RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5051
(87 letters)
>gnl|CDD|215470 PLN02872, PLN02872, triacylglycerol lipase.
Length = 395
Score = 45.6 bits (108), Expect = 3e-07
Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 1 MGIYDLPVVIDYILSVTGQPKLSYIGHSMGTTMFWVLLSEKPEYNDKIEVMIGMAPIAFI 60
+ +YDL +I Y+ S+T K+ +GHS GT M L+ +P + +E + PI+++
Sbjct: 142 LALYDLAEMIHYVYSITNS-KIFIVGHSQGTIMSLAALT-QPNVVEMVEAAALLCPISYL 199
Query: 61 NHVKSP-VIRFLATISDPLAVS 81
+HV +P V+R + D + V+
Sbjct: 200 DHVTAPLVLRMVFMHLDQMVVA 221
>gnl|CDD|201306 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This
catalytic domain is found in a very wide range of
enzymes.
Length = 226
Score = 39.4 bits (92), Expect = 4e-05
Identities = 12/59 (20%), Positives = 28/59 (47%)
Query: 5 DLPVVIDYILSVTGQPKLSYIGHSMGTTMFWVLLSEKPEYNDKIEVMIGMAPIAFINHV 63
DL ++ +L G K++ +GHSMG + ++ P+ + ++ + P + +
Sbjct: 27 DLAEDLEALLDALGLDKVNLVGHSMGGLIALAYAAKYPDRVKALVLVGTVHPAGLSSPL 85
>gnl|CDD|182637 PRK10673, PRK10673, acyl-CoA esterase; Provisional.
Length = 255
Score = 30.9 bits (70), Expect = 0.053
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 20 PKLSYIGHSMGTTMFWVLLSEKPEYNDKIEVMIGMAPIAF 59
K ++IGHSMG L + P+ DK+ V I +AP+ +
Sbjct: 81 EKATFIGHSMGGKAVMALTALAPDRIDKL-VAIDIAPVDY 119
>gnl|CDD|224001 COG1075, LipA, Predicted acetyltransferases and hydrolases with the
alpha/beta hydrolase fold [General function prediction
only].
Length = 336
Score = 29.8 bits (67), Expect = 0.13
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 10 IDYILSVTGQPKLSYIGHSMGTTMFWVLLSEKPEYN 45
+D +L+ TG K++ IGHSMG L N
Sbjct: 117 VDEVLAKTGAKKVNLIGHSMGGLDSRYYLGVLGGAN 152
>gnl|CDD|223669 COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta
hydrolase superfamily) [General function prediction
only].
Length = 282
Score = 28.8 bits (63), Expect = 0.29
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 3 IYDLPVVIDYILSVTGQPKLSYIGHSMGTTMFWVLLSEKPEYNDKIEVMIGMAPIAFI 60
+ + +L G K+ +GHSMG + L P+ + V+IG AP +
Sbjct: 71 LSAYADDLAALLDALGLEKVVLVGHSMGGAVALALALRHPDRVRGL-VLIGPAPPPGL 127
>gnl|CDD|227121 COG4782, COG4782, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 377
Score = 28.5 bits (64), Expect = 0.34
Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 5 DLPVVIDYILSVTGQPKLSYIGHSMGTTMFWVLLS 39
L ++ Y+ + ++ + HSMGT W+L+
Sbjct: 176 ALERLLRYLATDKPVKRIYLLAHSMGT---WLLME 207
>gnl|CDD|218844 pfam05990, DUF900, Alpha/beta hydrolase of unknown function
(DUF900). This family consists of several hypothetical
proteins of unknown function mostly found in Rhizobium
species. Members of this family have an alpha/beta
hydrolase fold.
Length = 230
Score = 28.5 bits (64), Expect = 0.38
Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 5 DLPVVIDYILSVTGQPKLSYIGHSMGTTMFWVLLS 39
L ++ Y+ + ++ I HSMGT W+++
Sbjct: 79 ALERLLRYLATTPPVKRIHLIAHSMGT---WLVME 110
>gnl|CDD|130895 TIGR01836, PHA_synth_III_C, poly(R)-hydroxyalkanoic acid synthase,
class III, PhaC subunit. This model represents the PhaC
subunit of a heterodimeric form of polyhydroxyalkanoic
acid (PHA) synthase. Excepting the PhaC of Bacillus
megaterium (which needs PhaR), all members require PhaE
(TIGR01834) for activity and are designated class III.
This enzyme builds ester polymers for carbon and energy
storage that accumulate in inclusions, and both this
enzyme and the depolymerase associate with the
inclusions. Class III enzymes polymerize
short-chain-length hydroxyalkanoates [Fatty acid and
phospholipid metabolism, Biosynthesis].
Length = 350
Score = 27.8 bits (62), Expect = 0.64
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 6 LPVVIDYILSVTGQPKLSYIGHSMGTTMFWVLLSEKPEYNDKIEVMIGMAPI 57
+ +DYI + ++S +G G T + P DKI+ ++ M
Sbjct: 122 IDKCVDYICRTSKLDQISLLGICQGGTFSLCYAALYP---DKIKNLVTMVTP 170
>gnl|CDD|225783 COG3243, PhaC, Poly(3-hydroxyalkanoate) synthetase [Lipid
metabolism].
Length = 445
Score = 27.0 bits (60), Expect = 1.3
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 10 IDYILSVTGQPKLSYIGHSMGTTMFWVLLSEKPEYNDK 47
ID + +TGQ ++ IG+ +G T+ L+ K
Sbjct: 171 IDTVKDITGQKDINLIGYCVGGTLLAAALALMAAKRIK 208
>gnl|CDD|217043 pfam02450, LACT, Lecithin:cholesterol acyltransferase.
Lecithin:cholesterol acyltransferase (LACT) is involved
in extracellular metabolism of plasma lipoproteins,
including cholesterol.
Length = 377
Score = 26.3 bits (58), Expect = 1.9
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 10 IDYILSVTGQPKLSYIGHSMGTTMF-WVLLSEKPE--YNDKIEVMIGMA 55
I+ L ++GQ + IGHSMG + + LL + E + I+ I +
Sbjct: 110 IEEALKLSGQK-VVLIGHSMGNLLVLYFLLWVEAEGWKDQHIDAFISLG 157
>gnl|CDD|227099 COG4757, COG4757, Predicted alpha/beta hydrolase [General function
prediction only].
Length = 281
Score = 25.9 bits (57), Expect = 3.0
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 5 DLPVVIDYILSVTGQPKLSYIGHSMGTTMFWVLLSEKPEYN 45
D P + + L ++GHS G LL + P+Y
Sbjct: 90 DFPAALAALKKALPGHPLYFVGHSFGGQAL-GLLGQHPKYA 129
>gnl|CDD|218405 pfam05057, DUF676, Putative serine esterase (DUF676). This family
of proteins are probably serine esterase type enzymes
with an alpha/beta hydrolase fold.
Length = 214
Score = 25.1 bits (55), Expect = 4.9
Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 9 VIDYILSVTGQPKLSYIGHSMGT---TMFWVLLSEKPEYNDKIEVMIGMAPIAFI 60
V++++ + K+S++GHS+G L + G+ P+ FI
Sbjct: 64 VLEFVQDGSDGKKISFVGHSLGGLIARYAIGKLYDSAMSTTFKGFFKGLEPMNFI 118
>gnl|CDD|221720 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family. This family
contains alpha/beta hydrolase enzymes of diverse
specificity.
Length = 187
Score = 24.7 bits (54), Expect = 6.9
Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 25 IGHSMGTTMFWVLLSEKPEYNDKIEVMIGMAPIAFINHVKSPVIRFLATISDPLA 79
+GHS+G + + +PE + V+I + + LA + L
Sbjct: 70 VGHSLGGAVALAAAARRPERVAGL-VLISPPLRDLEELLAADAAALLALLRAALL 123
>gnl|CDD|239158 cd02757, MopB_Arsenate-R, This CD includes the respiratory arsenate
reductase, As(V), catalytic subunit (ArrA) and other
related proteins. These members belong to the
molybdopterin_binding (MopB) superfamily of proteins.
Length = 523
Score = 24.7 bits (54), Expect = 8.1
Identities = 10/64 (15%), Positives = 18/64 (28%), Gaps = 12/64 (18%)
Query: 19 QPKLSYIGHSMGTTMFWVLLSEK-----------PEYNDKIEVMIGMAPIA-FINHVKSP 66
QP + +G T + L++K + G F N +
Sbjct: 433 QPVVKSLGEVREETEILIELAKKLDPKGSDGMKRYAPGQFKDPETGKNNRWEFENVFPTE 492
Query: 67 VIRF 70
+F
Sbjct: 493 TGKF 496
>gnl|CDD|224691 COG1777, COG1777, Predicted transcriptional regulators
[Transcription].
Length = 217
Score = 24.3 bits (53), Expect = 9.2
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 37 LLSEKPEYNDKIEVMIGMAPIAFINHVK 64
LL+ +P Y +I +G++ A + H++
Sbjct: 23 LLTRRPCYVSEISRELGVSQKAVLKHLR 50
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.142 0.425
Gapped
Lambda K H
0.267 0.0673 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,552,853
Number of extensions: 364445
Number of successful extensions: 353
Number of sequences better than 10.0: 1
Number of HSP's gapped: 351
Number of HSP's successfully gapped: 24
Length of query: 87
Length of database: 10,937,602
Length adjustment: 55
Effective length of query: 32
Effective length of database: 8,498,132
Effective search space: 271940224
Effective search space used: 271940224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.3 bits)