BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5051
(87 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1K8Q|A Chain A, Crystal Structure Of Dog Gastric Lipase In Complex With A
Phosphonate Inhibitor
pdb|1K8Q|B Chain B, Crystal Structure Of Dog Gastric Lipase In Complex With A
Phosphonate Inhibitor
Length = 377
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 44/71 (61%)
Query: 1 MGIYDLPVVIDYILSVTGQPKLSYIGHSMGTTMFWVLLSEKPEYNDKIEVMIGMAPIAFI 60
M YDLP ID+IL TGQ KL Y+GHS GTT+ ++ S P+ +I+ +AP+A +
Sbjct: 126 MAKYDLPATIDFILKKTGQDKLHYVGHSQGTTIGFIAFSTNPKLAKRIKTFYALAPVATV 185
Query: 61 NHVKSPVIRFL 71
+ ++ + + +
Sbjct: 186 KYTETLINKLM 196
>pdb|1HLG|A Chain A, Crystal Structure Of Human Gastric Lipase
pdb|1HLG|B Chain B, Crystal Structure Of Human Gastric Lipase
Length = 371
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Query: 1 MGIYDLPVVIDYILSVTGQPKLSYIGHSMGTTMFWVLLSEKPEYNDKIEVMIGMAPIAFI 60
M YDLP ID+I+ TGQ +L Y+GHS GTT+ ++ S P +I+ +AP+A +
Sbjct: 118 MAKYDLPATIDFIVKKTGQKQLHYVGHSQGTTIGFIAFSTNPSLAKRIKTFYALAPVATV 177
Query: 61 NHVKSPV--IRFL 71
+ KS + +RF+
Sbjct: 178 KYTKSLINKLRFV 190
>pdb|2ZYR|A Chain A, A. Fulgidus Lipase With Fatty Acid Fragment And Magnesium
pdb|2ZYR|B Chain B, A. Fulgidus Lipase With Fatty Acid Fragment And Magnesium
Length = 484
Score = 32.7 bits (73), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 6 LPVVIDYILSVTGQPKLSYIGHSMGTTMFWVLLSEKPEYNDKIEVMI 52
L VID L+ +G K+ +GHSMGT ++ PE K+ +I
Sbjct: 114 LDRVIDEALAESGADKVDLVGHSMGTFFLVRYVNSSPERAAKVAHLI 160
>pdb|2ZYS|A Chain A, A. Fulgidus Lipase With Fatty Acid Fragment And Chloride
Length = 479
Score = 32.7 bits (73), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 6 LPVVIDYILSVTGQPKLSYIGHSMGTTMFWVLLSEKPEYNDKIEVMI 52
L VID L+ +G K+ +GHSMGT ++ PE K+ +I
Sbjct: 114 LDRVIDEALAESGADKVDLVGHSMGTFFLVRYVNSSPERAAKVAHLI 160
>pdb|2ZYI|A Chain A, A. Fulgidus Lipase With Fatty Acid Fragment And Calcium
pdb|2ZYI|B Chain B, A. Fulgidus Lipase With Fatty Acid Fragment And Calcium
Length = 475
Score = 32.7 bits (73), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 6 LPVVIDYILSVTGQPKLSYIGHSMGTTMFWVLLSEKPEYNDKIEVMI 52
L VID L+ +G K+ +GHSMGT ++ PE K+ +I
Sbjct: 114 LDRVIDEALAESGADKVDLVGHSMGTFFLVRYVNSSPERAAKVAHLI 160
>pdb|2ZYH|A Chain A, Mutant A. Fulgidus Lipase S136a Complexed With Fatty Acid
Fragment
pdb|2ZYH|B Chain B, Mutant A. Fulgidus Lipase S136a Complexed With Fatty Acid
Fragment
Length = 475
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 6 LPVVIDYILSVTGQPKLSYIGHSMGTTMFWVLLSEKPEYNDKIEVMI 52
L VID L+ +G K+ +GH+MGT ++ PE K+ +I
Sbjct: 114 LDRVIDEALAESGADKVDLVGHAMGTFFLVRYVNSSPERAAKVAHLI 160
>pdb|3BF8|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF8|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 21 KLSYIGHSMGTTMFWVLLSEKPEYNDKIEVMIGMAPIAFINHVK 64
K ++IGHSMG L + P+ DK+ V I +AP+ + HV+
Sbjct: 82 KATFIGHSMGGKAVMALTALAPDRIDKL-VAIDIAPVDY--HVR 122
>pdb|3BF7|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF7|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 21 KLSYIGHSMGTTMFWVLLSEKPEYNDKIEVMIGMAPIAFINHVK 64
K ++IGHSMG L + P+ DK+ V I +AP+ + HV+
Sbjct: 82 KATFIGHSMGGKAVMALTALAPDRIDKL-VAIDIAPVDY--HVR 122
>pdb|1EX9|A Chain A, Crystal Structure Of The Pseudomonas Aeruginosa Lipase
Complexed With
Rc-(Rp,Sp)-1,2-Dioctylcarbamoyl-Glycero-3-O-
Octylphosphonate
Length = 285
Score = 29.3 bits (64), Expect = 0.52, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 23/34 (67%)
Query: 10 IDYILSVTGQPKLSYIGHSMGTTMFWVLLSEKPE 43
++ I++++GQPK++ IGHS G + + +P+
Sbjct: 64 VEEIVALSGQPKVNLIGHSHGGPTIRYVAAVRPD 97
>pdb|1C4X|A Chain A, 2-Hydroxy-6-Oxo-6-Phenylhexa-2,4-Dienoate Hydrolase (Bphd)
From Rhodococcus Sp. Strain Rha1
Length = 285
Score = 28.5 bits (62), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 18 GQPKLSYIGHSMGTTMFWVLLSEKPEYNDKIEVMIGMAPIAFINHVKSPVIRFLATISDP 77
G K +G+SMG + L+ E PE DK+ +M + A +N + R LA +DP
Sbjct: 101 GIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVG--APMNARPPELARLLAFYADP 158
>pdb|2V73|A Chain A, The Structure Of The Family 40 Cbm From C. Perfringens
Nanj In Complex With A Sialic Acid Containing Molecule
pdb|2V73|B Chain B, The Structure Of The Family 40 Cbm From C. Perfringens
Nanj In Complex With A Sialic Acid Containing Molecule
Length = 191
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 1 MGIYDLPVVIDYILSVTGQPK 21
M IYD PV +Y+L TG+ K
Sbjct: 171 MNIYDKPVSDNYLLRKTGETK 191
>pdb|1VKH|A Chain A, Crystal Structure Of A Putative Serine Hydrolase (Ydr428c)
From Saccharomyces Cerevisiae At 1.85 A Resolution
pdb|1VKH|B Chain B, Crystal Structure Of A Putative Serine Hydrolase (Ydr428c)
From Saccharomyces Cerevisiae At 1.85 A Resolution
Length = 273
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 3 IYDLPVVIDYILSVTGQPKLSYIGHSMGTTMFWVLLSEKPEYNDK 47
+YD I ++ G ++ +GHS+G T W +L+ + +K
Sbjct: 97 LYDAVSNITRLVKEKGLTNINXVGHSVGATFIWQILAALKDPQEK 141
>pdb|1UTH|A Chain A, Dntr From Burkholderia Sp. Strain Dnt In Complex With
Thiocyanate
Length = 315
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 53 GMAPIAFINHVKSPVIRFLATISDPLAVSNRF 84
GM P + H+ PVI L T+ L N F
Sbjct: 67 GMEPTPYALHLAEPVIYALNTLQTALTTRNSF 98
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 25.8 bits (55), Expect = 6.5, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 10 IDYILSVTGQPKLSYIGHSMGTTMFWVLLSEKPEYNDKI-EVMIGMAPIAFINHVKSPVI 68
ID ++ L +GHSMG + + S +P+ KI E+++ P+ K +
Sbjct: 85 IDRVIQELPDQPLLLVGHSMGAMLATAIASVRPK---KIKELILVELPLPAEESKKESAV 141
Query: 69 RFLATISDPLAVSNRFPIL 87
L T D L+ + + PI
Sbjct: 142 NQLTTCLDYLSSTPQHPIF 160
>pdb|4DNP|A Chain A, Crystal Structure Of Dad2
Length = 269
Score = 25.4 bits (54), Expect = 7.7, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 7 PVVID--YILSVTGQPKLSYIGHSMGTTMFWVLLS-EKPEYNDKIEVMIGMAPIAFIN 61
P V D +IL G +Y+GHS+ + M +L S +PE K+ ++IG +P F+N
Sbjct: 75 PYVDDLLHILDALGIDCCAYVGHSV-SAMIGILASIRRPELFSKL-ILIGASP-RFLN 129
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.142 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,493,074
Number of Sequences: 62578
Number of extensions: 84623
Number of successful extensions: 345
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 334
Number of HSP's gapped (non-prelim): 16
length of query: 87
length of database: 14,973,337
effective HSP length: 55
effective length of query: 32
effective length of database: 11,531,547
effective search space: 369009504
effective search space used: 369009504
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)