RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5051
(87 letters)
>1k8q_A Triacylglycerol lipase, gastric; APHA beta hydrolase fold,
hydrolase; HET: NAG BOG C11; 2.70A {Canis lupus
familiaris} SCOP: c.69.1.6 PDB: 1hlg_A*
Length = 377
Score = 101 bits (253), Expect = 1e-27
Identities = 28/78 (35%), Positives = 45/78 (57%)
Query: 1 MGIYDLPVVIDYILSVTGQPKLSYIGHSMGTTMFWVLLSEKPEYNDKIEVMIGMAPIAFI 60
M YDLP ID+IL TGQ KL Y+GHS GTT+ ++ S P+ +I+ +AP+A +
Sbjct: 126 MAKYDLPATIDFILKKTGQDKLHYVGHSQGTTIGFIAFSTNPKLAKRIKTFYALAPVATV 185
Query: 61 NHVKSPVIRFLATISDPL 78
+ ++ + + + S
Sbjct: 186 KYTETLINKLMLVPSFLF 203
>2zyr_A Lipase, putative; fatty acid, hydrolase; HET: 1PE; 1.77A
{Archaeoglobus fulgidus} PDB: 2zys_A* 2zyi_A* 2zyh_A*
Length = 484
Score = 49.2 bits (116), Expect = 1e-08
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 4 YDLPVVIDYILSVTGQPKLSYIGHSMGTTMFWVLLSEKPEYNDKIEVMIGMAP 56
L VID L+ +G K+ +GHSMGT ++ PE K+ +I +
Sbjct: 112 SRLDRVIDEALAESGADKVDLVGHSMGTFFLVRYVNSSPERAAKVAHLILLDG 164
>2rau_A Putative esterase; NP_343859.1, putative lipase, structural
genomics, joint CEN structural genomics, JCSG; HET: PG4
UNL; 1.85A {Sulfolobus solfataricus P2}
Length = 354
Score = 42.3 bits (98), Expect = 4e-06
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 3 IYDLPVVIDYILSVTGQPKLSYIGHSMGTTMFWVLLSE-KPEYNDKIEVMIGMAPIA 58
I D+ V+ +I +GQ ++ G S G S + +++ P
Sbjct: 127 ISDIKEVVSFIKRDSGQERIYLAGESFGGIAALNYSSLYWKNDIKGL-ILLDGGPTK 182
>2x5x_A PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE, hydrolase,
biodegradation, catal; HET: PG4; 1.20A {Paucimonas
lemoignei} PDB: 2vtv_A* 2x76_A
Length = 342
Score = 40.7 bits (94), Expect = 1e-05
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 5 DLPVVIDYILSVTGQPKLSYIGHSMGTTMFWVLLSEKPEYNDKIEVMIGMAP 56
+ ID + + TG+ ++ + HSMG +M L + I +A
Sbjct: 113 IIKTFIDKVKAYTGKSQVDIVAHSMGVSMSLATLQ-YYNNWTSVRKFINLAG 163
>3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase,
cinnamoyl/Fe esterase, hydroxycinammates, extracellular;
HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A*
3pfc_A* 3s2z_A* 3pf8_A 3qm1_A*
Length = 270
Score = 38.6 bits (90), Expect = 6e-05
Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 5 DLPVVIDYILSVTGQPKLSYIGHSMGTTMFWVLLSEKPEYNDKIEVMIGMAP 56
D +++Y+ + + +GH+ G V Y D I+ ++ +AP
Sbjct: 104 DANAILNYVKTDPHVRNIYLVGHAQGG---VVASMLAGLYPDLIKKVVLLAP 152
>3icv_A Lipase B, CALB; circular permutation, cleavage on PAIR of basic
residues, glycoprotein, hydrolase, lipid degradation,
zymogen, disulf; HET: NAG BTB; 1.49A {Candida
antarctica} PDB: 3icw_A*
Length = 316
Score = 36.7 bits (84), Expect = 3e-04
Identities = 11/47 (23%), Positives = 21/47 (44%)
Query: 10 IDYILSVTGQPKLSYIGHSMGTTMFWVLLSEKPEYNDKIEVMIGMAP 56
I + + +G KL + S G + L+ P K++ ++ AP
Sbjct: 121 ITTLYAGSGNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAP 167
>1tca_A Lipase; hydrolase(carboxylic esterase); HET: NAG; 1.55A {Candida
antarctica} SCOP: c.69.1.17 PDB: 1lbs_A* 1lbt_A* 1tcb_A*
1tcc_A*
Length = 317
Score = 36.7 bits (84), Expect = 3e-04
Identities = 11/47 (23%), Positives = 21/47 (44%)
Query: 10 IDYILSVTGQPKLSYIGHSMGTTMFWVLLSEKPEYNDKIEVMIGMAP 56
I + + +G KL + S G + L+ P K++ ++ AP
Sbjct: 87 ITALYAGSGNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAP 133
>2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A*
Length = 251
Score = 33.1 bits (76), Expect = 0.005
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 5 DLPVVIDYILSVTGQPKLSYIGHSMGTTMFWVLLSEKPEYNDKIEVMIGMAPIAFINHV 63
++ V+DY + + GHS G ++ D I+ +I ++P A I +
Sbjct: 85 NILAVVDYAKKLDFVTDIYMAGHSQGG---LSVMLAAAMERDIIKALIPLSPAAMIPEI 140
>1isp_A Lipase; alpha/beta hydrolase fold, hydrolase; 1.30A {Bacillus
subtilis} SCOP: c.69.1.18 PDB: 1i6w_A 1r4z_A* 1r50_A*
2qxu_A 2qxt_A 1t4m_A 1t2n_A 3d2a_A 3qzu_A 3d2b_A 3d2c_A
3qmm_A
Length = 181
Score = 32.4 bits (74), Expect = 0.008
Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 10 IDYILSVTGQPKLSYIGHSMGTTMFWVLLSEKPEYNDKIEVMIGMAP 56
+ +L TG K+ + HSMG + + +K+ ++ +
Sbjct: 59 VQKVLDETGAKKVDIVAHSMGGANTLYYIK-NLDGGNKVANVVTLGG 104
>1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13
Length = 305
Score = 32.3 bits (73), Expect = 0.009
Identities = 9/69 (13%), Positives = 25/69 (36%), Gaps = 6/69 (8%)
Query: 2 GIYDLPVVIDYILSVTGQPKLSYIGHSMGTTMFWVLLSEKPEYNDKIEVMIGMAPIAFIN 61
G L V ++ + G + I S+ + + ++S+ ++ +I + +
Sbjct: 89 GKNSLCTVYHWLQT-KGTQNIGLIAASLSARVAYEVISDL-----ELSFLITAVGVVNLR 142
Query: 62 HVKSPVIRF 70
+ F
Sbjct: 143 DTLEKALGF 151
>3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A
{Escherichia coli} PDB: 3bf8_A
Length = 255
Score = 31.2 bits (71), Expect = 0.021
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 4 YDLPVVIDYILSVTGQPKLSYIGHSMGTTMFWVLLSEKPEYNDKIEVMIGMAPIAFINHV 63
DL +D + K ++IGHSMG L + P+ DK+ V I +AP+ +
Sbjct: 69 QDLVDTLDAL----QIDKATFIGHSMGGKAVMALTALAPDRIDKL-VAIDIAPVDYHVRR 123
Query: 64 KSPVIRFLATISDPLAVS 81
+ + +S+ A +
Sbjct: 124 HDEIFAAINAVSESDAQT 141
>2q0x_A Protein DUF1749, uncharacterized protein; alpha/beta hydrolase
fold, structural genomics, structural G of pathogenic
protozoa consortium; 2.20A {Trypanosoma brucei}
Length = 335
Score = 28.9 bits (64), Expect = 0.16
Identities = 9/58 (15%), Positives = 18/58 (31%), Gaps = 5/58 (8%)
Query: 3 IYDLPVVIDYILSVTGQPKLSYIGHSMGT--TMFWVLLSEKPEYNDKIEVMIGMAPIA 58
D+ +I +L +++ S GT + S I +I +
Sbjct: 91 AEDVDDLIGILLRDHCMNEVALFATSTGTQLVFELLENSAHKS---SITRVILHGVVC 145
>1ex9_A Lactonizing lipase; alpha-beta hydrolase fold, phosphonate
inhibitor; HET: OCP; 2.54A {Pseudomonas aeruginosa}
SCOP: c.69.1.18
Length = 285
Score = 28.1 bits (62), Expect = 0.29
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 10 IDYILSVTGQPKLSYIGHSMGTTMFWVLLSEKPEY 44
++ I++++GQPK++ IGHS G + + +P+
Sbjct: 64 VEEIVALSGQPKVNLIGHSHGGPTIRYVAAVRPDL 98
>1ys1_X Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor hexylphosphonic
acid (R) 2-methyl-3-phenylpropyl ester, hydrolase; HET:
2HR; 1.10A {Burkholderia cepacia} PDB: 1ys2_X* 4lip_D
1hqd_A 2lip_A 1oil_A* 3lip_A 2nw6_A 5lip_A* 1cvl_A
2es4_A 1tah_B 1qge_D 1qge_E
Length = 320
Score = 28.1 bits (62), Expect = 0.30
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 10 IDYILSVTGQPKLSYIGHSMGTTMFWVLLSEKPEY 44
+ +L+ TG K++ +GHS G + + P+
Sbjct: 69 VKTVLAATGATKVNLVGHSQGGLTSRYVAAVAPDL 103
>4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A
4ao8_A
Length = 259
Score = 27.9 bits (61), Expect = 0.32
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 3 IYDLPVVIDYILSVTGQPKLSYIGHSMGTTMFWVLLSEKPE 43
I D +D+I + G + G SMGT M + +
Sbjct: 131 IADWAAALDFIEAEEGPRPTGWWGLSMGTMMGLPVTASDKR 171
>3l80_A Putative uncharacterized protein SMU.1393C; alpha/beta hydrolase
fold, carboxylesterase, Ser- hydrolase; 2.00A
{Streptococcus mutans}
Length = 292
Score = 27.6 bits (61), Expect = 0.41
Identities = 9/68 (13%), Positives = 19/68 (27%), Gaps = 10/68 (14%)
Query: 4 YDLPVVIDYILSV---TGQPKLSYIGHSMG--TTMFWVLLSEKPEYNDKIEVMIGMAPIA 58
L ++ IL + HS+G + + + IG+ P
Sbjct: 91 VGLRDWVNAILMIFEHFKFQSYLLCVHSIGGFAALQIMNQ-----SSKACLGFIGLEPTT 145
Query: 59 FINHVKSP 66
+ +
Sbjct: 146 VMIYRAGF 153
>3qit_A CURM TE, polyketide synthase; thioesterase, alpha/beta hydrolase,
decarboxylase, sulfate elimination, terminal alkene
production; 1.68A {Lyngbya majuscula 19L}
Length = 286
Score = 26.5 bits (59), Expect = 0.90
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 3 IYDLPVVIDYILSVTGQPKLSYIGHSMGTTMFWVLLSEKPEYNDKIEVMIGMAPIAFINH 62
+ + VI + L +GHSMG + + S +P+ ++ +++ + A +
Sbjct: 82 LAQIDRVIQEL----PDQPLLLVGHSMGAMLATAIASVRPKKIKEL-ILVELPLPAEESK 136
Query: 63 VKSPVIRFLATISDPLAVSNRFPIL 87
+S V L T D L+ + + PI
Sbjct: 137 KESAV-NQLTTCLDYLSSTPQHPIF 160
>3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A,
alternative splicing, hydrolase, phosphoprotein, serine
esterase; 2.00A {Homo sapiens} PDB: 3c5w_P
Length = 316
Score = 26.7 bits (59), Expect = 0.97
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 5 DLPVVIDYILSVTGQPKLSYIGHSMGTTMFWVLLSEKPEYNDKIEVMIGMAP 56
D+ V++ + P + IGHSMG + S + MI +
Sbjct: 96 DVGNVVEA-MYGDLPPPIMLIGHSMGGAIAVHTASSNLVPSLLGLCMIDVVE 146
>3p2m_A Possible hydrolase; alpha/beta hydrolase superfamily; 2.80A
{Mycobacterium tuberculosis}
Length = 330
Score = 26.6 bits (59), Expect = 1.0
Identities = 9/36 (25%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Query: 25 IGHSMG--TTMFWVLLSEKPEYNDKIEVMIGMAPIA 58
+G S+G T + L + P+ ++ V++ + P A
Sbjct: 151 VGMSLGGLTAI--RLAAMAPDLVGEL-VLVDVTPSA 183
>1r3d_A Conserved hypothetical protein VC1974; structural genomics,
hydrolase, NYSGXRC, NEW YORK SGX research center for
structural genomics, PSI; 1.90A {Vibrio cholerae} SCOP:
c.69.1.35
Length = 264
Score = 26.1 bits (58), Expect = 1.3
Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 5/37 (13%)
Query: 25 IGHSMG--TTMFWVLLSEKPEYNDKIEVMIGMAPIAF 59
+G+S+G M L++ + I + F
Sbjct: 89 VGYSLGGRLIM--HGLAQGAFSRLNLRGAI-IEGGHF 122
>3ds8_A LIN2722 protein; unkonwn function, structural genomics, PSI, MCSG,
P structure initiative; 1.80A {Listeria innocua}
Length = 254
Score = 25.9 bits (56), Expect = 1.9
Identities = 7/45 (15%), Positives = 16/45 (35%)
Query: 6 LPVVIDYILSVTGQPKLSYIGHSMGTTMFWVLLSEKPEYNDKIEV 50
L + ++ + S G ++ +GHS G + +
Sbjct: 80 LKIAMEDLKSRYGFTQMDGVGHSNGGLALTYYAEDYAGDKTVPTL 124
>2y6u_A Peroxisomal membrane protein LPX1; hydrolase, putative esterase,
putative lipase; HET: CME CSO; 1.90A {Saccharomyces
cerevisiae} PDB: 2y6v_A*
Length = 398
Score = 25.5 bits (55), Expect = 2.3
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 25 IGHSMGTTMFWVLLSEKPEYNDKIEVMIGMAPIAF 59
IGHSMG +P ++I + P+
Sbjct: 142 IGHSMGGFQALACDVLQPN---LFHLLILIEPVVI 173
>3fle_A SE_1780 protein; structural genomics, APC61035.1, PSI-2, protein
structure in midwest center for structural genomics,
MCSG; 2.01A {Staphylococcus epidermidis}
Length = 249
Score = 25.1 bits (54), Expect = 3.4
Identities = 10/52 (19%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 6 LPVVIDYILSVTGQPKLSYIGHSMG--TTMFWVLLSEKPEYNDKIEVMIGMA 55
+ V+ + S G + +++GHSMG + F++ + +++ + +A
Sbjct: 83 IKEVLSQLKSQFGIQQFNFVGHSMGNMSFAFYMKNYGDDRHLPQLKKEVNIA 134
>3hju_A Monoglyceride lipase; alpha/beta hydrolase, hydrolase, serine
esterase; 2.20A {Homo sapiens}
Length = 342
Score = 24.3 bits (53), Expect = 6.2
Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 8/75 (10%)
Query: 3 IYDLPVVIDYILSVTGQPKLSYIGHSMG--TTMFWVLLSEKPEYNDKIEVMIGMAPIAFI 60
+ D+ +D + + +GHSMG + E M+ ++P+
Sbjct: 115 VRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAA-----ERPGHFAGMVLISPLVLA 169
Query: 61 N-HVKSPVIRFLATI 74
N + A +
Sbjct: 170 NPESATTFKVLAAKV 184
>1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 1.60A {Thermus thermophilus} SCOP:
c.69.1.27
Length = 238
Score = 24.3 bits (52), Expect = 6.5
Identities = 12/60 (20%), Positives = 19/60 (31%)
Query: 21 KLSYIGHSMGTTMFWVLLSEKPEYNDKIEVMIGMAPIAFINHVKSPVIRFLATISDPLAV 80
L G S+G + +LL+E + + P+ LA P A
Sbjct: 106 PLFLAGGSLGAFVAHLLLAEGFRPRGVLAFIGSGFPMKLPQGQVVEDPGVLALYQAPPAT 165
>1uxo_A YDEN protein; hydrolase, A/B hydrolase, esterase, PSI, protein
structure initiative, MCSG, midwest center for
structural genomics; 1.8A {Bacillus subtilis} SCOP:
c.69.1.31
Length = 192
Score = 23.9 bits (51), Expect = 7.5
Identities = 5/32 (15%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 25 IGHSMGTTMFWVLLSEKPEYNDKIEVMIGMAP 56
+ HS+G L + +I ++
Sbjct: 70 VAHSLGCPAILRFLEHLQLR-AALGGIILVSG 100
>3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga
maritima} PDB: 3doi_A
Length = 380
Score = 23.9 bits (51), Expect = 8.9
Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 6/76 (7%)
Query: 1 MGIYDLPVVIDYILSVTGQP-----KLSYIGHSMGTTMFWVLLSEKPEYNDKIEVMIGMA 55
L VI I + + ++ G SMG W + E PE + G
Sbjct: 239 NPEKPLLAVIKIIRKLLDEYNIDENRIYITGLSMGGYGTWTAIMEFPELFAAAIPICGGG 298
Query: 56 PIAFINHVKS-PVIRF 70
++ + +K P+ F
Sbjct: 299 DVSKVERIKDIPIWVF 314
>3kxp_A Alpha-(N-acetylaminomethylene)succinic acid hydrolase; alpha/beta
hydrolase, PLP degradation, E-2-
(acetamidomethylene)succinate; 2.26A {Mesorhizobium
loti}
Length = 314
Score = 23.9 bits (52), Expect = 9.0
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 25 IGHSMGTTMFWVLLSEKPEYNDKIEVMIGMAP 56
+GHS+G ++ P+ + V I P
Sbjct: 139 VGHSLGARNSVTAAAKYPDLVRSV-VAIDFTP 169
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 23.9 bits (51), Expect = 9.8
Identities = 7/27 (25%), Positives = 9/27 (33%), Gaps = 13/27 (48%)
Query: 20 PKLSYI-GHSMGTTMFWVLLSEKPEYN 45
P + GHS+G EY
Sbjct: 1754 PADATFAGHSLG------------EYA 1768
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 24.0 bits (51), Expect = 9.9
Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 35/91 (38%)
Query: 4 YD----LPVVID-YILSVTGQPKLSYIGHSMGTTMFWVLLSEKPEYNDKIEVMIGMAPIA 58
+D +P +D Y S +IGH + + E+ +++ + +
Sbjct: 459 FDSDDLIPPYLDQYFYS--------HIGHHL----------KNIEHPERMTLF----RMV 496
Query: 59 FINHVKSPVIRFLAT--ISDPLAVSNRFPIL 87
F++ RFL D A + IL
Sbjct: 497 FLD------FRFLEQKIRHDSTAWNASGSIL 521
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.142 0.425
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,346,972
Number of extensions: 66161
Number of successful extensions: 233
Number of sequences better than 10.0: 1
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 39
Length of query: 87
Length of database: 6,701,793
Length adjustment: 55
Effective length of query: 32
Effective length of database: 5,166,138
Effective search space: 165316416
Effective search space used: 165316416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.6 bits)