RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy505
         (161 letters)



>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
           acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 317

 Score = 31.6 bits (70), Expect = 0.031
 Identities = 9/64 (14%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 2   KVLHTIRDTPPNPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPL 61
             L T+     + N +  +  +S   ++     +    ++++D  N      + AH+  +
Sbjct: 238 MCLMTLVG---HDNWVRGVLFHSGGKFILSCADD--KTLRVWDYKNKRCMKTLNAHEHFV 292

Query: 62  AALA 65
            +L 
Sbjct: 293 TSLD 296


>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow
          (Bos taurus) [TaxId: 9913]}
          Length = 371

 Score = 31.0 bits (68), Expect = 0.049
 Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 4/51 (7%)

Query: 17 ICCLCVNSDNCYLAYPGSNSIGEVQIFDADN--LHAKTMIPAHDSPLAALA 65
          I C   N D   +A   +N   EV I++           +  H+  +  + 
Sbjct: 10 ISCHAWNKDRTQIAICPNN--HEVHIYEKSGNKWVQVHELKEHNGQVTGVD 58


>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 337

 Score = 30.9 bits (68), Expect = 0.051
 Identities = 7/69 (10%), Positives = 28/69 (40%), Gaps = 12/69 (17%)

Query: 2   KVLHTIRDTPPNPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMI-----PA 56
           + ++T+         +C + +++   ++    +   G V+++D  +   K+ +       
Sbjct: 43  RQINTLNHG----EVVCAVTISNPTRHVY---TGGKGCVKVWDISHPGNKSPVSQLDCLN 95

Query: 57  HDSPLAALA 65
            D+ + +  
Sbjct: 96  RDNYIRSCK 104


>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
           protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
          Length = 340

 Score = 30.1 bits (66), Expect = 0.093
 Identities = 8/61 (13%), Positives = 18/61 (29%), Gaps = 2/61 (3%)

Query: 5   HTIRDTPPNPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAAL 64
                      GI  +  +     L     +      ++DA       ++  HD+ ++ L
Sbjct: 261 LMTYSHDNIICGITSVSFSKSGRLLLAGYDD--FNCNVWDALKADRAGVLAGHDNRVSCL 318

Query: 65  A 65
            
Sbjct: 319 G 319


>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
          (Caenorhabditis elegans) [TaxId: 6239]}
          Length = 311

 Score = 29.1 bits (63), Expect = 0.25
 Identities = 6/48 (12%), Positives = 9/48 (18%), Gaps = 3/48 (6%)

Query: 18 CCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALA 65
            L        + Y    S   V      +L    +   H        
Sbjct: 21 VVLGNTPAGDKIQYCNGTS---VYTVPVGSLTDTEIYTEHSHQTTVAK 65


>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 388

 Score = 28.6 bits (62), Expect = 0.35
 Identities = 6/69 (8%), Positives = 24/69 (34%), Gaps = 2/69 (2%)

Query: 5   HTIRDTPPNPNGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAAL 64
                   + + +  +    ++ Y+     +    V  +D  + +   M+  H + + ++
Sbjct: 299 TCEVTYIGHKDFVLSVATTQNDEYILSGSKD--RGVLFWDKKSGNPLLMLQGHRNSVISV 356

Query: 65  ASLSVGTKS 73
           A  +  +  
Sbjct: 357 AVANGSSLG 365



 Score = 26.3 bits (56), Expect = 2.1
 Identities = 9/64 (14%), Positives = 24/64 (37%), Gaps = 3/64 (4%)

Query: 15  NGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHAKTMIPAHDSPLAALASLSVGTKSG 74
           + +CC+  ++D  YLA   +      Q++   +      +    +      +L+  +   
Sbjct: 63  SVVCCVKFSNDGEYLA---TGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 119

Query: 75  YRLF 78
             L+
Sbjct: 120 SDLY 123


>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1
          {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
          Length = 299

 Score = 26.9 bits (57), Expect = 1.2
 Identities = 7/52 (13%), Positives = 16/52 (30%), Gaps = 3/52 (5%)

Query: 15 NGICCLCVNSDNCYLAYPGSNSIGEVQIFDADNLHA-KTMIPAHDSPLAALA 65
            I  L  ++D   L        G +  +D     + +     H + +  + 
Sbjct: 13 KAITALSSSADGKTLFS-ADAE-GHINSWDISTGISNRVFPDVHATMITGIK 62


>d1jw2a_ a.23.5.1 (A:) Hemolysin expression modulating protein HHA
          {Escherichia coli [TaxId: 562]}
          Length = 72

 Score = 24.0 bits (52), Expect = 3.6
 Identities = 8/24 (33%), Positives = 15/24 (62%)

Query: 75 YRLFSLNSIDTLEQIYENSQEDVC 98
           RL    +IDTLE++ E ++ ++ 
Sbjct: 13 MRLRRCQTIDTLERVIEKNKYELS 36


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.131    0.378 

Gapped
Lambda     K      H
   0.267   0.0616    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 564,722
Number of extensions: 22832
Number of successful extensions: 70
Number of sequences better than 10.0: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 16
Length of query: 161
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 83
Effective length of database: 1,336,656
Effective search space: 110942448
Effective search space used: 110942448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (22.9 bits)