11% Similarity=-0.014 Sum_probs=84.7
Q ss_pred ceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee------eEEEecCCc-eEEEEeCCcCcee
Q psy505 15 NGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA------SLSVGTKSG-YRLFSLNSIDTLE 87 (161)
Q Consensus 15 ~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~------~lasgs~dg-iriwd~~~~~~~~ 87 (161)
.....++++|+|..+++... ++.|.+||..+.........+.....+++ ++++...++ |.+||...+...
T Consensus 108 ~~p~~i~~~~~g~l~v~~~~--~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~- 184 (270)
T 1rwi_B 108 NYPEGLAVDTQGAVYVADRG--NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV- 184 (270)
T ss_dssp SSEEEEEECTTCCEEEEEGG--GTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEE-
T ss_pred CCCcceEECCCCCEEEEECC--CCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceE-
Confidence 34678888999987776443 78899998766544333333334566666 555555555 999998765422
Q ss_pred eEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEEe--cCceEEEEECCcE-EEEE
Q psy505 88 QIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYSF--SNTILAVKLNRKK-EEEE 153 (161)
Q Consensus 88 ~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~--~~~V~~v~~~~~~-~vv~ 153 (161)
.....+. .....+++++++...++...++.|.+||....... .+.. ...+.+++++|++ +.++
T Consensus 185 ~~~~~~~--~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~ 250 (270)
T 1rwi_B 185 VLPFTDI--TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST-VLPFTGLNTPLAVAVDSDRTVYVA 250 (270)
T ss_dssp ECCCSSC--CSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCE-ECCCCSCSCEEEEEECTTCCEEEE
T ss_pred eecccCC--CCceEEEECCCCCEEEEECCCCcEEEEcCCCCcce-eeccCCCCCceeEEECCCCCEEEE
Confidence 1111111 12567889998766676666788999998765533 2222 2578999999874 4444
No 190
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.41 E-value=1.9e-05 Score=67.38 Aligned_cols=120 Identities=14% Similarity=0.049 Sum_probs=85.0
Q ss_pred cCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee------eEEEecCCc-eEEEEeC--CcCceeeEEee
Q psy505 22 VNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA------SLSVGTKSG-YRLFSLN--SIDTLEQIYEN 92 (161)
Q Consensus 22 ~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~------~lasgs~dg-iriwd~~--~~~~~~~~~~~ 92 (161)
.+|++..+++... +++|.++|..+++.+.++..... +..+. ++.+++.|+ |.+||+. +++.+.++..|
T Consensus 163 ~d~~~~~~V~~~~--~~~V~viD~~t~~v~~~i~~g~~-p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G 239 (567)
T 1qks_A 163 WDLENLFSVTLRD--AGQIALIDGSTYEIKTVLDTGYA-VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG 239 (567)
T ss_dssp CCGGGEEEEEETT--TTEEEEEETTTCCEEEEEECSSC-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC
T ss_pred cCCCceEEEEeCC--CCeEEEEECCCCeEEEEEeCCCC-ccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC
Confidence 4555555555443 89999999999999988875433 34555 666778888 9999995 66655444333
Q ss_pred cCcceEEEEEeec----CCe-EEEEecCCCCeEEEEecCCCCeEEEEEec------------CceEEEEECCc
Q psy505 93 SQEDVCIVERLFS----SSL-VAVVSLSSPRKLTVCHFKRGSEICNYSFS------------NTILAVKLNRK 148 (161)
Q Consensus 93 ~~~~~~v~~~~fs----~~~-~~~~s~~~d~~i~iWD~~~~~~i~~l~~~------------~~V~~v~~~~~ 148 (161)
. .-..++|+ |++ .+.++...+++|.|+|..+.+.+..+.-. ..|.++.++++
T Consensus 240 ~----~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~ 308 (567)
T 1qks_A 240 S----EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHY 308 (567)
T ss_dssp S----EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSS
T ss_pred C----CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCC
Confidence 2 23578899 576 45556667789999999999998877521 25777887775
No 191
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.40 E-value=4.1e-05 Score=58.99 Aligned_cols=141 Identities=8% Similarity=-0.062 Sum_probs=86.9
Q ss_pred ceeEEeecCCCceEEEEcCCC-------CcceEEEEEcCCCCceeeeeccCccceeee-------eEEEecCCc-eEEEE
Q psy505 15 NGICCLCVNSDNCYLAYPGSN-------SIGEVQIFDADNLHAKTMIPAHDSPLAALA-------SLSVGTKSG-YRLFS 79 (161)
Q Consensus 15 ~~v~~~~~~~d~~~la~~g~~-------~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~-------~lasgs~dg-iriwd 79 (161)
.....++++|+|.+.++.... ..+.-+||.+.....+..+..+-...+.++ ++++.+.++ |.+||
T Consensus 98 ~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~ 177 (297)
T 3g4e_A 98 NRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFD 177 (297)
T ss_dssp EEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEE
T ss_pred CCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEe
Confidence 357788889999877754210 013345665553323333333333345555 445666666 99999
Q ss_pred e--CCcCce-eeEE-eecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEEec-CceEEEEEC-Cc--EEE
Q psy505 80 L--NSIDTL-EQIY-ENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYSFS-NTILAVKLN-RK--KEE 151 (161)
Q Consensus 80 ~--~~~~~~-~~~~-~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~~-~~V~~v~~~-~~--~~v 151 (161)
+ .+|... .+.+ ......-....+++++++...++....+.|..||.++|+.+..+..+ ..+.+++|. |+ .|.
T Consensus 178 ~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~ 257 (297)
T 3g4e_A 178 YDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMY 257 (297)
T ss_dssp ECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEE
T ss_pred ccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEE
Confidence 7 455421 1122 11111123567889888766666555678999999999999888865 789999997 65 666
Q ss_pred EEec
Q psy505 152 EEDE 155 (161)
Q Consensus 152 v~~~ 155 (161)
|...
T Consensus 258 vt~~ 261 (297)
T 3g4e_A 258 VTCA 261 (297)
T ss_dssp EEEB
T ss_pred EEcC
Confidence 6553
No 192
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.38 E-value=2.3e-05 Score=67.61 Aligned_cols=135 Identities=7% Similarity=0.025 Sum_probs=87.5
Q ss_pred CCceeEEeecCCCceEEEEcCCCC---cceEEEEEcCC------CC-ceeeeeccCccceeee-----eEE-EecCC---
Q psy505 13 NPNGICCLCVNSDNCYLAYPGSNS---IGEVQIFDADN------LH-AKTMIPAHDSPLAALA-----SLS-VGTKS--- 73 (161)
Q Consensus 13 ~~~~v~~~~~~~d~~~la~~g~~~---dg~v~iWd~~~------~~-~~~~l~~H~~~V~~l~-----~la-sgs~d--- 73 (161)
++..+..++++|||.+|++.+... +..|.+||+.+ +. ....+..|...+...- .|+ .+..+
T Consensus 231 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~ 310 (710)
T 2xdw_A 231 EPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPN 310 (710)
T ss_dssp CTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTT
T ss_pred CCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCC
Confidence 344467888899999988765310 45899999987 53 4677777776655432 333 33322
Q ss_pred c-eEEEEeCCcCc--eeeEEeecCcceEEEEEeecCCeEEEEecCCCC--eEEEEecCCCCeEEEEEe-cCceEEEEECC
Q psy505 74 G-YRLFSLNSIDT--LEQIYENSQEDVCIVERLFSSSLVAVVSLSSPR--KLTVCHFKRGSEICNYSF-SNTILAVKLNR 147 (161)
Q Consensus 74 g-iriwd~~~~~~--~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~--~i~iWD~~~~~~i~~l~~-~~~V~~v~~~~ 147 (161)
+ +.+||+.+++. ...+. .|.....+..+.|+++...+++...|+ .|.+||+.+|+.+..+.+ ...|.++.++|
T Consensus 311 ~~l~~~d~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~ 389 (710)
T 2xdw_A 311 YRLINIDFTDPEESKWKVLV-PEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQK 389 (710)
T ss_dssp CEEEEEETTSCCGGGCEEEE-CCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCT
T ss_pred CEEEEEeCCCCCcccceecc-CCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCC
Confidence 3 88889877642 23333 333223466778886555555554555 477789888888788875 46788899988
Q ss_pred c
Q psy505 148 K 148 (161)
Q Consensus 148 ~ 148 (161)
+
T Consensus 390 d 390 (710)
T 2xdw_A 390 K 390 (710)
T ss_dssp T
T ss_pred C
Confidence 6
No 193
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.32 E-value=8.6e-05 Score=55.88 Aligned_cols=138 Identities=6% Similarity=-0.085 Sum_probs=87.5
Q ss_pred ceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCcee-eeeccCccceeee------eEEEecCCc-eEEEEeCCcCce
Q psy505 15 NGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKT-MIPAHDSPLAALA------SLSVGTKSG-YRLFSLNSIDTL 86 (161)
Q Consensus 15 ~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~-~l~~H~~~V~~l~------~lasgs~dg-iriwd~~~~~~~ 86 (161)
..+..++++|+|.+.++... ++.|..||. +++... .+..+...+.+++ ++++...++ +..||. +++..
T Consensus 99 ~~~~~i~~~~~g~l~v~~~~--~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~ 174 (299)
T 2z2n_A 99 SAPYGITEGPNGDIWFTEMN--GNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDIT 174 (299)
T ss_dssp CCEEEEEECTTSCEEEEETT--TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE
T ss_pred CCceeeEECCCCCEEEEecC--CceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEE
Confidence 35778888999887776544 688999998 555432 2333445567776 445555555 999998 66532
Q ss_pred eeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEEec---CceEEEEECCc-EEEEEe--ccceee
Q psy505 87 EQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYSFS---NTILAVKLNRK-KEEEED--EEEEKK 160 (161)
Q Consensus 87 ~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~~---~~V~~v~~~~~-~~vv~~--~~~~~~ 160 (161)
.. ...........+++++++...++...++.|.+||. +++. ..+..+ ..+.++.++++ .+.++. .+.|.+
T Consensus 175 -~~-~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~ 250 (299)
T 2z2n_A 175 -EF-KIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI-TEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGR 250 (299)
T ss_dssp -EE-ECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE-EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEE
T ss_pred -Ee-eCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE-EEEECCCCCCCceeEEECCCCCEEEeccCCceEEE
Confidence 22 11111223567889887765666555678999999 7764 344333 67899999887 555553 345543
No 194
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.31 E-value=9.5e-06 Score=60.75 Aligned_cols=138 Identities=9% Similarity=-0.064 Sum_probs=84.0
Q ss_pred eeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeee-ccCccceeee------eEEEecCCc-eEEEEeCCcCcee
Q psy505 16 GICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIP-AHDSPLAALA------SLSVGTKSG-YRLFSLNSIDTLE 87 (161)
Q Consensus 16 ~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~-~H~~~V~~l~------~lasgs~dg-iriwd~~~~~~~~ 87 (161)
...+++++|+|.++++.. ++.|.+||..++.. ..+. .....+.+++ ++++...++ |.+||..+.....
T Consensus 68 ~p~~i~~~~~g~l~v~~~---~~~i~~~d~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~ 143 (270)
T 1rwi_B 68 QPQGLAVDGAGTVYVTDF---NNRVVTLAAGSNNQ-TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV 143 (270)
T ss_dssp SCCCEEECTTCCEEEEET---TTEEEEECTTCSCC-EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEE
T ss_pred CcceeEECCCCCEEEEcC---CCEEEEEeCCCceE-eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEe
Confidence 355677788888666533 57899999886544 3333 2334566666 455555555 9999865543221
Q ss_pred eEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEE-ecCceEEEEECCc-EEEEEe--ccceee
Q psy505 88 QIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYS-FSNTILAVKLNRK-KEEEED--EEEEKK 160 (161)
Q Consensus 88 ~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~-~~~~V~~v~~~~~-~~vv~~--~~~~~~ 160 (161)
...... .....+++++++...++...++.|.+||...+....... ....+.+++++++ .+.++. .++|++
T Consensus 144 -~~~~~~--~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~ 217 (270)
T 1rwi_B 144 -LPFTGL--NDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVK 217 (270)
T ss_dssp -CCCCSC--CSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEE
T ss_pred -eccccC--CCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEE
Confidence 111111 123467788877666665556789999988776432211 1267889999998 555555 345554
No 195
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.27 E-value=7.2e-06 Score=71.20 Aligned_cols=111 Identities=14% Similarity=0.070 Sum_probs=68.7
Q ss_pred eeEEeecCCCceEEEEcCCCCc----ceEEEEEcCCCCceeeeeccCccceee-----eeEEEecCC-------------
Q psy505 16 GICCLCVNSDNCYLAYPGSNSI----GEVQIFDADNLHAKTMIPAHDSPLAAL-----ASLSVGTKS------------- 73 (161)
Q Consensus 16 ~v~~~~~~~d~~~la~~g~~~d----g~v~iWd~~~~~~~~~l~~H~~~V~~l-----~~lasgs~d------------- 73 (161)
.+..++++|||++||++.+. + .+|++||+.+++.+... .+...+.++ ..|+.++.+
T Consensus 164 ~~~~~~~SPDG~~la~~~~~-~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~ 241 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQD-GGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNY 241 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEE-TTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTTSEEEEEECCCC--------CCC
T ss_pred EEEeEEECCCCCEEEEEEcC-CCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECCCEEEEEEecCcccccccccCCC
Confidence 56788899999999987541 2 46999999999875431 111111222 245544432
Q ss_pred -c-eEEEEeCCcCce-eeEEeecCcceEEEEEeecCCeEEEEecC-----CCCeEEEEecCCC
Q psy505 74 -G-YRLFSLNSIDTL-EQIYENSQEDVCIVERLFSSSLVAVVSLS-----SPRKLTVCHFKRG 128 (161)
Q Consensus 74 -g-iriwd~~~~~~~-~~~~~~~~~~~~v~~~~fs~~~~~~~s~~-----~d~~i~iWD~~~~ 128 (161)
. |++|++.++... ..+++...++..+..+.||||+..++..+ ..+.|.+||+.++
T Consensus 242 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~ 304 (741)
T 1yr2_A 242 NQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNG 304 (741)
T ss_dssp CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETT
T ss_pred CCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCC
Confidence 2 888998776421 13444433222466788999985444322 2458999999877
No 196
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.27 E-value=4.3e-05 Score=58.26 Aligned_cols=141 Identities=9% Similarity=0.001 Sum_probs=85.8
Q ss_pred eeEEeecCCCceEEEEcCCCCc---------------ceEEEEEcCCCCceeeeeccCccceeee-----------eEEE
Q psy505 16 GICCLCVNSDNCYLAYPGSNSI---------------GEVQIFDADNLHAKTMIPAHDSPLAALA-----------SLSV 69 (161)
Q Consensus 16 ~v~~~~~~~d~~~la~~g~~~d---------------g~v~iWd~~~~~~~~~l~~H~~~V~~l~-----------~las 69 (161)
.+..++++|+|.+.++... + +.|..||.. ++...... +....++++ ++++
T Consensus 118 ~~~~i~~d~~g~l~v~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~-~~~~~~~i~~~~~~d~dg~~l~v~ 193 (314)
T 1pjx_A 118 GCNDCAFDYEGNLWITAPA--GEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT-AFQFPNGIAVRHMNDGRPYQLIVA 193 (314)
T ss_dssp CCCEEEECTTSCEEEEECB--CBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE-EESSEEEEEEEECTTSCEEEEEEE
T ss_pred CCcCEEECCCCCEEEEecC--cccccccccccccCCCCeEEEECCC-CCEEEecc-CCCCcceEEEecccCCCCCEEEEE
Confidence 4678888999987776543 3 567777765 55433222 212222222 2344
Q ss_pred ecCCc-eEEEEeC-CcCce-eeEEee-cCcc-eEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEEec-CceEEE
Q psy505 70 GTKSG-YRLFSLN-SIDTL-EQIYEN-SQED-VCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYSFS-NTILAV 143 (161)
Q Consensus 70 gs~dg-iriwd~~-~~~~~-~~~~~~-~~~~-~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~~-~~V~~v 143 (161)
.+.++ |.+||.+ ++... ...+.. .... .....+++++++...++...++.|.+||.++++.+..+..+ ..+.++
T Consensus 194 ~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i 273 (314)
T 1pjx_A 194 ETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNL 273 (314)
T ss_dssp ETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEE
T ss_pred ECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeE
Confidence 45556 9999986 33211 011111 1111 23567889998877777555679999999988877777654 789999
Q ss_pred EECCcE--EEEEecc--ceee
Q psy505 144 KLNRKK--EEEEDEE--EEKK 160 (161)
Q Consensus 144 ~~~~~~--~vv~~~~--~~~~ 160 (161)
+|+|++ +.+...+ .|.+
T Consensus 274 ~~~~dg~~l~v~~~~~~~l~~ 294 (314)
T 1pjx_A 274 HFKPQTKTIFVTEHENNAVWK 294 (314)
T ss_dssp EECTTSSEEEEEETTTTEEEE
T ss_pred EECCCCCEEEEEeCCCCeEEE
Confidence 999873 6666555 5543
No 197
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.27 E-value=0.00013 Score=54.86 Aligned_cols=133 Identities=8% Similarity=-0.014 Sum_probs=86.1
Q ss_pred CceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCcee-eeeccCccceeee------eEEEecCCc-eEEEEeCCcCc
Q psy505 14 PNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKT-MIPAHDSPLAALA------SLSVGTKSG-YRLFSLNSIDT 85 (161)
Q Consensus 14 ~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~-~l~~H~~~V~~l~------~lasgs~dg-iriwd~~~~~~ 85 (161)
...+.+++++|+|...++... ++.|..||.. ++... .+..+...+.+++ ++++...++ +..||.. ++
T Consensus 14 ~~~~~~i~~d~~g~l~v~~~~--~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~- 88 (299)
T 2z2n_A 14 DTGPYGITVSDKGKVWITQHK--ANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GI- 88 (299)
T ss_dssp SCCEEEEEECTTSCEEEEETT--TTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-
T ss_pred CCCccceEECCCCCEEEEecC--CCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-Cc-
Confidence 346888999999988777554 6899999988 55332 2233456677776 455555556 9999975 33
Q ss_pred eeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEEe---cCceEEEEECCc-EEEEEe
Q psy505 86 LEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYSF---SNTILAVKLNRK-KEEEED 154 (161)
Q Consensus 86 ~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~---~~~V~~v~~~~~-~~vv~~ 154 (161)
.. .+...........+++++++...++...++.|.+||. +++.. .+.. ...+.++.++++ .+.++.
T Consensus 89 ~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~ 158 (299)
T 2z2n_A 89 IK-EYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR-EYELPNKGSYPSFITLGSDNALWFTE 158 (299)
T ss_dssp EE-EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE-EEECSSTTCCEEEEEECTTSCEEEEE
T ss_pred EE-EEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE-EecCCCCCCCCceEEEcCCCCEEEEe
Confidence 32 2221111224667889988766666555678999998 66543 3332 256889999987 444444
No 198
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=98.23 E-value=1e-05 Score=64.64 Aligned_cols=95 Identities=12% Similarity=0.068 Sum_probs=66.3
Q ss_pred cceEEEEEcCCCCceeeeeccCccceeee------eEEEec----------CCc-eEEEEeCCcCceeeEEeecC---cc
Q psy505 37 IGEVQIFDADNLHAKTMIPAHDSPLAALA------SLSVGT----------KSG-YRLFSLNSIDTLEQIYENSQ---ED 96 (161)
Q Consensus 37 dg~v~iWd~~~~~~~~~l~~H~~~V~~l~------~lasgs----------~dg-iriwd~~~~~~~~~~~~~~~---~~ 96 (161)
|+.|.+||..+++.+.++..+..+ .++ ++.+++ .++ |.+||..+++...++..+.. ..
T Consensus 30 d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g 107 (361)
T 2oiz_A 30 ESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGL 107 (361)
T ss_dssp GCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBC
T ss_pred cCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccC
Confidence 789999999999999999888777 555 444443 355 99999988776544322210 00
Q ss_pred eEEEEEeecCCeEEEEe-c-CCCCeEEEEecCCCCeEEE
Q psy505 97 VCIVERLFSSSLVAVVS-L-SSPRKLTVCHFKRGSEICN 133 (161)
Q Consensus 97 ~~v~~~~fs~~~~~~~s-~-~~d~~i~iWD~~~~~~i~~ 133 (161)
.....++|+|++..+.. . ..+++|.+||+++++.+.+
T Consensus 108 ~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~ 146 (361)
T 2oiz_A 108 NYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVED 146 (361)
T ss_dssp CCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEE
T ss_pred CCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEE
Confidence 11245789998854443 2 2367999999999998877
No 199
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.15 E-value=7.2e-05 Score=57.00 Aligned_cols=132 Identities=8% Similarity=-0.022 Sum_probs=80.6
Q ss_pred eEEeecCCCceEEEE-------cCCCCcceEEEEEcCCCCceeeee----ccCccceeee-------eEEEecCCceEEE
Q psy505 17 ICCLCVNSDNCYLAY-------PGSNSIGEVQIFDADNLHAKTMIP----AHDSPLAALA-------SLSVGTKSGYRLF 78 (161)
Q Consensus 17 v~~~~~~~d~~~la~-------~g~~~dg~v~iWd~~~~~~~~~l~----~H~~~V~~l~-------~lasgs~dgiriw 78 (161)
..+++++++|.++++ ... ++.|..||..+++...... ++...+.+++ ++++...+++.+|
T Consensus 20 ~~~~~~~~~g~l~~~~~~~~~~~~~--~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~ 97 (314)
T 1pjx_A 20 AEGPVFDKNGDFYIVAPEVEVNGKP--AGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVV 97 (314)
T ss_dssp CEEEEECTTSCEEEEETTCEETTEE--CCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred ccCceECCCCCEEEEEeccccCCCC--CCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEEEE
Confidence 456677888877776 333 7899999998887543221 2445566665 3444445568899
Q ss_pred EeCCcCceeeE-EeecC--cceEEEEEeecCCeEEEEecCCC---------------CeEEEEecCCCCeEEEEEecCce
Q psy505 79 SLNSIDTLEQI-YENSQ--EDVCIVERLFSSSLVAVVSLSSP---------------RKLTVCHFKRGSEICNYSFSNTI 140 (161)
Q Consensus 79 d~~~~~~~~~~-~~~~~--~~~~v~~~~fs~~~~~~~s~~~d---------------~~i~iWD~~~~~~i~~l~~~~~V 140 (161)
|.+ ++. ..+ ..... ....+..+++++++...++...+ +.|..||.. ++...........
T Consensus 98 d~~-g~~-~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~ 174 (314)
T 1pjx_A 98 QTD-GTF-EEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFP 174 (314)
T ss_dssp ETT-SCE-EECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSE
T ss_pred eCC-CCE-EEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCc
Confidence 987 653 222 21111 11235678889887666655433 468888876 6654433334566
Q ss_pred EEEEEC----CcE--EEEE
Q psy505 141 LAVKLN----RKK--EEEE 153 (161)
Q Consensus 141 ~~v~~~----~~~--~vv~ 153 (161)
.+++++ |++ +.++
T Consensus 175 ~~i~~~~~~d~dg~~l~v~ 193 (314)
T 1pjx_A 175 NGIAVRHMNDGRPYQLIVA 193 (314)
T ss_dssp EEEEEEECTTSCEEEEEEE
T ss_pred ceEEEecccCCCCCEEEEE
Confidence 888999 885 4444
No 200
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.13 E-value=3.5e-05 Score=59.70 Aligned_cols=126 Identities=7% Similarity=-0.010 Sum_probs=75.7
Q ss_pred eeEEeecCCCceEEEEcCCCCc------c-eEEEEEcCCCCceeeeeccCccceeee----eEEEecCC--------c-e
Q psy505 16 GICCLCVNSDNCYLAYPGSNSI------G-EVQIFDADNLHAKTMIPAHDSPLAALA----SLSVGTKS--------G-Y 75 (161)
Q Consensus 16 ~v~~~~~~~d~~~la~~g~~~d------g-~v~iWd~~~~~~~~~l~~H~~~V~~l~----~lasgs~d--------g-i 75 (161)
.+..++++||| +++++.. + . ..+||.+.+++ ...+..+ ..+.+++ .|+.++.+ . +
T Consensus 172 ~~~~~~~spdg-~~~~~~~--~~~~~~~~~~~~l~~~d~~~-~~~l~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l 246 (347)
T 2gop_A 172 RFSSGIWHRDK-IVVNVPH--REIIPQYFKFWDIYIWEDGK-EEKMFEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKL 246 (347)
T ss_dssp TTCEEEEETTE-EEEEEEC--CCSSCCSSCCEEEEEEETTE-EEEEEEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEE
T ss_pred CcccccCCCCe-EEEEEec--ccccccccccccEEEeCCCc-eEEeccC-cceeeECCCCCEEEEEEccccCCccccceE
Confidence 35567788999 5555432 2 2 44555554444 3455545 5555555 55544422 3 6
Q ss_pred EEEEeCCcCceeeEEeecCcceEEEE-EeecCCeEEEEecCCCCeEEEEecCCCCeEEEEEecCceEEEEECCcEEEEEe
Q psy505 76 RLFSLNSIDTLEQIYENSQEDVCIVE-RLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYSFSNTILAVKLNRKKEEEED 154 (161)
Q Consensus 76 riwd~~~~~~~~~~~~~~~~~~~v~~-~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~~~~V~~v~~~~~~~vv~~ 154 (161)
.+|| +++ ...+..++.. .+.. +.|+ ++ .+++++.++.++|| +.+++....+.....|.++.|+| +++++.
T Consensus 247 ~~~d--~~~-~~~l~~~~~~--~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~-~~~~~~ 317 (347)
T 2gop_A 247 YIYD--GKE-VMGILDEVDR--GVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE-IVVYLK 317 (347)
T ss_dssp EEEC--SSC-EEESSTTCCS--EEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEESS-SEEEEE
T ss_pred EEEC--CCc-eEeccccCCc--ccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeeeeC-cEEEEE
Confidence 6777 544 3334444432 3554 7888 88 55555567899999 87777644444567899999999 766654
Q ss_pred c
Q psy505 155 E 155 (161)
Q Consensus 155 ~ 155 (161)
.
T Consensus 318 ~ 318 (347)
T 2gop_A 318 E 318 (347)
T ss_dssp E
T ss_pred c
Confidence 3
No 201
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.13 E-value=8.7e-05 Score=64.08 Aligned_cols=138 Identities=10% Similarity=0.065 Sum_probs=81.7
Q ss_pred ceeEEeecCCCceEEEEc----CCCCcceEEEEEcCCCCcee-eeecc--Cccceeee--eEEEecCC------------
Q psy505 15 NGICCLCVNSDNCYLAYP----GSNSIGEVQIFDADNLHAKT-MIPAH--DSPLAALA--SLSVGTKS------------ 73 (161)
Q Consensus 15 ~~v~~~~~~~d~~~la~~----g~~~dg~v~iWd~~~~~~~~-~l~~H--~~~V~~l~--~lasgs~d------------ 73 (161)
..+..++++|||++||++ |+ .+.+|++||+.+|+.+. .+.+. .++.++ . .|+.++.+
T Consensus 129 ~~l~~~~~SpDg~~lAy~~~~~G~-~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~ 206 (693)
T 3iuj_A 129 TALDQLSFSRDGRILAYSLSLAGS-DWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTD 206 (693)
T ss_dssp CEEEEEEECTTSSEEEEEEECSSC-CEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------CC
T ss_pred EEEEEEEECCCCCEEEEEEecCCC-ceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccCC
Confidence 357788899999999974 33 14679999999998654 23332 344555 4 45555544
Q ss_pred -c-eEEEEeCCcCce-eeEEeecC-cceEEEEEeecCCeEEEE--e--cCCCCeEEEEecCCCC-eEEEEE-ecCceEEE
Q psy505 74 -G-YRLFSLNSIDTL-EQIYENSQ-EDVCIVERLFSSSLVAVV--S--LSSPRKLTVCHFKRGS-EICNYS-FSNTILAV 143 (161)
Q Consensus 74 -g-iriwd~~~~~~~-~~~~~~~~-~~~~v~~~~fs~~~~~~~--s--~~~d~~i~iWD~~~~~-~i~~l~-~~~~V~~v 143 (161)
. |++|++.++... ..+++... ++....++.|||++..++ + +..++.|.+||+.++. ....+. ..+.....
T Consensus 207 ~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~ 286 (693)
T 3iuj_A 207 QHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL 286 (693)
T ss_dssp CCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE
T ss_pred CcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE
Confidence 2 888998765321 13444332 233456788999886553 2 2234689999998763 334443 23333332
Q ss_pred -EECCcEEEEEe
Q psy505 144 -KLNRKKEEEED 154 (161)
Q Consensus 144 -~~~~~~~vv~~ 154 (161)
.-..+.+++..
T Consensus 287 ~~~~g~~l~~~t 298 (693)
T 3iuj_A 287 VDNKGSTLYLLT 298 (693)
T ss_dssp EEEETTEEEEEE
T ss_pred EeccCCEEEEEE
Confidence 22234555554
No 202
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.13 E-value=0.00056 Score=51.32 Aligned_cols=132 Identities=11% Similarity=0.001 Sum_probs=84.8
Q ss_pred ceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCcee-eeeccCccceeee------eEEEecCCc-eEEEEeCCcCce
Q psy505 15 NGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKT-MIPAHDSPLAALA------SLSVGTKSG-YRLFSLNSIDTL 86 (161)
Q Consensus 15 ~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~-~l~~H~~~V~~l~------~lasgs~dg-iriwd~~~~~~~ 86 (161)
....+++++++|...++... ++.|..||.. ++... .+..+...+.+++ ++++...++ |..||.. ++.
T Consensus 20 ~~p~~i~~d~~g~l~v~~~~--~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~- 94 (300)
T 2qc5_A 20 SGPYGITSSEDGKVWFTQHK--ANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF- 94 (300)
T ss_dssp CCEEEEEECTTSCEEEEETT--TTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-
T ss_pred CCcceeeECCCCCEEEEcCC--CCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe-
Confidence 45778888999987776544 7899999988 55432 2333345566776 444444455 9999987 543
Q ss_pred eeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEEe---cCceEEEEECCc-EEEEEe
Q psy505 87 EQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYSF---SNTILAVKLNRK-KEEEED 154 (161)
Q Consensus 87 ~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~---~~~V~~v~~~~~-~~vv~~ 154 (161)
. .+...........+++.+++...++...++.|..||.. ++.. .+.. ...+.++.+.++ ++.+..
T Consensus 95 ~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~~~~~~~~i~~d~~g~l~v~~ 163 (300)
T 2qc5_A 95 T-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY-EYDLPNKGSYPAFITLGSDNALWFTE 163 (300)
T ss_dssp E-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECTTSSEEEEE
T ss_pred E-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE-EccCCCCCCCceeEEECCCCCEEEEe
Confidence 2 22221111235678888877666666556789999987 6654 3433 256889999886 455544
No 203
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.11 E-value=9.8e-05 Score=64.05 Aligned_cols=133 Identities=13% Similarity=0.069 Sum_probs=82.6
Q ss_pred CCceeEEeecCCCceEEEEcCCC---CcceEEEEEcCCC--CceeeeeccCccceeee-----eEEEecC----Cc-eEE
Q psy505 13 NPNGICCLCVNSDNCYLAYPGSN---SIGEVQIFDADNL--HAKTMIPAHDSPLAALA-----SLSVGTK----SG-YRL 77 (161)
Q Consensus 13 ~~~~v~~~~~~~d~~~la~~g~~---~dg~v~iWd~~~~--~~~~~l~~H~~~V~~l~-----~lasgs~----dg-iri 77 (161)
++..+..++++|||.+|++.+.. ....|.+||+.++ ++...+..+...+.... .|+..++ ++ +.+
T Consensus 266 ~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~ 345 (741)
T 1yr2_A 266 LPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVR 345 (741)
T ss_dssp CTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEE
T ss_pred CCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEE
Confidence 33347788889999988876641 0238999999887 42566666655444432 4444443 33 888
Q ss_pred EEeCCcC-ceeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecC-CCCeEEEEEe--cCceEEEEECCc
Q psy505 78 FSLNSID-TLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFK-RGSEICNYSF--SNTILAVKLNRK 148 (161)
Q Consensus 78 wd~~~~~-~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~-~~~~i~~l~~--~~~V~~v~~~~~ 148 (161)
||+.++. ....+..++.. .+..+.++.+.+ +++...|+..+||... .++.+..+.+ ...|..+.++|+
T Consensus 346 ~d~~~~~~~~~~l~~~~~~--~l~~~~~~~~~l-v~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d 417 (741)
T 1yr2_A 346 VDLSGSTPRFDTVVPESKD--NLESVGIAGNRL-FASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPG 417 (741)
T ss_dssp EECSSSSCEEEEEECCCSS--EEEEEEEEBTEE-EEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBT
T ss_pred EeCCCCccccEEEecCCCC--eEEEEEEECCEE-EEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCC
Confidence 9987742 33345444432 355667775554 4444456666666543 4666677765 367888999886
No 204
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.05 E-value=9.1e-07 Score=71.08 Aligned_cols=106 Identities=10% Similarity=0.030 Sum_probs=54.3
Q ss_pred CceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee------eEEEecCCc-eEEEEeCCcCceeeEEeecCcce
Q psy505 25 DNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA------SLSVGTKSG-YRLFSLNSIDTLEQIYENSQEDV 97 (161)
Q Consensus 25 d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~------~lasgs~dg-iriwd~~~~~~~~~~~~~~~~~~ 97 (161)
++..+++++. ||.|+.||..+|+.+..++. +++.+.. .+++++.|| ++.||.++|+.+. .++.+....
T Consensus 8 ~~~~v~~gs~--dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w-~~~~~~~~~ 82 (369)
T 2hz6_A 8 PETLLFVSTL--DGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLT-KLPFTIPEL 82 (369)
T ss_dssp CTTEEEEEET--TSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSE-ECSCCHHHH
T ss_pred eCCEEEEEcC--CCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceee-eeeccCccc
Confidence 4445655554 89999999999999988886 4444332 667778899 9999999987542 333221100
Q ss_pred EEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEEe
Q psy505 98 CIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYSF 136 (161)
Q Consensus 98 ~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~ 136 (161)
...+..+..++. ++.++.|+.|..||.++|+.+-.+..
T Consensus 83 ~~~sp~~~~~~~-v~~g~~dg~v~a~D~~tG~~~w~~~~ 120 (369)
T 2hz6_A 83 VQASPCRSSDGI-LYMGKKQDIWYVIDLLTGEKQQTLSS 120 (369)
T ss_dssp HTTCSCC------CCCCEEEEEEEEECCC----------
T ss_pred cccCceEecCCE-EEEEeCCCEEEEEECCCCcEEEEecC
Confidence 000111112333 33344567899999999998766654
No 205
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.04 E-value=6.3e-07 Score=72.02 Aligned_cols=103 Identities=15% Similarity=0.087 Sum_probs=50.2
Q ss_pred CCceEEEEcCCCCcceEEEEEcCCCCceeeeeccC------ccceeee-eEEEecCCc-eEEEEeCCcCceeeEEeecCc
Q psy505 24 SDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHD------SPLAALA-SLSVGTKSG-YRLFSLNSIDTLEQIYENSQE 95 (161)
Q Consensus 24 ~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~------~~V~~l~-~lasgs~dg-iriwd~~~~~~~~~~~~~~~~ 95 (161)
+++..++.++. ||.|+.||..+|+.+..++.+. .++..-. .+++|+.|| +..||.++|+.+. .+..+.
T Consensus 47 ~~g~~~v~~s~--dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w-~~~~~~- 122 (369)
T 2hz6_A 47 VEEPAFLPDPN--DGSLYTLGSKNNEGLTKLPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQ-TLSSAF- 122 (369)
T ss_dssp ---CCEEECTT--TCCEEEC-----CCSEECSCCHHHHHTTCSCC-----CCCCEEEEEEEEECCC--------------
T ss_pred cCCCEEEEeCC--CCEEEEEECCCCceeeeeeccCccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEE-EecCCC-
Confidence 46656665444 9999999999998877765442 2221111 677788888 9999999998653 222222
Q ss_pred ceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEE
Q psy505 96 DVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYS 135 (161)
Q Consensus 96 ~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~ 135 (161)
. ..++|++-.++.++.|+.|+.||.++|+.+-++.
T Consensus 123 ~-----~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 157 (369)
T 2hz6_A 123 A-----DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT 157 (369)
T ss_dssp ---------------EEEEEEEEEEECCCSSSSSCCCEEE
T ss_pred c-----ccccccCCEEEEEecCCEEEEEECCCCCEEEeEe
Confidence 1 1234433334444457799999999998765554
No 206
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.02 E-value=8.1e-05 Score=64.05 Aligned_cols=131 Identities=7% Similarity=-0.035 Sum_probs=81.9
Q ss_pred CCceeEEeecCCCceEEEEcCCCCcc----eEEEEEcCCCCceeeeeccCccceeee-----eEEEecC---Cc-eEEEE
Q psy505 13 NPNGICCLCVNSDNCYLAYPGSNSIG----EVQIFDADNLHAKTMIPAHDSPLAALA-----SLSVGTK---SG-YRLFS 79 (161)
Q Consensus 13 ~~~~v~~~~~~~d~~~la~~g~~~dg----~v~iWd~~~~~~~~~l~~H~~~V~~l~-----~lasgs~---dg-iriwd 79 (161)
++..+.+++++|||.+|++.+. ++ .|.+||..+++ ...+..|...+.... +++++.. ++ +.+||
T Consensus 225 ~~~~~~~~~~SpDG~~l~~~~~--~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~~~g~l~~~s~~~~~~~~l~~~d 301 (695)
T 2bkl_A 225 DPTTFLQSDLSRDGKYLFVYIL--RGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHAWKDRFYVLTDEGAPRQRVFEVD 301 (695)
T ss_dssp CTTCEEEEEECTTSCCEEEEEE--ETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEEETTEEEEEECTTCTTCEEEEEB
T ss_pred CCEEEEEEEECCCCCEEEEEEe--CCCCceEEEEEcCCCCc-eEEeecCCCceEEEEecCCcEEEEECCCCCCCEEEEEe
Confidence 3445778889999999988765 44 67777766554 455555555444333 3444442 45 99999
Q ss_pred eCCcCc--eeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecC-CCCeEEEEEe--cCceEEEEECCc
Q psy505 80 LNSIDT--LEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFK-RGSEICNYSF--SNTILAVKLNRK 148 (161)
Q Consensus 80 ~~~~~~--~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~-~~~~i~~l~~--~~~V~~v~~~~~ 148 (161)
+.+++. ...+..++. ...+..++|+.+. .+++...|+..+||... +++.+..+.+ ...|..+.++|+
T Consensus 302 ~~~~~~~~~~~l~~~~~-~~~l~~~~~~~~~-lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d 373 (695)
T 2bkl_A 302 PAKPARASWKEIVPEDS-SASLLSVSIVGGH-LSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLED 373 (695)
T ss_dssp TTBCSGGGCEEEECCCS-SCEEEEEEEETTE-EEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTT
T ss_pred CCCCCccCCeEEecCCC-CCeEEEEEEECCE-EEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCC
Confidence 987653 234443331 2346677787554 45555567777777554 4666666665 356788888886
No 207
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.01 E-value=0.0014 Score=50.74 Aligned_cols=132 Identities=8% Similarity=-0.032 Sum_probs=86.2
Q ss_pred EeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee-----eEEEecCCc-eEEEEeCCcCceeeEEee
Q psy505 19 CLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA-----SLSVGTKSG-YRLFSLNSIDTLEQIYEN 92 (161)
Q Consensus 19 ~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~-----~lasgs~dg-iriwd~~~~~~~~~~~~~ 92 (161)
.++++.+ .|..+... ++.+.++|..+++.+.++..-...=+.++ ++++- .++ +.++|.++.+....+.-+
T Consensus 70 Gi~~~g~--~lyv~t~~-~~~v~viD~~t~~v~~~i~~g~~~g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg 145 (266)
T 2iwa_A 70 GLTLLNE--KLYQVVWL-KNIGFIYDRRTLSNIKNFTHQMKDGWGLATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVK 145 (266)
T ss_dssp EEEEETT--EEEEEETT-CSEEEEEETTTTEEEEEEECCSSSCCEEEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECE
T ss_pred EEEEeCC--EEEEEEec-CCEEEEEECCCCcEEEEEECCCCCeEEEEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEEC
Confidence 4555433 33333343 89999999999999998863312224455 44433 455 999999887655444333
Q ss_pred cC-cce-EEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEEec--------------CceEEEEECCc--EEEEEe
Q psy505 93 SQ-EDV-CIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYSFS--------------NTILAVKLNRK--KEEEED 154 (161)
Q Consensus 93 ~~-~~~-~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~~--------------~~V~~v~~~~~--~~vv~~ 154 (161)
.. .++ ...++.|. ++...+....++.|.+-|.++++.+..+... ....+++|+|+ ++.|..
T Consensus 146 ~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTg 224 (266)
T 2iwa_A 146 YNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTG 224 (266)
T ss_dssp ETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEE
T ss_pred CCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEEC
Confidence 21 111 24577777 5555566555679999999999999998763 24588999986 666665
Q ss_pred c
Q psy505 155 E 155 (161)
Q Consensus 155 ~ 155 (161)
+
T Consensus 225 k 225 (266)
T 2iwa_A 225 K 225 (266)
T ss_dssp T
T ss_pred C
Confidence 4
No 208
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.00 E-value=9.7e-05 Score=58.16 Aligned_cols=117 Identities=5% Similarity=-0.073 Sum_probs=70.0
Q ss_pred eeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeee-------eccCccceeee------eEEEecC-----Cc-eE
Q psy505 16 GICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMI-------PAHDSPLAALA------SLSVGTK-----SG-YR 76 (161)
Q Consensus 16 ~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l-------~~H~~~V~~l~------~lasgs~-----dg-ir 76 (161)
....++++|+|.++++.....+|.++||.+.+++. ..+ .+|-..+.+++ ++++-+. ++ |.
T Consensus 18 ~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~ 96 (343)
T 2qe8_A 18 APGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLV 96 (343)
T ss_dssp CEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEE
T ss_pred CcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEE
Confidence 45677788899888774321134477777765542 222 23445566666 3333322 34 99
Q ss_pred EEEeCCcCceeeEEeecC----cceEEEEEeecC-CeEEEEecC---CCCeEEEEecCCCCeEEEE
Q psy505 77 LFSLNSIDTLEQIYENSQ----EDVCIVERLFSS-SLVAVVSLS---SPRKLTVCHFKRGSEICNY 134 (161)
Q Consensus 77 iwd~~~~~~~~~~~~~~~----~~~~v~~~~fs~-~~~~~~s~~---~d~~i~iWD~~~~~~i~~l 134 (161)
+||+.+++.+ +.+.... .......+++++ ++.+.++.. .++.|.+||..+++....+
T Consensus 97 ~~d~~tg~~~-~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~ 161 (343)
T 2qe8_A 97 AWDTLNNQLS-RVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVL 161 (343)
T ss_dssp EEETTTTEEE-EEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEEC
T ss_pred EEECCCCeEE-EEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEe
Confidence 9999887644 3333211 112345778886 456666655 5779999999988765544
No 209
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.00 E-value=0.00073 Score=54.88 Aligned_cols=139 Identities=6% Similarity=-0.061 Sum_probs=86.4
Q ss_pred eeEEeecCC-CceEEEEcCCCCcceEEEEEcCCCCceee----eeccCcc--ceeee-------eEEEecCCc-eEEEEe
Q psy505 16 GICCLCVNS-DNCYLAYPGSNSIGEVQIFDADNLHAKTM----IPAHDSP--LAALA-------SLSVGTKSG-YRLFSL 80 (161)
Q Consensus 16 ~v~~~~~~~-d~~~la~~g~~~dg~v~iWd~~~~~~~~~----l~~H~~~--V~~l~-------~lasgs~dg-iriwd~ 80 (161)
....++++| +|.+++ +.. ++.|+.||+.++..... ..++... .+.++ ++++-+.++ |+.||.
T Consensus 220 ~p~~iav~p~~g~lyv-~d~--~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~ 296 (409)
T 3hrp_A 220 KIGAVALDETEEWLYF-VDS--NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITP 296 (409)
T ss_dssp CCCBCEECTTSSEEEE-ECT--TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECT
T ss_pred CcEEEEEeCCCCeEEE-EEC--CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEec
Confidence 445677788 666555 333 78999999988764322 2222222 22555 555566666 999987
Q ss_pred CCcCceeeEEeecC------c-------ceEEEEEeecCCeEEEEecC-CCCeEEEEecCCCCeEEEEEec---------
Q psy505 81 NSIDTLEQIYENSQ------E-------DVCIVERLFSSSLVAVVSLS-SPRKLTVCHFKRGSEICNYSFS--------- 137 (161)
Q Consensus 81 ~~~~~~~~~~~~~~------~-------~~~v~~~~fs~~~~~~~s~~-~d~~i~iWD~~~~~~i~~l~~~--------- 137 (161)
.. . . ..+.++. + -..-..++++|++...++.+ ..+.|+.||..+|+. ..+...
T Consensus 297 ~g-~-~-~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g 372 (409)
T 3hrp_A 297 DG-E-C-EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQVDVASQIDG 372 (409)
T ss_dssp TC-C-E-EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEECTTCBSCCCB
T ss_pred CC-C-E-EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCCCCCCcCCC
Confidence 53 3 2 2333331 0 01145788999887777777 788999999888864 333321
Q ss_pred -------CceEEEEECCc-EEEEEec--cceeeC
Q psy505 138 -------NTILAVKLNRK-KEEEEDE--EEEKKI 161 (161)
Q Consensus 138 -------~~V~~v~~~~~-~~vv~~~--~~~~~~ 161 (161)
....+++++++ .+.|+.. ++|+||
T Consensus 373 ~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i 406 (409)
T 3hrp_A 373 TPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKY 406 (409)
T ss_dssp STTTCCBSSEEEEEECSSSEEEEEESTTCEEEEE
T ss_pred ChhceEeCCceEEEEcCCCCEEEEECCCCeEEEE
Confidence 46889999996 4555543 367664
No 210
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=97.97 E-value=0.0015 Score=48.97 Aligned_cols=138 Identities=9% Similarity=-0.047 Sum_probs=86.2
Q ss_pred ceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCcee-eeeccCccceeee------eEEEecCCc-eEEEEeCCcCce
Q psy505 15 NGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKT-MIPAHDSPLAALA------SLSVGTKSG-YRLFSLNSIDTL 86 (161)
Q Consensus 15 ~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~-~l~~H~~~V~~l~------~lasgs~dg-iriwd~~~~~~~ 86 (161)
..+..++++|+|.+.++... ++.|..+|.. ++... .+......+.+++ ++++...++ |..||. +++..
T Consensus 104 ~~~~~i~~~~~g~l~v~~~~--~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~ 179 (300)
T 2qc5_A 104 SGPYGITEGLNGDIWFTQLN--GDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLE 179 (300)
T ss_dssp CCEEEEEECSTTCEEEEETT--TTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE
T ss_pred CCCccceECCCCCEEEEccC--CCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEE
Confidence 45778888888887776544 6789999987 55432 2333345566666 444444455 999998 55432
Q ss_pred eeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEEe---cCceEEEEECCc-EEEEEe--ccceee
Q psy505 87 EQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYSF---SNTILAVKLNRK-KEEEED--EEEEKK 160 (161)
Q Consensus 87 ~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~---~~~V~~v~~~~~-~~vv~~--~~~~~~ 160 (161)
. +...........+++++++...++....+.|.+||. +++.. .+.. ...+.++.++++ .+.++. .+.|.+
T Consensus 180 -~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~ 255 (300)
T 2qc5_A 180 -E-YPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEIS-EYDIPTPNARPHAITAGKNSEIWFTEWGANQIGR 255 (300)
T ss_dssp -E-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEE
T ss_pred -E-eeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEE-EEECCCCCCCceEEEECCCCCEEEeccCCCeEEE
Confidence 2 221111123567888887765665555668999998 56543 3322 356889999887 565655 355654
No 211
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.97 E-value=0.0025 Score=49.31 Aligned_cols=132 Identities=9% Similarity=0.026 Sum_probs=85.6
Q ss_pred eecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee-----eEEEecCCceEEEEeCCcCceeeEEeecC
Q psy505 20 LCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA-----SLSVGTKSGYRLFSLNSIDTLEQIYENSQ 94 (161)
Q Consensus 20 ~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~-----~lasgs~dgiriwd~~~~~~~~~~~~~~~ 94 (161)
+++..+..+++ ... ++.+.++|..+++.+.+|..... =+.++ ++.|-..+.+.++|.++.+.+..+.-+..
T Consensus 92 it~~g~~ly~l--tw~-~~~v~v~D~~t~~~~~ti~~~~e-G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~ 167 (262)
T 3nol_A 92 ISDWKDKIVGL--TWK-NGLGFVWNIRNLRQVRSFNYDGE-GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAH 167 (262)
T ss_dssp EEEETTEEEEE--ESS-SSEEEEEETTTCCEEEEEECSSC-CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEET
T ss_pred EEEeCCEEEEE--Eee-CCEEEEEECccCcEEEEEECCCC-ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccC
Confidence 44444444444 332 89999999999999999985332 24555 33333333399999988775543322211
Q ss_pred -cc-eEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEEec-------------CceEEEEECCc--EEEEEecc
Q psy505 95 -ED-VCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYSFS-------------NTILAVKLNRK--KEEEEDEE 156 (161)
Q Consensus 95 -~~-~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~~-------------~~V~~v~~~~~--~~vv~~~~ 156 (161)
.+ ....++.|. ++...+....++.|.+-|.++|+.+..+..+ +.-++++|+|+ ++.|..+.
T Consensus 168 g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 168 GEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp TEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred CccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 11 123456676 4555566556779999999999999998763 13467999984 77777665
No 212
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.97 E-value=0.0031 Score=48.76 Aligned_cols=145 Identities=9% Similarity=-0.017 Sum_probs=86.4
Q ss_pred cceEEecCCCCCCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCc-cceeee-----eEEEecCCc-
Q psy505 2 KVLHTIRDTPPNPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDS-PLAALA-----SLSVGTKSG- 74 (161)
Q Consensus 2 ~~~~~~~~~~~~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~-~V~~l~-----~lasgs~dg- 74 (161)
+.+.+++ ..+. .....++++||+...+++|...++.|++.|+.+++.+..+.-... ....++ +..+.-.++
T Consensus 10 ~vv~~~p-~~~~-~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~ 87 (266)
T 2iwa_A 10 EVLNEFP-HDPY-AFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNI 87 (266)
T ss_dssp EEEEEEE-CCTT-CCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSE
T ss_pred eEEEEEE-CCCC-CCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCE
Confidence 4566773 2222 123456678888777776632257899999999998888752221 112333 333444556
Q ss_pred eEEEEeCCcCceeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEEec------CceEEEEECCc
Q psy505 75 YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYSFS------NTILAVKLNRK 148 (161)
Q Consensus 75 iriwd~~~~~~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~~------~~V~~v~~~~~ 148 (161)
+-++|.++.+.+.++--+...+ ..+++....++ +|. .+++|.+.|.++.+.+..+.-. ...+.+.|...
T Consensus 88 v~viD~~t~~v~~~i~~g~~~g---~glt~Dg~~l~-vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg 162 (266)
T 2iwa_A 88 GFIYDRRTLSNIKNFTHQMKDG---WGLATDGKILY-GSD-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYING 162 (266)
T ss_dssp EEEEETTTTEEEEEEECCSSSC---CEEEECSSSEE-EEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETT
T ss_pred EEEEECCCCcEEEEEECCCCCe---EEEEECCCEEE-EEC-CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECC
Confidence 9999999887665443330111 23445555444 444 4679999999999988777521 13455666544
Q ss_pred EEEEE
Q psy505 149 KEEEE 153 (161)
Q Consensus 149 ~~vv~ 153 (161)
++.+.
T Consensus 163 ~lyvn 167 (266)
T 2iwa_A 163 EVWAN 167 (266)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 44444
No 213
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=97.96 E-value=0.00026 Score=60.27 Aligned_cols=127 Identities=13% Similarity=0.127 Sum_probs=81.0
Q ss_pred cceEEecCCCCCCceeEEeecC----CCceEEEEcCCCCcceEEEEEcCCCCceeeeecc----------Cc-cceeee-
Q psy505 2 KVLHTIRDTPPNPNGICCLCVN----SDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAH----------DS-PLAALA- 65 (161)
Q Consensus 2 ~~~~~~~~~~~~~~~v~~~~~~----~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H----------~~-~V~~l~- 65 (161)
+.+.++ ....+ -+.++++ |||+++.++... +++|.|+|..+.+.++++... .. .+..+.
T Consensus 231 ~~v~~i-~~G~~---P~~ia~s~~~~pDGk~l~v~n~~-~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~ 305 (567)
T 1qks_A 231 TTVAEI-KIGSE---ARSIETSKMEGWEDKYAIAGAYW-PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILA 305 (567)
T ss_dssp CEEEEE-ECCSE---EEEEEECCSTTCTTTEEEEEEEE-TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEE
T ss_pred cEeEEE-ecCCC---CceeEEccccCCCCCEEEEEEcc-CCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEE
Confidence 345555 33333 4567778 699998887774 799999999999988887532 12 233333
Q ss_pred ------eEEEecCCc-eEEEEeCCcCceeeEEeecCcceEEEEEeecCCeEEE-EecCCCCeEEEEecCCCCeEEEEE
Q psy505 66 ------SLSVGTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAV-VSLSSPRKLTVCHFKRGSEICNYS 135 (161)
Q Consensus 66 ------~lasgs~dg-iriwd~~~~~~~~~~~~~~~~~~~v~~~~fs~~~~~~-~s~~~d~~i~iWD~~~~~~i~~l~ 135 (161)
++++-.++| |.++|..+.+.+....-... .....+.|+|++.++ ++...+++|.++|.++++.+..+.
T Consensus 306 s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~--~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~ 381 (567)
T 1qks_A 306 SHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAE--RFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIED 381 (567)
T ss_dssp CSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECC--SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred cCCCCEEEEEecCCCeEEEEecCCCccceeeeeecc--ccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEe
Confidence 444455667 88999866443321111111 123467799877544 334456789999999999876654
No 214
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=97.88 E-value=0.0022 Score=49.08 Aligned_cols=131 Identities=6% Similarity=-0.036 Sum_probs=76.2
Q ss_pred EeecCCC-ceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee-----eEEEecCCceEEEEeCCcCceeeEEee
Q psy505 19 CLCVNSD-NCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA-----SLSVGTKSGYRLFSLNSIDTLEQIYEN 92 (161)
Q Consensus 19 ~~~~~~d-~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~-----~lasgs~dgiriwd~~~~~~~~~~~~~ 92 (161)
+..++|+ +..+.+ ... ++.|..||..+++. ..+. +...+.+++ .|..+..++|.+||.++++ +..+...
T Consensus 17 gp~w~~~~~~l~~~-d~~-~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~~~~~l~~~d~~~g~-~~~~~~~ 91 (297)
T 3g4e_A 17 SPVWEEVSNSLLFV-DIP-AKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVATIGTKFCALNWKEQS-AVVLATV 91 (297)
T ss_dssp EEEEETTTTEEEEE-ETT-TTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEEETTEEEEEETTTTE-EEEEEEC
T ss_pred CCeEECCCCEEEEE-ECC-CCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEEECCeEEEEECCCCc-EEEEEec
Confidence 4555664 444444 443 78999999998765 3333 345677777 3333456669999998765 3233322
Q ss_pred cC--cceEEEEEeecCCeEEEEecCC---------CCeEEEEecCC-CCeEEEEEecCceEEEEECCcE--EEEEe
Q psy505 93 SQ--EDVCIVERLFSSSLVAVVSLSS---------PRKLTVCHFKR-GSEICNYSFSNTILAVKLNRKK--EEEED 154 (161)
Q Consensus 93 ~~--~~~~v~~~~fs~~~~~~~s~~~---------d~~i~iWD~~~-~~~i~~l~~~~~V~~v~~~~~~--~vv~~ 154 (161)
.. .......++++|++...++... ...-.||.+.. ++............+++|+|+. +.++.
T Consensus 92 ~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~ 167 (297)
T 3g4e_A 92 DNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYID 167 (297)
T ss_dssp CTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEE
T ss_pred CCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEec
Confidence 11 2245678889998865554311 12345555443 4433323334567889999973 55544
No 215
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=97.86 E-value=0.001 Score=51.92 Aligned_cols=131 Identities=8% Similarity=-0.128 Sum_probs=76.6
Q ss_pred EEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee-----eEEEecCCceEEEEeCCcCceeeEEee
Q psy505 18 CCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA-----SLSVGTKSGYRLFSLNSIDTLEQIYEN 92 (161)
Q Consensus 18 ~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~-----~lasgs~dgiriwd~~~~~~~~~~~~~ 92 (161)
...+++|++..+...+.. ++.|..||..+++.. .+. +...+.+++ .+..++.+|+.+||.++++. ..+...
T Consensus 52 egp~~~~~~~~l~~~d~~-~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~~~gl~~~d~~~g~~-~~~~~~ 127 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNIL-ERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIASDDGLFLRDTATGVL-TLHAEL 127 (326)
T ss_dssp EEEEEETTTTEEEEEEGG-GTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEETTEEEEEETTTCCE-EEEECS
T ss_pred cCCeEeCCCCEEEEEECC-CCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEECCCEEEEECCCCcE-EEEeeC
Confidence 355667764444444442 789999999887542 333 345677776 33334567799999988763 223221
Q ss_pred c--CcceEEEEEeecCCeEEEEecCC------CCeEEEEecCCCCeEEEEEecCceEEEEECCcE--EEEEe
Q psy505 93 S--QEDVCIVERLFSSSLVAVVSLSS------PRKLTVCHFKRGSEICNYSFSNTILAVKLNRKK--EEEED 154 (161)
Q Consensus 93 ~--~~~~~v~~~~fs~~~~~~~s~~~------d~~i~iWD~~~~~~i~~l~~~~~V~~v~~~~~~--~vv~~ 154 (161)
. .....+..++++|++...++... .+.|..+| +++............+++|+|++ +.++.
T Consensus 128 ~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~ 197 (326)
T 2ghs_A 128 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVD 197 (326)
T ss_dssp STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEE
T ss_pred CCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEE
Confidence 1 11245778899998765555321 23455555 45533222233567789999884 55543
No 216
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.84 E-value=0.0036 Score=48.56 Aligned_cols=132 Identities=8% Similarity=-0.002 Sum_probs=86.3
Q ss_pred eecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee----eEEEecCCc-eEEEEeCCcCceeeEEeecC
Q psy505 20 LCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA----SLSVGTKSG-YRLFSLNSIDTLEQIYENSQ 94 (161)
Q Consensus 20 ~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~----~lasgs~dg-iriwd~~~~~~~~~~~~~~~ 94 (161)
+++..+..+++. .. ++.+.++|..+++.+.+|..-. .=++++ .|..+..++ +.++|.++.+.+..+.-+..
T Consensus 101 it~~g~~Ly~lt--w~-~~~v~V~D~~Tl~~~~ti~~~~-eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~ 176 (268)
T 3nok_A 101 LASDGERLYQLT--WT-EGLLFTWSGMPPQRERTTRYSG-EGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLR 176 (268)
T ss_dssp EEECSSCEEEEE--SS-SCEEEEEETTTTEEEEEEECSS-CCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEET
T ss_pred EEEeCCEEEEEE--cc-CCEEEEEECCcCcEEEEEeCCC-ceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCC
Confidence 455545444443 32 8999999999999999998533 235666 333333344 99999988775543322211
Q ss_pred -cce-EEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEEec--------------CceEEEEECCc--EEEEEecc
Q psy505 95 -EDV-CIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYSFS--------------NTILAVKLNRK--KEEEEDEE 156 (161)
Q Consensus 95 -~~~-~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~~--------------~~V~~v~~~~~--~~vv~~~~ 156 (161)
.++ ...++.|. ++...+....++.|.+-|.++|+.+..+.+. +.-++++++|+ ++.|..+.
T Consensus 177 g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~ 255 (268)
T 3nok_A 177 GQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL 255 (268)
T ss_dssp TEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred CcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence 111 34567777 4455566556679999999999999998753 23467999984 66665554
No 217
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=97.83 E-value=0.00044 Score=56.35 Aligned_cols=116 Identities=7% Similarity=-0.023 Sum_probs=75.6
Q ss_pred EeecCCCceEEEEcCCC---CcceEEEEEcCCCCceeeeeccCccceeee------eEEEec----------CCc-eEEE
Q psy505 19 CLCVNSDNCYLAYPGSN---SIGEVQIFDADNLHAKTMIPAHDSPLAALA------SLSVGT----------KSG-YRLF 78 (161)
Q Consensus 19 ~~~~~~d~~~la~~g~~---~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~------~lasgs----------~dg-iriw 78 (161)
...+.||+..+-.+... .++.|.+.|..+++.+.++..-..+ . ++ .+.+++ .++ |.+|
T Consensus 37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsvi 114 (386)
T 3sjl_D 37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVF 114 (386)
T ss_dssp CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred eeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEE
Confidence 45667888666554330 0579999999999999999865566 3 55 332222 345 9999
Q ss_pred EeCCcCceeeEEeecCc----ceEEEEEeecCCeEEE-EecC-CCCeEEEEecCCCCeEEEEEe
Q psy505 79 SLNSIDTLEQIYENSQE----DVCIVERLFSSSLVAV-VSLS-SPRKLTVCHFKRGSEICNYSF 136 (161)
Q Consensus 79 d~~~~~~~~~~~~~~~~----~~~v~~~~fs~~~~~~-~s~~-~d~~i~iWD~~~~~~i~~l~~ 136 (161)
|..+.+...++.-+... ...-..++|+|++..+ ++.. .+++|.++|+++++.+.++.-
T Consensus 115 D~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v 178 (386)
T 3sjl_D 115 DPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV 178 (386)
T ss_dssp CTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred ECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC
Confidence 99998766544322100 0011257799987543 3433 368999999999999888854
No 218
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=97.83 E-value=0.0036 Score=50.21 Aligned_cols=37 Identities=11% Similarity=0.081 Sum_probs=30.6
Q ss_pred CeEEEEecCCCCeEEEEEecCceEEEEECCc-E-EEEEe
Q psy505 118 RKLTVCHFKRGSEICNYSFSNTILAVKLNRK-K-EEEED 154 (161)
Q Consensus 118 ~~i~iWD~~~~~~i~~l~~~~~V~~v~~~~~-~-~vv~~ 154 (161)
+.|.+.|.++++.+.++.......++.|+|| + ++++.
T Consensus 298 ~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~ 336 (373)
T 2mad_H 298 KEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYAL 336 (373)
T ss_pred CeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEE
Confidence 5799999999999999987778999999998 2 44444
No 219
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=97.82 E-value=0.00023 Score=55.95 Aligned_cols=138 Identities=8% Similarity=-0.086 Sum_probs=77.7
Q ss_pred eeEEeecCCC-ceEEEEcCC--CCcceEEEEEcCCCCceeeeeccCc-----------------------------ccee
Q psy505 16 GICCLCVNSD-NCYLAYPGS--NSIGEVQIFDADNLHAKTMIPAHDS-----------------------------PLAA 63 (161)
Q Consensus 16 ~v~~~~~~~d-~~~la~~g~--~~dg~v~iWd~~~~~~~~~l~~H~~-----------------------------~V~~ 63 (161)
....++++|+ +...++-.+ . ++.|.+||+.+++....+.+|.. .+++
T Consensus 121 ~~~~v~vd~~~g~~yvtd~~~~~-~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~g 199 (343)
T 2qe8_A 121 FVNDLAVDLIHNFVYISDPAPDD-KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNG 199 (343)
T ss_dssp CCCEEEEETTTTEEEEEECCSGG-GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEE
T ss_pred ccceEEEecCCCEEEEEcCccCC-CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccce
Confidence 3456777764 444454331 2 68999999998887766665422 1233
Q ss_pred ee------eEEEecCCceEEEEeCCcC----c------eee-EEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecC
Q psy505 64 LA------SLSVGTKSGYRLFSLNSID----T------LEQ-IYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFK 126 (161)
Q Consensus 64 l~------~lasgs~dgiriwd~~~~~----~------~~~-~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~ 126 (161)
++ .|..+..++-+||.+.+.. . ... ...++.+ ....+++++++...++...++.|.+||.+
T Consensus 200 ia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g--~pdgia~d~~G~l~va~~~~~~V~~~d~~ 277 (343)
T 2qe8_A 200 IVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKP--ICDGISIDKDHNIYVGDLAHSAIGVITSA 277 (343)
T ss_dssp EEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECC--SCSCEEECTTCCEEEEEGGGTEEEEEETT
T ss_pred eEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCC--CCceEEECCCCCEEEEccCCCeEEEEECC
Confidence 43 3444444443555543210 0 000 0112211 12357788888777877778899999996
Q ss_pred CCCeEEEEEec--CceEEEEECCcEEEEEecc
Q psy505 127 RGSEICNYSFS--NTILAVKLNRKKEEEEDEE 156 (161)
Q Consensus 127 ~~~~i~~l~~~--~~V~~v~~~~~~~vv~~~~ 156 (161)
+|+.......+ ..+.+++|.+++-+.++.+
T Consensus 278 ~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 278 DRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCN 309 (343)
T ss_dssp TTEEEEEEECGGGSCEEEEEECTTSCEEEEEC
T ss_pred CCCEEEEEECCceecCCeeEECCCCcEEEEeC
Confidence 67643333332 4688999988754444433
No 220
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.80 E-value=0.0049 Score=47.80 Aligned_cols=108 Identities=12% Similarity=0.008 Sum_probs=67.6
Q ss_pred EEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCcc-ceeee-----eEEEecCCc-eEEEEeCCcCceeeEE
Q psy505 18 CCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSP-LAALA-----SLSVGTKSG-YRLFSLNSIDTLEQIY 90 (161)
Q Consensus 18 ~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~-V~~l~-----~lasgs~dg-iriwd~~~~~~~~~~~ 90 (161)
..|.++ ++....+.|. +|.|+..|+.+++.+..+ -.... -.+++ ++...-.++ +.+||.++.+.+.++
T Consensus 58 qGL~~~-~~~Ly~stG~--~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti- 132 (268)
T 3nok_A 58 QGLVFH-QGHFFESTGH--QGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTT- 132 (268)
T ss_dssp EEEEEE-TTEEEEEETT--TTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEE-
T ss_pred ceEEEE-CCEEEEEcCC--CCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEE-
Confidence 355555 3556666665 788999999999988776 22221 12344 333333555 999999988766443
Q ss_pred eecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEE
Q psy505 91 ENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYS 135 (161)
Q Consensus 91 ~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~ 135 (161)
.....+ ..+++....++ +|. .+++|.++|.++.+.+.++.
T Consensus 133 ~~~~eG---wGLt~Dg~~L~-vSd-Gs~~l~~iDp~T~~v~~~I~ 172 (268)
T 3nok_A 133 RYSGEG---WGLCYWNGKLV-RSD-GGTMLTFHEPDGFALVGAVQ 172 (268)
T ss_dssp ECSSCC---CCEEEETTEEE-EEC-SSSEEEEECTTTCCEEEEEE
T ss_pred eCCCce---eEEecCCCEEE-EEC-CCCEEEEEcCCCCeEEEEEE
Confidence 321111 23445554443 443 36799999999998887764
No 221
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=97.79 E-value=0.0025 Score=49.66 Aligned_cols=137 Identities=9% Similarity=-0.029 Sum_probs=80.2
Q ss_pred ceeEEeecCCCceEEEEcCCC----CcceEEEEEcCCCCceeeeeccCccceeee-------eEEEecCCc-eEEEEeC-
Q psy505 15 NGICCLCVNSDNCYLAYPGSN----SIGEVQIFDADNLHAKTMIPAHDSPLAALA-------SLSVGTKSG-YRLFSLN- 81 (161)
Q Consensus 15 ~~v~~~~~~~d~~~la~~g~~----~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~-------~lasgs~dg-iriwd~~- 81 (161)
..+..++++|+|.+.++.... ..+.|..+| +++. ..+..+....++++ ++++.+.++ |.+||..
T Consensus 134 ~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~ 210 (326)
T 2ghs_A 134 NRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKV-TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDA 210 (326)
T ss_dssp EEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEE-EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCT
T ss_pred CCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcE-EEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEccc
Confidence 357788899999877654210 013444455 4543 33333333345554 334555566 9999986
Q ss_pred -Cc-Cce-eeEEe-ecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEEec-CceEEEEEC-Cc--EEEEE
Q psy505 82 -SI-DTL-EQIYE-NSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYSFS-NTILAVKLN-RK--KEEEE 153 (161)
Q Consensus 82 -~~-~~~-~~~~~-~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~~-~~V~~v~~~-~~--~~vv~ 153 (161)
+| ... .+.+. .....-....+++++++...++...++.|.+||. +++.+..+..+ ..+.+++|+ |+ .|.+.
T Consensus 211 ~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt 289 (326)
T 2ghs_A 211 RTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVT 289 (326)
T ss_dssp TTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEE
T ss_pred ccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEE
Confidence 55 311 01221 1111113457788887765555444568999998 68877777754 479999997 75 46555
Q ss_pred ec
Q psy505 154 DE 155 (161)
Q Consensus 154 ~~ 155 (161)
..
T Consensus 290 ~~ 291 (326)
T 2ghs_A 290 SA 291 (326)
T ss_dssp EB
T ss_pred ec
Confidence 43
No 222
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=97.77 E-value=0.0011 Score=53.86 Aligned_cols=135 Identities=12% Similarity=-0.004 Sum_probs=82.6
Q ss_pred eecCCCceEEEEcCCCCcc--eEEEEEcCCCCceeee----eccCccceeee------eEEEecCCc-eEEEEeCCcCce
Q psy505 20 LCVNSDNCYLAYPGSNSIG--EVQIFDADNLHAKTMI----PAHDSPLAALA------SLSVGTKSG-YRLFSLNSIDTL 86 (161)
Q Consensus 20 ~~~~~d~~~la~~g~~~dg--~v~iWd~~~~~~~~~l----~~H~~~V~~l~------~lasgs~dg-iriwd~~~~~~~ 86 (161)
++++|++..|..+.. ++ .|.+||..++.....+ ..+...+++++ .|..+..++ |+.||..++. .
T Consensus 176 ia~~~~g~~l~~~d~--~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~-~ 252 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGW--EGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE-V 252 (409)
T ss_dssp CEECTTSSEEEEEBS--STTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC-E
T ss_pred eeEecCCCcEEEEec--CCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC-E
Confidence 677888877766554 34 7999998876654444 21445566666 333355577 9999998764 2
Q ss_pred eeEEe-----ecCcceEEEEEeecC-CeEEEEecCCCCeEEEEecCCCCeEEEEE-ec---------------CceEEEE
Q psy505 87 EQIYE-----NSQEDVCIVERLFSS-SLVAVVSLSSPRKLTVCHFKRGSEICNYS-FS---------------NTILAVK 144 (161)
Q Consensus 87 ~~~~~-----~~~~~~~v~~~~fs~-~~~~~~s~~~d~~i~iWD~~~~~~i~~l~-~~---------------~~V~~v~ 144 (161)
..+. ++........++|+| ++...++....+.|+.||... + +..+. .. ....+++
T Consensus 253 -~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g-~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia 329 (409)
T 3hrp_A 253 -TLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDG-E-CEWFCGSATQKTVQDGLREEALFAQPNGMT 329 (409)
T ss_dssp -EEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTC-C-EEEEEECTTCCSCBCEEGGGCBCSSEEEEE
T ss_pred -EEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCC-C-EEEEEeCCCCCCcCCCcccccEeCCCeEEE
Confidence 2331 111110011788998 577777777788999999764 3 23332 11 3478899
Q ss_pred ECCcE-EEEEec---cceee
Q psy505 145 LNRKK-EEEEDE---EEEKK 160 (161)
Q Consensus 145 ~~~~~-~vv~~~---~~~~~ 160 (161)
++|++ +.++.. .+|++
T Consensus 330 ~d~dG~lyvad~~~~~~I~~ 349 (409)
T 3hrp_A 330 VDEDGNFYIVDGFKGYCLRK 349 (409)
T ss_dssp ECTTCCEEEEETTTTCEEEE
T ss_pred EeCCCCEEEEeCCCCCEEEE
Confidence 99985 555543 35554
No 223
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=97.75 E-value=0.0011 Score=51.00 Aligned_cols=132 Identities=2% Similarity=-0.212 Sum_probs=81.3
Q ss_pred EEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee------eEEEecCCc-eEEEEeCCcCceeeEE
Q psy505 18 CCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA------SLSVGTKSG-YRLFSLNSIDTLEQIY 90 (161)
Q Consensus 18 ~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~------~lasgs~dg-iriwd~~~~~~~~~~~ 90 (161)
...+++|+|..|..++.. ++.|..||. +++ ...+..+...+++++ ++++...++ |.+||.. |+ +..+.
T Consensus 48 egp~~~~~g~~l~~~d~~-~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~-~~~~~ 122 (305)
T 3dr2_A 48 EGPAWWEAQRTLVWSDLV-GRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQ-AHLLV 122 (305)
T ss_dssp EEEEEEGGGTEEEEEETT-TTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-EEEEE
T ss_pred cCCeEeCCCCEEEEEECC-CCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CC-EEEEE
Confidence 456667888855555553 789999998 454 455666667777777 444444444 9999975 54 32232
Q ss_pred eecCcc--eEEEEEeecCCeEEEEe----cC-------------CCCeEEEEecCCCCeEEEEEecCceEEEEECCc--E
Q psy505 91 ENSQED--VCIVERLFSSSLVAVVS----LS-------------SPRKLTVCHFKRGSEICNYSFSNTILAVKLNRK--K 149 (161)
Q Consensus 91 ~~~~~~--~~v~~~~fs~~~~~~~s----~~-------------~d~~i~iWD~~~~~~i~~l~~~~~V~~v~~~~~--~ 149 (161)
....+. .....++++|++...++ +. ..+.|..||.++++..... ......+++|+|+ .
T Consensus 123 ~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~ 201 (305)
T 3dr2_A 123 GRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQT 201 (305)
T ss_dssp CEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSE
T ss_pred eccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCE
Confidence 211110 12346788888876664 21 1256888898777754433 3356678999998 3
Q ss_pred EEEEec
Q psy505 150 EEEEDE 155 (161)
Q Consensus 150 ~vv~~~ 155 (161)
+.++..
T Consensus 202 lyv~~~ 207 (305)
T 3dr2_A 202 LYVSQT 207 (305)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 666544
No 224
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=97.70 E-value=0.001 Score=51.15 Aligned_cols=138 Identities=14% Similarity=-0.034 Sum_probs=82.9
Q ss_pred eEEeecCCCceEEEEc----CCC-----------CcceEEEEEcCCCCceeeeeccCccceeee------eEEEe-cC--
Q psy505 17 ICCLCVNSDNCYLAYP----GSN-----------SIGEVQIFDADNLHAKTMIPAHDSPLAALA------SLSVG-TK-- 72 (161)
Q Consensus 17 v~~~~~~~d~~~la~~----g~~-----------~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~------~lasg-s~-- 72 (161)
+..++++|+|.+.++- ... ..+.|..+|..+++..... +....+.++ .|..+ +.
T Consensus 133 ~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~ 210 (305)
T 3dr2_A 133 PNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQ 210 (305)
T ss_dssp CCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC-
T ss_pred CCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCc
Confidence 3457778899888751 110 0256777888777654332 333345555 33333 33
Q ss_pred ---Cc-eEEEEeCCcCceee--EEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEEecCceEEEEEC
Q psy505 73 ---SG-YRLFSLNSIDTLEQ--IYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYSFSNTILAVKLN 146 (161)
Q Consensus 73 ---dg-iriwd~~~~~~~~~--~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~~~~V~~v~~~ 146 (161)
++ |.+||+..+. +.. .+.... .-....+++++++...++. .+.|.+||. .++.+..+..+..+.++.|+
T Consensus 211 ~~~~~~i~~~~~~~~~-l~~~~~~~~~~-~~~pdgi~~d~~G~lwv~~--~~gv~~~~~-~g~~~~~~~~~~~~~~~~f~ 285 (305)
T 3dr2_A 211 GHGSVEITAFAWRDGA-LHDRRHFASVP-DGLPDGFCVDRGGWLWSSS--GTGVCVFDS-DGQLLGHIPTPGTASNCTFD 285 (305)
T ss_dssp --CCCEEEEEEEETTE-EEEEEEEECCS-SSCCCSEEECTTSCEEECC--SSEEEEECT-TSCEEEEEECSSCCCEEEEC
T ss_pred CCCCCEEEEEEecCCC-ccCCeEEEECC-CCCCCeEEECCCCCEEEec--CCcEEEECC-CCCEEEEEECCCceeEEEEe
Confidence 25 9999986543 211 111000 0012246677777655654 246999998 58888888776789999997
Q ss_pred Cc--EEEEEeccceeeC
Q psy505 147 RK--KEEEEDEEEEKKI 161 (161)
Q Consensus 147 ~~--~~vv~~~~~~~~~ 161 (161)
|+ .|.+...+.++++
T Consensus 286 ~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 286 QAQQRLFITGGPCLWML 302 (305)
T ss_dssp TTSCEEEEEETTEEEEE
T ss_pred CCCCEEEEEcCCeEEEE
Confidence 75 6888888877653
No 225
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.68 E-value=0.0069 Score=46.80 Aligned_cols=123 Identities=8% Similarity=0.106 Sum_probs=73.4
Q ss_pred cceEEecCCCCCCceeEEeecCCCceEEEEcCCCCcc--eEEEEEcCCCCceeeeeccCccc-eeee-----eEEEecCC
Q psy505 2 KVLHTIRDTPPNPNGICCLCVNSDNCYLAYPGSNSIG--EVQIFDADNLHAKTMIPAHDSPL-AALA-----SLSVGTKS 73 (161)
Q Consensus 2 ~~~~~~~~~~~~~~~v~~~~~~~d~~~la~~g~~~dg--~v~iWd~~~~~~~~~l~~H~~~V-~~l~-----~lasgs~d 73 (161)
+.+++++ ..+.+ =...|.++ |+....++|. +| .|+..|+.+++.+..+.-..... .+++ +....-.+
T Consensus 32 ~vv~~~p-hd~~~-ftqGL~~~-~~~LyestG~--~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~ 106 (262)
T 3nol_A 32 QIVHSYP-HDTKA-FTEGFFYR-NGYFYESTGL--NGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKN 106 (262)
T ss_dssp EEEEEEE-CCTTC-EEEEEEEE-TTEEEEEEEE--TTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSS
T ss_pred EEEEEec-CCCCc-ccceEEEE-CCEEEEECCC--CCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeC
Confidence 3455663 22232 13455566 5667777665 45 89999999999888876433321 2233 33333345
Q ss_pred c-eEEEEeCCcCceeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEE
Q psy505 74 G-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYS 135 (161)
Q Consensus 74 g-iriwd~~~~~~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~ 135 (161)
+ +-+||.++.+.+.++--+ ..+ ..+++....+ .+|. ..++|.++|.++.+.+..+.
T Consensus 107 ~~v~v~D~~t~~~~~ti~~~-~eG---~glt~dg~~L-~~Sd-Gs~~i~~iDp~T~~v~~~I~ 163 (262)
T 3nol_A 107 GLGFVWNIRNLRQVRSFNYD-GEG---WGLTHNDQYL-IMSD-GTPVLRFLDPESLTPVRTIT 163 (262)
T ss_dssp SEEEEEETTTCCEEEEEECS-SCC---CCEEECSSCE-EECC-SSSEEEEECTTTCSEEEEEE
T ss_pred CEEEEEECccCcEEEEEECC-CCc---eEEecCCCEE-EEEC-CCCeEEEEcCCCCeEEEEEE
Confidence 5 999999998766444322 111 1333444433 3443 35689999999988877764
No 226
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.65 E-value=0.011 Score=45.14 Aligned_cols=133 Identities=8% Similarity=0.031 Sum_probs=84.0
Q ss_pred EeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee-----eEEEecCCceEEEEeCCcCceeeEEeec
Q psy505 19 CLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA-----SLSVGTKSGYRLFSLNSIDTLEQIYENS 93 (161)
Q Consensus 19 ~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~-----~lasgs~dgiriwd~~~~~~~~~~~~~~ 93 (161)
.+++..+..+++ ... ++.+.++|..+.+.+.++...... ++++ ++.|-..+.+.++|.++.+.+..+--+.
T Consensus 69 Gi~~~~~~ly~l--tw~-~~~v~v~D~~tl~~~~ti~~~~~G-wglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~ 144 (243)
T 3mbr_X 69 GIVAWRDRLIQL--TWR-NHEGFVYDLATLTPRARFRYPGEG-WALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA 144 (243)
T ss_dssp EEEEETTEEEEE--ESS-SSEEEEEETTTTEEEEEEECSSCC-CEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEE
T ss_pred EEEEeCCEEEEE--Eee-CCEEEEEECCcCcEEEEEeCCCCc-eEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc
Confidence 344443443444 342 899999999999999999854333 5666 4444333339999998876554332221
Q ss_pred C-cc-eEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEEec--------------CceEEEEECCc--EEEEEec
Q psy505 94 Q-ED-VCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYSFS--------------NTILAVKLNRK--KEEEEDE 155 (161)
Q Consensus 94 ~-~~-~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~~--------------~~V~~v~~~~~--~~vv~~~ 155 (161)
. .+ ..+.++.+.... ..+....++.|.+-|.++|+.+..+... +.-++++++|+ ++.|..+
T Consensus 145 ~g~~~~~lNeLe~~~G~-lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 145 GGRPLDNLNELEWVNGE-LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TTEECCCEEEEEEETTE-EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CCcccccceeeEEeCCE-EEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 1 11 124566666444 4454445668999999999999988733 13467999984 7776655
Q ss_pred c
Q psy505 156 E 156 (161)
Q Consensus 156 ~ 156 (161)
.
T Consensus 224 ~ 224 (243)
T 3mbr_X 224 R 224 (243)
T ss_dssp T
T ss_pred C
Confidence 4
No 227
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.62 E-value=0.0005 Score=57.21 Aligned_cols=124 Identities=10% Similarity=0.133 Sum_probs=78.2
Q ss_pred CCceEEEEcCCCCcceEEEEEcCCC----Cceeeee--------cc--Cccceeee--eEEEecCC------c-eEEEEe
Q psy505 24 SDNCYLAYPGSNSIGEVQIFDADNL----HAKTMIP--------AH--DSPLAALA--SLSVGTKS------G-YRLFSL 80 (161)
Q Consensus 24 ~d~~~la~~g~~~dg~v~iWd~~~~----~~~~~l~--------~H--~~~V~~l~--~lasgs~d------g-iriwd~ 80 (161)
+++++|..++.. ++.|.+.|+.+. +..++++ +- ...+.+.. +++++..+ | |-+.|.
T Consensus 93 ~~r~~l~v~~l~-s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLR-SSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTT-TCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCC-CCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEEC
Confidence 788999998986 899999999765 4455552 10 00111221 33333333 4 999999
Q ss_pred CCcCceeeEEeecCcceEEEEEeecCCeEEEEecC-------------------CCCeEEEEecCCCCeEEEEEec---C
Q psy505 81 NSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLS-------------------SPRKLTVCHFKRGSEICNYSFS---N 138 (161)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~-------------------~d~~i~iWD~~~~~~i~~l~~~---~ 138 (161)
++++.+.+.-.+......-..+-|+|+...+++.. ..++|.+||+.+++.+.++... .
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~ 251 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR 251 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence 98875543322211111122456788776666642 2578999999999888888763 3
Q ss_pred ceEEEEE--CCc
Q psy505 139 TILAVKL--NRK 148 (161)
Q Consensus 139 ~V~~v~~--~~~ 148 (161)
..+.++| +|+
T Consensus 252 ~P~~i~f~~~Pd 263 (462)
T 2ece_A 252 MALELRPLHDPT 263 (462)
T ss_dssp EEEEEEECSSTT
T ss_pred ccceeEeeECCC
Confidence 5667777 887
No 228
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=97.59 E-value=0.0037 Score=50.14 Aligned_cols=112 Identities=8% Similarity=-0.008 Sum_probs=69.6
Q ss_pred ecCCCceEEEEcCC-CCcc---eEEEEEcCCCCceeeeeccCccceeee------eEEEec----------CCc-eEEEE
Q psy505 21 CVNSDNCYLAYPGS-NSIG---EVQIFDADNLHAKTMIPAHDSPLAALA------SLSVGT----------KSG-YRLFS 79 (161)
Q Consensus 21 ~~~~d~~~la~~g~-~~dg---~v~iWd~~~~~~~~~l~~H~~~V~~l~------~lasgs----------~dg-iriwd 79 (161)
.+.|++..+-.+.. . .. +|.++|..+++.+.++.....+ .++ ++..+. .++ |.+||
T Consensus 27 ~~~~~~~~~yv~~~~~-~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD 103 (373)
T 2mad_H 27 APGADGRRSYINLPAH-HSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFD 103 (373)
T ss_pred cCCCCCCEEEEeCCcc-cCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEE
Confidence 34467755444332 1 22 8999999999998888765555 554 443332 245 99999
Q ss_pred eCCcCceeeEEee-cCc---ceEEEEEeecCCeEEEEec-C-CCCeEEEEecCCCCeEEE-EEe
Q psy505 80 LNSIDTLEQIYEN-SQE---DVCIVERLFSSSLVAVVSL-S-SPRKLTVCHFKRGSEICN-YSF 136 (161)
Q Consensus 80 ~~~~~~~~~~~~~-~~~---~~~v~~~~fs~~~~~~~s~-~-~d~~i~iWD~~~~~~i~~-l~~ 136 (161)
..+.+...++.-+ ... ...-..++++|++..+... . .+++|.++| ++++.+.+ +..
T Consensus 104 ~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~ 166 (373)
T 2mad_H 104 PVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS 166 (373)
T ss_pred CCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC
Confidence 9887655433222 000 0012367899987655543 2 357899999 99998887 643
No 229
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.42 E-value=0.0023 Score=51.61 Aligned_cols=51 Identities=12% Similarity=-0.035 Sum_probs=38.1
Q ss_pred CcceEEecCCCCCCceeEEeecCCCceEEEEcC---------CCCcceEEEEEcCCCCceeeeecc
Q psy505 1 MKVLHTIRDTPPNPNGICCLCVNSDNCYLAYPG---------SNSIGEVQIFDADNLHAKTMIPAH 57 (161)
Q Consensus 1 ~~~~~~~~~~~~~~~~v~~~~~~~d~~~la~~g---------~~~dg~v~iWd~~~~~~~~~l~~H 57 (161)
+|.+.++ .....| + ++++|||..+..+. .. +++|.+||+.+++.+.++..+
T Consensus 56 ~~v~~~i-~vG~~P-~---i~~spDg~~lyVan~~~~r~~~G~~-~~~VsviD~~T~~vv~~I~v~ 115 (368)
T 1mda_H 56 GVTLGHS-LGAFLS-L---AVAGHSGSDFALASTSFARSAKGKR-TDYVEVFDPVTFLPIADIELP 115 (368)
T ss_dssp TEEEEEE-EECTTC-E---EEECTTSSCEEEEEEEETTTTSSSE-EEEEEEECTTTCCEEEEEEET
T ss_pred CeEEEEE-eCCCCC-c---eEECCCCCEEEEEcccccccccCCC-CCEEEEEECCCCCEEEEEECC
Confidence 4677788 566666 4 66788987776653 32 688999999999999998644
No 230
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.38 E-value=0.027 Score=42.96 Aligned_cols=112 Identities=8% Similarity=-0.020 Sum_probs=69.4
Q ss_pred eEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccc-eeee-----eEEEecCCc-eEEEEeCCcCceeeE
Q psy505 17 ICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPL-AALA-----SLSVGTKSG-YRLFSLNSIDTLEQI 89 (161)
Q Consensus 17 v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V-~~l~-----~lasgs~dg-iriwd~~~~~~~~~~ 89 (161)
.-.|.+++ +....++|......|+..|+.+++.+..+.-...+. .+++ ++...-.++ +.+||.++.+.+.++
T Consensus 23 tqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti 101 (243)
T 3mbr_X 23 TEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARF 101 (243)
T ss_dssp EEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEE
T ss_pred cccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEE
Confidence 44666765 556666665212489999999999888776433321 2233 333344455 999999988766444
Q ss_pred EeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEE
Q psy505 90 YENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYS 135 (161)
Q Consensus 90 ~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~ 135 (161)
.-+ ..+ ..+++....+ .+|.+ +++|.++|.++.+.+.++.
T Consensus 102 ~~~-~~G---wglt~dg~~L-~vSdg-s~~l~~iDp~t~~~~~~I~ 141 (243)
T 3mbr_X 102 RYP-GEG---WALTSDDSHL-YMSDG-TAVIRKLDPDTLQQVGSIK 141 (243)
T ss_dssp ECS-SCC---CEEEECSSCE-EEECS-SSEEEEECTTTCCEEEEEE
T ss_pred eCC-CCc---eEEeeCCCEE-EEECC-CCeEEEEeCCCCeEEEEEE
Confidence 322 222 2334444433 44543 5689999999998877764
No 231
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=97.34 E-value=0.0081 Score=48.87 Aligned_cols=70 Identities=10% Similarity=-0.006 Sum_probs=52.5
Q ss_pred eEEEEeCCcCceeeEEeecCcceEEEEEeecCCe--EEEEecCCCCeEEEEecCCCCeEEEEEecCceEEEEECCc
Q psy505 75 YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSL--VAVVSLSSPRKLTVCHFKRGSEICNYSFSNTILAVKLNRK 148 (161)
Q Consensus 75 iriwd~~~~~~~~~~~~~~~~~~~v~~~~fs~~~--~~~~s~~~d~~i~iWD~~~~~~i~~l~~~~~V~~v~~~~~ 148 (161)
|-+.|+++++.+..+.-++ ....++|++++ .++++...+++|.++|.++++.+.++.....-..+.+++|
T Consensus 313 V~viD~~t~kv~~~i~vg~----~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~l~~s~d 384 (386)
T 3sjl_D 313 VVVLDAKTGERLAKFEMGH----EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD 384 (386)
T ss_dssp EEEEETTTCCEEEEEEEEE----EECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEEECC
T ss_pred EEEEECCCCeEEEEEECCC----CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCCceeEECCc
Confidence 8899999988765554443 35678899886 3455555678999999999999999876665555666665
No 232
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.32 E-value=0.0059 Score=47.94 Aligned_cols=105 Identities=15% Similarity=0.187 Sum_probs=64.1
Q ss_pred CceEEEEcCCCCcceEEEEEcCCCCceeeeeccC---------ccc-eeee----eEEEecCCc-eEEEEeCCcCceeeE
Q psy505 25 DNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHD---------SPL-AALA----SLSVGTKSG-YRLFSLNSIDTLEQI 89 (161)
Q Consensus 25 d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~---------~~V-~~l~----~lasgs~dg-iriwd~~~~~~~~~~ 89 (161)
++..++. .. +|.|..+|..+|+.+..+.... ..+ .... .+..++.++ +..+|.++|+.+-+
T Consensus 53 ~~~v~~~-~~--~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~- 128 (376)
T 3q7m_A 53 DNVVYAA-DR--AGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQ- 128 (376)
T ss_dssp TTEEEEE-CT--TSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEE-
T ss_pred CCEEEEE-cC--CCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEE-
Confidence 4444443 43 7899999999999887776532 222 2222 666778888 99999999975422
Q ss_pred EeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEEec
Q psy505 90 YENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYSFS 137 (161)
Q Consensus 90 ~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~~ 137 (161)
+.... .+ ........+.+ .++ +.++.|..+|.++|+.+-.+...
T Consensus 129 ~~~~~-~~-~~~p~~~~~~v-~v~-~~~g~l~~~d~~tG~~~W~~~~~ 172 (376)
T 3q7m_A 129 TKVAG-EA-LSRPVVSDGLV-LIH-TSNGQLQALNEADGAVKWTVNLD 172 (376)
T ss_dssp EECSS-CC-CSCCEEETTEE-EEE-CTTSEEEEEETTTCCEEEEEECC
T ss_pred EeCCC-ce-EcCCEEECCEE-EEE-cCCCeEEEEECCCCcEEEEEeCC
Confidence 22221 10 00111223433 333 35678999999999988666543
No 233
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.17 E-value=0.013 Score=48.15 Aligned_cols=97 Identities=6% Similarity=-0.026 Sum_probs=65.1
Q ss_pred ceEEEEEcCCCCceeeeeccCccceeee------eEEEec----------CCc-eEEEEeCCcCceeeEEee-cCc---c
Q psy505 38 GEVQIFDADNLHAKTMIPAHDSPLAALA------SLSVGT----------KSG-YRLFSLNSIDTLEQIYEN-SQE---D 96 (161)
Q Consensus 38 g~v~iWd~~~~~~~~~l~~H~~~V~~l~------~lasgs----------~dg-iriwd~~~~~~~~~~~~~-~~~---~ 96 (161)
+.|.+.|+.+++.+.++..-..+ .++ ++..+. .++ |.++|..+++...++.-+ ... .
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g 176 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVG 176 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBS
T ss_pred CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccC
Confidence 79999999999999999865566 566 332222 345 999999998765444322 000 0
Q ss_pred eEEEEEeecCCeEEE-EecC-CCCeEEEEecCCCCeEEEEEe
Q psy505 97 VCIVERLFSSSLVAV-VSLS-SPRKLTVCHFKRGSEICNYSF 136 (161)
Q Consensus 97 ~~v~~~~fs~~~~~~-~s~~-~d~~i~iWD~~~~~~i~~l~~ 136 (161)
..-..+.|+|++..+ ++.. .+++|.+.|+++++.+.++.-
T Consensus 177 ~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v 218 (426)
T 3c75_H 177 TYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV 218 (426)
T ss_dssp CCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred CCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEc
Confidence 001256789987433 3333 367899999999999888764
No 234
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.16 E-value=0.039 Score=43.14 Aligned_cols=126 Identities=14% Similarity=0.144 Sum_probs=71.4
Q ss_pred CceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccc-----ee--ee--eEEEecCCc-eEEEEeCCcCceeeEEeecC
Q psy505 25 DNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPL-----AA--LA--SLSVGTKSG-YRLFSLNSIDTLEQIYENSQ 94 (161)
Q Consensus 25 d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V-----~~--l~--~lasgs~dg-iriwd~~~~~~~~~~~~~~~ 94 (161)
++..++ +.. +|.|..+|..+|+.+..+....... .. +. .+..++.+| +..+|.++|+.+-+......
T Consensus 143 ~~~v~v-~~~--~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~ 219 (376)
T 3q7m_A 143 DGLVLI-HTS--NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQA 219 (376)
T ss_dssp TTEEEE-ECT--TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCTTTEEEEEETTTCCEEEEEECCC-
T ss_pred CCEEEE-EcC--CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCCCEEEEEECCCCcEEEEEecccC
Confidence 444444 343 8999999999999888776543221 11 11 666788888 99999999875432211110
Q ss_pred -cceE------E-EEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEEecCceEEEEECCcEEEEEecc
Q psy505 95 -EDVC------I-VERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYSFSNTILAVKLNRKKEEEEDEE 156 (161)
Q Consensus 95 -~~~~------v-~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~~~~V~~v~~~~~~~vv~~~~ 156 (161)
.... + .......+.+++.+ .++.|..+|.++|+.+-.... +.........+.+.+...+
T Consensus 220 ~~~~~~~~~~~~~~~p~~~~~~v~~~~--~~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~l~~~~~~ 286 (376)
T 3q7m_A 220 TGSTEIDRLSDVDTTPVVVNGVVFALA--YNGNLTALDLRSGQIMWKREL-GSVNDFIVDGNRIYLVDQN 286 (376)
T ss_dssp ----------CCCCCCEEETTEEEEEC--TTSCEEEEETTTCCEEEEECC-CCEEEEEEETTEEEEEETT
T ss_pred CCCcccccccccCCCcEEECCEEEEEe--cCcEEEEEECCCCcEEeeccC-CCCCCceEECCEEEEEcCC
Confidence 0000 0 01112233343333 456899999999997755443 2334455556666666543
No 235
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=97.14 E-value=0.0045 Score=53.31 Aligned_cols=130 Identities=7% Similarity=0.065 Sum_probs=76.7
Q ss_pred CceeEEeecCCCceEEEEcCCC--CcceEEEEEcCCCC-ceeeeeccCcccee-ee-----eEEEecCC---c-eEEEEe
Q psy505 14 PNGICCLCVNSDNCYLAYPGSN--SIGEVQIFDADNLH-AKTMIPAHDSPLAA-LA-----SLSVGTKS---G-YRLFSL 80 (161)
Q Consensus 14 ~~~v~~~~~~~d~~~la~~g~~--~dg~v~iWd~~~~~-~~~~l~~H~~~V~~-l~-----~lasgs~d---g-iriwd~ 80 (161)
+.....++++|||.+|+.+... .+..|.+||+.++. ....+..+.+.... +. +++.+..+ + +..+|+
T Consensus 233 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~ 312 (693)
T 3iuj_A 233 HHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDA 312 (693)
T ss_dssp CCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEET
T ss_pred CeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeC
Confidence 3346678889999988654321 13589999998764 55677777665544 22 44444443 4 778888
Q ss_pred CCcCc--eeeEEeecCcceEEEEEeecCCeEEEEecCCC--CeEEEEecCCCCeEEEEEec--CceEEEEECCc
Q psy505 81 NSIDT--LEQIYENSQEDVCIVERLFSSSLVAVVSLSSP--RKLTVCHFKRGSEICNYSFS--NTILAVKLNRK 148 (161)
Q Consensus 81 ~~~~~--~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d--~~i~iWD~~~~~~i~~l~~~--~~V~~v~~~~~ 148 (161)
.+++. .. .+..|...+ + .+....+.+++... .+ ..|++||+. +.....+.++ ..+..+.++|+
T Consensus 313 ~~~~~~~~~-~l~~~~~~~-~-~~s~~g~~lv~~~~-~~g~~~l~~~d~~-g~~~~~l~~p~~~~~~~~~~~~d 381 (693)
T 3iuj_A 313 ANPGPAHWR-DLIPERQQV-L-TVHSGSGYLFAEYM-VDATARVEQFDYE-GKRVREVALPGLGSVSGFNGKHD 381 (693)
T ss_dssp TSCCGGGCE-EEECCCSSC-E-EEEEETTEEEEEEE-ETTEEEEEEECTT-SCEEEEECCSSSSEEEECCCCTT
T ss_pred CCCCccccE-EEecCCCCE-E-EEEEECCEEEEEEE-ECCeeEEEEEECC-CCeeEEeecCCCceEEeeecCCC
Confidence 77653 22 233444332 2 44444455544432 22 269999987 4455666653 45666666654
No 236
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.12 E-value=0.0057 Score=52.92 Aligned_cols=60 Identities=10% Similarity=0.111 Sum_probs=38.0
Q ss_pred c-eEEEEeCCcCceeeEEeecCcceEEEEEeec-CCeEEEEecCCCCeEEEEecCCCCeEEEEEecC
Q psy505 74 G-YRLFSLNSIDTLEQIYENSQEDVCIVERLFS-SSLVAVVSLSSPRKLTVCHFKRGSEICNYSFSN 138 (161)
Q Consensus 74 g-iriwd~~~~~~~~~~~~~~~~~~~v~~~~fs-~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~~~ 138 (161)
| +..||+.+|+.+-+. .... . .....+. .+++.+++ +.|+.+++||.++|+.+-++....
T Consensus 457 g~l~A~D~~tG~~~W~~-~~~~-~--~~~g~~~~~g~~v~~g-~~dg~l~a~D~~tG~~lw~~~~~~ 518 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSV-EHVS-P--WNGGTLTTAGNVVFQG-TADGRLVAYHAATGEKLWEAPTGT 518 (677)
T ss_dssp EEEEEEETTTTEEEEEE-EESS-S--CCCCEEEETTTEEEEE-CTTSEEEEEETTTCCEEEEEECSS
T ss_pred cEEEEEeCCCCcEEeec-CCCC-C--CcCcceEeCCCEEEEE-CCCCcEEEEECCCCceeeeeeCCC
Confidence 6 999999998754332 2211 1 1111122 23444443 578999999999999998887543
No 237
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.10 E-value=0.032 Score=45.81 Aligned_cols=32 Identities=16% Similarity=0.296 Sum_probs=28.5
Q ss_pred CCeEEEEecCCCCeEEEEEecCceEEEEECCc
Q psy505 117 PRKLTVCHFKRGSEICNYSFSNTILAVKLNRK 148 (161)
Q Consensus 117 d~~i~iWD~~~~~~i~~l~~~~~V~~v~~~~~ 148 (161)
.++|.+.|+++++.+.++.-....+++.|+||
T Consensus 349 s~~VsVID~~T~kvv~~I~vg~~P~gia~spD 380 (426)
T 3c75_H 349 SRFVVVLNAETGERINKIELGHEIDSINVSQD 380 (426)
T ss_dssp EEEEEEEETTTCCEEEEEEEEEEECEEEECCS
T ss_pred CCEEEEEECCCCeEEEEEECCCCcCeEEEccC
Confidence 35799999999999999987778999999997
No 238
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.05 E-value=0.0011 Score=57.42 Aligned_cols=71 Identities=15% Similarity=0.095 Sum_probs=48.5
Q ss_pred cceEEEEEcCCCCceeeeeccCccce-eee----eEEEecCCc-eEEEEeCCcCceeeEEeecCcceEEEEEeecCCeE
Q psy505 37 IGEVQIFDADNLHAKTMIPAHDSPLA-ALA----SLSVGTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLV 109 (161)
Q Consensus 37 dg~v~iWd~~~~~~~~~l~~H~~~V~-~l~----~lasgs~dg-iriwd~~~~~~~~~~~~~~~~~~~v~~~~fs~~~~ 109 (161)
+|.++.||+.+|+.+..++.+..... .++ ++..|+.|| ++.||.++|+.+-++..++. +...-+.|+.++.
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~--~~~~p~ty~~~G~ 530 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASG--VMAAPVTYSVDGE 530 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC--CCSCCEEEEETTE
T ss_pred ceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCC--cccCceEEEECCE
Confidence 48899999999999988876643222 222 788899999 99999999987644433322 1112355665544
No 239
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.02 E-value=0.0085 Score=51.92 Aligned_cols=48 Identities=15% Similarity=0.095 Sum_probs=35.9
Q ss_pred eEEEEEcCCCCceeeeeccCccce-----------ee-------eeEEEecCCc-eEEEEeCCcCce
Q psy505 39 EVQIFDADNLHAKTMIPAHDSPLA-----------AL-------ASLSVGTKSG-YRLFSLNSIDTL 86 (161)
Q Consensus 39 ~v~iWd~~~~~~~~~l~~H~~~V~-----------~l-------~~lasgs~dg-iriwd~~~~~~~ 86 (161)
.|.-||+.+|+.+..++......+ ++ ..++.++.+| +.++|.++|+.+
T Consensus 276 ~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 342 (689)
T 1yiq_A 276 SIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELL 342 (689)
T ss_dssp EEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred eEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEe
Confidence 499999999999988875322111 11 1577889999 999999999865
No 240
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=96.95 E-value=0.025 Score=48.52 Aligned_cols=143 Identities=13% Similarity=0.067 Sum_probs=87.1
Q ss_pred CcceEEecCCCCCCceeEEeec-C-CCceEEEEcC-----------------CCCcceEEEEEcCCCCceeeeeccCccc
Q psy505 1 MKVLHTIRDTPPNPNGICCLCV-N-SDNCYLAYPG-----------------SNSIGEVQIFDADNLHAKTMIPAHDSPL 61 (161)
Q Consensus 1 ~~~~~~~~~~~~~~~~v~~~~~-~-~d~~~la~~g-----------------~~~dg~v~iWd~~~~~~~~~l~~H~~~V 61 (161)
||+...+ +-++..+.-.+++ + |++.++.+++ .. ++.+-+.|..+++.+.++.--.++=
T Consensus 122 ~~~~~ii--~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~-~~~vtvID~~t~~v~~qI~Vgg~pd 198 (595)
T 1fwx_A 122 MKCDAIL--EIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANY-VNVFTAVDADKWEVAWQVLVSGNLD 198 (595)
T ss_dssp TEEEEEE--ECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGE-EEEEEEEETTTTEEEEEEEESSCCC
T ss_pred ceEeeEE--eCCCCCCCcceeeeecCCCcEEEEecccccccCCCCccccccccc-CceEEEEECCCCeEEEEEEeCCCcc
Confidence 4556644 2244445556665 4 7888887763 33 6789999999988877765311221
Q ss_pred -eeee----eEEEec-C--------------------------------------CceEEEEeCC--cCc-eeeEEeecC
Q psy505 62 -AALA----SLSVGT-K--------------------------------------SGYRLFSLNS--IDT-LEQIYENSQ 94 (161)
Q Consensus 62 -~~l~----~lasgs-~--------------------------------------dgiriwd~~~--~~~-~~~~~~~~~ 94 (161)
-.++ ++.+.+ . +++.+.|.++ +.. +..+-.+..
T Consensus 199 ~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~ 278 (595)
T 1fwx_A 199 NCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANN 278 (595)
T ss_dssp CEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESS
T ss_pred ceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCC
Confidence 1121 332222 1 1277778776 433 222323322
Q ss_pred cceEEEEEeecCCeE-EEEecCCCCeEEEEecCCCC------------eEEEEEecCceEEEEECCcEE
Q psy505 95 EDVCIVERLFSSSLV-AVVSLSSPRKLTVCHFKRGS------------EICNYSFSNTILAVKLNRKKE 150 (161)
Q Consensus 95 ~~~~v~~~~fs~~~~-~~~s~~~d~~i~iWD~~~~~------------~i~~l~~~~~V~~v~~~~~~~ 150 (161)
-..+.++||+. +++++..+++|.++|+++.+ .+.++.-....+.++|+|++.
T Consensus 279 ----PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~ 343 (595)
T 1fwx_A 279 ----PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGN 343 (595)
T ss_dssp ----CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSE
T ss_pred ----ceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCe
Confidence 23567999885 55666677899999999653 344555557889999999864
No 241
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=96.90 E-value=0.011 Score=44.87 Aligned_cols=119 Identities=9% Similarity=0.032 Sum_probs=73.6
Q ss_pred CceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee-----eEEEecCCc-eEEEEeCCcCceeeEEeecCcceE
Q psy505 25 DNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA-----SLSVGTKSG-YRLFSLNSIDTLEQIYENSQEDVC 98 (161)
Q Consensus 25 d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~-----~lasgs~dg-iriwd~~~~~~~~~~~~~~~~~~~ 98 (161)
++...+. .. +|.+..+|.. ++....+..+...+.++. .+..|+.++ +..||.. |+... .+..... .
T Consensus 107 ~~~l~v~-t~--~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~-~~~~~~~--~ 178 (330)
T 3hxj_A 107 EDILYVT-SM--DGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKW-RFKTNDA--I 178 (330)
T ss_dssp TTEEEEE-CT--TSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEE-EEECSSC--C
T ss_pred CCEEEEE-ec--CCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeE-EEecCCC--c
Confidence 5544443 33 7889999988 777777766666566555 555677766 9999987 65432 2222221 2
Q ss_pred EEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEEe-cCceEEEEECCc-EEEEEec
Q psy505 99 IVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYSF-SNTILAVKLNRK-KEEEEDE 155 (161)
Q Consensus 99 v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~-~~~V~~v~~~~~-~~vv~~~ 155 (161)
+.++.+.+++...++. +.|..+| .+++.+-.+.. ...+.++.+.++ .+.+...
T Consensus 179 ~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~ 233 (330)
T 3hxj_A 179 TSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSL 233 (330)
T ss_dssp CSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEET
T ss_pred eeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcC
Confidence 3345555555544543 5789999 77776655543 355777777776 5555553
No 242
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=96.88 E-value=0.0063 Score=52.16 Aligned_cols=125 Identities=12% Similarity=0.080 Sum_probs=79.0
Q ss_pred CcceEEecCCCCCCceeEEeecCCCceEEEEcCCCCc-------------------------------------ceEEEE
Q psy505 1 MKVLHTIRDTPPNPNGICCLCVNSDNCYLAYPGSNSI-------------------------------------GEVQIF 43 (161)
Q Consensus 1 ~~~~~~~~~~~~~~~~v~~~~~~~d~~~la~~g~~~d-------------------------------------g~v~iW 43 (161)
|+.+.++ ....||.++. .+|||.++.+++.. + +.|.+-
T Consensus 185 ~~v~~qI-~Vgg~pd~~~---~spdGk~~~vt~~~-se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VI 259 (595)
T 1fwx_A 185 WEVAWQV-LVSGNLDNCD---ADYEGKWAFSTSYN-SEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVV 259 (595)
T ss_dssp TEEEEEE-EESSCCCCEE---ECSSSSEEEEEESC-TTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEE
T ss_pred CeEEEEE-EeCCCccceE---ECCCCCEEEEEecC-cccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEE
Confidence 5677787 4545887764 47788888776642 2 247778
Q ss_pred EcCC--CCc-eeeeeccCccceeee-------eEEEecCCc-eEEEEeCCcC------------ceeeEEeecCcceEEE
Q psy505 44 DADN--LHA-KTMIPAHDSPLAALA-------SLSVGTKSG-YRLFSLNSID------------TLEQIYENSQEDVCIV 100 (161)
Q Consensus 44 d~~~--~~~-~~~l~~H~~~V~~l~-------~lasgs~dg-iriwd~~~~~------------~~~~~~~~~~~~~~v~ 100 (161)
|.++ ++. +..+..-.++ .++. .++++-.+. +-++|+++.+ ...+..-|. .-.
T Consensus 260 D~~~~~~~~~~~~Ipvg~~P-hGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~----gP~ 334 (595)
T 1fwx_A 260 DGRKEASSLFTRYIPIANNP-HGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGL----GPL 334 (595)
T ss_dssp ECSGGGCCSSEEEEEEESSC-CCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCS----CEE
T ss_pred eCcccCCceeEEEEecCCCc-eEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCC----Ccc
Confidence 8877 444 4556543332 2333 444444444 9999997542 111121121 235
Q ss_pred EEeecCCeEEEEecCCCCeEEEEecCC----------CCeEEEEE
Q psy505 101 ERLFSSSLVAVVSLSSPRKLTVCHFKR----------GSEICNYS 135 (161)
Q Consensus 101 ~~~fs~~~~~~~s~~~d~~i~iWD~~~----------~~~i~~l~ 135 (161)
.++|+|++.+.++..-|++|.+||..+ .+.+..+.
T Consensus 335 h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kid 379 (595)
T 1fwx_A 335 HTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLD 379 (595)
T ss_dssp EEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEE
T ss_pred eEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEee
Confidence 678999998888887889999999987 56677765
No 243
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=96.80 E-value=0.017 Score=43.93 Aligned_cols=131 Identities=9% Similarity=-0.033 Sum_probs=76.6
Q ss_pred EEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee-----eEEEecCCceEEEEeCCcCceeeEEee
Q psy505 18 CCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA-----SLSVGTKSGYRLFSLNSIDTLEQIYEN 92 (161)
Q Consensus 18 ~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~-----~lasgs~dgiriwd~~~~~~~~~~~~~ 92 (161)
.++..+++|...+. .. ++.+..+|.. ++.+..+..+...+.++. .+..|+ .++..|| .+|+.+.+. ..
T Consensus 140 ~~~~~~~~g~l~vg-t~--~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t-~~l~~~d-~~g~~~~~~-~~ 212 (330)
T 3hxj_A 140 ATPIVSEDGTIYVG-SN--DNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS-DKVYAIN-PDGTEKWNF-YA 212 (330)
T ss_dssp SCCEECTTSCEEEE-CT--TSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES-SSEEEEC-TTSCEEEEE-CC
T ss_pred eeeEEcCCCEEEEE-cC--CCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe-CEEEEEC-CCCcEEEEE-cc
Confidence 34445667776664 33 6899999998 887777776666666665 444455 5599999 676643222 11
Q ss_pred cCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEEecC-ceEEEEEC-CcEEEEEecc-cee
Q psy505 93 SQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYSFSN-TILAVKLN-RKKEEEEDEE-EEK 159 (161)
Q Consensus 93 ~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~~~-~V~~v~~~-~~~~vv~~~~-~~~ 159 (161)
. ...+.++...+++...++. .++.|..+|. +++.+..+.... .+.++.+. ...+.+...+ .++
T Consensus 213 ~--~~~~~~~~~~~~g~l~v~t-~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~ 278 (330)
T 3hxj_A 213 G--YWTVTRPAISEDGTIYVTS-LDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLY 278 (330)
T ss_dssp S--SCCCSCCEECTTSCEEEEE-TTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEEEECTTCEEE
T ss_pred C--CcceeceEECCCCeEEEEc-CCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEEEecCCCCEE
Confidence 1 1224456677774444433 3467888874 676665555332 23344455 3456555554 444
No 244
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=96.71 E-value=0.019 Score=50.12 Aligned_cols=138 Identities=8% Similarity=0.047 Sum_probs=74.9
Q ss_pred eeEEeecC-CCceEEEEcCCCCcc----eEEEEEcCCC-Ccee-eeec-cCccceeee--eEEEecCC-----c-eEEEE
Q psy505 16 GICCLCVN-SDNCYLAYPGSNSIG----EVQIFDADNL-HAKT-MIPA-HDSPLAALA--SLSVGTKS-----G-YRLFS 79 (161)
Q Consensus 16 ~v~~~~~~-~d~~~la~~g~~~dg----~v~iWd~~~~-~~~~-~l~~-H~~~V~~l~--~lasgs~d-----g-iriwd 79 (161)
.+.+++++ |||++||++... +| +|+++|+.++ +.+. .+.. -.++.++-. .|+..+.| . |.+++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~-~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~ 253 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDM-SGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHV 253 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEES-SSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeC-CCCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEE
Confidence 56678889 999999986542 33 5999999998 6322 2221 122233222 33333332 2 66677
Q ss_pred eCCcCce-eeEEeecCcceEEEEEeecCCeEEEE--ec-CCCCeEEEEecCCCC--e-EEEEE--ecCceEEEEEC-CcE
Q psy505 80 LNSIDTL-EQIYENSQEDVCIVERLFSSSLVAVV--SL-SSPRKLTVCHFKRGS--E-ICNYS--FSNTILAVKLN-RKK 149 (161)
Q Consensus 80 ~~~~~~~-~~~~~~~~~~~~v~~~~fs~~~~~~~--s~-~~d~~i~iWD~~~~~--~-i~~l~--~~~~V~~v~~~-~~~ 149 (161)
+.++... ..+++..... ......+||++..++ +. .....|.++|+.++. . +..+. ..+..+++.|+ .+.
T Consensus 254 lgt~~~~~~lv~~~~~~~-~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~ 332 (751)
T 2xe4_A 254 MGKLQSEDVCLYEEHNPL-FSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSH 332 (751)
T ss_dssp TTSCGGGCEEEEECCCTT-CEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTE
T ss_pred CCCCchhcEEEEecCCCc-eEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCE
Confidence 7665321 1344432222 345778999875443 32 234569999998762 2 13332 23455666643 345
Q ss_pred EEEEec
Q psy505 150 EEEEDE 155 (161)
Q Consensus 150 ~vv~~~ 155 (161)
+++..+
T Consensus 333 l~~~t~ 338 (751)
T 2xe4_A 333 LVILTN 338 (751)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 555443
No 245
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=96.53 E-value=0.0043 Score=53.69 Aligned_cols=69 Identities=14% Similarity=0.120 Sum_probs=46.9
Q ss_pred cceEEEEEcCCCCceeeeeccCccceee--e----eEEEecCCc-eEEEEeCCcCceeeEEeecCcceEEEEEeecCCe
Q psy505 37 IGEVQIFDADNLHAKTMIPAHDSPLAAL--A----SLSVGTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSL 108 (161)
Q Consensus 37 dg~v~iWd~~~~~~~~~l~~H~~~V~~l--~----~lasgs~dg-iriwd~~~~~~~~~~~~~~~~~~~v~~~~fs~~~ 108 (161)
.|.|..||+.+++.+..++.. .++.+. . ++..|+.|| +++||.++|+.+.++..++. +...-+.|+.++
T Consensus 456 ~g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~--~~~~p~~y~~~G 531 (677)
T 1kb0_A 456 FGRLLAWDPVAQKAAWSVEHV-SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTG--VVAAPSTYMVDG 531 (677)
T ss_dssp EEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC--CCSCCEEEEETT
T ss_pred ccEEEEEeCCCCcEEeecCCC-CCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCC--cccCCEEEEeCC
Confidence 388999999999998888643 333332 2 677788999 99999999997755443432 112234565554
No 246
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=96.43 E-value=0.11 Score=39.79 Aligned_cols=139 Identities=6% Similarity=-0.108 Sum_probs=73.8
Q ss_pred EEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeecc--------------------Cccceeee------eEEEe-
Q psy505 18 CCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAH--------------------DSPLAALA------SLSVG- 70 (161)
Q Consensus 18 ~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H--------------------~~~V~~l~------~lasg- 70 (161)
..++++++|.++.+... ++.|..||..+++.. .+... .....+++ .|..+
T Consensus 22 ~~i~~d~~g~~l~v~~~--~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d 98 (322)
T 2fp8_A 22 NSFTFDSTNKGFYTSVQ--DGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98 (322)
T ss_dssp CCEECCTTCSSEEEECT--TSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred eEEEEcCCCCEEEEEcC--CCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence 34556788874444333 788999998865432 22210 01234443 23333
Q ss_pred cCCceEEEEeCCcCceeeEEeecCc--ceEEEEEeecC-CeEEEEecC-----------------CCCeEEEEecCCCCe
Q psy505 71 TKSGYRLFSLNSIDTLEQIYENSQE--DVCIVERLFSS-SLVAVVSLS-----------------SPRKLTVCHFKRGSE 130 (161)
Q Consensus 71 s~dgiriwd~~~~~~~~~~~~~~~~--~~~v~~~~fs~-~~~~~~s~~-----------------~d~~i~iWD~~~~~~ 130 (161)
...++..+|..++. +..+.....+ ......+++.+ ++...++.. .++.|..||..+++.
T Consensus 99 ~~~~i~~~d~~~g~-~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 177 (322)
T 2fp8_A 99 CYYHLSVVGSEGGH-ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET 177 (322)
T ss_dssp TTTEEEEECTTCEE-CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred CCCCEEEEeCCCCE-EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence 33448888876553 2122111110 01245678888 775555432 135789999887764
Q ss_pred EEEEEecCceEEEEECCc--EEEEEec--cceee
Q psy505 131 ICNYSFSNTILAVKLNRK--KEEEEDE--EEEKK 160 (161)
Q Consensus 131 i~~l~~~~~V~~v~~~~~--~~vv~~~--~~~~~ 160 (161)
......-.....++++|+ .+.|+.. ++|++
T Consensus 178 ~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~ 211 (322)
T 2fp8_A 178 TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVK 211 (322)
T ss_dssp EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEE
T ss_pred EEeccCCccCcceEECCCCCEEEEEeCCCCeEEE
Confidence 322222244567899997 3555532 35543
No 247
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=96.15 E-value=0.11 Score=44.16 Aligned_cols=66 Identities=12% Similarity=0.059 Sum_probs=40.7
Q ss_pred Cc-eEEEEeCCcCceeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEEecCceEE
Q psy505 73 SG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYSFSNTILA 142 (161)
Q Consensus 73 dg-iriwd~~~~~~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~~~~V~~ 142 (161)
+| +.-||+.+|+.+-+...+ . ...--.+.- .++++++ ++.|+.++.||.++|+.+-++..++.+.+
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~-~-~~~~g~~~t-agglvf~-g~~dg~l~A~D~~tG~~lW~~~~~~g~~a 531 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEH-L-PLWAGVLAT-AGNLVFT-GTGDGYFKAFDAKSGKELWKFQTGSGIVS 531 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEES-S-CCCSCCEEE-TTTEEEE-ECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred cceEEEEECCCCCEEEEecCC-C-CCcccceEe-CCCEEEE-ECCCCcEEEEECCCCCEEEEecCCCCccc
Confidence 57 999999999754322221 1 100001112 2445555 34689999999999999988876555443
No 248
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=96.12 E-value=0.18 Score=43.35 Aligned_cols=48 Identities=13% Similarity=0.156 Sum_probs=35.7
Q ss_pred eEEEEEcCCCCceeeeec--cC-------ccce--eee-------eEEEecCCc-eEEEEeCCcCce
Q psy505 39 EVQIFDADNLHAKTMIPA--HD-------SPLA--ALA-------SLSVGTKSG-YRLFSLNSIDTL 86 (161)
Q Consensus 39 ~v~iWd~~~~~~~~~l~~--H~-------~~V~--~l~-------~lasgs~dg-iriwd~~~~~~~ 86 (161)
.|.-+|+.+|+.+..++. |. .+.. .+. .++.++.+| +.++|.++|+.+
T Consensus 271 ~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 337 (668)
T 1kv9_A 271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI 337 (668)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred eEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEe
Confidence 499999999999988875 32 1111 111 478889999 999999999865
No 249
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=96.07 E-value=0.23 Score=41.31 Aligned_cols=109 Identities=10% Similarity=0.200 Sum_probs=58.9
Q ss_pred eecCCCceEEEEcCCC---CcceEEEEEcCCCCceeeeeccCcc--ce-ee--e----eEEEec----------------
Q psy505 20 LCVNSDNCYLAYPGSN---SIGEVQIFDADNLHAKTMIPAHDSP--LA-AL--A----SLSVGT---------------- 71 (161)
Q Consensus 20 ~~~~~d~~~la~~g~~---~dg~v~iWd~~~~~~~~~l~~H~~~--V~-~l--~----~lasgs---------------- 71 (161)
+...|||.++.+.|+. ..|.|-+.|..+++.+.++..-.++ +. ++ + .+.+..
T Consensus 143 ~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~ 222 (462)
T 2ece_A 143 VHCGPDAIYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHL 222 (462)
T ss_dssp EEECSSCEEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTH
T ss_pred eeECCCeEEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhh
Confidence 3456888444333320 0278999999999999888632222 11 22 1 344443
Q ss_pred ----CCceEEEEeCCcCceeeEEeecCc-ceEEEEEeecCCeE-EEEecC-----CCCeEEEEecCCC
Q psy505 72 ----KSGYRLFSLNSIDTLEQIYENSQE-DVCIVERLFSSSLV-AVVSLS-----SPRKLTVCHFKRG 128 (161)
Q Consensus 72 ----~dgiriwd~~~~~~~~~~~~~~~~-~~~v~~~~fs~~~~-~~~s~~-----~d~~i~iWD~~~~ 128 (161)
.|.|.+||+.+++....+--+..+ ...-+.++|+|++. +.+.+- .+++|.+|....|
T Consensus 223 ~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g 290 (462)
T 2ece_A 223 KDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDG 290 (462)
T ss_dssp HHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETT
T ss_pred hhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCC
Confidence 223999999887544333222111 11122345698763 333333 4567877765544
No 250
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=95.47 E-value=0.54 Score=40.79 Aligned_cols=134 Identities=13% Similarity=0.028 Sum_probs=80.5
Q ss_pred ceeEEeecCCCce-EEEEcCCCCcceEEEEEcCCCCceeeee----ccCccceeee-----eEEEecCCceEEEEeCCcC
Q psy505 15 NGICCLCVNSDNC-YLAYPGSNSIGEVQIFDADNLHAKTMIP----AHDSPLAALA-----SLSVGTKSGYRLFSLNSID 84 (161)
Q Consensus 15 ~~v~~~~~~~d~~-~la~~g~~~dg~v~iWd~~~~~~~~~l~----~H~~~V~~l~-----~lasgs~dgiriwd~~~~~ 84 (161)
..|.++..+++|. +.+.+. ++-+..+|..+++...... -+...|.++. .|-.|+.+|+.+||..+++
T Consensus 406 ~~v~~i~~d~~g~~lWigt~---~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~ 482 (795)
T 4a2l_A 406 NNIKAVYVDEKKSLVYIGTH---AGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTLSALVRFNPEQRS 482 (795)
T ss_dssp SCEEEEEEETTTTEEEEEET---TTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEESSCEEEEETTTTE
T ss_pred ccEEEEEEcCCCCEEEEEeC---cCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEecCceeEEeCCCCe
Confidence 3588888888886 554322 4669999998876543221 2345677776 3334455789999987753
Q ss_pred ceeeEEee----cCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEE-------e-cCceEEEEECCc-EEE
Q psy505 85 TLEQIYEN----SQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYS-------F-SNTILAVKLNRK-KEE 151 (161)
Q Consensus 85 ~~~~~~~~----~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~-------~-~~~V~~v~~~~~-~~v 151 (161)
+...... ......+.++...+++..-++.. +.|..||.++++. .+. . ...|.++...++ .+-
T Consensus 483 -~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lW 557 (795)
T 4a2l_A 483 -FTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIW 557 (795)
T ss_dssp -EEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEE
T ss_pred -EEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEE
Confidence 3222111 00112466777877665444432 4699999987765 332 1 246888888765 455
Q ss_pred EEecc
Q psy505 152 EEDEE 156 (161)
Q Consensus 152 v~~~~ 156 (161)
+.+.+
T Consensus 558 igT~~ 562 (795)
T 4a2l_A 558 VGTRE 562 (795)
T ss_dssp EEESS
T ss_pred EEeCC
Confidence 55544
No 251
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=95.39 E-value=0.039 Score=44.37 Aligned_cols=71 Identities=6% Similarity=-0.057 Sum_probs=50.8
Q ss_pred CceEEEEeCCcCceeeEEeecCcceEEEEEeecCCeE-EEEecC-CCCeEEEEecCCCCeEEEEEecCceEEEEECC
Q psy505 73 SGYRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLV-AVVSLS-SPRKLTVCHFKRGSEICNYSFSNTILAVKLNR 147 (161)
Q Consensus 73 dgiriwd~~~~~~~~~~~~~~~~~~~v~~~~fs~~~~-~~~s~~-~d~~i~iWD~~~~~~i~~l~~~~~V~~v~~~~ 147 (161)
+++.++|+.+.+.+..+.-+. ....++|+|++. .+++.. .+++|.++|+++++.+.++.-....+++.+.+
T Consensus 294 ~~~~ViD~~t~~vv~~i~vg~----~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P~~i~~~~ 366 (368)
T 1mda_H 294 ENTSSVTASVGQTSGPISNGH----DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLSVQN 366 (368)
T ss_dssp EEEEEEESSSCCEEECCEEEE----EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCEEECCC
T ss_pred CCEEEEECCCCeEEEEEECCC----CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCCCEEEeec
Confidence 356699999987665443332 356788999874 455554 57899999999999998887556666666654
No 252
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=95.24 E-value=0.22 Score=42.07 Aligned_cols=64 Identities=16% Similarity=0.126 Sum_probs=38.8
Q ss_pred CCc-eEEEEeCCcCceeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEEecCc
Q psy505 72 KSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYSFSNT 139 (161)
Q Consensus 72 ~dg-iriwd~~~~~~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~~~~ 139 (161)
.+| +..||..+|+.+-+...+ . ......+. ..++..+++ +.|+.|+.||.++|+.+-++...+.
T Consensus 442 ~~g~l~a~D~~tG~~~W~~~~~-~-~~~~~~~~-t~gg~v~~g-~~dg~l~a~D~~tG~~lw~~~~~~~ 506 (571)
T 2ad6_A 442 EMGQIRAFDLTTGKAKWTKWEK-F-AAWGGTLY-TKGGLVWYA-TLDGYLKALDNKDGKELWNFKMPSG 506 (571)
T ss_dssp CCEEEEEECTTTCCEEEEEEES-S-CCCSBCEE-ETTTEEEEE-CTTSEEEEEETTTCCEEEEEECSSC
T ss_pred CCCeEEEEECCCCCEEEEecCC-C-CccceeEE-ECCCEEEEE-cCCCeEEEEECCCCCEEEEEeCCCC
Confidence 357 999999998754332211 1 10000111 224444453 4678999999999999988875443
No 253
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=95.23 E-value=0.93 Score=36.34 Aligned_cols=141 Identities=9% Similarity=0.103 Sum_probs=81.1
Q ss_pred CCCceeEEeecCC-Cce-EEEEcCCCCcceEEEEEcC-------CCCceeeeeccCccceeee-----eEEEecCCc-eE
Q psy505 12 PNPNGICCLCVNS-DNC-YLAYPGSNSIGEVQIFDAD-------NLHAKTMIPAHDSPLAALA-----SLSVGTKSG-YR 76 (161)
Q Consensus 12 ~~~~~v~~~~~~~-d~~-~la~~g~~~dg~v~iWd~~-------~~~~~~~l~~H~~~V~~l~-----~lasgs~dg-ir 76 (161)
..+.|+|... +| .+. ++...+. +|.+..|++. +.+.+.+|.--..+=.|+. .|..+-++. |.
T Consensus 128 ~~pyGlcly~-~~~~g~~yafV~~k--~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw 204 (355)
T 3amr_A 128 NEVYGFTLYH-SQKTGKYYAMVTGK--EGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEEDEAIW 204 (355)
T ss_dssp SSCCCEEEEE-CTTTCCEEEEEECS--SSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTEEE
T ss_pred CCeeEEEEEe-cCCCCcEEEEEECC--CCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEecccceEE
Confidence 4556665543 44 454 4555454 8999999983 3356777776544444444 777788876 76
Q ss_pred EEEeC-----CcCceeeEE-eecC-cceEEEEEeecC--CeEEEEecCCCCeEEEEecC-CCCeEEEEEe---c------
Q psy505 77 LFSLN-----SIDTLEQIY-ENSQ-EDVCIVERLFSS--SLVAVVSLSSPRKLTVCHFK-RGSEICNYSF---S------ 137 (161)
Q Consensus 77 iwd~~-----~~~~~~~~~-~~~~-~~~~v~~~~fs~--~~~~~~s~~~d~~i~iWD~~-~~~~i~~l~~---~------ 137 (161)
.+|.+ ++..+ ... .++- ..+.=+.+...+ .+..++|+-.+++..|||.+ +.+.+..+.- +
T Consensus 205 ~~da~p~~~~~~~~v-~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~Ig~~~~idgv~ 283 (355)
T 3amr_A 205 KFSAEPDGGSNGTVI-DRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFRITDGPETDGTS 283 (355)
T ss_dssp EEECSTTSCSCCEEE-EEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEEECCCSSSCCCC
T ss_pred EEeCCcCCCCCceEE-EEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEEecCCCCceeee
Confidence 66754 12222 111 1211 122222233244 35677877667899999997 7788888751 1
Q ss_pred --C--ceEEEEEC---CcEEEEEecc
Q psy505 138 --N--TILAVKLN---RKKEEEEDEE 156 (161)
Q Consensus 138 --~--~V~~v~~~---~~~~vv~~~~ 156 (161)
+ .|.++.+. |.++.|+-++
T Consensus 284 eTDG~~v~~~~lG~~fP~Gl~V~qDg 309 (355)
T 3amr_A 284 DTDGIDVLGFGLGPEYPFGIFVAQDG 309 (355)
T ss_dssp SCCCEEEECSCCSTTCTTCEEEEEES
T ss_pred ccCcceEEccccCCCCCCcEEEEecC
Confidence 1 24555554 4577777655
No 254
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=95.06 E-value=0.71 Score=34.10 Aligned_cols=135 Identities=6% Similarity=-0.056 Sum_probs=74.0
Q ss_pred eeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee-------eEEEecCCc-eEEEEeCCcCcee
Q psy505 16 GICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA-------SLSVGTKSG-YRLFSLNSIDTLE 87 (161)
Q Consensus 16 ~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~-------~lasgs~dg-iriwd~~~~~~~~ 87 (161)
....++++|++..|..+... .+.|..+|+.++.....+...-....+++ ++.+-...+ |.+++..... ..
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~-~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~ 114 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDIS-EPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RR 114 (267)
T ss_dssp EEEEEEEETTTTEEEEEETT-TTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CE
T ss_pred cEEEEEEecCCCEEEEEECC-CCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-EE
Confidence 34577888854444333442 78999999987654433432223345554 333444445 8888885432 22
Q ss_pred eEEeecCcceEEEEEeecC-CeEEEEecCC--CCeEEEEecCCCCeEEEEEe--cCceEEEEECCc--EEEEEec
Q psy505 88 QIYENSQEDVCIVERLFSS-SLVAVVSLSS--PRKLTVCHFKRGSEICNYSF--SNTILAVKLNRK--KEEEEDE 155 (161)
Q Consensus 88 ~~~~~~~~~~~v~~~~fs~-~~~~~~s~~~--d~~i~iWD~~~~~~i~~l~~--~~~V~~v~~~~~--~~vv~~~ 155 (161)
.+...... .-..++++| ++...++... .+.|..++... +....+.. -....+++++|+ ++.++..
T Consensus 115 ~~~~~~~~--~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~ 186 (267)
T 1npe_A 115 VLFDTGLV--NPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQDNLGLPNGLTFDAFSSQLCWVDA 186 (267)
T ss_dssp EEECSSCS--SEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEECTTCSCEEEEEEETTTTEEEEEET
T ss_pred EEEECCCC--CccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEECCCCCCcEEEEcCCCCEEEEEEC
Confidence 22221111 135678887 4554444422 35788888753 33333321 245778899874 5666554
No 255
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=94.97 E-value=0.9 Score=39.35 Aligned_cols=133 Identities=13% Similarity=0.099 Sum_probs=81.7
Q ss_pred eeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeec--------cCccceeee-----e-EEEecCCc-eEEEEe
Q psy505 16 GICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPA--------HDSPLAALA-----S-LSVGTKSG-YRLFSL 80 (161)
Q Consensus 16 ~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~--------H~~~V~~l~-----~-lasgs~dg-iriwd~ 80 (161)
.|.++..+++|.+.+.+. +|-+..||..+++..+.... ....|.++. . |-.|+.++ +..||.
T Consensus 358 ~V~~i~~d~~g~lWiGt~---~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~ 434 (795)
T 4a2l_A 358 VVSCIVEDKDKNLWIGTN---DGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHR 434 (795)
T ss_dssp SEEEEEECTTSCEEEEES---SSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEET
T ss_pred eeEEEEECCCCCEEEEEC---CCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeC
Confidence 488998888887766432 56789999887765433211 235677776 4 88888755 999999
Q ss_pred CCcCceeeEEeec--CcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEEe--------cCceEEEEECCc-E
Q psy505 81 NSIDTLEQIYENS--QEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYSF--------SNTILAVKLNRK-K 149 (161)
Q Consensus 81 ~~~~~~~~~~~~~--~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~--------~~~V~~v~~~~~-~ 149 (161)
.+++ +..+.... .....+.++...+++...++.. +.|.+||.++++.. .+.. ...|.++...++ .
T Consensus 435 ~~~~-~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~d~~g~ 510 (795)
T 4a2l_A 435 NSGQ-VENFNQRNSQLVNENVYAILPDGEGNLWLGTL--SALVRFNPEQRSFT-TIEKEKDGTPVVSKQITTLFRDSHKR 510 (795)
T ss_dssp TTCC-EEEECTTTSCCSCSCEEEEEECSSSCEEEEES--SCEEEEETTTTEEE-ECCBCTTCCBCCCCCEEEEEECTTCC
T ss_pred CCCc-EEEeecCCCCcCCCeeEEEEECCCCCEEEEec--CceeEEeCCCCeEE-EccccccccccCCceEEEEEECCCCC
Confidence 8765 32222100 0112466777776655444432 46999999887643 2221 246888877665 3
Q ss_pred EEEEec
Q psy505 150 EEEEDE 155 (161)
Q Consensus 150 ~vv~~~ 155 (161)
+-+.+.
T Consensus 511 lWigt~ 516 (795)
T 4a2l_A 511 LWIGGE 516 (795)
T ss_dssp EEEEES
T ss_pred EEEEeC
Confidence 444443
No 256
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=94.87 E-value=0.81 Score=33.78 Aligned_cols=135 Identities=4% Similarity=-0.096 Sum_probs=70.5
Q ss_pred eeEEeecCCCc-eEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee-------eEEEecC--Cc-eEEEEeCCcC
Q psy505 16 GICCLCVNSDN-CYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA-------SLSVGTK--SG-YRLFSLNSID 84 (161)
Q Consensus 16 ~v~~~~~~~d~-~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~-------~lasgs~--dg-iriwd~~~~~ 84 (161)
....++++|++ ...++-.. .+.|.++|+........+...-..-+.++ ++.+... .+ |..++... .
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~--~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~ 156 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQ--LDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-T 156 (267)
T ss_dssp CEEEEEEETTTTEEEEEETT--TTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-C
T ss_pred CccEEEEEecCCeEEEEECC--CCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-C
Confidence 45567777754 34444332 68899999875433222222112334444 2333322 34 77777643 3
Q ss_pred ceeeEEeecCcceEEEEEeecCC-eEEEEecCCCCeEEEEecCCCCeEEEEEecCceEEEEECCcEEEEEec
Q psy505 85 TLEQIYENSQEDVCIVERLFSSS-LVAVVSLSSPRKLTVCHFKRGSEICNYSFSNTILAVKLNRKKEEEEDE 155 (161)
Q Consensus 85 ~~~~~~~~~~~~~~v~~~~fs~~-~~~~~s~~~d~~i~iWD~~~~~~i~~l~~~~~V~~v~~~~~~~vv~~~ 155 (161)
....+...... .-..++++++ ....++....+.|.++|...+.....+.......++++..+.+.++..
T Consensus 157 ~~~~~~~~~~~--~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d~~~lyva~~ 226 (267)
T 1npe_A 157 NRRILAQDNLG--LPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSYGKNLYYTDW 226 (267)
T ss_dssp CCEEEECTTCS--CEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEETTEEEEEET
T ss_pred CcEEEEECCCC--CCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEeCCEEEEEEC
Confidence 22222211111 2356788874 444555556679999999754432222222334566666667777653
No 257
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=94.69 E-value=0.09 Score=44.47 Aligned_cols=52 Identities=15% Similarity=0.032 Sum_probs=38.8
Q ss_pred cceEEEEEcCCCCceeeeeccCccceee--e----eEEEecCCc-eEEEEeCCcCceeeE
Q psy505 37 IGEVQIFDADNLHAKTMIPAHDSPLAAL--A----SLSVGTKSG-YRLFSLNSIDTLEQI 89 (161)
Q Consensus 37 dg~v~iWd~~~~~~~~~l~~H~~~V~~l--~----~lasgs~dg-iriwd~~~~~~~~~~ 89 (161)
+|.|..||+.+++.+..++... ++.+. . .+..++.|| ++.||.++|+.+.++
T Consensus 443 ~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~ 501 (571)
T 2ad6_A 443 MGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNF 501 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCeEEEEECCCCCEEEEecCCC-CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEE
Confidence 6899999999999988876432 22221 1 566688999 999999999876444
No 258
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=94.62 E-value=0.41 Score=41.13 Aligned_cols=107 Identities=11% Similarity=0.027 Sum_probs=64.7
Q ss_pred CceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccc-----------eeee----eEEEecCCc-eEEEEeCCcCceee
Q psy505 25 DNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPL-----------AALA----SLSVGTKSG-YRLFSLNSIDTLEQ 88 (161)
Q Consensus 25 d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V-----------~~l~----~lasgs~dg-iriwd~~~~~~~~~ 88 (161)
++...+. +. ++.|.-+|..+|+.+..++...... .+++ .+..++.|+ +.-+|.++|+.+-+
T Consensus 66 ~g~vyv~-~~--~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~ 142 (668)
T 1kv9_A 66 DGVIYTS-MS--WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWS 142 (668)
T ss_dssp TTEEEEE-EG--GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEE-CC--CCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEeee
Confidence 4544444 33 7899999999999988886443211 1222 677788888 99999999986533
Q ss_pred EEeecCc-ceEEE-EEeecCCeEEEEecC-----CCCeEEEEecCCCCeEEEEE
Q psy505 89 IYENSQE-DVCIV-ERLFSSSLVAVVSLS-----SPRKLTVCHFKRGSEICNYS 135 (161)
Q Consensus 89 ~~~~~~~-~~~v~-~~~fs~~~~~~~s~~-----~d~~i~iWD~~~~~~i~~l~ 135 (161)
...+... ...+. ..... ++..+++.+ .++.|..+|.++|+.+=++.
T Consensus 143 ~~~~~~~~~~~~~~~P~v~-~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 143 QQTTDPAKPYSITGAPRVV-KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp EECSCTTSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred eccCCCCCcceecCCCEEE-CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence 2221100 00000 00011 344455432 25789999999999886664
No 259
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=94.22 E-value=1.7 Score=34.77 Aligned_cols=125 Identities=9% Similarity=0.163 Sum_probs=73.6
Q ss_pred CceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee----e--------EEEec--C--Cc-eEEEEe--CCcCc
Q psy505 25 DNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA----S--------LSVGT--K--SG-YRLFSL--NSIDT 85 (161)
Q Consensus 25 d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~----~--------lasgs--~--dg-iriwd~--~~~~~ 85 (161)
....++...- .+-+.++|+ +|+.++.+.+ +.++.|. + +|.++ . ++ +++|++ .++ .
T Consensus 39 ~~s~ii~t~k--~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-~ 112 (355)
T 3amr_A 39 QNSKLITTNK--KSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-T 112 (355)
T ss_dssp GGCEEEEEET--TTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-C
T ss_pred CccEEEEEcC--CCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-c
Confidence 3344443333 678999999 7899888874 4455544 2 33333 3 45 999977 343 2
Q ss_pred eeeEEe-----ecC-cceEEEEEeecC-C--eEEEEecCCCCeEEEEec-------CCCCeEEEEEecCceEEEEECCc-
Q psy505 86 LEQIYE-----NSQ-EDVCIVERLFSS-S--LVAVVSLSSPRKLTVCHF-------KRGSEICNYSFSNTILAVKLNRK- 148 (161)
Q Consensus 86 ~~~~~~-----~~~-~~~~v~~~~fs~-~--~~~~~s~~~d~~i~iWD~-------~~~~~i~~l~~~~~V~~v~~~~~- 148 (161)
+..+-. +.. ...+=.++.-+| . ..++++. .++.+..|++ .+++.+.++...+++-++...+.
T Consensus 113 l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~-k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~ 191 (355)
T 3amr_A 113 LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTG-KEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEY 191 (355)
T ss_dssp EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEEC-SSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTT
T ss_pred eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEEC-CCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCC
Confidence 432211 010 111112332255 2 3567766 4578988888 33466777777889999999873
Q ss_pred -EEEEEecc
Q psy505 149 -KEEEEDEE 156 (161)
Q Consensus 149 -~~vv~~~~ 156 (161)
.|.+..++
T Consensus 192 g~Lyv~eEd 200 (355)
T 3amr_A 192 GRLYIAEED 200 (355)
T ss_dssp TEEEEEETT
T ss_pred CeEEEeccc
Confidence 66666654
No 260
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=93.85 E-value=0.49 Score=40.31 Aligned_cols=109 Identities=11% Similarity=0.014 Sum_probs=57.1
Q ss_pred EeecCC-CceEEEEcCCCCc---------ceEEEEEcCCCCc--eeeeec-cCccceeee------eEEEecCCc--eEE
Q psy505 19 CLCVNS-DNCYLAYPGSNSI---------GEVQIFDADNLHA--KTMIPA-HDSPLAALA------SLSVGTKSG--YRL 77 (161)
Q Consensus 19 ~~~~~~-d~~~la~~g~~~d---------g~v~iWd~~~~~~--~~~l~~-H~~~V~~l~------~lasgs~dg--iri 77 (161)
+.++.| +|.+++.+|...+ ..+.+||+.+++. +..+.. +.....+++ +++.|+.++ +.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 334455 7888888764211 1689999998863 223322 222222222 677777544 999
Q ss_pred EEeCCcCceeeEEeecCcceEEEEEeecC-CeEEEEecCCC-----CeEEEEecCCCC
Q psy505 78 FSLNSIDTLEQIYENSQEDVCIVERLFSS-SLVAVVSLSSP-----RKLTVCHFKRGS 129 (161)
Q Consensus 78 wd~~~~~~~~~~~~~~~~~~~v~~~~fs~-~~~~~~s~~~d-----~~i~iWD~~~~~ 129 (161)
||..+.+ -.+.-....... -..++.-+ +.+++++|..+ +.+.+||.++++
T Consensus 270 yd~~t~~-W~~~~~~~~~R~-~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 270 YDSSSDS-WIPGPDMQVARG-YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp EEGGGTE-EEECCCCSSCCS-SCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred ecCcCCc-eeECCCCCcccc-ccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 9987643 111111111000 01222333 33445554222 579999998875
No 261
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=93.56 E-value=0.14 Score=43.39 Aligned_cols=52 Identities=27% Similarity=0.310 Sum_probs=39.5
Q ss_pred cceEEEEEcCCCCceeeeeccCcccee--ee----eEEEecCCc-eEEEEeCCcCceeeE
Q psy505 37 IGEVQIFDADNLHAKTMIPAHDSPLAA--LA----SLSVGTKSG-YRLFSLNSIDTLEQI 89 (161)
Q Consensus 37 dg~v~iWd~~~~~~~~~l~~H~~~V~~--l~----~lasgs~dg-iriwd~~~~~~~~~~ 89 (161)
+|.|.-||+.+|+.+.....+. ++.+ +. ++..|+.|| ++.||.++|+.+-++
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~ 523 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKF 523 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred cceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEe
Confidence 6899999999999888776443 2221 22 667799999 999999999866443
No 262
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=93.50 E-value=2.1 Score=36.92 Aligned_cols=134 Identities=10% Similarity=0.030 Sum_probs=77.9
Q ss_pred eeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeee---eccCccceeee-----eEEEecCC-ceEEEEeCCcCce
Q psy505 16 GICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMI---PAHDSPLAALA-----SLSVGTKS-GYRLFSLNSIDTL 86 (161)
Q Consensus 16 ~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l---~~H~~~V~~l~-----~lasgs~d-giriwd~~~~~~~ 86 (161)
.|.++..+++|.+.+.+. ++-+..||..+++..... ......|.++. .|-.|+.+ |+..+|.++++ +
T Consensus 364 ~v~~i~~d~~g~lWigt~---~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~-~ 439 (781)
T 3v9f_A 364 VVSSVCDDGQGKLWIGTD---GGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKK-F 439 (781)
T ss_dssp CEEEEEECTTSCEEEEEB---SSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCE-E
T ss_pred ceEEEEEcCCCCEEEEeC---CCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCc-E
Confidence 488888888887666432 355888898765432211 12345677776 44446664 49899987754 3
Q ss_pred eeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEEe------cCceEEEEECCc-EEEEEec
Q psy505 87 EQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYSF------SNTILAVKLNRK-KEEEEDE 155 (161)
Q Consensus 87 ~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~------~~~V~~v~~~~~-~~vv~~~ 155 (161)
............+.++...+++...++.. +.|..||.++++....... ...|.++...++ .+-+.+.
T Consensus 440 ~~~~~~~~~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~ 513 (781)
T 3v9f_A 440 QIIELEKNELLDVRVFYEDKNKKIWIGTH--AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTF 513 (781)
T ss_dssp EECCSTTTCCCCEEEEEECTTSEEEEEET--TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEES
T ss_pred EEeccCCCCCCeEEEEEECCCCCEEEEEC--CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEc
Confidence 22211001122466777777665555443 4799999988765322211 246888877665 4444443
No 263
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=92.38 E-value=2.8 Score=31.77 Aligned_cols=137 Identities=9% Similarity=-0.048 Sum_probs=76.5
Q ss_pred eEEeecCC-CceEEEEcCC---------------CCcceEEEEEcCCCCceeeeeccCccceeee-------eEEEecCC
Q psy505 17 ICCLCVNS-DNCYLAYPGS---------------NSIGEVQIFDADNLHAKTMIPAHDSPLAALA-------SLSVGTKS 73 (161)
Q Consensus 17 v~~~~~~~-d~~~la~~g~---------------~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~-------~lasgs~d 73 (161)
...++++| +|...++... ..+|.|..+|..+++....... -..-+.++ ++++-+.+
T Consensus 128 p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~ 206 (322)
T 2fp8_A 128 LYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLS 206 (322)
T ss_dssp EEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGG
T ss_pred cceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCC
Confidence 45677888 8876665321 0147788899877654322221 11223333 33333444
Q ss_pred c-eEEEEeCCcC--ceeeEEeecCcceEEEEEeecCCeEEEEecCC----------CCeEEEEecCCCCeEEEEEec---
Q psy505 74 G-YRLFSLNSID--TLEQIYENSQEDVCIVERLFSSSLVAVVSLSS----------PRKLTVCHFKRGSEICNYSFS--- 137 (161)
Q Consensus 74 g-iriwd~~~~~--~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~----------d~~i~iWD~~~~~~i~~l~~~--- 137 (161)
+ |..|++.... .. +.+.... . -..+++.+++...++... .+.|..+|.. |+.+..+..+
T Consensus 207 ~~I~~~~~~~~~~~~~-~~~~~~~-g--P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~ 281 (322)
T 2fp8_A 207 HQIVKYWLEGPKKGTA-EVLVKIP-N--PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPF 281 (322)
T ss_dssp TEEEEEESSSTTTTCE-EEEEECS-S--EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTT
T ss_pred CeEEEEECCCCcCCcc-ceEEeCC-C--CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCC
Confidence 5 9999986421 11 2222111 1 345678887654454322 3568888874 8877777643
Q ss_pred --CceEEEEECCcEEEEEe--cccee
Q psy505 138 --NTILAVKLNRKKEEEED--EEEEK 159 (161)
Q Consensus 138 --~~V~~v~~~~~~~vv~~--~~~~~ 159 (161)
..+.++.+..+.|.+.. .++|.
T Consensus 282 ~~~~~~~~~~~~g~L~v~~~~~~~i~ 307 (322)
T 2fp8_A 282 AGEHFEQIQEHDGLLYIGTLFHGSVG 307 (322)
T ss_dssp TTSCCCEEEEETTEEEEECSSCSEEE
T ss_pred ccccceEEEEeCCEEEEeecCCCceE
Confidence 35777777767777763 44444
No 264
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=92.03 E-value=4.1 Score=32.87 Aligned_cols=135 Identities=5% Similarity=-0.035 Sum_probs=69.5
Q ss_pred EeecCC--CceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee-------eEEEecCCc----eEEEEeCCcCc
Q psy505 19 CLCVNS--DNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA-------SLSVGTKSG----YRLFSLNSIDT 85 (161)
Q Consensus 19 ~~~~~~--d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~-------~lasgs~dg----iriwd~~~~~~ 85 (161)
.++++| ++.+.++ .. .+.|+.+|+.+++.. .+.........++ ++++...++ .-+|-...+..
T Consensus 141 ~lavdp~~~g~Lyv~-d~--~~~I~~id~~~~~v~-~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~ 216 (430)
T 3tc9_A 141 WLSFDPKNHNHLYLV-GE--QHPTRLIDFEKEYVS-TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF 216 (430)
T ss_dssp EEEEETTEEEEEEEE-EB--TEEEEEEETTTTEEE-EEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred EEEECCCCCCeEEEE-eC--CCcEEEEECCCCEEE-EEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence 445565 2443343 22 278999999876543 3332333345555 333333221 22233333332
Q ss_pred ee-eEEeecCcceEEEEEeecC-CeEEEEecCCCCeEEEEecCCCCeEEEEEec--CceEEEEECCcE--EEEEe--ccc
Q psy505 86 LE-QIYENSQEDVCIVERLFSS-SLVAVVSLSSPRKLTVCHFKRGSEICNYSFS--NTILAVKLNRKK--EEEED--EEE 157 (161)
Q Consensus 86 ~~-~~~~~~~~~~~v~~~~fs~-~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~~--~~V~~v~~~~~~--~vv~~--~~~ 157 (161)
.. ..+..... ...++++| ++...++....+.|..+|...+......... ..-..++|+|++ +.++. .++
T Consensus 217 ~~~~~l~~~~~---p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~ 293 (430)
T 3tc9_A 217 KVITELTKGQN---CNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHY 293 (430)
T ss_dssp CSEEEEEECSS---CCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTE
T ss_pred eeeeeeccCCC---ceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCE
Confidence 10 11111111 23456788 6766666656678999999866542222322 357789999973 66663 345
Q ss_pred eee
Q psy505 158 EKK 160 (161)
Q Consensus 158 ~~~ 160 (161)
|++
T Consensus 294 I~~ 296 (430)
T 3tc9_A 294 ILR 296 (430)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 265
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=91.60 E-value=2.5 Score=34.92 Aligned_cols=63 Identities=8% Similarity=0.042 Sum_probs=43.6
Q ss_pred eEEeecCCCceEEEEcCCCCcceEEEEEcCCCCc------------eeeeec------cCccceeee---------eEEE
Q psy505 17 ICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHA------------KTMIPA------HDSPLAALA---------SLSV 69 (161)
Q Consensus 17 v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~------------~~~l~~------H~~~V~~l~---------~las 69 (161)
+.-+..||+|.+||..| +.+|.|-.+..+.. ...++- ...+|..+- +|++
T Consensus 68 i~qlvlSpsG~lLAl~g---~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVV 144 (452)
T 3pbp_A 68 TFHVISSTSGDLLCLFN---DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVV 144 (452)
T ss_dssp TCEEEECTTSSEEEEEC---SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEE
T ss_pred eeEEEECCCCCEEEEec---CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEE
Confidence 55677899999999987 57899988884321 112321 234566555 6777
Q ss_pred ecCCc-eEEEEeCC
Q psy505 70 GTKSG-YRLFSLNS 82 (161)
Q Consensus 70 gs~dg-iriwd~~~ 82 (161)
=..|+ ||+||+..
T Consensus 145 LtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 145 LKEDDTITMFDILN 158 (452)
T ss_dssp EETTSCEEEEETTC
T ss_pred EecCCEEEEEEccc
Confidence 77787 99999975
No 266
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=91.46 E-value=2.4 Score=36.09 Aligned_cols=63 Identities=10% Similarity=-0.034 Sum_probs=37.9
Q ss_pred CCc-eEEEEeCCcCceeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEEecC
Q psy505 72 KSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYSFSN 138 (161)
Q Consensus 72 ~dg-iriwd~~~~~~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~~~ 138 (161)
.+| +.-||+.+|+.+-+...+. +..--.+.- ..+++++ ++.|+.++.||.++|+.+-++....
T Consensus 451 ~~G~l~A~D~~tG~~~W~~~~~~--~~~~g~~~t-agg~vf~-gt~dg~l~A~D~~tG~~lW~~~l~~ 514 (599)
T 1w6s_A 451 GLGQIKAYNAITGDYKWEKMERF--AVWGGTMAT-AGDLVFY-GTLDGYLKARDSDTGDLLWKFKIPS 514 (599)
T ss_dssp CCEEEEEECTTTCCEEEEEEESS--CCCSBCEEE-TTTEEEE-ECTTSEEEEEETTTCCEEEEEECSS
T ss_pred CcCeEEEEECCCCCEEeEecCCC--CccCcceEe-cCCEEEE-ECCCCeEEEEECCCCCEEEEeeCCC
Confidence 347 9999999987543222111 100001122 2344444 3468899999999999998876543
No 267
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=90.88 E-value=4.7 Score=31.40 Aligned_cols=134 Identities=5% Similarity=-0.054 Sum_probs=70.5
Q ss_pred eeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee-------eEEEecCCc-eEEEEeCCcCcee
Q psy505 16 GICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA-------SLSVGTKSG-YRLFSLNSIDTLE 87 (161)
Q Consensus 16 ~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~-------~lasgs~dg-iriwd~~~~~~~~ 87 (161)
...++++++.+..|-.+... .+.|+.+++.++.....+........+++ ++.+-+..+ |.+.++.... ..
T Consensus 74 ~~~~l~~d~~~~~ly~~D~~-~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-~~ 151 (349)
T 3v64_C 74 NAIALDFHHRRELVFWSDVT-LDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-RK 151 (349)
T ss_dssp CEEEEEEETTTTEEEEEETT-TTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CE
T ss_pred ceEEEEEeccccEEEEEecc-CCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc-eE
Confidence 34677777643333333332 68899999887654443332223344555 333444444 8888885432 22
Q ss_pred eEEeecCcceEEEEEeecC-CeEEEEecCCC-CeEEEEecCCCCeEEEEEe--cCceEEEEECC--cEEEEEe
Q psy505 88 QIYENSQEDVCIVERLFSS-SLVAVVSLSSP-RKLTVCHFKRGSEICNYSF--SNTILAVKLNR--KKEEEED 154 (161)
Q Consensus 88 ~~~~~~~~~~~v~~~~fs~-~~~~~~s~~~d-~~i~iWD~~~~~~i~~l~~--~~~V~~v~~~~--~~~vv~~ 154 (161)
.+...... .-..++++| ++...++.... +.|...|..... ...+.. -....+++++| .+|.++.
T Consensus 152 ~l~~~~l~--~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~~~~PnGla~d~~~~~lY~aD 221 (349)
T 3v64_C 152 VLLWQSLE--KPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVD 221 (349)
T ss_dssp EEECTTCS--CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEESCCSSCSCEEEEEEETTTTEEEEEE
T ss_pred EEEeCCCC--CcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-cEEEEECCCCCcceEEEeCCCCEEEEEE
Confidence 23222111 124667776 45545554444 678888875332 222211 23467788875 3666654
No 268
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=90.68 E-value=5.6 Score=31.90 Aligned_cols=126 Identities=15% Similarity=0.299 Sum_probs=75.4
Q ss_pred eeEEeecCCCceEEEEcCCC-----CcceEEEEEcCCCCceeeeeccCccceeee-----------eEEEecCCc--eEE
Q psy505 16 GICCLCVNSDNCYLAYPGSN-----SIGEVQIFDADNLHAKTMIPAHDSPLAALA-----------SLSVGTKSG--YRL 77 (161)
Q Consensus 16 ~v~~~~~~~d~~~la~~g~~-----~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~-----------~lasgs~dg--iri 77 (161)
.+.....++|.++++..|.. -.|.+.||..+. +.-+.++||...-..+. +||.=+..| +.|
T Consensus 153 QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhI 231 (365)
T 2xzh_A 153 QIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHI 231 (365)
T ss_dssp EEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEE
T ss_pred eEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc-cccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEE
Confidence 45566668888888776631 158899999874 55578889876554332 455444444 888
Q ss_pred EEeCCc---C-cee----eEEeec--CcceEEEEEeecC--CeEEEEecCCCCeEEEEecCCCCeEEEEEe-cCceEEEE
Q psy505 78 FSLNSI---D-TLE----QIYENS--QEDVCIVERLFSS--SLVAVVSLSSPRKLTVCHFKRGSEICNYSF-SNTILAVK 144 (161)
Q Consensus 78 wd~~~~---~-~~~----~~~~~~--~~~~~v~~~~fs~--~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~-~~~V~~v~ 144 (161)
-++.+. . ++. .++-.. .++..+ +|..|+ +.+++++- -+-|+++|+++|.|+..-.. .++|...+
T Consensus 232 iEi~~~~~~~~~f~kk~vdi~fppea~~DFPV-amqvs~kygviyviTK--~G~ihlyDleTgt~i~~nrIS~d~iF~ta 308 (365)
T 2xzh_A 232 IEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV-AMQISEKHDVVFLITK--YGYIHLYDLETGTCIYMNRISGETIFVTA 308 (365)
T ss_dssp EECSSCCTTCCCCCCEEEEECCCTTCTTCCEE-EEEEETTTTEEEEEET--TSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred EEcCCCCCCCCCcccccceeeCCccccCCceE-EEEecccCCEEEEEeC--CcEEEEEEcccCcEEEEeccCCCceEEec
Confidence 887432 1 110 111111 123332 333443 56677774 45899999999999876654 45555444
Q ss_pred E
Q psy505 145 L 145 (161)
Q Consensus 145 ~ 145 (161)
-
T Consensus 309 ~ 309 (365)
T 2xzh_A 309 P 309 (365)
T ss_dssp E
T ss_pred c
Confidence 4
No 269
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=90.46 E-value=8.1 Score=33.42 Aligned_cols=107 Identities=11% Similarity=0.133 Sum_probs=58.0
Q ss_pred eEEeecCCCceEEEEcCCC-CcceEEEEEcCCCC-ce--eee-eccCccceeee------eEEEecCC--c-eEEEE--e
Q psy505 17 ICCLCVNSDNCYLAYPGSN-SIGEVQIFDADNLH-AK--TMI-PAHDSPLAALA------SLSVGTKS--G-YRLFS--L 80 (161)
Q Consensus 17 v~~~~~~~d~~~la~~g~~-~dg~v~iWd~~~~~-~~--~~l-~~H~~~V~~l~------~lasgs~d--g-iriwd--~ 80 (161)
...+.++|||.+|+..... ....|.++|+.++. .. ..+ ....++..++. ++.....+ + .+||. +
T Consensus 273 ~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~ 352 (751)
T 2xe4_A 273 SAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPR 352 (751)
T ss_dssp EEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEET
T ss_pred EEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcC
Confidence 3466789999988775421 13468899998763 22 333 34445555553 33344443 3 55554 4
Q ss_pred CCcCceee-EEeecCcceEEEEEeecCCeEEEEecCCCC--eEEEEec
Q psy505 81 NSIDTLEQ-IYENSQEDVCIVERLFSSSLVAVVSLSSPR--KLTVCHF 125 (161)
Q Consensus 81 ~~~~~~~~-~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~--~i~iWD~ 125 (161)
.++..... ++. +.....+..+.+..+.+++... .++ .|.++|+
T Consensus 353 ~~~~~~~~~li~-~~~~~~l~~~~~~~~~lv~~~~-~~g~~~l~~~dl 398 (751)
T 2xe4_A 353 GQPSDWSHVLVD-HSEDVFMESIAVRSNYLVVAGR-RAGLTRIWTMMA 398 (751)
T ss_dssp TSTTCCCCEEEC-CCSSEEEEEEEECSSEEEEEEE-ETTEEEEEEEEC
T ss_pred CCcccceeeEEC-CCCCcEEEEEEEECCEEEEEEE-eCCEEEEEEEec
Confidence 43222223 332 3334456667777666655443 333 4677775
No 270
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=90.19 E-value=8.3 Score=33.15 Aligned_cols=136 Identities=10% Similarity=-0.050 Sum_probs=77.4
Q ss_pred ceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeee---------ccCccceeee-----eEEEecCC-ceEEEE
Q psy505 15 NGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIP---------AHDSPLAALA-----SLSVGTKS-GYRLFS 79 (161)
Q Consensus 15 ~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~---------~H~~~V~~l~-----~lasgs~d-giriwd 79 (161)
..|.++..+++|.+.+.+- ++-|..++..++....... -....|.++. .|-.|+.+ |+..||
T Consensus 313 ~~v~~i~~D~~g~lWigt~---~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~ 389 (781)
T 3v9f_A 313 ASARYIFQDSFNNIWIGTW---GGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFE 389 (781)
T ss_dssp SCEEEEEECSSCCEEEEEB---SSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEE
T ss_pred CeEEEEEEeCCCCEEEEec---CCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEE
Confidence 3588888888887666532 4668888887654322211 0234577776 45556754 599999
Q ss_pred eCCcCceeeEEee-cCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEEe----cCceEEEEECCc-EEEEE
Q psy505 80 LNSIDTLEQIYEN-SQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYSF----SNTILAVKLNRK-KEEEE 153 (161)
Q Consensus 80 ~~~~~~~~~~~~~-~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~----~~~V~~v~~~~~-~~vv~ 153 (161)
..++. +...... ......|.++...+++...++. .++.|..+|.++++. ..+.. ...|.++...++ .+-+.
T Consensus 390 ~~~~~-~~~~~~~~~~~~~~v~~i~~d~~g~lWigt-~~~Gl~~~~~~~~~~-~~~~~~~~~~~~v~~i~~d~~g~lwig 466 (781)
T 3v9f_A 390 NGKRV-AIYNKENRELLSNSVLCSLKDSEGNLWFGT-YLGNISYYNTRLKKF-QIIELEKNELLDVRVFYEDKNKKIWIG 466 (781)
T ss_dssp TTEEE-EECC-----CCCSBEEEEEECTTSCEEEEE-TTEEEEEECSSSCEE-EECCSTTTCCCCEEEEEECTTSEEEEE
T ss_pred CCCCe-EEEccCCCCCCCcceEEEEECCCCCEEEEe-ccCCEEEEcCCCCcE-EEeccCCCCCCeEEEEEECCCCCEEEE
Confidence 86542 2111100 0011246677777655434433 235799999887764 33321 356888887764 55554
Q ss_pred ecc
Q psy505 154 DEE 156 (161)
Q Consensus 154 ~~~ 156 (161)
+.+
T Consensus 467 t~~ 469 (781)
T 3v9f_A 467 THA 469 (781)
T ss_dssp ETT
T ss_pred ECC
Confidence 443
No 271
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=90.17 E-value=4.8 Score=30.34 Aligned_cols=108 Identities=9% Similarity=-0.012 Sum_probs=58.1
Q ss_pred ceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee-------eEEEecCCc--eEEEEeCCcCc
Q psy505 15 NGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA-------SLSVGTKSG--YRLFSLNSIDT 85 (161)
Q Consensus 15 ~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~-------~lasgs~dg--iriwd~~~~~~ 85 (161)
.....++++|+|.++++... .+.|..||..++ ....+.. .....+++ +++....++ +..+|..+|+
T Consensus 32 ~~pegia~~~~g~lyv~d~~--~~~I~~~d~~g~-~~~~~~~-~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~- 106 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHE--VGEIVSITPDGN-QQIHATV-EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT- 106 (306)
T ss_dssp CCEEEEEECTTSCEEEEETT--TTEEEEECTTCC-EEEEEEC-SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC-
T ss_pred CCcceEEECCCCCEEEEeCC--CCeEEEECCCCc-eEEEEeC-CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe-
Confidence 33456777888887666433 689999998753 3333332 23455665 444433444 5556666765
Q ss_pred eeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCC
Q psy505 86 LEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRG 128 (161)
Q Consensus 86 ~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~ 128 (161)
+..+....... .-..++..++...+++....+.|..+|..++
T Consensus 107 ~~~~~~~~~~~-~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~ 148 (306)
T 2p4o_A 107 VETLLTLPDAI-FLNGITPLSDTQYLTADSYRGAIWLIDVVQP 148 (306)
T ss_dssp EEEEEECTTCS-CEEEEEESSSSEEEEEETTTTEEEEEETTTT
T ss_pred EEEEEeCCCcc-ccCcccccCCCcEEEEECCCCeEEEEeCCCC
Confidence 32232211111 1123333445555555545667888887654
No 272
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=89.85 E-value=6.2 Score=31.16 Aligned_cols=134 Identities=5% Similarity=-0.061 Sum_probs=68.9
Q ss_pred eeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee-------eEEEecCCc-eEEEEeCCcCcee
Q psy505 16 GICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA-------SLSVGTKSG-YRLFSLNSIDTLE 87 (161)
Q Consensus 16 ~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~-------~lasgs~dg-iriwd~~~~~~~~ 87 (161)
...++++++.+..|..+... .+.|..+++.++.....+........+++ ++.+-+..+ |.+.++.... ..
T Consensus 117 ~~~gl~~d~~~~~ly~~D~~-~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~-~~ 194 (386)
T 3v65_B 117 NAIALDFHHRRELVFWSDVT-LDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-RK 194 (386)
T ss_dssp CEEEEEEETTTTEEEEEETT-TTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS-CE
T ss_pred ccEEEEEecCCCeEEEEeCC-CCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc-eE
Confidence 45577777643333333332 68899999987654333332222334444 333444444 8888875432 22
Q ss_pred eEEeecCcceEEEEEeecC-CeEEEEecCCC-CeEEEEecCCCCeEEEEEe--cCceEEEEECCc--EEEEEe
Q psy505 88 QIYENSQEDVCIVERLFSS-SLVAVVSLSSP-RKLTVCHFKRGSEICNYSF--SNTILAVKLNRK--KEEEED 154 (161)
Q Consensus 88 ~~~~~~~~~~~v~~~~fs~-~~~~~~s~~~d-~~i~iWD~~~~~~i~~l~~--~~~V~~v~~~~~--~~vv~~ 154 (161)
.+...... .-..+++.| ++...++.... +.|...|..... ...+.. -....+++|+|+ +|.++.
T Consensus 195 ~l~~~~l~--~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~~~~PnGlavd~~~~~lY~aD 264 (386)
T 3v65_B 195 VLLWQSLE--KPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVD 264 (386)
T ss_dssp EEECSSCS--CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEECSSCSCEEEEEEEGGGTEEEEEE
T ss_pred EeecCCCC--CCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC-cEEEEECCCCCeeeEEEeCCCCEEEEEE
Confidence 23222111 124566665 44444444333 678888876432 233321 234677888753 666654
No 273
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=89.25 E-value=0.88 Score=38.80 Aligned_cols=52 Identities=17% Similarity=0.141 Sum_probs=38.2
Q ss_pred cceEEEEEcCCCCceeeeeccCccce-e-ee----eEEEecCCc-eEEEEeCCcCceeeE
Q psy505 37 IGEVQIFDADNLHAKTMIPAHDSPLA-A-LA----SLSVGTKSG-YRLFSLNSIDTLEQI 89 (161)
Q Consensus 37 dg~v~iWd~~~~~~~~~l~~H~~~V~-~-l~----~lasgs~dg-iriwd~~~~~~~~~~ 89 (161)
+|.+.-||+.+|+.+...+.. .++. + ++ ++..|+.|| ++.||.++|+.+-+.
T Consensus 452 ~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~ 510 (599)
T 1w6s_A 452 LGQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKF 510 (599)
T ss_dssp CEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred cCeEEEEECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEe
Confidence 589999999999988877522 2222 1 22 566689999 999999999866443
No 274
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=89.24 E-value=13 Score=34.15 Aligned_cols=111 Identities=17% Similarity=0.213 Sum_probs=62.4
Q ss_pred ceEEEEEcCCCCceeeee-ccCccceeee----------eEEEec----------CCc-eEEEEeCCcCceeeEEeec-C
Q psy505 38 GEVQIFDADNLHAKTMIP-AHDSPLAALA----------SLSVGT----------KSG-YRLFSLNSIDTLEQIYENS-Q 94 (161)
Q Consensus 38 g~v~iWd~~~~~~~~~l~-~H~~~V~~l~----------~lasgs----------~dg-iriwd~~~~~~~~~~~~~~-~ 94 (161)
+.|++.|..+.+.+..++ .....+.|++ +|+.|+ ..| |.+|++..+ .++.+.+.. .
T Consensus 807 s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~-kL~lv~~~~v~ 885 (1158)
T 3ei3_A 807 HNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDG-KLQTVAEKEVK 885 (1158)
T ss_dssp EEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETT-EEEEEEEEEES
T ss_pred EEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECC-EEEEEEEEEcC
Confidence 469999998888765543 2223344444 788777 357 999999743 453333221 2
Q ss_pred cceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEE-EEE-ecCc-eEEEEECCcEEEEEe
Q psy505 95 EDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEIC-NYS-FSNT-ILAVKLNRKKEEEED 154 (161)
Q Consensus 95 ~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~-~l~-~~~~-V~~v~~~~~~~vv~~ 154 (161)
+++...+ .|. +..+++-+ ++|+|||+...+.+. +.. |+.. +..++...++++|..
T Consensus 886 g~v~al~-~~~--g~Lla~ig--~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD 943 (1158)
T 3ei3_A 886 GAVYSMV-EFN--GKLLASIN--STVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGD 943 (1158)
T ss_dssp SCEEEEE-EET--TEEEEEET--TEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEE
T ss_pred CcCEEEe-eeC--CEEEEEcC--CEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEE
Confidence 3333222 243 34455432 589999998776443 333 3221 334555556665543
No 275
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=88.02 E-value=9 Score=30.69 Aligned_cols=78 Identities=10% Similarity=0.057 Sum_probs=55.5
Q ss_pred eEEEEeCCcCceeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEEecCceEEEEE-CCcEEEEE
Q psy505 75 YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYSFSNTILAVKL-NRKKEEEE 153 (161)
Q Consensus 75 iriwd~~~~~~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~~~~V~~v~~-~~~~~vv~ 153 (161)
+-|-|+.++... .++.-... ..-|..+.+.+++=++ ++|+|+|+++.+.+..+.++..|.==+| |++.|++|
T Consensus 51 VvIiDl~n~~~~--~Rrpi~Ad--sAIMnP~~~ViALrag---~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~lV 123 (365)
T 2xzh_A 51 VVIIDMNDPSNP--IRRPISAD--SAIMNPASKVIALKAG---KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALV 123 (365)
T ss_dssp EEEEETTSTTSC--EEEECCCS--EEEECSSSSEEEEEET---TEEEEEETTTTEEEEEEECSSCEEEEEECSSSEEEEE
T ss_pred EEEEECCCCCCc--cccccccc--eeeeCCCccEEEEecC---CeEEEechHHhhhhcceecCCccEEEEecCCCeEEEE
Confidence 788888776543 23332222 1234556666677653 5899999999999999998776665555 99999999
Q ss_pred ecccee
Q psy505 154 DEEEEK 159 (161)
Q Consensus 154 ~~~~~~ 159 (161)
++..+|
T Consensus 124 T~taVy 129 (365)
T 2xzh_A 124 TDNAVY 129 (365)
T ss_dssp ESSEEE
T ss_pred cCCcEE
Confidence 999886
No 276
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=87.45 E-value=1.5 Score=39.44 Aligned_cols=36 Identities=19% Similarity=0.283 Sum_probs=26.9
Q ss_pred EEEEEeecCC--eEEEEecCCCCeEEEEecCCCCeEEEEE
Q psy505 98 CIVERLFSSS--LVAVVSLSSPRKLTVCHFKRGSEICNYS 135 (161)
Q Consensus 98 ~v~~~~fs~~--~~~~~s~~~d~~i~iWD~~~~~~i~~l~ 135 (161)
.+.+++..++ .+..++ -|+++||||+.+++|+.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~--~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLS--LDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEE--TTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEE--CCCEEEEEECCCCCeEeeec
Confidence 4566677665 444444 68999999999999998764
No 277
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=87.42 E-value=8.2 Score=29.56 Aligned_cols=140 Identities=8% Similarity=0.043 Sum_probs=65.6
Q ss_pred ceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeee-eccCccceeee-----eEEEecCCc-eEEEEeCCcCcee
Q psy505 15 NGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMI-PAHDSPLAALA-----SLSVGTKSG-YRLFSLNSIDTLE 87 (161)
Q Consensus 15 ~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l-~~H~~~V~~l~-----~lasgs~dg-iriwd~~~~~~~~ 87 (161)
..+.+++++|++.+++++.. .+..+-+|-. ++.-..+ ..+...+.++. .+..++.+| +++++...|+.-.
T Consensus 163 ~~~~~~~~~~~~~~~~~g~~--G~~~~S~d~g-G~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~ 239 (327)
T 2xbg_A 163 GVMRNLNRSPSGEYVAVSSR--GSFYSTWEPG-QTAWEPHNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWG 239 (327)
T ss_dssp CCEEEEEECTTSCEEEEETT--SSEEEEECTT-CSSCEEEECCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEEC
T ss_pred cceEEEEEcCCCcEEEEECC--CcEEEEeCCC-CCceeECCCCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeE
Confidence 35778888888888877532 3344555531 2221122 12233444444 222334556 6665322222111
Q ss_pred eEEeec-CcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEE----ecCceEEEEE-CCcEEEEEecc-cee
Q psy505 88 QIYENS-QEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYS----FSNTILAVKL-NRKKEEEEDEE-EEK 159 (161)
Q Consensus 88 ~~~~~~-~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~----~~~~V~~v~~-~~~~~vv~~~~-~~~ 159 (161)
.....+ .....+..++|.++...++.+. ++.| .+....|+-=..+. .+..+.+|.| ++..++++..+ .|.
T Consensus 240 ~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~ 316 (327)
T 2xbg_A 240 ELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILL 316 (327)
T ss_dssp CCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEE
T ss_pred eccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcCCceEE
Confidence 111110 0112356777876655445442 3455 34444444333332 1356788888 45565555544 443
No 278
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=87.32 E-value=12 Score=31.24 Aligned_cols=126 Identities=15% Similarity=0.300 Sum_probs=75.2
Q ss_pred eeEEeecCCCceEEEEcCCC-----CcceEEEEEcCCCCceeeeeccCccceeee-----------eEEEecCCc--eEE
Q psy505 16 GICCLCVNSDNCYLAYPGSN-----SIGEVQIFDADNLHAKTMIPAHDSPLAALA-----------SLSVGTKSG--YRL 77 (161)
Q Consensus 16 ~v~~~~~~~d~~~la~~g~~-----~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~-----------~lasgs~dg--iri 77 (161)
.|.....++|.++++..|.. ..|.+.||..+. +.-+.++||...-.++. +||.=+..| +.|
T Consensus 152 QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi 230 (494)
T 1bpo_A 152 QIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHI 230 (494)
T ss_dssp EEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEE
T ss_pred eEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEE
Confidence 45566668888888866531 158899999874 55578889876554443 444444444 888
Q ss_pred EEeCCc---C-cee----eEEee--cCcceEEEEEeecC--CeEEEEecCCCCeEEEEecCCCCeEEEEEe-cCceEEEE
Q psy505 78 FSLNSI---D-TLE----QIYEN--SQEDVCIVERLFSS--SLVAVVSLSSPRKLTVCHFKRGSEICNYSF-SNTILAVK 144 (161)
Q Consensus 78 wd~~~~---~-~~~----~~~~~--~~~~~~v~~~~fs~--~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~-~~~V~~v~ 144 (161)
-++.+. . ++. .++-. ..++.++ +|..|+ ..+++++- -+-|+++|+++|.++..-.. .++|.-.+
T Consensus 231 ~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPv-amqvs~kygviyviTK--~G~i~lyDleTgt~i~~nrIs~~~iF~t~ 307 (494)
T 1bpo_A 231 IEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV-AMQISEKHDVVFLITK--YGYIHLYDLETGTCIYMNRISGETIFVTA 307 (494)
T ss_dssp EECSCCCTTCCCCCCEEEECCCCTTSTTCCEE-EEEEETTTTEEEEEET--TSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred EEcCCCccCCCCccceeeeeeCCcccccCcee-EEEecccCCEEEEEec--CceEEEEecccceeeeeecccCCceEEec
Confidence 887432 1 111 11100 1123332 344443 56677774 45899999999999866553 35555444
Q ss_pred E
Q psy505 145 L 145 (161)
Q Consensus 145 ~ 145 (161)
-
T Consensus 308 ~ 308 (494)
T 1bpo_A 308 P 308 (494)
T ss_dssp E
T ss_pred c
Confidence 3
No 279
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=86.96 E-value=1.8 Score=38.89 Aligned_cols=42 Identities=17% Similarity=0.129 Sum_probs=31.8
Q ss_pred CCCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeee
Q psy505 12 PNPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIP 55 (161)
Q Consensus 12 ~~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~ 55 (161)
.++..+.+++..++..++.+-+. |+++|+|++.+++++.+.+
T Consensus 233 ~~~~~~~~~~~~~~~~~lftl~~--D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 233 RSPNTIISMIFLSTYNVLVMLSL--DYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CCTTCEEEEEEETTTTEEEEEET--TCEEEEEETTTTEEEEEEE
T ss_pred CCcceEEEEeecCCCcEEEEEEC--CCEEEEEECCCCCeEeeec
Confidence 34556677777777777766555 9999999999999887753
No 280
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=86.40 E-value=12 Score=31.15 Aligned_cols=60 Identities=2% Similarity=-0.119 Sum_probs=38.6
Q ss_pred EEeecC-CeEEEEecCCCCeEEEEecC-------CCCe-----------EEEE-Ee--cCceEEEEECCcE--EEEEe--
Q psy505 101 ERLFSS-SLVAVVSLSSPRKLTVCHFK-------RGSE-----------ICNY-SF--SNTILAVKLNRKK--EEEED-- 154 (161)
Q Consensus 101 ~~~fs~-~~~~~~s~~~d~~i~iWD~~-------~~~~-----------i~~l-~~--~~~V~~v~~~~~~--~vv~~-- 154 (161)
.++.+| ++...++....+.|..+|++ ++.. ...+ .. ...-..++|+|++ +.++.
T Consensus 251 giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~ 330 (496)
T 3kya_A 251 GATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVIN 330 (496)
T ss_dssp CEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETT
T ss_pred EEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCC
Confidence 456677 55656666667789999997 5654 2333 22 2456789999984 56663
Q ss_pred ccceee
Q psy505 155 EEEEKK 160 (161)
Q Consensus 155 ~~~~~~ 160 (161)
..+|+|
T Consensus 331 ~h~I~k 336 (496)
T 3kya_A 331 NHYFMR 336 (496)
T ss_dssp TTEEEE
T ss_pred CCEEEE
Confidence 346665
No 281
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=85.47 E-value=9.8 Score=28.55 Aligned_cols=86 Identities=9% Similarity=-0.123 Sum_probs=49.6
Q ss_pred eEEEecCCc-eEEEEeCC-cCce-eeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEE--EEec-Cc
Q psy505 66 SLSVGTKSG-YRLFSLNS-IDTL-EQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICN--YSFS-NT 139 (161)
Q Consensus 66 ~lasgs~dg-iriwd~~~-~~~~-~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~--l~~~-~~ 139 (161)
++++-+..+ |..||... +..- .+.+.... .-..+++++++...++....+.|.++|.. |+.... +..+ ..
T Consensus 181 lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~---~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~ 256 (306)
T 2p4o_A 181 LYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQT---NIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIG 256 (306)
T ss_dssp EEEEETTTTEEEEEEBCTTSCBCCCEEEEESC---CCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTT
T ss_pred EEEEeCCCCEEEEEEeCCCCCCCccEEEeccC---CCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCC
Confidence 444555555 99999864 3210 11211111 11246678877666665556789999975 765332 2222 56
Q ss_pred eEEEEEC---Cc--EEEEEec
Q psy505 140 ILAVKLN---RK--KEEEEDE 155 (161)
Q Consensus 140 V~~v~~~---~~--~~vv~~~ 155 (161)
..+++|. |+ .|.|...
T Consensus 257 p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 257 STAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp EEEEEECCSTTTTTEEEEEEC
T ss_pred ceEEEEecccCCCCEEEEECC
Confidence 8999998 55 6666543
No 282
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=84.05 E-value=15 Score=30.67 Aligned_cols=78 Identities=10% Similarity=0.069 Sum_probs=54.5
Q ss_pred eEEEEeCCcCceeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEEecCceEEEEE-CCcEEEEE
Q psy505 75 YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYSFSNTILAVKL-NRKKEEEE 153 (161)
Q Consensus 75 iriwd~~~~~~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~~~~V~~v~~-~~~~~vv~ 153 (161)
+-|-|+.++... .++.-..+ ..-|..+.+.+++=+ .++++|+|+++.+.+..+.++..|.-=+| |++.|++|
T Consensus 50 vvIiDl~~~~~~--~rrpi~Ad--sAIMnP~~~iiALra---g~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~lV 122 (494)
T 1bpo_A 50 VVIIDMNDPSNP--IRRPISAD--SAIMNPASKVIALKA---GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALV 122 (494)
T ss_dssp EEEEETTSTTSC--EEEECCCS--EEEECSSSSCEEEEE---TTEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEEE
T ss_pred EEEEECCCCCcc--eecccccc--eeeeCCCCcEEEEec---CCeEEEEchHHhhhhcceecCCCceEEEecCCCeEEEE
Confidence 777888775543 22332222 223566667777765 35899999999999999988765544444 99999999
Q ss_pred ecccee
Q psy505 154 DEEEEK 159 (161)
Q Consensus 154 ~~~~~~ 159 (161)
++..+|
T Consensus 123 T~taVy 128 (494)
T 1bpo_A 123 TDNAVY 128 (494)
T ss_dssp CSSEEE
T ss_pred cCCeeE
Confidence 998876
No 283
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=80.63 E-value=21 Score=28.73 Aligned_cols=59 Identities=3% Similarity=-0.048 Sum_probs=33.7
Q ss_pred EEEecCCc-eEEEEeCCcCceeeEEeecCcceEEEEEeecCCeE-EEEecCCCCeEEEEecC
Q psy505 67 LSVGTKSG-YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLV-AVVSLSSPRKLTVCHFK 126 (161)
Q Consensus 67 lasgs~dg-iriwd~~~~~~~~~~~~~~~~~~~v~~~~fs~~~~-~~~s~~~d~~i~iWD~~ 126 (161)
+++-..++ |+.+|..++.....++...... .-..++|+|++. ..++....+.|..+|..
T Consensus 243 yv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~-~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 243 YYTRYHHAMISSYDPATGTLTEEEVMMDTKG-SNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp EECBTTCSEEEEECTTTCCEEEEEEECSCCS-SCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred EEEECCCCEEEEEECCCCeEEEEEeccCCCC-CcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 33334455 8899987765322333221111 112588998773 44555566789998765
No 284
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=80.16 E-value=30 Score=30.38 Aligned_cols=134 Identities=11% Similarity=-0.006 Sum_probs=70.9
Q ss_pred ceeEEeecCC-CceEEEEcCCCCcceEEEEEcCCC----CceeeeeccCccceeee-------eEEEecCCc-eEEEEeC
Q psy505 15 NGICCLCVNS-DNCYLAYPGSNSIGEVQIFDADNL----HAKTMIPAHDSPLAALA-------SLSVGTKSG-YRLFSLN 81 (161)
Q Consensus 15 ~~v~~~~~~~-d~~~la~~g~~~dg~v~iWd~~~~----~~~~~l~~H~~~V~~l~-------~lasgs~dg-iriwd~~ 81 (161)
....++++++ ++.+..+-.. .+.|+.+++... .....+...-....+|+ ++.+-+..+ |++.++.
T Consensus 424 ~~~~gl~~d~~~~~lY~sD~~--~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 424 RNVVALDTEVASNRIYWSDLS--QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 501 (791)
T ss_dssp SSEEEEEEETTTTEEEEEETT--TTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CceEEEeecccCCeeEEeecc--ceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence 3456777776 3444444332 678988888753 22333333334455666 444455555 9999986
Q ss_pred CcCceeeEEeecCcceEEEEEeecCC-eEEEEecCC-CCeEEEEecCCCCeEEEEEec--CceEEEEECC--cEEEEEe
Q psy505 82 SIDTLEQIYENSQEDVCIVERLFSSS-LVAVVSLSS-PRKLTVCHFKRGSEICNYSFS--NTILAVKLNR--KKEEEED 154 (161)
Q Consensus 82 ~~~~~~~~~~~~~~~~~v~~~~fs~~-~~~~~s~~~-d~~i~iWD~~~~~~i~~l~~~--~~V~~v~~~~--~~~vv~~ 154 (161)
. .....+...... .-..+++.|. +...++... ...|...++. |.....+... ....+|++++ .+|.++.
T Consensus 502 G-~~~~~l~~~~l~--~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d-G~~~~~lv~~~l~~P~GLavD~~~~~LYwaD 576 (791)
T 3m0c_C 502 G-VKRKTLFRENGS--KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVD 576 (791)
T ss_dssp S-SSEEEEEECTTC--CEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred C-CeEEEEEeCCCC--CcceEEEecCCCCEEEecCCCCCeEEEEecC-CCceEEEEeCCCCCceEEEEecCCCeEEEEe
Confidence 4 333233332211 1346667763 444444322 2578888876 4434444322 4677788874 4676664
No 285
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=79.90 E-value=1.1 Score=40.91 Aligned_cols=40 Identities=18% Similarity=0.135 Sum_probs=29.2
Q ss_pred CceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeee
Q psy505 14 PNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIP 55 (161)
Q Consensus 14 ~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~ 55 (161)
+..+.+++..++..++.+-+. |+++|+||+.+++++.+.+
T Consensus 237 ~~~~vs~~~~~~~~~lftL~~--D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 237 PNTIISMIFLSTYNVLVMLSL--DYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp TTCBSCCEEETTTTEEEEEBT--TCEEEEEETTTTEEEEEEE
T ss_pred cceeEEeeccCCccEEEEEeC--CCEEEEEECCCCCeEEeec
Confidence 334455555667677766555 9999999999999987754
No 286
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=79.85 E-value=22 Score=28.57 Aligned_cols=139 Identities=9% Similarity=-0.010 Sum_probs=74.7
Q ss_pred EeecCC-CceEEEEcCCCCcceEEEEEcCCCCceeee-eccCcc-ceeee-------eEEEecCCc-eEEEEeC--CcCc
Q psy505 19 CLCVNS-DNCYLAYPGSNSIGEVQIFDADNLHAKTMI-PAHDSP-LAALA-------SLSVGTKSG-YRLFSLN--SIDT 85 (161)
Q Consensus 19 ~~~~~~-d~~~la~~g~~~dg~v~iWd~~~~~~~~~l-~~H~~~-V~~l~-------~lasgs~dg-iriwd~~--~~~~ 85 (161)
.++++| +|.+.++-.. ++.|+.+|..++.....+ .....+ -..++ ++++-+..+ |+.++.. ++..
T Consensus 232 giavd~~~G~lyv~d~~--~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~ 309 (433)
T 4hw6_A 232 TCAVHPQNGKIYYTRYH--HAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKL 309 (433)
T ss_dssp CCEECTTTCCEEECBTT--CSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCB
T ss_pred EEEEeCCCCeEEEEECC--CCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCccc
Confidence 355677 6666655433 688999999877652333 211111 12344 334444445 8887764 2221
Q ss_pred e-eeEEeec-C-----cc-------eEEEEEee---------cCCeEEEEecCCCCeEEEEecCCCCeEEEEEec-----
Q psy505 86 L-EQIYENS-Q-----ED-------VCIVERLF---------SSSLVAVVSLSSPRKLTVCHFKRGSEICNYSFS----- 137 (161)
Q Consensus 86 ~-~~~~~~~-~-----~~-------~~v~~~~f---------s~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~~----- 137 (161)
. ...+.+. . +. ..-..+++ .+++...++....+.|+.+|. .|. +..+...
T Consensus 310 ~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~-v~t~~G~g~~~~ 387 (433)
T 4hw6_A 310 AVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGR-VTTYAGRGNSRE 387 (433)
T ss_dssp CCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSE-EEEEECCCTTCS
T ss_pred CcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCC-EEEEEeCCCCCc
Confidence 0 0122221 0 00 01234677 677777777767788999985 564 3333211
Q ss_pred --------------CceEEEEEC-Cc-EEEEEe--ccceeeC
Q psy505 138 --------------NTILAVKLN-RK-KEEEED--EEEEKKI 161 (161)
Q Consensus 138 --------------~~V~~v~~~-~~-~~vv~~--~~~~~~~ 161 (161)
....+|+++ ++ .|.|+. .++|+||
T Consensus 388 ~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i 429 (433)
T 4hw6_A 388 WGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKI 429 (433)
T ss_dssp SCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred cccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEE
Confidence 236789998 44 555554 2477764
No 287
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=78.91 E-value=26 Score=28.89 Aligned_cols=121 Identities=10% Similarity=0.089 Sum_probs=72.0
Q ss_pred CceEEEEcCCCCcceEEEEEcCCCCceeeeecc----Cccceeee------eEEEecCCceEEEEeCCcCc---------
Q psy505 25 DNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAH----DSPLAALA------SLSVGTKSGYRLFSLNSIDT--------- 85 (161)
Q Consensus 25 d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H----~~~V~~l~------~lasgs~dgiriwd~~~~~~--------- 85 (161)
+|.-++..- ++.||.=++..+..=+.+... -+.|..+. +||..+..+|.|-.+..+..
T Consensus 31 n~t~i~~a~---~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~ 107 (452)
T 3pbp_A 31 NGTRIVFIQ---DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQD 107 (452)
T ss_dssp TTTEEEEEE---TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHH
T ss_pred CCCEEEEEE---CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccccccc
Confidence 444444422 678998888855433344432 22465555 88888888888888763221
Q ss_pred -ee-eEEeec-C---cceEEEEEeecC---CeEEEEecCCCCeEEEEecCCCC--eEEEEE-----ec-----CceEEEE
Q psy505 86 -LE-QIYENS-Q---EDVCIVERLFSS---SLVAVVSLSSPRKLTVCHFKRGS--EICNYS-----FS-----NTILAVK 144 (161)
Q Consensus 86 -~~-~~~~~~-~---~~~~v~~~~fs~---~~~~~~s~~~d~~i~iWD~~~~~--~i~~l~-----~~-----~~V~~v~ 144 (161)
+. +.++-. . ....|..+.|+| ++..++.-.+|++|++||+.+.. +. .+. |. ..|.++.
T Consensus 108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~ 186 (452)
T 3pbp_A 108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLE 186 (452)
T ss_dssp TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEE
T ss_pred ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEE
Confidence 10 122211 0 134588999998 33344444468899999998732 22 231 22 4688899
Q ss_pred ECCcE
Q psy505 145 LNRKK 149 (161)
Q Consensus 145 ~~~~~ 149 (161)
|.+++
T Consensus 187 Fg~~~ 191 (452)
T 3pbp_A 187 FSKDG 191 (452)
T ss_dssp ECTTS
T ss_pred EcCCC
Confidence 98874
No 288
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=78.89 E-value=9.7 Score=32.83 Aligned_cols=130 Identities=12% Similarity=-0.004 Sum_probs=60.2
Q ss_pred EeecCC-CceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee-------eEEEecCC-c-eEEEEeCCcCceee
Q psy505 19 CLCVNS-DNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA-------SLSVGTKS-G-YRLFSLNSIDTLEQ 88 (161)
Q Consensus 19 ~~~~~~-d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~-------~lasgs~d-g-iriwd~~~~~~~~~ 88 (161)
.|++++ ++.+.++ ... .+.|.+.|+........+...-...++++ ++.+-... + |..+++.. .....
T Consensus 457 glavD~~~g~LY~t-D~~-~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG-~~~~~ 533 (699)
T 1n7d_A 457 GLAVDWIHSNIYWT-DSV-LGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYS 533 (699)
T ss_dssp CEECCCSSSBCEEC-CTT-TSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS-CCCCE
T ss_pred eEEEEeeCCcEEEE-ecc-CCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC-CCeeE
Confidence 455554 3333333 332 67899999876544333332223334444 22222222 4 66666532 22211
Q ss_pred EEeecCcceEEEEEeecCC-eEEEEecCCCCeEEEEecCCCCeEEEEE-e---cCceEEEEECCcEEEEEe
Q psy505 89 IYENSQEDVCIVERLFSSS-LVAVVSLSSPRKLTVCHFKRGSEICNYS-F---SNTILAVKLNRKKEEEED 154 (161)
Q Consensus 89 ~~~~~~~~~~v~~~~fs~~-~~~~~s~~~d~~i~iWD~~~~~~i~~l~-~---~~~V~~v~~~~~~~vv~~ 154 (161)
+....-. .-..++++|+ +...++.+..+.|..+|+.... ...+. . -....++++..++++++.
T Consensus 534 l~~~~l~--~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~~lywtd 601 (699)
T 1n7d_A 534 LVTENIQ--WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFEDKVFWTD 601 (699)
T ss_dssp ESCSSCS--SCCCEEECTTTCCEEEEETTTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEETTEEEEEC
T ss_pred EEeCCCC--CccEEEEeccCCEEEEEecCCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEECCEEEEEe
Confidence 2111100 1134667753 3333444456789999986432 22221 1 123345555556665554
No 289
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=78.88 E-value=19 Score=27.29 Aligned_cols=134 Identities=9% Similarity=-0.014 Sum_probs=68.8
Q ss_pred eEEeecCCCceEEEEcCCCCcceEEEEEcCC----CCceeeeeccCccceeee-------eEEEecCCc-eEEEEeCCcC
Q psy505 17 ICCLCVNSDNCYLAYPGSNSIGEVQIFDADN----LHAKTMIPAHDSPLAALA-------SLSVGTKSG-YRLFSLNSID 84 (161)
Q Consensus 17 v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~----~~~~~~l~~H~~~V~~l~-------~lasgs~dg-iriwd~~~~~ 84 (161)
..++++++++..|..+... .+.|..+|+.+ ......+...-....+++ ++.+-+..+ |.++|... .
T Consensus 32 p~g~~~d~~~~~ly~~D~~-~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g-~ 109 (316)
T 1ijq_A 32 VVALDTEVASNRIYWSDLS-QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG-V 109 (316)
T ss_dssp EEEEEEETTTTEEEEEETT-TTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS-S
T ss_pred eEEEEEEeCCCEEEEEECC-CCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC-C
Confidence 4577777754344333332 68999999886 222223332222335554 333434445 88998854 3
Q ss_pred ceeeEEeecCcceEEEEEeecC-CeEEEEecCCC-CeEEEEecCCCCeEEEEEe--cCceEEEEECCc--EEEEEec
Q psy505 85 TLEQIYENSQEDVCIVERLFSS-SLVAVVSLSSP-RKLTVCHFKRGSEICNYSF--SNTILAVKLNRK--KEEEEDE 155 (161)
Q Consensus 85 ~~~~~~~~~~~~~~v~~~~fs~-~~~~~~s~~~d-~~i~iWD~~~~~~i~~l~~--~~~V~~v~~~~~--~~vv~~~ 155 (161)
....+...... .-..++..| ++...++.... +.|...|.. |+....+.. -....+++++++ ++.++..
T Consensus 110 ~~~~~~~~~~~--~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~ 183 (316)
T 1ijq_A 110 KRKTLFRENGS--KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDS 183 (316)
T ss_dssp SEEEEEECTTC--CEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred ceEEEEECCCC--CcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEEC
Confidence 33233332111 124666776 45444444332 578888875 443334321 245678888853 6666653
No 290
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=75.67 E-value=26 Score=27.09 Aligned_cols=130 Identities=8% Similarity=-0.060 Sum_probs=65.5
Q ss_pred EeecCC-CceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee-------eEEEecCC-c-eEEEEeCCcCceee
Q psy505 19 CLCVNS-DNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA-------SLSVGTKS-G-YRLFSLNSIDTLEQ 88 (161)
Q Consensus 19 ~~~~~~-d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~-------~lasgs~d-g-iriwd~~~~~~~~~ 88 (161)
.+++++ ++.+..+-.. .+.|.+.++........+...-..-++++ ++.+-... + |..+++.. .....
T Consensus 120 glavd~~~g~ly~~d~~--~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~ 196 (349)
T 3v64_C 120 GLAVDWVHDKLYWTDSG--TSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG-SGRRI 196 (349)
T ss_dssp EEEEETTTTEEEEEETT--TTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CSCEE
T ss_pred EEEEecCCCeEEEEcCC--CCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC-CCcEE
Confidence 455565 3444444333 67899999876544333333333345555 33333333 5 77777643 22212
Q ss_pred EEeecCcceEEEEEeecC-CeEEEEecCCCCeEEEEecCCCCeEEEEE-e-cCceEEEEECCcEEEEEe
Q psy505 89 IYENSQEDVCIVERLFSS-SLVAVVSLSSPRKLTVCHFKRGSEICNYS-F-SNTILAVKLNRKKEEEED 154 (161)
Q Consensus 89 ~~~~~~~~~~v~~~~fs~-~~~~~~s~~~d~~i~iWD~~~~~~i~~l~-~-~~~V~~v~~~~~~~vv~~ 154 (161)
+..... ..-..++++| ++...++....+.|..+|..... ...+. . -....++++..+.+.++.
T Consensus 197 ~~~~~~--~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~-~~~~~~~~~~~P~giav~~~~ly~td 262 (349)
T 3v64_C 197 IADTHL--FWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH-RKAVISQGLPHPFAITVFEDSLYWTD 262 (349)
T ss_dssp SCCSSC--SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSSEEEEEEETTEEEEEE
T ss_pred EEECCC--CCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCc-eEEEEeCCCCCceEEEEECCEEEEec
Confidence 211111 1234677775 44444545556789999976433 22222 1 234455666555665554
No 291
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=75.31 E-value=28 Score=27.46 Aligned_cols=135 Identities=9% Similarity=-0.003 Sum_probs=68.7
Q ss_pred ceeEEeecCCCceEEEEcCCCCcceEEEEEcCCC----CceeeeeccCccceeee-------eEEEecCCc-eEEEEeCC
Q psy505 15 NGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNL----HAKTMIPAHDSPLAALA-------SLSVGTKSG-YRLFSLNS 82 (161)
Q Consensus 15 ~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~----~~~~~l~~H~~~V~~l~-------~lasgs~dg-iriwd~~~ 82 (161)
....++++++.+..|-.+... .+.|+.+++... .....+...-....+++ ++.+-+..+ |.+.++..
T Consensus 112 ~~~~~l~~d~~~~~lywsD~~-~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 112 RNVVALDTEVASNRIYWSDLS-QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETT-TTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred CcceEEeeeeccCceEEEecC-CCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 346678887643333333332 678998998752 22223332333445555 334444455 88888864
Q ss_pred cCceeeEEeecCcceEEEEEeecC-CeEEEEecC-CCCeEEEEecCCCCeEEEEEe--cCceEEEEECCc--EEEEEe
Q psy505 83 IDTLEQIYENSQEDVCIVERLFSS-SLVAVVSLS-SPRKLTVCHFKRGSEICNYSF--SNTILAVKLNRK--KEEEED 154 (161)
Q Consensus 83 ~~~~~~~~~~~~~~~~v~~~~fs~-~~~~~~s~~-~d~~i~iWD~~~~~~i~~l~~--~~~V~~v~~~~~--~~vv~~ 154 (161)
.. ...+...... .-..+++.| ++...++.. ....|...|..... ...+.. -....+++++++ +|.++.
T Consensus 191 ~~-~~~l~~~~~~--~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~-~~~~~~~~l~~P~glavd~~~~~lY~aD 264 (400)
T 3p5b_L 191 VK-RKTLFRENGS--KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRLYWVD 264 (400)
T ss_dssp CS-EEEEEECSSC--CEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS-CEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred Cc-eEEEEeCCCC--CcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc-cEEEEECCCCceEEEEEEeCCCEEEEEE
Confidence 32 3233322111 134566776 444444432 23568888876333 333322 246677888753 666664
No 292
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=74.70 E-value=31 Score=27.58 Aligned_cols=106 Identities=8% Similarity=0.055 Sum_probs=53.4
Q ss_pred eeEEeecCCCceEEEEcCCCCcc----eEEEEEcCCCCce--eeeeccCccceeee-------eEEEecCCc-eEEEEeC
Q psy505 16 GICCLCVNSDNCYLAYPGSNSIG----EVQIFDADNLHAK--TMIPAHDSPLAALA-------SLSVGTKSG-YRLFSLN 81 (161)
Q Consensus 16 ~v~~~~~~~d~~~la~~g~~~dg----~v~iWd~~~~~~~--~~l~~H~~~V~~l~-------~lasgs~dg-iriwd~~ 81 (161)
..+.++++++|..|..+... .+ .+...+. .+... ..+..- ....+++ ++++-..++ |..||..
T Consensus 180 ~P~~ia~d~~G~~lyvad~~-~~~~~~~v~~~~~-~g~~~~~~~l~~~-~~p~giavdp~~g~lyv~d~~~~~V~~~~~~ 256 (430)
T 3tc9_A 180 KVRTICWTHEADSMIITNDQ-NNNDRPNNYILTR-ESGFKVITELTKG-QNCNGAETHPINGELYFNSWNAGQVFRYDFT 256 (430)
T ss_dssp CEEEEEECTTSSEEEEEECC-SCTTSEEEEEEEG-GGTSCSEEEEEEC-SSCCCEEECTTTCCEEEEETTTTEEEEEETT
T ss_pred CcceEEEeCCCCEEEEEeCC-CCcccceEEEEeC-CCceeeeeeeccC-CCceEEEEeCCCCEEEEEECCCCEEEEEECC
Confidence 46678888888744433321 22 2333343 33322 233221 1223333 344444445 8899987
Q ss_pred CcCceeeEEeecCcceEEEEEeecCCeE-EEEecCCCCeEEEEecC
Q psy505 82 SIDTLEQIYENSQEDVCIVERLFSSSLV-AVVSLSSPRKLTVCHFK 126 (161)
Q Consensus 82 ~~~~~~~~~~~~~~~~~v~~~~fs~~~~-~~~s~~~d~~i~iWD~~ 126 (161)
++. ...+..... ...-..++|+|++. ..++....+.|..+|..
T Consensus 257 ~~~-~~~~~~~~~-~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 257 TQE-TTPLFTIQD-SGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp TTE-EEEEEECSS-SSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred CCc-EEEEEEcCC-CCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 643 212222111 11124678998774 45555566789998765
No 293
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=73.72 E-value=7.1 Score=34.24 Aligned_cols=36 Identities=19% Similarity=0.322 Sum_probs=27.2
Q ss_pred EEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEEe
Q psy505 99 IVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYSF 136 (161)
Q Consensus 99 v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~ 136 (161)
|.++.+....+..++ -|+++|+||+++++++.+...
T Consensus 224 Is~~~~~~~fLftL~--~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 224 ISCKLFHERYLIVLT--QNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEETTTEEEEEE--TTCEEEEEETTTTEEEEEEET
T ss_pred EEEeccCCcEEEEEE--cCCeEEEEEcCCCceEEeecc
Confidence 445566656666665 578999999999999988764
No 294
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=72.07 E-value=29 Score=26.05 Aligned_cols=139 Identities=14% Similarity=0.160 Sum_probs=77.5
Q ss_pred CCCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCce---eeee------ccCccceeee------eEEEecCCc-e
Q psy505 12 PNPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAK---TMIP------AHDSPLAALA------SLSVGTKSG-Y 75 (161)
Q Consensus 12 ~~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~---~~l~------~H~~~V~~l~------~lasgs~dg-i 75 (161)
.++.|| ++.+++.++++.-. ++.+.++++.....+ .... .++....+++ .|.++.+.. .
T Consensus 70 ~D~EGI---a~~~~g~~~vs~E~--~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~ 144 (255)
T 3qqz_A 70 KDLETI---EYIGDNQFVISDER--DYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPI 144 (255)
T ss_dssp SSEEEE---EECSTTEEEEEETT--TTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSE
T ss_pred CChHHe---EEeCCCEEEEEECC--CCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCc
Confidence 344444 44567777665443 678888887765432 2221 1223345676 444455655 6
Q ss_pred EEEEeC---CcCceeeEEee-------cCcceEEEEEeecC--CeEEEEecCCCCeEEEEecCCCCeEEEEEec------
Q psy505 76 RLFSLN---SIDTLEQIYEN-------SQEDVCIVERLFSS--SLVAVVSLSSPRKLTVCHFKRGSEICNYSFS------ 137 (161)
Q Consensus 76 riwd~~---~~~~~~~~~~~-------~~~~~~v~~~~fs~--~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~~------ 137 (161)
+||... ++..+ ..... +... .-+++|.| +-++++|. ..+.|.++|.+ |+.+..+...
T Consensus 145 ~i~~~~g~~~~~~l-~i~~~~~~~~~~~~~d--~S~l~~dp~tg~lliLS~-~s~~L~~~d~~-g~~~~~~~L~~g~~~l 219 (255)
T 3qqz_A 145 EVYKVNGLLSSNEL-HISKDKALQRQFTLDD--VSGAEFNQQKNTLLVLSH-ESRALQEVTLV-GEVIGEMSLTKGSRGL 219 (255)
T ss_dssp EEEEEESTTCSSCC-EEEECHHHHHTCCSSC--CCEEEEETTTTEEEEEET-TTTEEEEECTT-CCEEEEEECSTTGGGC
T ss_pred eEEEEcccccCCce-eeecchhhccccccCC--ceeEEEcCCCCeEEEEEC-CCCeEEEEcCC-CCEEEEEEcCCccCCc
Confidence 677664 11112 12110 1112 23556665 55777776 55789999965 7777777643
Q ss_pred ----CceEEEEECCc--EEEEEeccceee
Q psy505 138 ----NTILAVKLNRK--KEEEEDEEEEKK 160 (161)
Q Consensus 138 ----~~V~~v~~~~~--~~vv~~~~~~~~ 160 (161)
.+--+|+|.++ -.++...|.+|+
T Consensus 220 ~~~~~qpEGia~d~~G~lyIvsE~n~~y~ 248 (255)
T 3qqz_A 220 SHNIKQAEGVAMDASGNIYIVSEPNRFYR 248 (255)
T ss_dssp SSCCCSEEEEEECTTCCEEEEETTTEEEE
T ss_pred ccccCCCCeeEECCCCCEEEEcCCceEEE
Confidence 26688999887 333444555554
No 295
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=71.70 E-value=34 Score=26.77 Aligned_cols=129 Identities=9% Similarity=-0.059 Sum_probs=62.8
Q ss_pred eecCC-CceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee-------eEEEecCC-c-eEEEEeCCcCceeeE
Q psy505 20 LCVNS-DNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA-------SLSVGTKS-G-YRLFSLNSIDTLEQI 89 (161)
Q Consensus 20 ~~~~~-d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~-------~lasgs~d-g-iriwd~~~~~~~~~~ 89 (161)
+++++ ++.+..+-.. .+.|.+.++........+...-..-++++ ++.+-... + |..+++.. .....+
T Consensus 164 lavd~~~g~lY~~d~~--~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~ 240 (386)
T 3v65_B 164 LAVDWVHDKLYWTDSG--TSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG-SGRRII 240 (386)
T ss_dssp EEEETTTTEEEEEETT--TTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CSCEEE
T ss_pred EEEEeCCCeEEEEcCC--CCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC-CCcEEE
Confidence 44454 3333333232 57888888875443333333323345555 33333333 4 77777643 222222
Q ss_pred EeecCcceEEEEEeecC-CeEEEEecCCCCeEEEEecCCCCeEEEEEe--cCceEEEEECCcEEEEEe
Q psy505 90 YENSQEDVCIVERLFSS-SLVAVVSLSSPRKLTVCHFKRGSEICNYSF--SNTILAVKLNRKKEEEED 154 (161)
Q Consensus 90 ~~~~~~~~~v~~~~fs~-~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~--~~~V~~v~~~~~~~vv~~ 154 (161)
...... .-..++++| ++...++....+.|..+|...... ..+.. .....++++..+.+.++.
T Consensus 241 ~~~~~~--~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~P~giav~~~~ly~td 305 (386)
T 3v65_B 241 ADTHLF--WPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAVISQGLPHPFAITVFEDSLYWTD 305 (386)
T ss_dssp ECSSCS--CEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC-EEEECSSCSSEEEEEEETTEEEEEE
T ss_pred EECCCC--CeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee-EEEEECCCCCceEEEEECCEEEEee
Confidence 221111 134667774 333344444567899999764332 22221 234456666555655554
No 296
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=71.53 E-value=21 Score=27.71 Aligned_cols=53 Identities=11% Similarity=0.164 Sum_probs=35.6
Q ss_pred EEEeecCCeEEEEecCCCCeEEEEecCCCCe--EEEEE-e---cCceEEEEECCc-----EEEEEec
Q psy505 100 VERLFSSSLVAVVSLSSPRKLTVCHFKRGSE--ICNYS-F---SNTILAVKLNRK-----KEEEEDE 155 (161)
Q Consensus 100 ~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~--i~~l~-~---~~~V~~v~~~~~-----~~vv~~~ 155 (161)
..|+|.|++..+++.. ++.|++++ .++. +..+. + .....+++|+|+ .+.|+..
T Consensus 34 ~~ia~~pdG~l~V~e~-~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~ 97 (352)
T 2ism_A 34 WALAFLPDGGMLIAER-PGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRT 97 (352)
T ss_dssp EEEEECTTSCEEEEET-TTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEE
T ss_pred eEEEEcCCCeEEEEeC-CCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEe
Confidence 4788999988777764 47899998 3432 22221 1 246889999998 6777654
No 297
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=71.49 E-value=31 Score=26.20 Aligned_cols=106 Identities=16% Similarity=0.070 Sum_probs=50.1
Q ss_pred CceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeec----cCccceeee------eEEEecCCc-eEEEEeCC
Q psy505 14 PNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPA----HDSPLAALA------SLSVGTKSG-YRLFSLNS 82 (161)
Q Consensus 14 ~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~----H~~~V~~l~------~lasgs~dg-iriwd~~~ 82 (161)
+..+..++++|++..++.+. +|.+++++...|+.-..+.. +...+.++. +++++. +| + .+....
T Consensus 204 ~~~~~~~~~~~~g~~~~~~~---~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~Dg 278 (327)
T 2xbg_A 204 SRRLHNMGFTPDGRLWMIVN---GGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDG 278 (327)
T ss_dssp SSCEEEEEECTTSCEEEEET---TTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESST
T ss_pred CCccceeEECCCCCEEEEeC---CceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCC
Confidence 34677788888887776643 68887774322322222211 122345554 455554 45 5 344444
Q ss_pred cCceeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEec
Q psy505 83 IDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHF 125 (161)
Q Consensus 83 ~~~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~ 125 (161)
|+.-.....+...+..+..+.|.++...++.+ .+++|.-++-
T Consensus 279 G~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G-~~G~i~~~~~ 320 (327)
T 2xbg_A 279 GQTWQQDVDVKKVPSNFYKILFFSPDQGFILG-QKGILLRYVT 320 (327)
T ss_dssp TSSCEECGGGTTSSSCCCEEEEEETTEEEEEC-STTEEEEECC
T ss_pred CcccEEcCccCCCCCCeEEEEEECCCceEEEc-CCceEEEEcC
Confidence 43221111110001123455665444444444 4567766654
No 298
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=70.62 E-value=37 Score=26.75 Aligned_cols=111 Identities=13% Similarity=0.023 Sum_probs=60.2
Q ss_pred eeEEeec---CCCceEEEEcC------------CCCcceEEEEEcC---CCCceeeee--ccC-----------ccceee
Q psy505 16 GICCLCV---NSDNCYLAYPG------------SNSIGEVQIFDAD---NLHAKTMIP--AHD-----------SPLAAL 64 (161)
Q Consensus 16 ~v~~~~~---~~d~~~la~~g------------~~~dg~v~iWd~~---~~~~~~~l~--~H~-----------~~V~~l 64 (161)
....|.+ +|++.++++.. +. +..|..+|+. +++.+.... +.. ....++
T Consensus 64 ~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g-~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDv 142 (334)
T 2p9w_A 64 QMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHG-ASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQS 142 (334)
T ss_dssp EEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSS-CCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEE
T ss_pred eeeEEEEeccCCCCcEEEEEcccccccccccccCC-CCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCcee
Confidence 3467777 68887777522 11 4679999999 787765543 222 235566
Q ss_pred e------eEEEecCC-c-eEEEEeCCcCceeeEEeecC---cceEEEEEeecCCe-EEEEecCCCCeEEEEecCCCC
Q psy505 65 A------SLSVGTKS-G-YRLFSLNSIDTLEQIYENSQ---EDVCIVERLFSSSL-VAVVSLSSPRKLTVCHFKRGS 129 (161)
Q Consensus 65 ~------~lasgs~d-g-iriwd~~~~~~~~~~~~~~~---~~~~v~~~~fs~~~-~~~~s~~~d~~i~iWD~~~~~ 129 (161)
+ ..++++.. + |-..+.. |+.+...+.... .......++|.|++ +.++..+ ++.|..+|+++..
T Consensus 143 avD~~GnaYVt~s~~~~~I~rV~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~pv 217 (334)
T 2p9w_A 143 AQDRDGNSYVAFALGMPAIARVSAD-GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSKPY 217 (334)
T ss_dssp EECTTSCEEEEEEESSCEEEEECTT-SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSSSS
T ss_pred EECCCCCEEEeCCCCCCeEEEEeCC-CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCCCc
Confidence 6 44445554 4 3333332 222221211110 01113367889877 4444444 7889999987543
No 299
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=69.90 E-value=12 Score=32.27 Aligned_cols=115 Identities=8% Similarity=0.018 Sum_probs=54.6
Q ss_pred EeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee-------eEEEecCCc-eEEEEeCCcCceeeEE
Q psy505 19 CLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA-------SLSVGTKSG-YRLFSLNSIDTLEQIY 90 (161)
Q Consensus 19 ~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~-------~lasgs~dg-iriwd~~~~~~~~~~~ 90 (161)
.++++|++.+|..+.....+.|...++........+...-..-++|+ ++.+-+..+ |..+|+... ....+.
T Consensus 500 giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~-~~~~~~ 578 (699)
T 1n7d_A 500 AIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTIL 578 (699)
T ss_dssp CEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS-CCEEEC
T ss_pred eEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC-ceEEEE
Confidence 34556644333333321126777777754322212211112233444 333334444 888888543 222333
Q ss_pred eecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEE
Q psy505 91 ENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYS 135 (161)
Q Consensus 91 ~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~ 135 (161)
.....-..-..+++..+.++.+ ....+.|..+|..+|+.+..+.
T Consensus 579 ~~~~~~~~P~glavd~~~lywt-d~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 579 EDEKRLAHPFSLAVFEDKVFWT-DIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp CCSSSCSSCCCCEEETTEEEEE-CSTTTCEEEEETTTEEEEECCC
T ss_pred ecCCcCCCceEeEEECCEEEEE-eCCCCeEEEEEccCCCceEEee
Confidence 2111000012334455655444 3455789999988888776654
No 300
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=66.61 E-value=67 Score=28.18 Aligned_cols=131 Identities=13% Similarity=0.002 Sum_probs=65.6
Q ss_pred EeecCCCc-eEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee--------eEEEecCCc-eEEEEeCCcCceee
Q psy505 19 CLCVNSDN-CYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA--------SLSVGTKSG-YRLFSLNSIDTLEQ 88 (161)
Q Consensus 19 ~~~~~~d~-~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~--------~lasgs~dg-iriwd~~~~~~~~~ 88 (161)
.|++++.+ .+.++ -.. .+.|.+.|+........+...-...++|+ |++-.+..+ |...++.- .....
T Consensus 475 GLAvD~~~~~LY~t-D~~-~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG-~~~~~ 551 (791)
T 3m0c_C 475 GLAVDWIHSNIYWT-DSV-LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYS 551 (791)
T ss_dssp EEEEETTTTEEEEE-ETT-TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEE
T ss_pred eeeeeecCCcEEEE-ecC-CCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCC-CceEE
Confidence 45666544 33333 332 68899999985544333333334456666 333222324 77777743 33322
Q ss_pred EEeecCcceEEEEEeecC-CeEEEEecCCCCeEEEEecCCCCeEEEEEe---cCceEEEEECCcEEEEEe
Q psy505 89 IYENSQEDVCIVERLFSS-SLVAVVSLSSPRKLTVCHFKRGSEICNYSF---SNTILAVKLNRKKEEEED 154 (161)
Q Consensus 89 ~~~~~~~~~~v~~~~fs~-~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~---~~~V~~v~~~~~~~vv~~ 154 (161)
+....-. .-..+++++ ++...++....+.|...|+........+.. -....+|++..++|.++.
T Consensus 552 lv~~~l~--~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD 619 (791)
T 3m0c_C 552 LVTENIQ--WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTD 619 (791)
T ss_dssp EECSSCS--CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEE
T ss_pred EEeCCCC--CceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEEEEE
Confidence 3322111 123455552 333333444556898888864433222221 123456777666766664
No 301
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=66.32 E-value=22 Score=28.03 Aligned_cols=96 Identities=15% Similarity=0.065 Sum_probs=55.3
Q ss_pred cceEEEEEcCCCCceeeeecc-Cccceeee---------eEEEe-cCCc-eEEEEeCCcCceeeEEeecCc----ceEEE
Q psy505 37 IGEVQIFDADNLHAKTMIPAH-DSPLAALA---------SLSVG-TKSG-YRLFSLNSIDTLEQIYENSQE----DVCIV 100 (161)
Q Consensus 37 dg~v~iWd~~~~~~~~~l~~H-~~~V~~l~---------~lasg-s~dg-iriwd~~~~~~~~~~~~~~~~----~~~v~ 100 (161)
||.|.-.|..+|+.+..++.. ..++-... .++.. +.|| +-.+|.++|... +..... ...+.
T Consensus 19 dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~---~~~~~~~lv~~SP~~ 95 (339)
T 2be1_A 19 EGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQK---LPLSIRQLVSTSPLH 95 (339)
T ss_dssp TSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEE---EEEEHHHHHTTCSEE
T ss_pred CCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEE---eeeccccceeccccc
Confidence 899999999999988888754 12222211 23333 6788 988898877422 211100 00011
Q ss_pred E---Eee------cCCeEEEEecCCCCeEEEEecCCCCeEEEEEe
Q psy505 101 E---RLF------SSSLVAVVSLSSPRKLTVCHFKRGSEICNYSF 136 (161)
Q Consensus 101 ~---~~f------s~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~ 136 (161)
. ... +.++...++ +.++.+.--|.++|+.+-++..
T Consensus 96 ~~~~pvv~~~~~~~~~g~Vy~G-s~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 96 LKTNIVVNDSGKIVEDEKVYTG-SMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp EECC----------CCEEEEEC-EEEEEEEEEETTTCCEEEEEST
T ss_pred cCCCceeecccccccCCEEEEE-ecCCEEEEEECCCCcEEEEEec
Confidence 0 000 135554444 3567888889999998877753
No 302
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=65.25 E-value=2.9 Score=38.22 Aligned_cols=26 Identities=15% Similarity=0.180 Sum_probs=20.7
Q ss_pred eEEEEecCCCCeEEEEecCCCCeEEEEE
Q psy505 108 LVAVVSLSSPRKLTVCHFKRGSEICNYS 135 (161)
Q Consensus 108 ~~~~~s~~~d~~i~iWD~~~~~~i~~l~ 135 (161)
.+.+++ -|+++||||+.+++|+.+..
T Consensus 251 ~lftL~--~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 251 VLVMLS--LDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp EEEEEB--TTCEEEEEETTTTEEEEEEE
T ss_pred EEEEEe--CCCEEEEEECCCCCeEEeec
Confidence 344444 68999999999999998865
No 303
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=65.09 E-value=28 Score=27.03 Aligned_cols=54 Identities=9% Similarity=0.008 Sum_probs=36.0
Q ss_pred EEEeecCCeEEEEecCCCCeEEEEecCCCC-eEEEEE-e---cCceEEEEECCc-----EEEEEec
Q psy505 100 VERLFSSSLVAVVSLSSPRKLTVCHFKRGS-EICNYS-F---SNTILAVKLNRK-----KEEEEDE 155 (161)
Q Consensus 100 ~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~-~i~~l~-~---~~~V~~v~~~~~-----~~vv~~~ 155 (161)
..|+|.|++..+++... +.|+++| ..++ .+..+. + .....+++|+|+ .+.|+..
T Consensus 32 ~~ia~~pdG~l~V~e~~-g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~ 95 (354)
T 3a9g_A 32 WSIAPLGGGRYLVTERP-GRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYAS 95 (354)
T ss_dssp EEEEEEETTEEEEEETT-TEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEE
T ss_pred eEEEEcCCCeEEEEeCC-CEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEe
Confidence 47789999888887644 7899887 4454 222221 1 246889999997 6666653
No 304
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=64.90 E-value=9.2 Score=33.52 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=25.5
Q ss_pred eEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeec
Q psy505 17 ICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPA 56 (161)
Q Consensus 17 v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~ 56 (161)
|.++.+ +..++++-+. |.++|+||+.+++++.+..-
T Consensus 224 Is~~~~--~~~fLftL~~--Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 224 ISCKLF--HERYLIVLTQ--NCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEE--TTTEEEEEET--TCEEEEEETTTTEEEEEEET
T ss_pred EEEecc--CCcEEEEEEc--CCeEEEEEcCCCceEEeecc
Confidence 444444 3456655554 99999999999998877653
No 305
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=61.24 E-value=51 Score=25.92 Aligned_cols=48 Identities=15% Similarity=0.079 Sum_probs=34.8
Q ss_pred EEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEE-e-------cCceEEEEECCc
Q psy505 100 VERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYS-F-------SNTILAVKLNRK 148 (161)
Q Consensus 100 ~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~-~-------~~~V~~v~~~~~ 148 (161)
..|+|.|++..+++....+.|++++...++.. .+. . ....+.++|+|+
T Consensus 35 ~~ia~~pdG~llVter~~G~I~~v~~~~g~~~-~v~~~~~v~~~g~~GllGia~~Pd 90 (347)
T 3das_A 35 WGLAPLPGGDLLVSSRDEATITRVDAKTGRKT-ELGEVPGVSPSGEGGLLGIALSPD 90 (347)
T ss_dssp EEEEECTTSCEEEEETTTCEEEEECTTTCCEE-EEEECTTCCCBTTBSEEEEEECTT
T ss_pred eEEEEcCCCcEEEEEecCCEEEEEECCCCcEe-eecccCceeecCCCCceeeEeccc
Confidence 47889999988888765678999987766642 221 1 246789999984
No 306
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=56.79 E-value=63 Score=24.58 Aligned_cols=130 Identities=7% Similarity=-0.123 Sum_probs=64.0
Q ss_pred EeecCC-CceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee-------eEEEe-cCCc-eEEEEeCCcCceee
Q psy505 19 CLCVNS-DNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA-------SLSVG-TKSG-YRLFSLNSIDTLEQ 88 (161)
Q Consensus 19 ~~~~~~-d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~-------~lasg-s~dg-iriwd~~~~~~~~~ 88 (161)
.+++++ ++.+..+-.. .+.|.+.++........+...-..-++++ ++.+- ...+ |...++. |.....
T Consensus 83 glavd~~~g~ly~~d~~--~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~ 159 (318)
T 3sov_A 83 GLACDWLGEKLYWTDSE--TNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFI 159 (318)
T ss_dssp EEEEETTTTEEEEEETT--TTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-SCSCEE
T ss_pred EEEEEcCCCeEEEEECC--CCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-CCCeEE
Confidence 455554 4444444333 57899999875443333323333345555 22222 2234 7777764 222222
Q ss_pred EEeecCcceEEEEEeecC-CeEEEEecCCCCeEEEEecCCCCeEEEEEe--cCceEEEEECCcEEEEEe
Q psy505 89 IYENSQEDVCIVERLFSS-SLVAVVSLSSPRKLTVCHFKRGSEICNYSF--SNTILAVKLNRKKEEEED 154 (161)
Q Consensus 89 ~~~~~~~~~~v~~~~fs~-~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~--~~~V~~v~~~~~~~vv~~ 154 (161)
+....-. .-..+++++ ++...++....+.|..+|..... ...+.. -....++++..+++.+..
T Consensus 160 ~~~~~l~--~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~P~glav~~~~lywtd 225 (318)
T 3sov_A 160 IINSEIY--WPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN-RQAVVKGSLPHPFALTLFEDILYWTD 225 (318)
T ss_dssp EECSSCS--CEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSCCSCEEEEEEETTEEEEEE
T ss_pred EEECCCC--CccEEEEeccCCEEEEEECCCCEEEEEcCCCCc-eEEEecCCCCCceEEEEeCCEEEEEe
Confidence 2221111 124677876 44444555566789999986332 222221 234455666555555553
No 307
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=56.16 E-value=28 Score=29.31 Aligned_cols=63 Identities=11% Similarity=0.187 Sum_probs=37.5
Q ss_pred eecCCCceEEEEcCCCCcceEEEEEcCCCCcee--eeeccCc--cceee-e--eEEEec-CC-----c-eEEEEeCCc
Q psy505 20 LCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKT--MIPAHDS--PLAAL-A--SLSVGT-KS-----G-YRLFSLNSI 83 (161)
Q Consensus 20 ~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~--~l~~H~~--~V~~l-~--~lasgs-~d-----g-iriwd~~~~ 83 (161)
.++.++|.+++.+|.. ++.+.+||+.+++-.. .+..... ....+ . +++.|+ .+ . +.+||..+.
T Consensus 248 ~~~~~~g~lyv~GG~~-~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 248 ISMDGNGQIVVTGGND-AKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp EEECTTSCEEEECSSS-TTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred ccCCCCCCEEEeCCCC-CCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence 3445688999998863 6789999998765322 1211111 11112 1 556666 33 3 899998764
No 308
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=55.29 E-value=64 Score=24.24 Aligned_cols=130 Identities=12% Similarity=-0.003 Sum_probs=65.5
Q ss_pred EeecCC-CceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee-------eEEEecCC-c-eEEEEeCCcCceee
Q psy505 19 CLCVNS-DNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA-------SLSVGTKS-G-YRLFSLNSIDTLEQ 88 (161)
Q Consensus 19 ~~~~~~-d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~-------~lasgs~d-g-iriwd~~~~~~~~~ 88 (161)
.+++++ ++.+.++-.. .+.|.+.|+........+...-...++++ ++.+.... + |...++. |.....
T Consensus 81 glavd~~~~~ly~~d~~--~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~ 157 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSV--LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYS 157 (316)
T ss_dssp EEEEETTTTEEEEEETT--TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEE
T ss_pred EEEEeecCCeEEEEECC--CCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEE
Confidence 455554 3444343233 68899999875444333332223345555 33333332 4 7777763 332222
Q ss_pred EEeecCcceEEEEEeecC-CeEEEEecCCCCeEEEEecCCCCeEEEE-Ee---cCceEEEEECCcEEEEEe
Q psy505 89 IYENSQEDVCIVERLFSS-SLVAVVSLSSPRKLTVCHFKRGSEICNY-SF---SNTILAVKLNRKKEEEED 154 (161)
Q Consensus 89 ~~~~~~~~~~v~~~~fs~-~~~~~~s~~~d~~i~iWD~~~~~~i~~l-~~---~~~V~~v~~~~~~~vv~~ 154 (161)
+....-. .-..+++++ ++...++....+.|..+|..... ...+ .. -....++++..+++.++.
T Consensus 158 ~~~~~~~--~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~~~~ly~~d 225 (316)
T 1ijq_A 158 LVTENIQ--WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFEDKVFWTD 225 (316)
T ss_dssp EECSSCS--CEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEETTEEEEEE
T ss_pred EEECCCC--CceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEECCEEEEEE
Confidence 2211111 234677775 34444444556789999987432 3333 21 133556666666666654
No 309
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=48.80 E-value=47 Score=31.83 Aligned_cols=107 Identities=10% Similarity=0.116 Sum_probs=67.2
Q ss_pred EeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccce----eeeeEEEecCCceEEEEeCCc-CceeeEEeec
Q psy505 19 CLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLA----ALASLSVGTKSGYRLFSLNSI-DTLEQIYENS 93 (161)
Q Consensus 19 ~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~----~l~~lasgs~dgiriwd~~~~-~~~~~~~~~~ 93 (161)
+...||..+.+|.-+ ..++.|+|+.+++.++.++-.+..|- +-..|+--++..|--|++... .|. +.+..|
T Consensus 70 sAIMnP~~~iiALra---g~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lVT~~aVyHW~~~~~s~P~-k~fdR~ 145 (1630)
T 1xi4_A 70 SAIMNPASKVIALKA---GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPV-KMFDRH 145 (1630)
T ss_pred hhccCCCcceEEEec---CCeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEEcCCeEEEeccCCCCccH-HHHhcc
Confidence 333488888888864 47899999999887777665443221 111667677777999999532 333 455555
Q ss_pred C--cceEEEEEeecCCeEEEE--e-----cCCCCeEEEEecCCCC
Q psy505 94 Q--EDVCIVERLFSSSLVAVV--S-----LSSPRKLTVCHFKRGS 129 (161)
Q Consensus 94 ~--~~~~v~~~~fs~~~~~~~--s-----~~~d~~i~iWD~~~~~ 129 (161)
. ....|+...-+++..+++ + +.-.+.+.+|.++++.
T Consensus 146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~ 190 (1630)
T 1xi4_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV 190 (1630)
T ss_pred hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc
Confidence 3 234566655566655543 1 1234578999988764
No 310
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=47.81 E-value=67 Score=25.96 Aligned_cols=55 Identities=11% Similarity=0.056 Sum_probs=36.6
Q ss_pred EEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEEec---------CceEEEEECCc-----EEEEEe
Q psy505 100 VERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYSFS---------NTILAVKLNRK-----KEEEED 154 (161)
Q Consensus 100 ~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~~---------~~V~~v~~~~~-----~~vv~~ 154 (161)
..|+|.|++..+++....+.|++++...++.-....+. ...+.++|+|+ .+.+..
T Consensus 30 ~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~ 98 (454)
T 1cru_A 30 HALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG 98 (454)
T ss_dssp EEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred eEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence 47899999988888654457888887666542222222 35679999983 555554
No 311
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=46.35 E-value=1.4e+02 Score=25.38 Aligned_cols=108 Identities=10% Similarity=0.008 Sum_probs=57.7
Q ss_pred eeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeec---cCccceeee-----eEEEecCCceEEEEeCCcCcee
Q psy505 16 GICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPA---HDSPLAALA-----SLSVGTKSGYRLFSLNSIDTLE 87 (161)
Q Consensus 16 ~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~---H~~~V~~l~-----~lasgs~dgiriwd~~~~~~~~ 87 (161)
.|.++..+++|.+.+.++. .+-+..+|..+++....... ....+.++. .|-.|+.+|+..||..++. +.
T Consensus 473 ~i~~i~~d~~g~lWi~~~t--~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt~~Gl~~~~~~~~~-~~ 549 (758)
T 3ott_A 473 FINQIIPDNEGNVWVLLYN--NKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGFHGGVMRINPKDES-QQ 549 (758)
T ss_dssp CEEEEEECTTSCEEEEETT--CSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEETTEEEEECC--CC-CC
T ss_pred eeeeEEEcCCCCEEEEccC--CCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEecCceEEEecCCCc-eE
Confidence 4788888888887763333 23477789887654332110 123455555 3334556788888876653 21
Q ss_pred eEE-eecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCe
Q psy505 88 QIY-ENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSE 130 (161)
Q Consensus 88 ~~~-~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~ 130 (161)
.+. .+-. ...+.++......+++.+ .+.|..+|.++.+.
T Consensus 550 ~~~~~gl~-~~~i~~i~~~~g~lWi~t---~~Gl~~~~~~~~~~ 589 (758)
T 3ott_A 550 SISFGSFS-NNEILSMTCVKNSIWVST---TNGLWIIDRKTMDA 589 (758)
T ss_dssp BCCCCC----CCEEEEEEETTEEEEEE---SSCEEEEETTTCCE
T ss_pred EecccCCC-ccceEEEEECCCCEEEEC---CCCeEEEcCCCcee
Confidence 111 1111 112455555544455554 24588889887764
No 312
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=42.68 E-value=1.2e+02 Score=23.73 Aligned_cols=133 Identities=12% Similarity=0.002 Sum_probs=67.3
Q ss_pred eeEEeecCC-CceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee-------eEEEe-cCCc-eEEEEeCCcCc
Q psy505 16 GICCLCVNS-DNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA-------SLSVG-TKSG-YRLFSLNSIDT 85 (161)
Q Consensus 16 ~v~~~~~~~-d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~-------~lasg-s~dg-iriwd~~~~~~ 85 (161)
....+++++ ++.+..+-.. .+.|.+.|+........+...-...++++ ++.+- ...+ |...++.- ..
T Consensus 160 ~p~glavD~~~~~lY~~d~~--~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG-~~ 236 (400)
T 3p5b_L 160 APDGLAVDWIHSNIYWTDSV--LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VD 236 (400)
T ss_dssp CEEEEEEETTTTEEEEEETT--TTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTS-CS
T ss_pred CcccEEEEecCCceEEEECC--CCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCC-Cc
Confidence 345666665 4444444333 67899999886554444443333345555 22222 2234 77777753 22
Q ss_pred eeeEEeecCcceEEEEEeecC-CeEEEEecCCCCeEEEEecCCCCeEEEE-Ee---cCceEEEEECCcEEEEEe
Q psy505 86 LEQIYENSQEDVCIVERLFSS-SLVAVVSLSSPRKLTVCHFKRGSEICNY-SF---SNTILAVKLNRKKEEEED 154 (161)
Q Consensus 86 ~~~~~~~~~~~~~v~~~~fs~-~~~~~~s~~~d~~i~iWD~~~~~~i~~l-~~---~~~V~~v~~~~~~~vv~~ 154 (161)
...+....-. .-..+++++ ++...++....+.|...|+..+. ...+ .. -....++++..+++.++.
T Consensus 237 ~~~~~~~~l~--~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~l~~P~gl~v~~~~lywtd 307 (400)
T 3p5b_L 237 IYSLVTENIQ--WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFEDKVFWTD 307 (400)
T ss_dssp CEEEECSSCS--CEEEEEEETTTTEEEEEETTTTEEEEEETTSCC-CEEEEECSSTTSSEEEEEEETTEEEEEE
T ss_pred cEEEEECCCC--ceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCc-cEEEEeCCCCCCCCEEEEEeCCEEEEec
Confidence 2223221111 234566774 33444444456789999986433 2232 21 133456666556655553
No 313
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=42.46 E-value=1e+02 Score=22.91 Aligned_cols=99 Identities=15% Similarity=0.079 Sum_probs=57.3
Q ss_pred eeccCccceeee-------eEEEecCCc-eEEEEeCCcCceeeEE-eecCcceEEEEEeecCCeEEEEecCCCCeEEEEe
Q psy505 54 IPAHDSPLAALA-------SLSVGTKSG-YRLFSLNSIDTLEQIY-ENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCH 124 (161)
Q Consensus 54 l~~H~~~V~~l~-------~lasgs~dg-iriwd~~~~~~~~~~~-~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD 124 (161)
+.+=.+.+++++ ++++...++ |-..|.. |+.+..+. .|.. + ...+++.+++.+.++.-.++.+.+++
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~-D--~EGIa~~~~g~~~vs~E~~~~l~~~~ 97 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVK-D--LETIEYIGDNQFVISDERDYAIYVIS 97 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCS-S--EEEEEECSTTEEEEEETTTTEEEEEE
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCC-C--hHHeEEeCCCEEEEEECCCCcEEEEE
Confidence 333334566666 455555566 7777886 66443331 2222 2 34566777776655544567899998
Q ss_pred cCCCCe---EEEEEec-------CceEEEEECCc--EEEEEecc
Q psy505 125 FKRGSE---ICNYSFS-------NTILAVKLNRK--KEEEEDEE 156 (161)
Q Consensus 125 ~~~~~~---i~~l~~~-------~~V~~v~~~~~--~~vv~~~~ 156 (161)
+..... +....++ ...-+++++|+ ++.++-+.
T Consensus 98 v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~ 141 (255)
T 3qqz_A 98 LTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEK 141 (255)
T ss_dssp ECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEES
T ss_pred cCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECc
Confidence 766543 2333321 23478999886 67776654
No 314
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=41.59 E-value=28 Score=33.27 Aligned_cols=78 Identities=10% Similarity=0.069 Sum_probs=51.8
Q ss_pred eEEEEeCCcCceeeEEeecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCCCeEEEEEecCceEEEEE-CCcEEEEE
Q psy505 75 YRLFSLNSIDTLEQIYENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRGSEICNYSFSNTILAVKL-NRKKEEEE 153 (161)
Q Consensus 75 iriwd~~~~~~~~~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~~~~V~~v~~-~~~~~vv~ 153 (161)
+-|-|+.++... .++.-... ..-|..+.+.+++=+ .++++|+|+++.+.+.++.++.+|.-=+| |++.+++|
T Consensus 50 vvIidl~~~~~~--~rrpi~Ad--sAIMnP~~~iiALra---g~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lV 122 (1630)
T 1xi4_A 50 VVIIDMNDPSNP--IRRPISAD--SAIMNPASKVIALKA---GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALV 122 (1630)
T ss_pred EEEEECCCCCCc--ccccccch--hhccCCCcceEEEec---CCeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEE
Confidence 667777665432 22221111 112445555555554 35899999999998999888766655555 99999999
Q ss_pred ecccee
Q psy505 154 DEEEEK 159 (161)
Q Consensus 154 ~~~~~~ 159 (161)
++..++
T Consensus 123 T~~aVy 128 (1630)
T 1xi4_A 123 TDNAVY 128 (1630)
T ss_pred cCCeEE
Confidence 999876
No 315
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=38.22 E-value=1.8e+02 Score=24.51 Aligned_cols=135 Identities=4% Similarity=-0.050 Sum_probs=72.9
Q ss_pred eeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee-------eEEEecCCc-eEEEEeCCcCcee
Q psy505 16 GICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA-------SLSVGTKSG-YRLFSLNSIDTLE 87 (161)
Q Consensus 16 ~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~-------~lasgs~dg-iriwd~~~~~~~~ 87 (161)
...++++++++..|-.+... ++.|+.+++........+..--....+++ ++.+-+..+ |.+.++.... ..
T Consensus 38 ~~~~l~~d~~~~~lywtD~~-~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~-~~ 115 (628)
T 4a0p_A 38 EASALDFDVTDNRIYWTDIS-LKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH-RQ 115 (628)
T ss_dssp CEEEEEEETTTTEEEEEETT-TTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT-CE
T ss_pred ceEEEEEECCCCEEEEEECC-CCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc-EE
Confidence 46688888754444333332 78999999876544444433223455666 344444555 8888885432 22
Q ss_pred eEEeecCcceEEEEEeecC-CeEEEEec-CCCCeEEEEecCCCCeEEEE-EecCceEEEEECC--cEEEEEec
Q psy505 88 QIYENSQEDVCIVERLFSS-SLVAVVSL-SSPRKLTVCHFKRGSEICNY-SFSNTILAVKLNR--KKEEEEDE 155 (161)
Q Consensus 88 ~~~~~~~~~~~v~~~~fs~-~~~~~~s~-~~d~~i~iWD~~~~~~i~~l-~~~~~V~~v~~~~--~~~vv~~~ 155 (161)
.+....-.. -..+++.| ++....+. +....|...+..-.. ...+ .--....++++++ .+|.++..
T Consensus 116 ~l~~~~l~~--P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~~l~~~~~~P~GlalD~~~~~LY~aD~ 185 (628)
T 4a0p_A 116 VLVWKDLDS--PRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RTTLVPNVGRANGLTIDYAKRRLYWTDL 185 (628)
T ss_dssp EEECSSCCC--EEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEECSCSSEEEEEEETTTTEEEEEET
T ss_pred EEEeCCCCC--cccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-eEEEECCCCCcceEEEccccCEEEEEEC
Confidence 233221111 24667776 45545543 224567777765433 2222 2224567788876 36666653
No 316
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=38.04 E-value=1.7e+02 Score=24.16 Aligned_cols=108 Identities=11% Similarity=0.090 Sum_probs=57.9
Q ss_pred ceeEEeec-------CCCceEEEEcCCCCcc------eEEEEEcCC-CCce-----eeeeccCccceeee-------eEE
Q psy505 15 NGICCLCV-------NSDNCYLAYPGSNSIG------EVQIFDADN-LHAK-----TMIPAHDSPLAALA-------SLS 68 (161)
Q Consensus 15 ~~v~~~~~-------~~d~~~la~~g~~~dg------~v~iWd~~~-~~~~-----~~l~~H~~~V~~l~-------~la 68 (161)
.+...+++ +++|.+|.++... ++ .|.+.+... +... ..+..-.. ..+++ +++
T Consensus 186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~-~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~-p~giavdp~~g~LYv 263 (496)
T 3kya_A 186 NRIRSIAFNKKIEGYADEAEYMIVAIDY-DGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQ-CNGATIHPINGELYF 263 (496)
T ss_dssp SBEEEEEECCCBTTTBCTTCEEEEEECC-CTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESC-CCCEEECTTTCCEEE
T ss_pred CCCcEEEEeecccccCCCCCEEEEEeCC-CCCcccCceEEEEecCCCCceeecccceeeccCCC-ceEEEEcCCCCeEEE
Confidence 35778888 8888755554432 31 266666443 2221 22221111 22333 555
Q ss_pred EecCCc-eEEEEeC-------CcCc-----------eeeEEeecCcceEEEEEeecCCeE-EEEecCCCCeEEEEec
Q psy505 69 VGTKSG-YRLFSLN-------SIDT-----------LEQIYENSQEDVCIVERLFSSSLV-AVVSLSSPRKLTVCHF 125 (161)
Q Consensus 69 sgs~dg-iriwd~~-------~~~~-----------~~~~~~~~~~~~~v~~~~fs~~~~-~~~s~~~d~~i~iWD~ 125 (161)
+-..++ |..+|+. ++.. +.+++.-.. ...-..++|+|++. ..++....+.|+.+|.
T Consensus 264 td~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~-~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 264 NSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIAD-PSWEFQIFIHPTGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp EETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSS-SSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred EECCCCEEEEEecccccccccCceeecccccccccccceeEecCC-CCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence 666677 9999987 5542 222332211 11224678999875 4555556678998654
No 317
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=37.68 E-value=1.5e+02 Score=23.27 Aligned_cols=135 Identities=8% Similarity=-0.019 Sum_probs=66.5
Q ss_pred eeEEeecCCCceEEEEcC-----------CCCcceEEEEEcCCC--Cce-eeeec--------cCcccee-------eee
Q psy505 16 GICCLCVNSDNCYLAYPG-----------SNSIGEVQIFDADNL--HAK-TMIPA--------HDSPLAA-------LAS 66 (161)
Q Consensus 16 ~v~~~~~~~d~~~la~~g-----------~~~dg~v~iWd~~~~--~~~-~~l~~--------H~~~V~~-------l~~ 66 (161)
|.-.++..|+|..+++++ .. +|.|.++|+.+. +.. -.+.+ |...+.- +.+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~-~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDK-SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC------------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCC-CCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 445566678887777653 22 899999999843 211 12222 1111111 113
Q ss_pred EEEecC--Cc-eEEEEeCCcCceeeEE---eecCcceEEEEEeecCCeEEEEecC-----------------CCCeEEEE
Q psy505 67 LSVGTK--SG-YRLFSLNSIDTLEQIY---ENSQEDVCIVERLFSSSLVAVVSLS-----------------SPRKLTVC 123 (161)
Q Consensus 67 lasgs~--dg-iriwd~~~~~~~~~~~---~~~~~~~~v~~~~fs~~~~~~~s~~-----------------~d~~i~iW 123 (161)
+++-.. +. |.||++..+....... .+.. -.....+...+++...++.. ..+.|.-+
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~-~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~ 208 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKL-LPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY 208 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTT-CSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEE
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCC-CCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEE
Confidence 333333 33 8888876543221222 2211 11244566666665555432 11345445
Q ss_pred ecCCCCeEEEEEecCceEEEEECCc--EEEEEe
Q psy505 124 HFKRGSEICNYSFSNTILAVKLNRK--KEEEED 154 (161)
Q Consensus 124 D~~~~~~i~~l~~~~~V~~v~~~~~--~~vv~~ 154 (161)
|. +++-.....-..-++++|+|| .+.++.
T Consensus 209 d~--~~~~~~~~~l~~pNGia~spDg~~lYvad 239 (355)
T 3sre_A 209 SP--NDVRVVAEGFDFANGINISPDGKYVYIAE 239 (355)
T ss_dssp CT--TCCEEEEEEESSEEEEEECTTSSEEEEEE
T ss_pred EC--CeEEEeecCCcccCcceECCCCCEEEEEe
Confidence 54 332222223356788999998 355554
No 318
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=37.31 E-value=1.9e+02 Score=24.46 Aligned_cols=107 Identities=13% Similarity=0.122 Sum_probs=58.1
Q ss_pred eeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee----eEEEecCCceEEEEeCCcCceeeEEe
Q psy505 16 GICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA----SLSVGTKSGYRLFSLNSIDTLEQIYE 91 (161)
Q Consensus 16 ~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~----~lasgs~dgiriwd~~~~~~~~~~~~ 91 (161)
.|.++..+++|.+.+.+. +| +..+|..+.+...........|+++. .|-.|+.+|+..||..+++ +..+..
T Consensus 64 ~i~~i~~d~~g~lWigT~---~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~~~g~lWigt~~Gl~~~~~~~~~-~~~~~~ 138 (758)
T 3ott_A 64 RIYCGVIIDNTYLYMGTD---NG-ILVYNYRADRYEQPETDFPTDVRTMALQGDTLWLGALNGLYTYQLQSRK-LTSFDT 138 (758)
T ss_dssp CEEEEEEETTTEEEEEET---TE-EEEEETTTTEECCCSCCCCSCEEEEEEETTEEEEEETTEEEEEETTTCC-EEEECH
T ss_pred eEEEEEEcCCCcEEEEeC---CC-eEEEeCCCCEEECcccCCCceEEEEEecCCcEEEEcCCcceeEeCCCCe-EEEecc
Confidence 477777777776665432 44 77889887643221111223465554 3444556688888987643 322211
Q ss_pred e--cCcceEEEEEeecCCe-EEEEecCCCCeEEEEecCCCCe
Q psy505 92 N--SQEDVCIVERLFSSSL-VAVVSLSSPRKLTVCHFKRGSE 130 (161)
Q Consensus 92 ~--~~~~~~v~~~~fs~~~-~~~~s~~~d~~i~iWD~~~~~~ 130 (161)
. ......+.++...+++ +++++ ++.|..+|..+++.
T Consensus 139 ~~~~l~~~~i~~i~~d~~g~lWigt---~~Gl~~~~~~~~~~ 177 (758)
T 3ott_A 139 RRNGLPNNTIYSIIRTKDNQIYVGT---YNGLCRYIPSNGKF 177 (758)
T ss_dssp HHHCCSCSCEEEEEECTTCCEEEEE---TTEEEEEETTTTEE
T ss_pred CCCCcCCCeEEEEEEcCCCCEEEEe---CCCHhhCccCCCce
Confidence 0 0011235666666544 44443 24688889877653
No 319
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=36.65 E-value=1.6e+02 Score=25.42 Aligned_cols=88 Identities=16% Similarity=0.181 Sum_probs=52.0
Q ss_pred CCCCceeEEeecCCCceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeeeeEEEecCCceEEEEeCCcCceeeEE
Q psy505 11 PPNPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALASLSVGTKSGYRLFSLNSIDTLEQIY 90 (161)
Q Consensus 11 ~~~~~~v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~~lasgs~dgiriwd~~~~~~~~~~~ 90 (161)
+-+|-|+. .+|||++++.+|-- +.+|-+.|++... .-|.+. + -+.+. ....+.-
T Consensus 322 pksPHGv~---vsPDGkyi~v~GKL-sptvtV~d~~k~~--~~~~~k---~----------------~~~~~-~~~ae~e 375 (638)
T 3sbq_A 322 PKNPHGCN---TSSDGKYFIAAGKL-SPTCSMIAIDKLP--DLFAGK---L----------------ADPRD-VIVGEPE 375 (638)
T ss_dssp SSSCCCEE---ECTTSCEEEEECTT-SSBEEEEEGGGHH--HHHTTC---C----------------SCGGG-GEEECCB
T ss_pred CCCCccee---eCCCCCEEEEcCCC-CCeEEEEEeehhh--hhhhcc---c----------------cCccc-ceEeecc
Confidence 34454553 37899999998885 8999999987421 112111 0 00000 0000111
Q ss_pred eecCcceEEEEEeecCCeEEEEecCCCCeEEEEecCCC
Q psy505 91 ENSQEDVCIVERLFSSSLVAVVSLSSPRKLTVCHFKRG 128 (161)
Q Consensus 91 ~~~~~~~~v~~~~fs~~~~~~~s~~~d~~i~iWD~~~~ 128 (161)
-|-. -...+|.+++.+..+..-|..|.-||+...
T Consensus 376 ~GlG----PlHt~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 376 LGLG----PLHTTFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp CCSC----EEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred CCCc----ccEEEECCCCceEeeeeecceEEEEeccHH
Confidence 1211 234569999988888888889999998764
No 320
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=35.65 E-value=2.6e+02 Score=25.64 Aligned_cols=95 Identities=7% Similarity=0.094 Sum_probs=54.5
Q ss_pred ceEEEEEcCCCCceeeeeccC-ccceeee----eEEEecCCc-eEEEEeCCcCceeeEEeec-CcceEEEEEeecC----
Q psy505 38 GEVQIFDADNLHAKTMIPAHD-SPLAALA----SLSVGTKSG-YRLFSLNSIDTLEQIYENS-QEDVCIVERLFSS---- 106 (161)
Q Consensus 38 g~v~iWd~~~~~~~~~l~~H~-~~V~~l~----~lasgs~dg-iriwd~~~~~~~~~~~~~~-~~~~~v~~~~fs~---- 106 (161)
..||+.+...+..+..+.... ..|...+ +++.++ ++ +-++++..++ +.+..+-. .+. +.++++.|
T Consensus 492 ~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~~~vvva~-g~~l~~fel~~~~-L~~~~~~~l~~e--vscl~i~~~~~~ 567 (1158)
T 3ei3_A 492 ASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVVAV-GRALYYLQIHPQE-LRQISHTEMEHE--VACLDITPLGDS 567 (1158)
T ss_dssp SCEEEEESSSCCEEEEECCTTCCCCCEEEECSSEEEEEE-TTEEEEEEEETTE-EEEEEEEECSSC--EEEEECCCCSSS
T ss_pred CEEEEEECCCCeEEEEEECCCCCEEEEEEeCCCEEEEEE-CCEEEEEEeeCCc-eeeecccCCCCc--eEEEEeecCCCC
Confidence 457777776655666665432 2454444 555554 45 7778887653 33322211 123 55666653
Q ss_pred ---CeEEEEecCCCCeEEEEecCCCCeEEEEEe
Q psy505 107 ---SLVAVVSLSSPRKLTVCHFKRGSEICNYSF 136 (161)
Q Consensus 107 ---~~~~~~s~~~d~~i~iWD~~~~~~i~~l~~ 136 (161)
..+..++...|++|+|+++..-+.+.....
T Consensus 568 ~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L 600 (1158)
T 3ei3_A 568 NGLSPLCAIGLWTDISARILKLPSFELLHKEML 600 (1158)
T ss_dssp TTCCSEEEEEETTTTEEEEEETTTCCEEEEEEC
T ss_pred cccccEEEEEECCCCEEEEEECCCCCeEEEEEC
Confidence 234555554589999999987776655443
No 321
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=32.66 E-value=1.4e+02 Score=21.65 Aligned_cols=103 Identities=11% Similarity=0.058 Sum_probs=48.8
Q ss_pred CceEEEEcCCCC-----cceEEEEEcCCCCce--eeeeccCccceeee----eEEEecCC-----c-eEEEEeCCcCcee
Q psy505 25 DNCYLAYPGSNS-----IGEVQIFDADNLHAK--TMIPAHDSPLAALA----SLSVGTKS-----G-YRLFSLNSIDTLE 87 (161)
Q Consensus 25 d~~~la~~g~~~-----dg~v~iWd~~~~~~~--~~l~~H~~~V~~l~----~lasgs~d-----g-iriwd~~~~~~~~ 87 (161)
++.+.+.+|... -..+.++|+.+.+-. ..+......-..+. +++.|+.+ . +.+||.++.+ -.
T Consensus 155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~ 233 (302)
T 2xn4_A 155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNA-WR 233 (302)
T ss_dssp TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTE-EE
T ss_pred CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCC-Ee
Confidence 567777766410 134889999876421 11211111111111 55566543 2 7889987642 11
Q ss_pred eEEeecCcceEEEEEeecCCeEEEEecCCC----CeEEEEecCCCC
Q psy505 88 QIYENSQEDVCIVERLFSSSLVAVVSLSSP----RKLTVCHFKRGS 129 (161)
Q Consensus 88 ~~~~~~~~~~~v~~~~fs~~~~~~~s~~~d----~~i~iWD~~~~~ 129 (161)
.+-...... .-..++...+.+++.+|... +.+.+||+++++
T Consensus 234 ~~~~~~~~r-~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 234 QVADMNMCR-RNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp EECCCSSCC-BSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred eCCCCCCcc-ccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 111000000 00112223456666665322 358999998765
No 322
>3pg0_A Threefoil; symmetric design, beta-trefoil, engineered module, sugar BIN NOVO protein; HET: BTB GOL; 1.62A {Artificial gene}
Probab=32.58 E-value=1.1e+02 Score=20.44 Aligned_cols=8 Identities=13% Similarity=0.164 Sum_probs=4.2
Q ss_pred EEEEEcCC
Q psy505 40 VQIFDADN 47 (161)
Q Consensus 40 v~iWd~~~ 47 (161)
|.+|+...
T Consensus 53 v~~~~c~~ 60 (165)
T 3pg0_A 53 VIQYSYSG 60 (165)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 55555443
No 323
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=32.04 E-value=1.2e+02 Score=23.71 Aligned_cols=63 Identities=8% Similarity=0.010 Sum_probs=36.0
Q ss_pred eEEEecCCc-eEEEEeCCcCceeeEEeecCc-ceEEEEEe-e--cCC-eEEEEecCCCCeEEEEecCCCCeE
Q psy505 66 SLSVGTKSG-YRLFSLNSIDTLEQIYENSQE-DVCIVERL-F--SSS-LVAVVSLSSPRKLTVCHFKRGSEI 131 (161)
Q Consensus 66 ~lasgs~dg-iriwd~~~~~~~~~~~~~~~~-~~~v~~~~-f--s~~-~~~~~s~~~d~~i~iWD~~~~~~i 131 (161)
++..++.|| +.-.|.++|+.. ++.... ........ . ..+ ..+++..+.|+.|..+|.++|...
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~---W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~ 80 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHII---WSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQK 80 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEE---EEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEE
T ss_pred EEEEEeCCCeEEEEECCCCcEE---EEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEE
Confidence 577888999 899999888743 322221 00111111 0 012 333343256889999999888544
No 324
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=31.84 E-value=1.8e+02 Score=22.71 Aligned_cols=37 Identities=5% Similarity=0.122 Sum_probs=23.6
Q ss_pred CCeEEEEecC---CCCeEEEEEec--------------CceEEEEECCcEEEEE
Q psy505 117 PRKLTVCHFK---RGSEICNYSFS--------------NTILAVKLNRKKEEEE 153 (161)
Q Consensus 117 d~~i~iWD~~---~~~~i~~l~~~--------------~~V~~v~~~~~~~vv~ 153 (161)
++.|..+|+. +++.+.....+ .....++..+++.+-|
T Consensus 99 ~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYV 152 (334)
T 2p9w_A 99 ASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYV 152 (334)
T ss_dssp CCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEE
T ss_pred CCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEE
Confidence 5678889988 77766544321 1366777777754444
No 325
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=28.90 E-value=2.2e+02 Score=22.63 Aligned_cols=73 Identities=10% Similarity=0.067 Sum_probs=44.1
Q ss_pred eEEEEeCCc--CceeeEEeecC----cceEEEEEeec---C-----CeEEEEecCCCCeEEEEecCCCCeEEEEE-----
Q psy505 75 YRLFSLNSI--DTLEQIYENSQ----EDVCIVERLFS---S-----SLVAVVSLSSPRKLTVCHFKRGSEICNYS----- 135 (161)
Q Consensus 75 iriwd~~~~--~~~~~~~~~~~----~~~~v~~~~fs---~-----~~~~~~s~~~d~~i~iWD~~~~~~i~~l~----- 135 (161)
+-+||+.++ +.+ +.+.-.. .......+.+. | ++.+-++.+....|.|+|+++++.-..+.
T Consensus 125 Lv~~DL~t~~~~li-~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 125 IVAYDLKQPNYPEV-VRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEESSSTTCCEE-EEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred EEEEECCCCCceeE-EEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 667888886 544 3333211 11234444444 2 57777777677899999999987543331
Q ss_pred --------------ecCceEEEEECCc
Q psy505 136 --------------FSNTILAVKLNRK 148 (161)
Q Consensus 136 --------------~~~~V~~v~~~~~ 148 (161)
+...|.+++++|+
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~ 230 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDR 230 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCC
T ss_pred ccCcceEECCEEeEeccCceEEEecCC
Confidence 1246777777775
No 326
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=27.95 E-value=1.7e+02 Score=21.12 Aligned_cols=103 Identities=8% Similarity=0.062 Sum_probs=49.6
Q ss_pred CceEEEEcCCCC---cceEEEEEcCCCCcee--eeeccCccceeee----eEEEecCC-----c-eEEEEeCCcCceeeE
Q psy505 25 DNCYLAYPGSNS---IGEVQIFDADNLHAKT--MIPAHDSPLAALA----SLSVGTKS-----G-YRLFSLNSIDTLEQI 89 (161)
Q Consensus 25 d~~~la~~g~~~---dg~v~iWd~~~~~~~~--~l~~H~~~V~~l~----~lasgs~d-----g-iriwd~~~~~~~~~~ 89 (161)
++.+++.+|... -..+..+|+.+.+-.. .+......-.++. +++.|+.+ . +.+||+++.+ -.++
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~-W~~~ 237 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDS-WTTV 237 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE-EEEE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCc-EEEC
Confidence 667777766410 1458899998764221 1111111111111 55556543 2 8899987643 1111
Q ss_pred EeecCcceEEEEEeecCCeEEEEecCCC----CeEEEEecCCCC
Q psy505 90 YENSQEDVCIVERLFSSSLVAVVSLSSP----RKLTVCHFKRGS 129 (161)
Q Consensus 90 ~~~~~~~~~v~~~~fs~~~~~~~s~~~d----~~i~iWD~~~~~ 129 (161)
-......... .+..-.+.+++.+|..+ +.+.+||+++++
T Consensus 238 ~~~p~~r~~~-~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 238 TSMTTPRCYV-GATVLRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp CCCSSCCBSC-EEEEETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred CCCCCcccce-eEEEECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 1100000001 11222455666665332 468899998765
No 327
>3u12_A USP37 protein; structural genomics, PH-domain, hydrolase, structural genomi consortium, SGC; 2.08A {Homo sapiens}
Probab=27.41 E-value=1.5e+02 Score=20.28 Aligned_cols=32 Identities=16% Similarity=0.167 Sum_probs=19.3
Q ss_pred cCCCCeEEEEEecCceEEEEECCc-----EEEEEecc
Q psy505 125 FKRGSEICNYSFSNTILAVKLNRK-----KEEEEDEE 156 (161)
Q Consensus 125 ~~~~~~i~~l~~~~~V~~v~~~~~-----~~vv~~~~ 156 (161)
+.+|+....|...+.|.+|.+++. +|-+-++|
T Consensus 58 F~~G~~~ktFQL~nNIksVvlr~~g~~qn~LhLTlkn 94 (141)
T 3u12_A 58 YNTGGIPRIFQLSHNIKNVVLRPSGAKQSRLMLTLQD 94 (141)
T ss_dssp ETTCSCCEEEECTTTEEEEEEEECSTTEEEEEEEETT
T ss_pred EeCCCccEEEEcccceeeEEEecCCCccceEEEEEec
Confidence 445665556666677777766554 55555554
No 328
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=26.10 E-value=2.9e+02 Score=23.19 Aligned_cols=129 Identities=6% Similarity=-0.109 Sum_probs=63.3
Q ss_pred EeecCCC-ceEEEEcCCCCcceEEEEEcCCCCceeeeeccCccceeee--------eEEEecCCc-eEEEEeCCcCceee
Q psy505 19 CLCVNSD-NCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA--------SLSVGTKSG-YRLFSLNSIDTLEQ 88 (161)
Q Consensus 19 ~~~~~~d-~~~la~~g~~~dg~v~iWd~~~~~~~~~l~~H~~~V~~l~--------~lasgs~dg-iriwd~~~~~~~~~ 88 (161)
.+|+++. +.+..+-.. .+.|.+.|+........+...-..-++++ |++--+..+ |...++.-.. ...
T Consensus 84 GlAvD~~~~~LY~tD~~--~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~~ 160 (628)
T 4a0p_A 84 GMAVDWLGKNLYWADTG--TNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RTT 160 (628)
T ss_dssp EEEEETTTTEEEEEETT--TTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEE
T ss_pred eEEEEeCCCEEEEEECC--CCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-eEE
Confidence 4455543 333343232 67899999875443222322223345555 222212233 6666664322 222
Q ss_pred EEeecCcceEEEEEeecC-CeEEEEecCCCCeEEEEecCCCCeEEEEE-ecCceEEEEECCcEEEEEe
Q psy505 89 IYENSQEDVCIVERLFSS-SLVAVVSLSSPRKLTVCHFKRGSEICNYS-FSNTILAVKLNRKKEEEED 154 (161)
Q Consensus 89 ~~~~~~~~~~v~~~~fs~-~~~~~~s~~~d~~i~iWD~~~~~~i~~l~-~~~~V~~v~~~~~~~vv~~ 154 (161)
+..+-. .-..+++++ +....++....+.|...|+..+.. ..+. .-....++++..+++.+..
T Consensus 161 l~~~~~---~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~~~ly~tD 224 (628)
T 4a0p_A 161 LVPNVG---RANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQDYIYWTD 224 (628)
T ss_dssp EECSCS---SEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEETTEEEEEE
T ss_pred EECCCC---CcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEECCEEEEec
Confidence 332211 124566665 233344444567899999865443 2222 2234557777667776665
No 329
>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus}
Probab=24.94 E-value=1.7e+02 Score=20.83 Aligned_cols=39 Identities=13% Similarity=-0.029 Sum_probs=28.8
Q ss_pred CeEEEEecCCCCeEEEEEecCceEEEEECCcEEEEEeccc
Q psy505 118 RKLTVCHFKRGSEICNYSFSNTILAVKLNRKKEEEEDEEE 157 (161)
Q Consensus 118 ~~i~iWD~~~~~~i~~l~~~~~V~~v~~~~~~~vv~~~~~ 157 (161)
+.|.++|..+++.+..+.| +.|.++.++++.+.+...+.
T Consensus 152 ~GI~v~~~~tk~~l~~~~~-~~I~~~~~~~~~f~I~~~~~ 190 (222)
T 4f7g_A 152 ECVMRVDEKTKEVIQEWSL-TNIKRWAASPKSFTLDFGDY 190 (222)
T ss_dssp SEEEEECTTTCCEEEEEEG-GGCCEEEECSSEEEEECCTT
T ss_pred CcEEEEcCCCCceeEeccH-HHeeeeccCCCEEEEEECCc
Confidence 4688999888877666665 56777788888877776654
No 330
>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton, structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A 2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B
Probab=23.92 E-value=1.9e+02 Score=20.12 Aligned_cols=39 Identities=13% Similarity=-0.029 Sum_probs=28.8
Q ss_pred CeEEEEecCCCCeEEEEEecCceEEEEECCcEEEEEeccc
Q psy505 118 RKLTVCHFKRGSEICNYSFSNTILAVKLNRKKEEEEDEEE 157 (161)
Q Consensus 118 ~~i~iWD~~~~~~i~~l~~~~~V~~v~~~~~~~vv~~~~~ 157 (161)
+.|.++|..++..+..+.| +.|.++.++++.+.+...+.
T Consensus 141 ~Gi~~~~~~~~~~l~~~~~-~~I~~~~~~~~~f~i~~~~~ 179 (206)
T 1mix_A 141 ECVMRVDEKTKEVIQEWSL-TNIKRWAASPKSFTLDFGDY 179 (206)
T ss_dssp SEEEEEETTTCCEEEEEEG-GGCCEEEECSSEEEEECGGG
T ss_pred cceEEeCCCCCceeeeeeh-hHeeecccCCCEEEEEeCcc
Confidence 4688999988887666666 56667888888877766553
No 331
>3d8d_A Amyloid beta A4 precursor protein-binding family 1; alpha-beta structure, phosphotyrosine binding domain; 2.20A {Homo sapiens} PDB: 3d8e_A 3d8f_A
Probab=23.91 E-value=71 Score=22.12 Aligned_cols=19 Identities=5% Similarity=0.095 Sum_probs=14.8
Q ss_pred cceEEEEEcCCCCceeeee
Q psy505 37 IGEVQIFDADNLHAKTMIP 55 (161)
Q Consensus 37 dg~v~iWd~~~~~~~~~l~ 55 (161)
+++|+|.|..++..+..+.
T Consensus 63 ~~tlrLvD~~tk~~L~~~p 81 (148)
T 3d8d_A 63 DETLKLVEPQSQALLHAQP 81 (148)
T ss_dssp TTEEEEECTTTCCEEEEEE
T ss_pred CCeEEEecCCCCceEEEee
Confidence 6889999988877766654
No 332
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=21.42 E-value=2.6e+02 Score=20.95 Aligned_cols=133 Identities=8% Similarity=-0.035 Sum_probs=66.0
Q ss_pred eEEeecCCCceEEEEcCCCCcceEEEEEcCCCCcee-eeeccCccceeee-------eEEEecCCc-eEEEEeCCcCcee
Q psy505 17 ICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKT-MIPAHDSPLAALA-------SLSVGTKSG-YRLFSLNSIDTLE 87 (161)
Q Consensus 17 v~~~~~~~d~~~la~~g~~~dg~v~iWd~~~~~~~~-~l~~H~~~V~~l~-------~lasgs~dg-iriwd~~~~~~~~ 87 (161)
..++.+++.+..|-.+... .+.|..+++.++.... .+...-....+++ ++.+-+..+ |.++++... ...
T Consensus 37 ~~~ld~d~~~~~lyw~D~~-~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~-~~~ 114 (318)
T 3sov_A 37 AAAVDFVFSHGLIYWSDVS-EEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS-LRK 114 (318)
T ss_dssp EEEEEEEGGGTEEEEEETT-TTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC-SCE
T ss_pred cEEEEEEeCCCEEEEEECC-CCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCC-cEE
Confidence 4577777643333332332 6889999988764322 2222222344454 333434444 999988543 222
Q ss_pred eEEeecCcceEEEEEeecC-CeEEEEec-CCCCeEEEEecCCCCeEEEEEe--cCceEEEEECC--cEEEEEe
Q psy505 88 QIYENSQEDVCIVERLFSS-SLVAVVSL-SSPRKLTVCHFKRGSEICNYSF--SNTILAVKLNR--KKEEEED 154 (161)
Q Consensus 88 ~~~~~~~~~~~v~~~~fs~-~~~~~~s~-~~d~~i~iWD~~~~~~i~~l~~--~~~V~~v~~~~--~~~vv~~ 154 (161)
.+....... -..+++.| ++...++. +....|...|.. |+....+.. -..-.+++++| .++.++.
T Consensus 115 ~l~~~~~~~--P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~~~~l~~Pnglavd~~~~~lY~aD 184 (318)
T 3sov_A 115 VLFWQELDQ--PRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPNGLTLDYEEQKLYWAD 184 (318)
T ss_dssp EEECSSCSS--EEEEEEEGGGTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCC--ccEEEEeCCCCEEEEEecCCCCEEEEEEcC-CCCeEEEEECCCCCccEEEEeccCCEEEEEE
Confidence 232221111 23555665 33333433 234578777765 332233321 13457788886 3566654
Done!