Query psy5052
Match_columns 172
No_of_seqs 182 out of 1745
Neff 8.2
Searched_HMMs 46136
Date Sat Aug 17 00:31:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5052.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5052hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2896 MoaA Molybdenum cofact 100.0 5.5E-44 1.2E-48 288.9 18.2 170 1-172 107-277 (322)
2 PRK13361 molybdenum cofactor b 100.0 1.7E-40 3.7E-45 273.1 19.9 171 1-172 110-281 (329)
3 PLN02951 Molybderin biosynthes 100.0 2.3E-40 5.1E-45 276.1 19.6 172 1-172 155-326 (373)
4 PRK00164 moaA molybdenum cofac 100.0 6.5E-37 1.4E-41 251.9 20.2 171 1-172 114-285 (331)
5 TIGR02666 moaA molybdenum cofa 100.0 1.2E-36 2.5E-41 250.7 19.9 172 1-172 108-284 (334)
6 TIGR02668 moaA_archaeal probab 100.0 9.6E-34 2.1E-38 230.3 19.9 168 1-172 104-274 (302)
7 KOG2876|consensus 100.0 5.7E-33 1.2E-37 216.3 6.1 172 1-172 108-279 (323)
8 PF06463 Mob_synth_C: Molybden 99.9 3E-27 6.4E-32 170.0 8.9 97 75-172 1-98 (128)
9 TIGR02109 PQQ_syn_pqqE coenzym 99.7 3.8E-17 8.3E-22 135.8 12.5 86 1-88 101-188 (358)
10 PRK05301 pyrroloquinoline quin 99.7 5.7E-17 1.2E-21 135.7 12.4 86 1-88 110-197 (378)
11 TIGR03470 HpnH hopanoid biosyn 99.7 7.8E-17 1.7E-21 132.2 10.5 157 2-170 120-278 (318)
12 COG0535 Predicted Fe-S oxidore 99.6 6.7E-15 1.5E-19 120.7 13.7 97 1-99 114-212 (347)
13 PRK13758 anaerobic sulfatase-m 99.6 1.3E-15 2.8E-20 127.1 9.2 103 1-107 112-220 (370)
14 PRK14456 ribosomal RNA large s 99.6 2.1E-14 4.6E-19 119.7 10.9 107 1-108 227-341 (368)
15 PRK13745 anaerobic sulfatase-m 99.6 1.2E-14 2.6E-19 123.1 9.5 80 1-84 121-205 (412)
16 COG2100 Predicted Fe-S oxidore 99.5 1.7E-13 3.7E-18 110.5 11.3 106 1-107 210-323 (414)
17 PRK14459 ribosomal RNA large s 99.5 1.5E-13 3.3E-18 114.5 10.4 107 1-108 231-347 (373)
18 PRK13762 tRNA-modifying enzyme 99.5 5.2E-13 1.1E-17 109.8 12.5 103 3-106 177-285 (322)
19 COG0641 AslB Arylsulfatase reg 99.4 3.5E-13 7.5E-18 112.8 8.3 105 1-109 110-220 (378)
20 TIGR01290 nifB nitrogenase cof 99.4 1.6E-12 3.4E-17 111.0 12.1 85 1-86 129-229 (442)
21 PRK14468 ribosomal RNA large s 99.4 3.7E-12 7.9E-17 105.6 10.4 105 2-107 197-308 (343)
22 PRK14460 ribosomal RNA large s 99.3 7.6E-12 1.6E-16 104.1 10.3 106 1-107 208-319 (354)
23 PRK14455 ribosomal RNA large s 99.3 1E-11 2.2E-16 103.4 10.5 104 3-107 214-324 (356)
24 TIGR00048 radical SAM enzyme, 99.3 1.6E-11 3.4E-16 102.2 11.0 105 2-107 209-320 (355)
25 PRK14466 ribosomal RNA large s 99.3 4.6E-11 9.9E-16 98.7 10.5 100 8-108 208-313 (345)
26 PRK14469 ribosomal RNA large s 99.2 7E-11 1.5E-15 98.1 10.7 86 1-87 201-293 (343)
27 PRK14470 ribosomal RNA large s 99.2 8.1E-11 1.7E-15 97.3 10.4 102 3-106 199-306 (336)
28 PRK09240 thiH thiamine biosynt 99.2 7.3E-11 1.6E-15 98.9 9.5 104 1-107 169-284 (371)
29 PRK14463 ribosomal RNA large s 99.2 1.9E-10 4.2E-15 95.5 11.0 100 8-107 208-312 (349)
30 PRK14457 ribosomal RNA large s 99.2 2.1E-10 4.6E-15 95.1 10.3 99 8-107 213-317 (345)
31 PRK14462 ribosomal RNA large s 99.2 2.4E-10 5.3E-15 95.0 10.6 99 8-107 221-325 (356)
32 TIGR03278 methan_mark_10 putat 99.1 8E-10 1.7E-14 93.3 12.5 105 1-107 124-238 (404)
33 TIGR02493 PFLA pyruvate format 99.1 4.3E-10 9.2E-15 88.3 10.1 82 5-88 118-203 (235)
34 PRK11145 pflA pyruvate formate 99.1 5.2E-10 1.1E-14 88.5 10.0 79 5-86 123-203 (246)
35 PRK14453 chloramphenicol/florf 99.1 6.2E-10 1.3E-14 92.4 10.1 99 8-107 206-317 (347)
36 TIGR02494 PFLE_PFLC glycyl-rad 99.1 4E-10 8.6E-15 91.4 8.2 84 5-90 176-264 (295)
37 PRK07094 biotin synthase; Prov 99.1 1.8E-09 3.9E-14 88.7 12.0 104 1-105 135-240 (323)
38 PRK14461 ribosomal RNA large s 99.1 8.8E-10 1.9E-14 91.6 10.1 100 8-108 229-340 (371)
39 TIGR00433 bioB biotin syntheta 99.1 3.2E-09 7E-14 86.0 13.2 104 1-106 129-233 (296)
40 smart00729 Elp3 Elongator prot 99.1 1.3E-09 2.9E-14 82.5 10.2 88 1-89 106-196 (216)
41 PRK06256 biotin synthase; Vali 99.0 2.2E-09 4.9E-14 88.6 10.9 103 1-105 158-261 (336)
42 PRK14454 ribosomal RNA large s 99.0 4.7E-09 1E-13 87.1 10.3 99 8-107 209-313 (342)
43 TIGR02351 thiH thiazole biosyn 99.0 4.3E-09 9.4E-14 88.1 9.9 104 1-107 168-283 (366)
44 PRK14467 ribosomal RNA large s 99.0 6.1E-09 1.3E-13 86.5 10.3 99 8-107 210-316 (348)
45 PRK14465 ribosomal RNA large s 98.9 8.1E-09 1.8E-13 85.5 10.3 98 8-107 213-316 (342)
46 PRK11194 ribosomal RNA large s 98.9 1E-08 2.2E-13 85.8 10.0 100 8-107 217-324 (372)
47 PRK10076 pyruvate formate lyas 98.9 1.9E-08 4.2E-13 78.3 9.8 82 6-89 90-174 (213)
48 COG0820 Predicted Fe-S-cluster 98.9 2E-08 4.4E-13 82.6 9.7 99 8-107 213-317 (349)
49 PRK15108 biotin synthase; Prov 98.8 5.3E-08 1.1E-12 81.0 12.2 104 1-106 142-248 (345)
50 TIGR02495 NrdG2 anaerobic ribo 98.8 2.3E-08 5E-13 76.0 8.5 71 2-74 109-183 (191)
51 PRK14464 ribosomal RNA large s 98.8 1.3E-08 2.8E-13 84.3 7.4 99 9-108 201-305 (344)
52 TIGR00539 hemN_rel putative ox 98.8 6.9E-08 1.5E-12 80.6 11.8 89 1-89 106-196 (360)
53 PF04055 Radical_SAM: Radical 98.8 2.5E-08 5.5E-13 72.5 8.2 69 1-70 96-166 (166)
54 PLN02389 biotin synthase 98.8 1.6E-07 3.4E-12 79.0 12.5 104 1-106 184-290 (379)
55 COG1964 Predicted Fe-S oxidore 98.8 2.2E-08 4.7E-13 84.2 7.0 156 1-165 161-327 (475)
56 PRK05660 HemN family oxidoredu 98.7 2.7E-07 5.8E-12 77.6 12.4 88 1-88 113-202 (378)
57 TIGR03822 AblA_like_2 lysine-2 98.7 1.3E-07 2.7E-12 78.0 10.1 94 1-107 193-289 (321)
58 cd01335 Radical_SAM Radical SA 98.7 1.7E-07 3.7E-12 69.9 9.3 88 1-89 94-185 (204)
59 TIGR03821 AblA_like_1 lysine-2 98.7 1E-07 2.3E-12 78.5 8.0 94 1-108 199-296 (321)
60 PRK08446 coproporphyrinogen II 98.6 4.2E-07 9.1E-12 75.7 10.0 88 1-88 104-193 (350)
61 PRK08599 coproporphyrinogen II 98.6 4.7E-07 1E-11 76.0 10.3 87 1-87 106-194 (377)
62 TIGR03279 cyano_FeS_chp putati 98.6 1.2E-06 2.5E-11 74.4 12.5 88 2-90 135-227 (433)
63 PRK05904 coproporphyrinogen II 98.5 2.4E-06 5.2E-11 71.3 13.3 88 1-88 109-198 (353)
64 TIGR00538 hemN oxygen-independ 98.5 1.7E-06 3.6E-11 74.5 11.8 82 1-82 157-240 (455)
65 PRK05628 coproporphyrinogen II 98.5 1.2E-06 2.5E-11 73.6 10.5 87 1-87 114-202 (375)
66 PRK08508 biotin synthase; Prov 98.5 1.5E-06 3.2E-11 70.3 10.5 100 1-105 108-210 (279)
67 TIGR01125 MiaB-like tRNA modif 98.5 3.1E-06 6.6E-11 72.3 12.4 101 1-102 238-345 (430)
68 PRK08207 coproporphyrinogen II 98.5 4.2E-06 9.1E-11 72.6 13.3 88 1-88 275-364 (488)
69 PRK05799 coproporphyrinogen II 98.5 1.5E-06 3.3E-11 72.8 10.1 88 1-88 105-194 (374)
70 PRK06267 hypothetical protein; 98.4 4.6E-06 1E-10 69.5 12.7 101 5-106 127-228 (350)
71 PRK14862 rimO ribosomal protei 98.4 3.3E-06 7.1E-11 72.4 10.9 97 8-105 258-359 (440)
72 PRK09249 coproporphyrinogen II 98.4 2E-06 4.4E-11 73.9 9.6 83 1-83 157-241 (453)
73 PRK13347 coproporphyrinogen II 98.4 3E-06 6.5E-11 72.9 10.0 83 1-83 158-242 (453)
74 TIGR00238 KamA family protein. 98.4 2.8E-06 6.2E-11 70.3 9.1 95 1-108 216-313 (331)
75 PRK08208 coproporphyrinogen II 98.3 9.3E-06 2E-10 69.4 12.4 88 1-88 147-236 (430)
76 COG0731 Fe-S oxidoreductases [ 98.3 3.1E-06 6.7E-11 68.6 8.7 70 6-76 130-205 (296)
77 PRK14334 (dimethylallyl)adenos 98.3 1.1E-05 2.3E-10 69.3 12.1 99 4-103 245-348 (440)
78 TIGR01212 radical SAM protein, 98.3 8.8E-06 1.9E-10 66.5 11.0 105 2-107 133-246 (302)
79 COG1180 PflA Pyruvate-formate 98.3 9E-06 2E-10 65.2 10.8 84 6-91 135-222 (260)
80 PRK06294 coproporphyrinogen II 98.3 7.6E-06 1.6E-10 68.7 10.5 87 1-87 109-197 (370)
81 TIGR03699 mena_SCO4550 menaqui 98.3 6.9E-06 1.5E-10 68.1 9.7 104 1-105 149-259 (340)
82 COG1625 Fe-S oxidoreductase, r 98.3 5.9E-06 1.3E-10 69.3 9.1 86 1-87 131-218 (414)
83 TIGR02026 BchE magnesium-proto 98.3 8.3E-06 1.8E-10 71.0 10.5 86 1-87 293-380 (497)
84 TIGR03471 HpnJ hopanoid biosyn 98.3 8.3E-06 1.8E-10 70.4 10.2 86 1-87 293-380 (472)
85 TIGR03551 F420_cofH 7,8-dideme 98.2 8.6E-06 1.9E-10 67.7 8.9 104 1-105 147-261 (343)
86 PRK07379 coproporphyrinogen II 98.2 1.7E-05 3.6E-10 67.3 10.3 87 1-87 121-209 (400)
87 PLN02428 lipoic acid synthase 98.1 2.7E-05 5.9E-10 64.7 10.3 101 1-104 201-306 (349)
88 PRK14338 (dimethylallyl)adenos 98.1 4.6E-05 9.9E-10 65.8 11.6 84 4-88 263-350 (459)
89 COG0502 BioB Biotin synthase a 98.0 6.2E-05 1.3E-09 62.1 10.7 103 1-106 150-255 (335)
90 TIGR01579 MiaB-like-C MiaB-lik 98.0 0.0001 2.2E-09 62.7 12.3 102 2-104 242-350 (414)
91 TIGR00089 RNA modification enz 98.0 8.3E-05 1.8E-09 63.5 11.4 99 1-100 242-347 (429)
92 PTZ00413 lipoate synthase; Pro 98.0 8.2E-05 1.8E-09 62.3 10.6 101 1-104 248-354 (398)
93 TIGR03820 lys_2_3_AblA lysine- 98.0 4.8E-05 1E-09 64.7 9.3 95 1-109 212-312 (417)
94 PRK08898 coproporphyrinogen II 98.0 0.00016 3.4E-09 61.3 12.4 87 1-88 128-216 (394)
95 PRK14331 (dimethylallyl)adenos 97.9 0.00014 3.1E-09 62.3 11.3 99 2-101 249-354 (437)
96 TIGR03700 mena_SCO4494 putativ 97.9 7.2E-05 1.6E-09 62.4 9.1 104 1-105 156-268 (351)
97 PRK14325 (dimethylallyl)adenos 97.9 0.00018 3.9E-09 61.8 11.6 99 2-101 253-358 (444)
98 PRK09058 coproporphyrinogen II 97.9 0.00011 2.3E-09 63.3 10.2 87 1-87 169-257 (449)
99 PRK14335 (dimethylallyl)adenos 97.9 0.00031 6.6E-09 60.6 12.9 100 4-104 266-370 (455)
100 TIGR00423 radical SAM domain p 97.9 0.00011 2.3E-09 60.2 9.1 105 1-106 113-227 (309)
101 PRK06582 coproporphyrinogen II 97.8 0.00022 4.7E-09 60.4 10.1 86 1-87 117-204 (390)
102 PRK09057 coproporphyrinogen II 97.8 0.00022 4.7E-09 60.1 10.0 86 1-87 110-197 (380)
103 TIGR01574 miaB-methiolase tRNA 97.8 0.00048 1E-08 59.1 11.9 88 1-89 250-343 (438)
104 TIGR01210 conserved hypothetic 97.8 0.00051 1.1E-08 56.5 11.4 86 1-87 123-215 (313)
105 PRK14340 (dimethylallyl)adenos 97.8 0.00052 1.1E-08 59.1 11.8 96 4-100 256-357 (445)
106 PRK14339 (dimethylallyl)adenos 97.7 0.00058 1.3E-08 58.3 11.9 99 5-104 239-342 (420)
107 PRK14330 (dimethylallyl)adenos 97.7 0.00063 1.4E-08 58.3 11.9 98 2-100 244-349 (434)
108 TIGR00510 lipA lipoate synthas 97.7 0.00035 7.6E-09 57.2 9.8 100 1-103 162-265 (302)
109 PRK14332 (dimethylallyl)adenos 97.7 0.00076 1.7E-08 58.1 12.2 100 1-101 254-361 (449)
110 PRK14326 (dimethylallyl)adenos 97.7 0.00066 1.4E-08 59.3 11.8 88 1-89 260-353 (502)
111 TIGR01211 ELP3 histone acetylt 97.7 0.00074 1.6E-08 59.2 12.0 105 1-108 212-329 (522)
112 COG1533 SplB DNA repair photol 97.6 0.00059 1.3E-08 55.8 10.1 76 3-79 140-217 (297)
113 PRK14327 (dimethylallyl)adenos 97.6 0.0011 2.4E-08 58.0 12.3 99 1-100 315-420 (509)
114 PRK14328 (dimethylallyl)adenos 97.6 0.00083 1.8E-08 57.7 11.5 97 2-99 251-354 (439)
115 cd03174 DRE_TIM_metallolyase D 97.6 0.00084 1.8E-08 53.3 10.6 101 1-110 83-189 (265)
116 PRK14329 (dimethylallyl)adenos 97.6 0.0012 2.7E-08 57.1 12.3 95 5-100 282-382 (467)
117 PRK14333 (dimethylallyl)adenos 97.6 0.00097 2.1E-08 57.4 11.4 96 5-101 264-364 (448)
118 TIGR01578 MiaB-like-B MiaB-lik 97.6 0.002 4.3E-08 55.1 13.0 83 6-89 243-329 (420)
119 PRK14337 (dimethylallyl)adenos 97.6 0.0016 3.4E-08 56.1 12.4 97 4-101 257-358 (446)
120 PRK09613 thiH thiamine biosynt 97.6 0.001 2.2E-08 57.6 10.8 103 1-105 186-301 (469)
121 PRK14336 (dimethylallyl)adenos 97.5 0.0017 3.6E-08 55.5 11.7 97 4-101 232-334 (418)
122 PRK12928 lipoyl synthase; Prov 97.5 0.0011 2.3E-08 54.1 9.3 101 1-104 159-263 (290)
123 COG0635 HemN Coproporphyrinoge 97.4 0.0017 3.6E-08 55.5 10.0 83 1-83 143-227 (416)
124 PRK06245 cofG FO synthase subu 97.4 0.0016 3.4E-08 53.9 9.5 103 1-105 121-232 (336)
125 PRK08445 hypothetical protein; 97.2 0.0026 5.6E-08 53.1 9.0 75 1-76 150-226 (348)
126 TIGR03550 F420_cofG 7,8-dideme 97.2 0.0022 4.9E-08 52.8 8.5 103 1-105 116-228 (322)
127 PRK08444 hypothetical protein; 97.2 0.003 6.4E-08 52.9 9.2 104 1-105 157-267 (353)
128 PRK05926 hypothetical protein; 97.2 0.0013 2.8E-08 55.4 6.8 85 1-86 175-262 (370)
129 PRK07360 FO synthase subunit 2 97.2 0.0034 7.3E-08 52.8 9.3 85 1-86 169-256 (371)
130 COG1032 Fe-S oxidoreductase [E 97.1 0.0071 1.5E-07 51.7 10.6 88 1-89 306-400 (490)
131 PRK05481 lipoyl synthase; Prov 97.0 0.017 3.8E-07 47.0 11.5 98 1-101 151-252 (289)
132 PRK05927 hypothetical protein; 96.3 0.029 6.4E-07 46.9 8.6 104 1-105 153-265 (350)
133 COG2516 Biotin synthase-relate 96.2 0.034 7.5E-07 45.6 8.4 100 2-101 138-242 (339)
134 PRK08629 coproporphyrinogen II 96.1 0.052 1.1E-06 46.7 9.3 85 1-87 152-241 (433)
135 COG5014 Predicted Fe-S oxidore 96.0 0.023 5.1E-07 42.9 5.8 64 8-74 147-213 (228)
136 COG1242 Predicted Fe-S oxidore 95.7 0.22 4.8E-06 40.3 10.5 98 9-107 146-251 (312)
137 cd07939 DRE_TIM_NifV Streptomy 95.2 0.34 7.3E-06 38.6 10.5 102 2-110 79-182 (259)
138 COG0621 MiaB 2-methylthioadeni 95.1 0.3 6.5E-06 42.1 10.4 92 7-99 256-352 (437)
139 COG1243 ELP3 Histone acetyltra 95.0 0.11 2.4E-06 44.8 7.2 106 1-109 204-322 (515)
140 COG2108 Uncharacterized conser 95.0 0.088 1.9E-06 43.4 6.4 65 1-76 130-194 (353)
141 cd07944 DRE_TIM_HOA_like 4-hyd 94.9 0.79 1.7E-05 36.8 11.7 76 28-110 106-181 (266)
142 PRK11858 aksA trans-homoaconit 94.8 0.42 9.2E-06 40.4 10.4 74 2-76 85-160 (378)
143 cd07948 DRE_TIM_HCS Saccharomy 94.5 0.89 1.9E-05 36.5 11.2 102 2-110 81-184 (262)
144 PRK09234 fbiC FO synthase; Rev 94.5 0.26 5.6E-06 45.9 9.0 84 1-85 634-720 (843)
145 TIGR02090 LEU1_arch isopropylm 94.5 0.61 1.3E-05 39.2 10.5 74 2-76 81-156 (363)
146 COG1244 Predicted Fe-S oxidore 94.5 0.52 1.1E-05 39.0 9.6 99 8-110 166-282 (358)
147 COG0320 LipA Lipoate synthase 94.4 0.41 8.8E-06 38.7 8.7 100 2-104 169-272 (306)
148 PF13186 SPASM: Iron-sulfur cl 94.0 0.035 7.7E-07 33.9 1.7 16 149-164 5-20 (64)
149 cd07938 DRE_TIM_HMGL 3-hydroxy 93.9 1.1 2.5E-05 36.1 10.6 101 2-110 83-192 (274)
150 PF00682 HMGL-like: HMGL-like 93.8 0.19 4.1E-06 39.3 6.0 103 2-111 77-181 (237)
151 COG1509 KamA Lysine 2,3-aminom 93.8 0.43 9.4E-06 39.9 8.0 73 31-107 236-311 (369)
152 PRK00955 hypothetical protein; 93.6 0.37 8E-06 43.3 7.9 79 8-87 436-521 (620)
153 cd07945 DRE_TIM_CMS Leptospira 93.6 1.3 2.7E-05 36.0 10.5 101 2-110 84-190 (280)
154 PRK01254 hypothetical protein; 92.8 0.78 1.7E-05 41.6 8.7 78 8-86 515-599 (707)
155 PRK09234 fbiC FO synthase; Rev 92.7 0.64 1.4E-05 43.4 8.3 103 1-105 183-297 (843)
156 PLN02746 hydroxymethylglutaryl 92.6 2 4.4E-05 36.0 10.4 100 2-110 131-240 (347)
157 cd07941 DRE_TIM_LeuA3 Desulfob 92.5 2 4.4E-05 34.5 10.1 102 2-110 88-194 (273)
158 TIGR02660 nifV_homocitr homoci 92.2 1.9 4.2E-05 36.2 10.1 74 2-76 82-157 (365)
159 PRK05692 hydroxymethylglutaryl 92.0 2.8 6.1E-05 34.1 10.4 102 2-110 89-198 (287)
160 cd07940 DRE_TIM_IPMS 2-isoprop 91.7 2.3 4.9E-05 34.0 9.5 97 6-110 87-186 (268)
161 PRK08195 4-hyroxy-2-oxovalerat 91.2 5.6 0.00012 33.1 11.6 88 3-109 99-186 (337)
162 cd07937 DRE_TIM_PC_TC_5S Pyruv 90.6 7.2 0.00016 31.4 11.5 75 29-110 116-192 (275)
163 COG1856 Uncharacterized homolo 90.6 7.3 0.00016 30.9 11.3 108 1-111 106-220 (275)
164 cd07943 DRE_TIM_HOA 4-hydroxy- 90.6 4.6 9.9E-05 32.2 10.3 89 3-110 96-184 (263)
165 TIGR03217 4OH_2_O_val_ald 4-hy 90.1 7.7 0.00017 32.3 11.5 88 3-109 98-185 (333)
166 KOG2900|consensus 90.0 0.29 6.3E-06 39.2 2.8 106 1-108 185-295 (380)
167 COG1060 ThiH Thiamine biosynth 89.9 4.1 8.8E-05 34.5 9.8 104 1-105 167-279 (370)
168 PRK00915 2-isopropylmalate syn 89.1 5 0.00011 35.4 10.1 74 2-76 89-164 (513)
169 PRK09389 (R)-citramalate synth 88.8 7 0.00015 34.3 10.7 75 2-77 83-159 (488)
170 KOG0256|consensus 88.3 2 4.4E-05 36.8 6.7 124 4-148 191-325 (471)
171 cd06543 GH18_PF-ChiA-like PF-C 86.5 3.5 7.6E-05 33.7 7.2 78 2-87 101-181 (294)
172 TIGR03365 Bsubt_queE 7-cyano-7 86.2 4.2 9E-05 32.0 7.3 44 5-56 118-161 (238)
173 cd07947 DRE_TIM_Re_CS Clostrid 85.5 11 0.00023 30.6 9.4 73 2-76 84-164 (279)
174 PF10126 Nit_Regul_Hom: Unchar 84.9 4.8 0.0001 27.9 6.0 64 1-68 23-87 (110)
175 COG0826 Collagenase and relate 83.2 4.8 0.0001 33.7 6.6 70 3-76 24-94 (347)
176 cd07945 DRE_TIM_CMS Leptospira 83.2 1.4 3.1E-05 35.7 3.4 79 2-80 30-134 (280)
177 KOG1160|consensus 81.9 3.9 8.5E-05 35.4 5.6 65 6-71 403-470 (601)
178 PRK12344 putative alpha-isopro 81.7 16 0.00036 32.3 9.7 74 2-76 95-173 (524)
179 TIGR00977 LeuA_rel 2-isopropyl 79.9 33 0.00072 30.4 11.0 102 2-110 91-197 (526)
180 PRK14040 oxaloacetate decarbox 79.9 17 0.00036 32.8 9.2 89 2-109 107-197 (593)
181 COG0656 ARA1 Aldo/keto reducta 78.9 16 0.00035 29.7 8.1 74 1-86 95-170 (280)
182 PF07745 Glyco_hydro_53: Glyco 78.9 5.1 0.00011 33.4 5.3 48 1-54 33-80 (332)
183 PLN03228 methylthioalkylmalate 78.1 27 0.00058 30.9 9.8 100 3-110 179-282 (503)
184 cd02810 DHOD_DHPD_FMN Dihydroo 77.7 14 0.0003 29.6 7.5 71 2-77 121-192 (289)
185 PF01261 AP_endonuc_2: Xylose 77.2 26 0.00056 25.9 8.5 69 1-77 4-87 (213)
186 KOG2672|consensus 77.2 8 0.00017 31.6 5.7 98 2-101 211-312 (360)
187 COG4130 Predicted sugar epimer 76.8 35 0.00076 27.0 9.4 94 2-107 27-126 (272)
188 TIGR02631 xylA_Arthro xylose i 76.5 30 0.00066 29.3 9.4 74 29-108 113-204 (382)
189 PF09370 TIM-br_sig_trns: TIM- 76.3 14 0.00029 29.9 6.8 96 1-109 104-205 (268)
190 TIGR00973 leuA_bact 2-isopropy 76.0 35 0.00075 30.0 9.9 100 3-110 87-189 (494)
191 PF12646 DUF3783: Domain of un 75.3 16 0.00034 22.2 6.1 51 52-109 3-54 (58)
192 PRK12677 xylose isomerase; Pro 73.4 44 0.00096 28.3 9.7 74 29-108 112-203 (384)
193 COG0119 LeuA Isopropylmalate/h 73.4 57 0.0012 28.0 10.4 102 1-110 85-189 (409)
194 COG4075 Uncharacterized conser 72.1 23 0.0005 24.2 6.1 65 1-72 23-88 (110)
195 PRK15452 putative protease; Pr 71.5 34 0.00073 29.7 8.6 68 3-76 21-91 (443)
196 PF01890 CbiG_C: Cobalamin syn 71.1 18 0.0004 25.4 5.9 51 29-80 13-64 (121)
197 PF00682 HMGL-like: HMGL-like 71.0 12 0.00026 29.0 5.4 75 1-79 23-126 (237)
198 cd04735 OYE_like_4_FMN Old yel 70.5 62 0.0013 27.0 11.1 72 2-76 154-250 (353)
199 TIGR02090 LEU1_arch isopropylm 70.4 10 0.00022 31.8 5.2 79 1-79 31-130 (363)
200 PRK08091 ribulose-phosphate 3- 70.3 28 0.00062 27.4 7.3 37 32-69 104-140 (228)
201 PRK15447 putative protease; Pr 70.0 34 0.00074 27.9 8.0 61 2-71 25-86 (301)
202 cd04740 DHOD_1B_like Dihydroor 69.9 24 0.00051 28.5 7.1 69 2-76 112-181 (296)
203 TIGR00222 panB 3-methyl-2-oxob 69.4 37 0.0008 27.4 7.9 51 31-82 116-181 (263)
204 COG0011 Uncharacterized conser 69.2 34 0.00073 23.4 6.6 73 30-107 20-97 (100)
205 cd00477 FTHFS Formyltetrahydro 69.2 12 0.00026 33.0 5.4 52 29-81 341-392 (524)
206 PRK11172 dkgB 2,5-diketo-D-glu 69.0 36 0.00078 27.0 7.9 38 1-44 83-121 (267)
207 COG3473 Maleate cis-trans isom 68.7 54 0.0012 25.8 8.3 77 1-81 63-151 (238)
208 cd07939 DRE_TIM_NifV Streptomy 67.7 17 0.00037 28.8 5.7 79 1-79 29-128 (259)
209 TIGR00620 sporelyase spore pho 67.6 17 0.00036 28.1 5.4 43 7-52 48-91 (199)
210 KOG2535|consensus 67.5 10 0.00022 32.0 4.4 103 3-108 244-359 (554)
211 smart00642 Aamy Alpha-amylase 67.5 34 0.00073 25.3 6.9 53 27-79 15-88 (166)
212 COG2759 MIS1 Formyltetrahydrof 67.2 18 0.0004 31.6 6.0 58 29-87 354-411 (554)
213 PF10566 Glyco_hydro_97: Glyco 67.2 22 0.00048 28.8 6.2 50 29-82 30-94 (273)
214 PLN02746 hydroxymethylglutaryl 67.1 28 0.0006 29.3 7.0 79 1-79 77-180 (347)
215 cd02801 DUS_like_FMN Dihydrour 67.0 51 0.0011 25.2 8.2 72 2-76 77-153 (231)
216 PRK07027 cobalamin biosynthesi 66.9 12 0.00027 26.5 4.3 51 29-80 15-66 (126)
217 PRK14041 oxaloacetate decarbox 66.8 51 0.0011 28.9 8.8 89 3-110 106-196 (467)
218 cd03174 DRE_TIM_metallolyase D 64.4 57 0.0012 25.4 8.2 80 1-80 28-134 (265)
219 TIGR00262 trpA tryptophan synt 64.4 42 0.00091 26.8 7.3 79 2-85 34-126 (256)
220 PF08032 SpoU_sub_bind: RNA 2' 64.0 25 0.00055 21.8 5.0 43 35-80 6-49 (76)
221 PRK11858 aksA trans-homoaconit 63.8 17 0.00036 30.8 5.2 76 1-80 35-135 (378)
222 PRK09912 L-glyceraldehyde 3-ph 63.7 61 0.0013 26.8 8.5 37 1-45 124-161 (346)
223 cd07948 DRE_TIM_HCS Saccharomy 63.2 18 0.0004 28.9 5.1 80 1-80 31-131 (262)
224 PF01268 FTHFS: Formate--tetra 62.6 9.3 0.0002 34.0 3.5 50 30-80 357-406 (557)
225 PRK13507 formate--tetrahydrofo 62.5 31 0.00067 30.9 6.6 51 30-81 387-437 (587)
226 TIGR00737 nifR3_yhdG putative 61.3 80 0.0017 25.8 8.7 75 2-77 85-163 (319)
227 cd02931 ER_like_FMN Enoate red 60.7 48 0.001 28.0 7.4 72 2-76 160-267 (382)
228 cd06660 Aldo_ket_red Aldo-keto 59.5 59 0.0013 25.6 7.5 36 2-44 104-140 (285)
229 smart00642 Aamy Alpha-amylase 59.4 24 0.00052 26.1 4.9 55 1-56 28-94 (166)
230 TIGR03849 arch_ComA phosphosul 59.4 79 0.0017 25.1 7.9 67 36-107 76-142 (237)
231 PLN02607 1-aminocyclopropane-1 58.7 1E+02 0.0022 26.6 9.2 69 4-81 165-240 (447)
232 cd00959 DeoC 2-deoxyribose-5-p 58.3 45 0.00099 25.4 6.4 46 29-76 99-146 (203)
233 PRK09856 fructoselysine 3-epim 58.2 89 0.0019 24.5 8.9 74 29-108 88-171 (275)
234 PRK00311 panB 3-methyl-2-oxobu 58.1 46 0.00099 26.8 6.5 48 32-81 118-181 (264)
235 PF00331 Glyco_hydro_10: Glyco 58.0 70 0.0015 26.3 7.8 53 30-82 187-241 (320)
236 COG0821 gcpE 1-hydroxy-2-methy 57.6 22 0.00047 29.8 4.6 72 1-79 45-128 (361)
237 cd07944 DRE_TIM_HOA_like 4-hyd 57.4 98 0.0021 24.7 8.6 43 34-79 85-127 (266)
238 COG1809 (2R)-phospho-3-sulfola 57.0 60 0.0013 25.7 6.7 70 33-107 92-161 (258)
239 TIGR00423 radical SAM domain p 56.8 25 0.00053 28.7 4.9 52 29-80 37-88 (309)
240 KOG0258|consensus 56.8 46 0.001 28.7 6.5 50 25-77 194-251 (475)
241 cd02930 DCR_FMN 2,4-dienoyl-Co 56.4 67 0.0014 26.7 7.5 70 2-76 147-239 (353)
242 TIGR00036 dapB dihydrodipicoli 56.0 34 0.00073 27.4 5.5 46 29-78 77-122 (266)
243 TIGR01108 oadA oxaloacetate de 55.9 1.1E+02 0.0025 27.5 9.2 73 31-110 118-192 (582)
244 PRK11815 tRNA-dihydrouridine s 54.9 37 0.0008 28.2 5.7 75 2-77 87-167 (333)
245 PRK13523 NADPH dehydrogenase N 54.8 73 0.0016 26.5 7.5 70 2-76 152-242 (337)
246 cd04733 OYE_like_2_FMN Old yel 54.8 59 0.0013 26.8 6.9 72 2-76 159-251 (338)
247 PRK09121 5-methyltetrahydropte 54.7 43 0.00094 27.9 6.1 72 1-82 165-252 (339)
248 PRK07259 dihydroorotate dehydr 54.5 55 0.0012 26.4 6.6 68 2-76 114-184 (301)
249 cd04747 OYE_like_5_FMN Old yel 54.1 74 0.0016 26.8 7.4 73 2-77 154-251 (361)
250 TIGR00559 pdxJ pyridoxine 5'-p 53.4 46 0.001 26.4 5.7 56 16-82 89-150 (237)
251 PF13727 CoA_binding_3: CoA-bi 53.1 25 0.00054 25.2 4.1 26 55-80 149-174 (175)
252 PF06415 iPGM_N: BPG-independe 52.8 1.1E+02 0.0024 24.0 9.1 73 30-108 13-89 (223)
253 TIGR02660 nifV_homocitr homoci 52.7 25 0.00054 29.5 4.4 79 1-79 32-131 (365)
254 cd00019 AP2Ec AP endonuclease 52.2 57 0.0012 25.8 6.3 69 2-76 20-100 (279)
255 PF12646 DUF3783: Domain of un 52.2 48 0.001 20.0 4.5 36 31-68 12-48 (58)
256 PF15608 PELOTA_1: PELOTA RNA 51.3 19 0.00041 24.7 2.8 34 53-86 59-92 (100)
257 cd02803 OYE_like_FMN_family Ol 51.2 68 0.0015 26.1 6.7 73 2-76 151-243 (327)
258 cd07947 DRE_TIM_Re_CS Clostrid 51.1 32 0.00069 27.9 4.6 51 30-80 73-134 (279)
259 PRK00507 deoxyribose-phosphate 50.9 75 0.0016 24.8 6.6 47 28-76 103-151 (221)
260 PRK09282 pyruvate carboxylase 50.7 1.4E+02 0.0029 27.1 8.9 74 30-110 122-197 (592)
261 PRK08255 salicylyl-CoA 5-hydro 50.6 78 0.0017 29.4 7.6 72 2-76 561-653 (765)
262 cd07940 DRE_TIM_IPMS 2-isoprop 50.5 43 0.00093 26.7 5.3 79 1-79 29-132 (268)
263 PRK13209 L-xylulose 5-phosphat 50.3 80 0.0017 24.9 6.9 71 29-107 97-176 (283)
264 cd02932 OYE_YqiM_FMN Old yello 49.4 83 0.0018 25.9 7.0 77 2-82 164-260 (336)
265 TIGR00055 uppS undecaprenyl di 49.2 72 0.0016 25.1 6.2 52 29-80 28-92 (226)
266 PF01565 FAD_binding_4: FAD bi 49.0 37 0.0008 23.7 4.3 15 149-163 123-138 (139)
267 PF13918 PLDc_3: PLD-like doma 49.0 62 0.0013 24.5 5.6 82 17-108 71-160 (177)
268 PRK13506 formate--tetrahydrofo 48.6 74 0.0016 28.6 6.7 51 30-81 379-430 (578)
269 PLN00196 alpha-amylase; Provis 48.5 36 0.00077 29.4 4.8 54 1-55 53-115 (428)
270 PF00763 THF_DHG_CYH: Tetrahyd 48.2 90 0.002 21.6 9.2 67 30-108 13-82 (117)
271 PF00150 Cellulase: Cellulase 48.1 27 0.00058 27.2 3.8 54 1-55 30-85 (281)
272 TIGR00612 ispG_gcpE 1-hydroxy- 48.0 32 0.0007 28.8 4.2 75 1-79 43-126 (346)
273 PRK12331 oxaloacetate decarbox 47.8 1.9E+02 0.0041 25.2 9.2 89 3-110 107-197 (448)
274 cd04734 OYE_like_3_FMN Old yel 47.8 1E+02 0.0022 25.6 7.3 72 2-76 151-244 (343)
275 PTZ00124 adenosine deaminase; 47.8 57 0.0012 27.5 5.8 66 3-73 117-189 (362)
276 COG0159 TrpA Tryptophan syntha 47.6 1.2E+02 0.0025 24.6 7.3 84 1-85 40-133 (265)
277 PF01408 GFO_IDH_MocA: Oxidore 46.9 37 0.0008 22.8 3.9 17 59-75 98-114 (120)
278 TIGR01856 hisJ_fam histidinol 46.7 33 0.00072 27.0 4.1 44 62-109 186-229 (253)
279 PRK12330 oxaloacetate decarbox 46.7 1.9E+02 0.0041 25.7 8.9 74 30-110 123-198 (499)
280 PRK14830 undecaprenyl pyrophos 46.5 91 0.002 24.9 6.5 52 29-80 51-115 (251)
281 PLN02759 Formate--tetrahydrofo 46.3 77 0.0017 28.8 6.5 50 30-80 436-486 (637)
282 COG2248 Predicted hydrolase (m 46.1 63 0.0014 26.2 5.4 57 27-83 221-279 (304)
283 PRK00366 ispG 4-hydroxy-3-meth 45.8 46 0.001 28.1 4.8 73 1-79 51-135 (360)
284 PRK14847 hypothetical protein; 45.8 70 0.0015 26.8 5.9 71 4-75 122-202 (333)
285 PRK13111 trpA tryptophan synth 45.3 68 0.0015 25.7 5.7 76 2-80 36-123 (258)
286 PRK13505 formate--tetrahydrofo 45.0 1.2E+02 0.0025 27.3 7.4 48 30-79 358-406 (557)
287 PF14871 GHL6: Hypothetical gl 44.8 52 0.0011 23.5 4.5 52 1-55 9-67 (132)
288 PF00809 Pterin_bind: Pterin b 44.8 17 0.00036 28.1 2.0 18 63-80 105-122 (210)
289 TIGR00126 deoC deoxyribose-pho 44.7 97 0.0021 24.0 6.3 47 28-76 99-147 (211)
290 cd07937 DRE_TIM_PC_TC_5S Pyruv 44.5 1.6E+02 0.0036 23.5 9.6 44 33-79 93-136 (275)
291 PRK05678 succinyl-CoA syntheta 44.3 89 0.0019 25.5 6.3 46 29-77 74-119 (291)
292 PF03740 PdxJ: Pyridoxal phosp 44.3 1.4E+02 0.0031 23.7 7.1 55 17-82 91-151 (239)
293 PRK05265 pyridoxine 5'-phospha 44.2 93 0.002 24.8 6.1 56 16-82 92-153 (239)
294 cd02933 OYE_like_FMN Old yello 44.1 1.4E+02 0.003 24.8 7.5 73 2-76 162-256 (338)
295 COG0108 RibB 3,4-dihydroxy-2-b 44.1 65 0.0014 25.0 5.1 9 8-16 84-92 (203)
296 PRK12465 xylose isomerase; Pro 44.0 2E+02 0.0043 25.0 8.4 73 29-107 174-264 (445)
297 PF03659 Glyco_hydro_71: Glyco 44.0 2E+02 0.0044 24.4 9.2 49 29-77 15-63 (386)
298 PF01113 DapB_N: Dihydrodipico 44.0 27 0.00059 24.4 2.9 39 30-72 77-115 (124)
299 PTZ00386 formyl tetrahydrofola 43.9 96 0.0021 28.1 6.7 51 30-81 423-475 (625)
300 cd02742 GH20_hexosaminidase Be 43.8 1.2E+02 0.0025 24.7 6.9 49 29-77 14-88 (303)
301 PRK14189 bifunctional 5,10-met 43.6 1.8E+02 0.0039 23.7 9.6 67 30-108 16-85 (285)
302 TIGR02630 xylose_isom_A xylose 43.6 2.1E+02 0.0045 24.9 8.5 73 29-107 163-253 (434)
303 TIGR03699 mena_SCO4550 menaqui 43.6 48 0.001 27.3 4.7 50 29-78 73-122 (340)
304 COG4639 Predicted kinase [Gene 43.5 84 0.0018 23.6 5.4 75 8-86 26-108 (168)
305 PRK14190 bifunctional 5,10-met 43.3 1.8E+02 0.0039 23.7 9.5 67 30-108 16-85 (284)
306 TIGR00542 hxl6Piso_put hexulos 43.1 1.2E+02 0.0025 24.0 6.8 74 1-79 61-151 (279)
307 CHL00200 trpA tryptophan synth 43.0 1E+02 0.0022 24.8 6.3 80 1-85 38-130 (263)
308 PF00128 Alpha-amylase: Alpha 42.6 24 0.00053 27.7 2.8 54 1-55 13-75 (316)
309 PRK09389 (R)-citramalate synth 42.5 43 0.00093 29.4 4.4 79 1-79 33-132 (488)
310 PF00128 Alpha-amylase: Alpha 42.5 56 0.0012 25.6 4.8 52 28-79 1-70 (316)
311 PRK05286 dihydroorotate dehydr 42.4 83 0.0018 26.2 5.9 45 29-76 193-240 (344)
312 PF13671 AAA_33: AAA domain; P 42.2 98 0.0021 21.3 5.6 48 32-83 58-105 (143)
313 PRK14838 undecaprenyl pyrophos 42.1 97 0.0021 24.7 6.0 72 7-80 12-101 (242)
314 PRK06852 aldolase; Validated 42.0 1.8E+02 0.0039 24.0 7.7 64 6-77 135-204 (304)
315 PRK14170 bifunctional 5,10-met 41.9 1.9E+02 0.0042 23.6 9.5 67 30-108 15-84 (284)
316 PRK14847 hypothetical protein; 41.9 1.2E+02 0.0026 25.3 6.8 90 1-106 63-154 (333)
317 COG3867 Arabinogalactan endo-1 41.7 65 0.0014 26.8 5.0 52 1-54 72-126 (403)
318 KOG2463|consensus 41.6 29 0.00064 28.9 3.0 34 134-167 248-288 (376)
319 PRK14166 bifunctional 5,10-met 41.2 2E+02 0.0043 23.5 9.7 67 30-108 14-83 (282)
320 PRK14834 undecaprenyl pyrophos 40.8 1.3E+02 0.0029 24.0 6.6 72 7-80 16-107 (249)
321 TIGR01235 pyruv_carbox pyruvat 40.8 2.3E+02 0.005 27.9 9.3 74 29-109 650-731 (1143)
322 PRK14169 bifunctional 5,10-met 40.7 2E+02 0.0043 23.5 9.5 67 30-108 14-83 (282)
323 TIGR01293 Kv_beta voltage-depe 40.4 1.7E+02 0.0037 23.7 7.5 37 1-45 106-143 (317)
324 COG0813 DeoD Purine-nucleoside 40.2 1.2E+02 0.0025 24.0 6.0 69 4-75 99-176 (236)
325 PRK14837 undecaprenyl pyrophos 40.2 1.2E+02 0.0027 23.9 6.2 52 29-80 35-99 (230)
326 PRK14175 bifunctional 5,10-met 40.1 2.1E+02 0.0045 23.4 9.5 67 30-108 16-85 (286)
327 COG1888 Uncharacterized protei 40.1 42 0.00092 22.6 3.1 15 5-19 33-47 (97)
328 PRK14840 undecaprenyl pyrophos 39.8 1.2E+02 0.0025 24.3 6.1 52 29-80 51-115 (250)
329 cd03412 CbiK_N Anaerobic cobal 39.8 1.3E+02 0.0028 21.1 6.0 42 30-71 55-97 (127)
330 PLN02540 methylenetetrahydrofo 39.6 2.9E+02 0.0063 25.0 10.1 80 29-110 42-126 (565)
331 TIGR01689 EcbF-BcbF capsule bi 39.5 1.4E+02 0.003 21.2 7.3 70 30-102 26-108 (126)
332 TIGR01430 aden_deam adenosine 39.5 1.2E+02 0.0025 24.7 6.3 44 31-75 110-154 (324)
333 PF09297 zf-NADH-PPase: NADH p 39.4 36 0.00078 17.8 2.3 22 143-164 3-25 (32)
334 PRK10933 trehalose-6-phosphate 39.3 98 0.0021 27.6 6.2 53 27-79 29-99 (551)
335 PLN02361 alpha-amylase 39.2 68 0.0015 27.5 5.0 54 1-55 38-99 (401)
336 cd00019 AP2Ec AP endonuclease 39.1 1.9E+02 0.0041 22.7 8.9 70 29-107 83-164 (279)
337 cd01320 ADA Adenosine deaminas 38.8 1.2E+02 0.0027 24.5 6.4 45 30-75 110-155 (325)
338 PRK14167 bifunctional 5,10-met 38.7 2.2E+02 0.0048 23.4 9.5 66 31-108 16-84 (297)
339 PLN02591 tryptophan synthase 38.7 1.4E+02 0.003 23.8 6.4 76 1-81 25-113 (250)
340 COG3623 SgaU Putative L-xylulo 38.4 52 0.0011 26.4 3.8 69 2-76 28-111 (287)
341 PLN02591 tryptophan synthase 38.4 2E+02 0.0044 22.9 9.7 16 30-45 117-132 (250)
342 PF08903 DUF1846: Domain of un 38.3 1.7E+02 0.0037 25.6 7.1 71 8-81 66-139 (491)
343 PRK14193 bifunctional 5,10-met 38.3 2.2E+02 0.0048 23.2 9.6 67 30-108 16-85 (284)
344 PRK08227 autoinducer 2 aldolas 38.2 1.9E+02 0.0041 23.3 7.2 44 30-76 126-173 (264)
345 TIGR00381 cdhD CO dehydrogenas 38.1 2.4E+02 0.0053 24.1 8.0 20 3-22 151-170 (389)
346 COG0854 PdxJ Pyridoxal phospha 38.1 79 0.0017 25.0 4.7 56 17-83 91-152 (243)
347 PRK14842 undecaprenyl pyrophos 38.0 1.5E+02 0.0033 23.5 6.5 52 29-80 37-101 (241)
348 cd00423 Pterin_binding Pterin 37.8 1.6E+02 0.0035 23.3 6.7 16 64-79 110-125 (258)
349 PRK14182 bifunctional 5,10-met 37.7 2.3E+02 0.0049 23.2 9.6 67 30-108 14-83 (282)
350 cd00475 CIS_IPPS Cis (Z)-Isopr 37.6 1.3E+02 0.0029 23.5 6.1 52 29-80 29-93 (221)
351 PRK05788 cobalamin biosynthesi 37.2 66 0.0014 26.6 4.5 51 29-80 206-257 (315)
352 TIGR02804 ExbD_2 TonB system t 37.2 57 0.0012 22.6 3.7 23 29-51 96-118 (121)
353 PRK13210 putative L-xylulose 5 37.1 2E+02 0.0044 22.5 7.9 14 2-15 26-39 (284)
354 PLN02826 dihydroorotate dehydr 37.0 1.3E+02 0.0029 25.8 6.5 50 28-80 239-296 (409)
355 COG2179 Predicted hydrolase of 37.0 1.4E+02 0.0031 22.5 5.8 64 1-76 23-86 (175)
356 PRK13397 3-deoxy-7-phosphohept 37.0 2.2E+02 0.0047 22.8 7.6 43 65-107 203-246 (250)
357 cd01321 ADGF Adenosine deamina 36.8 2.3E+02 0.005 23.6 7.8 67 3-73 81-155 (345)
358 PRK10240 undecaprenyl pyrophos 36.7 1.5E+02 0.0032 23.4 6.2 52 29-80 22-86 (229)
359 PRK14839 undecaprenyl pyrophos 36.5 1.4E+02 0.0029 23.8 6.0 52 29-80 38-102 (239)
360 KOG2524|consensus 36.4 45 0.00098 27.0 3.2 61 6-68 67-131 (338)
361 TIGR02801 tolR TolR protein. T 36.3 61 0.0013 22.6 3.7 22 29-50 105-126 (129)
362 TIGR02403 trehalose_treC alpha 35.9 1.1E+02 0.0025 27.1 6.1 54 26-79 22-93 (543)
363 PRK07565 dihydroorotate dehydr 35.8 1.5E+02 0.0031 24.5 6.4 72 2-80 124-197 (334)
364 TIGR00977 LeuA_rel 2-isopropyl 35.8 26 0.00056 31.1 2.0 78 1-79 32-140 (526)
365 COG0106 HisA Phosphoribosylfor 35.7 2.3E+02 0.0049 22.6 7.8 69 34-109 87-160 (241)
366 PRK02048 4-hydroxy-3-methylbut 35.6 1.1E+02 0.0025 27.7 5.9 74 1-79 50-159 (611)
367 PF02680 DUF211: Uncharacteriz 35.3 18 0.00038 24.6 0.7 36 5-40 31-70 (95)
368 TIGR01037 pyrD_sub1_fam dihydr 35.2 1.8E+02 0.0039 23.4 6.8 66 6-77 119-185 (300)
369 PF13793 Pribosyltran_N: N-ter 35.1 1.3E+02 0.0029 20.8 5.2 50 58-107 60-114 (116)
370 COG3343 RpoE DNA-directed RNA 35.0 79 0.0017 23.9 4.1 63 29-109 32-95 (175)
371 PRK14114 1-(5-phosphoribosyl)- 35.0 1.2E+02 0.0027 23.9 5.6 100 2-108 40-156 (241)
372 PRK14841 undecaprenyl pyrophos 34.9 1.8E+02 0.0039 23.0 6.4 52 29-80 32-96 (233)
373 TIGR03551 F420_cofH 7,8-dideme 34.8 1.4E+02 0.0031 24.6 6.2 51 29-79 71-121 (343)
374 PRK14833 undecaprenyl pyrophos 34.7 1.4E+02 0.003 23.7 5.8 52 29-80 33-97 (233)
375 cd00003 PNPsynthase Pyridoxine 34.7 1.8E+02 0.0039 23.1 6.3 56 16-82 89-150 (234)
376 cd01299 Met_dep_hydrolase_A Me 34.5 2E+02 0.0043 23.2 7.0 52 29-80 118-179 (342)
377 PRK07998 gatY putative fructos 34.5 1.9E+02 0.0041 23.6 6.7 14 63-76 155-168 (283)
378 TIGR01663 PNK-3'Pase polynucle 34.4 1.6E+02 0.0034 26.3 6.6 49 30-82 406-454 (526)
379 COG0167 PyrD Dihydroorotate de 34.3 60 0.0013 26.8 3.8 46 29-81 148-194 (310)
380 TIGR01019 sucCoAalpha succinyl 34.0 1.6E+02 0.0036 23.9 6.3 46 29-77 72-117 (286)
381 PRK13912 nuclease NucT; Provis 33.8 1.6E+02 0.0035 21.8 5.8 45 29-80 34-78 (177)
382 cd02940 DHPD_FMN Dihydropyrimi 33.7 64 0.0014 26.2 3.9 69 2-76 123-195 (299)
383 COG2089 SpsE Sialic acid synth 33.7 1.7E+02 0.0037 24.6 6.3 26 27-52 26-51 (347)
384 TIGR03581 EF_0839 conserved hy 33.6 1.9E+02 0.0041 22.9 6.2 64 1-84 144-208 (236)
385 PLN02321 2-isopropylmalate syn 33.5 3.8E+02 0.0083 24.6 9.9 96 8-110 185-283 (632)
386 PRK14188 bifunctional 5,10-met 33.3 2.7E+02 0.0059 22.8 9.6 66 31-108 16-85 (296)
387 PRK08123 histidinol-phosphatas 33.3 71 0.0015 25.4 4.1 11 6-16 111-121 (270)
388 PRK14180 bifunctional 5,10-met 33.3 2.7E+02 0.0058 22.7 9.5 67 30-108 14-84 (282)
389 PF00248 Aldo_ket_red: Aldo/ke 33.1 1.2E+02 0.0026 23.8 5.4 37 1-44 92-129 (283)
390 PRK14836 undecaprenyl pyrophos 33.0 96 0.0021 24.8 4.7 52 29-80 43-107 (253)
391 TIGR01307 pgm_bpd_ind 2,3-bisp 32.9 3.5E+02 0.0077 24.0 9.6 73 30-108 91-167 (501)
392 PRK13663 hypothetical protein; 32.9 1.7E+02 0.0038 25.5 6.3 70 8-81 67-140 (493)
393 KOG1577|consensus 32.9 1.2E+02 0.0026 25.0 5.2 73 29-109 136-232 (300)
394 PF05913 DUF871: Bacterial pro 32.8 1.3E+02 0.0028 25.4 5.6 48 29-77 12-63 (357)
395 PRK11024 colicin uptake protei 32.7 75 0.0016 22.7 3.8 22 29-50 115-136 (141)
396 PTZ00349 dehydrodolichyl dipho 32.7 1.7E+02 0.0037 24.4 6.1 72 7-80 21-115 (322)
397 PF00728 Glyco_hydro_20: Glyco 32.7 1.4E+02 0.003 24.4 5.8 49 29-77 16-89 (351)
398 PRK14829 undecaprenyl pyrophos 32.5 1.7E+02 0.0037 23.2 6.0 52 29-80 43-107 (243)
399 PRK13210 putative L-xylulose 5 32.3 2.5E+02 0.0053 22.0 9.0 14 63-76 96-109 (284)
400 PLN02897 tetrahydrofolate dehy 32.1 3.1E+02 0.0067 23.1 9.5 68 30-109 69-140 (345)
401 cd06831 PLPDE_III_ODC_like_AZI 32.0 3.2E+02 0.0069 23.2 9.2 73 29-106 148-228 (394)
402 COG4822 CbiK Cobalamin biosynt 32.0 1.3E+02 0.0027 23.9 5.0 42 42-87 164-206 (265)
403 PF10566 Glyco_hydro_97: Glyco 31.9 1.5E+02 0.0033 24.0 5.7 47 57-109 28-86 (273)
404 PLN02495 oxidoreductase, actin 31.9 1.3E+02 0.0027 25.8 5.5 74 2-81 137-215 (385)
405 cd04724 Tryptophan_synthase_al 31.9 2.3E+02 0.005 22.2 6.7 75 1-80 23-110 (242)
406 PF15609 PRTase_2: Phosphoribo 31.9 2.4E+02 0.0051 21.7 6.4 51 32-83 136-187 (191)
407 PRK08444 hypothetical protein; 31.9 1.1E+02 0.0025 25.6 5.2 44 29-72 81-124 (353)
408 cd06565 GH20_GcnA-like Glycosy 31.7 2.8E+02 0.0061 22.5 7.5 49 29-77 15-76 (301)
409 PF10609 ParA: ParA/MinD ATPas 31.7 32 0.0007 22.6 1.5 25 134-158 56-81 (81)
410 KOG1651|consensus 31.6 1.1E+02 0.0024 23.0 4.5 94 58-161 51-149 (171)
411 PF02679 ComA: (2R)-phospho-3- 31.6 83 0.0018 25.1 4.1 41 36-77 89-129 (244)
412 cd00443 ADA_AMPD Adenosine/AMP 31.5 1.2E+02 0.0026 24.7 5.1 68 3-74 57-133 (305)
413 PRK14194 bifunctional 5,10-met 31.4 3E+02 0.0065 22.7 9.7 67 30-108 17-86 (301)
414 PRK13111 trpA tryptophan synth 31.3 2.7E+02 0.0059 22.2 10.0 73 29-109 127-199 (258)
415 PRK01642 cls cardiolipin synth 31.3 1.7E+02 0.0037 25.5 6.4 48 29-80 127-175 (483)
416 PF08772 NOB1_Zn_bind: Nin one 31.2 29 0.00063 22.3 1.2 31 136-166 17-54 (73)
417 PRK12457 2-dehydro-3-deoxyphos 31.2 2.9E+02 0.0064 22.5 8.4 73 34-107 179-264 (281)
418 PRK14171 bifunctional 5,10-met 31.2 3E+02 0.0064 22.6 9.7 67 30-108 15-85 (288)
419 TIGR01362 KDO8P_synth 3-deoxy- 31.1 2.8E+02 0.0061 22.3 8.3 73 34-107 165-248 (258)
420 cd02072 Glm_B12_BD B12 binding 31.1 2E+02 0.0043 20.5 6.0 36 38-75 44-79 (128)
421 TIGR00506 ribB 3,4-dihydroxy-2 31.0 1.4E+02 0.003 23.1 5.1 16 25-41 97-112 (199)
422 cd06570 GH20_chitobiase-like_1 30.9 2.9E+02 0.0062 22.7 7.3 49 29-77 16-84 (311)
423 PRK05198 2-dehydro-3-deoxyphos 30.9 2.9E+02 0.0063 22.4 8.1 73 34-107 173-256 (264)
424 COG0119 LeuA Isopropylmalate/h 30.8 1.3E+02 0.0027 26.0 5.3 79 1-79 33-135 (409)
425 PRK01060 endonuclease IV; Prov 30.7 2.6E+02 0.0055 22.0 6.9 70 2-77 22-105 (281)
426 PRK14831 undecaprenyl pyrophos 30.6 1.6E+02 0.0035 23.5 5.6 52 29-80 49-113 (249)
427 PRK09250 fructose-bisphosphate 30.6 3.3E+02 0.0072 23.0 8.2 66 4-77 158-233 (348)
428 KOG3603|consensus 30.5 1.5E+02 0.0034 25.7 5.7 73 28-109 276-353 (456)
429 PF04472 DUF552: Protein of un 30.4 1.4E+02 0.0031 18.7 4.4 41 27-72 6-46 (73)
430 PLN02231 alanine transaminase 30.3 2.9E+02 0.0062 24.5 7.7 49 29-79 254-309 (534)
431 PRK00915 2-isopropylmalate syn 30.2 1.2E+02 0.0026 26.9 5.2 79 1-79 35-138 (513)
432 cd06568 GH20_SpHex_like A subg 30.1 2.7E+02 0.0059 23.0 7.1 20 58-77 72-91 (329)
433 COG2159 Predicted metal-depend 30.1 3E+02 0.0065 22.3 8.3 81 31-115 112-196 (293)
434 KOG4355|consensus 30.1 3.7E+02 0.008 23.4 9.5 76 9-88 301-383 (547)
435 TIGR01210 conserved hypothetic 30.0 3.1E+02 0.0067 22.4 8.6 47 34-80 117-174 (313)
436 TIGR03217 4OH_2_O_val_ald 4-hy 29.9 3.2E+02 0.007 22.6 9.2 44 34-80 90-133 (333)
437 PRK00934 ribose-phosphate pyro 29.9 2.5E+02 0.0054 22.7 6.7 52 58-109 58-115 (285)
438 PRK01792 ribB 3,4-dihydroxy-2- 29.9 1.5E+02 0.0032 23.2 5.1 29 8-41 94-122 (214)
439 PF04914 DltD_C: DltD C-termin 29.7 64 0.0014 23.1 2.9 27 60-87 35-61 (130)
440 PF02762 Cbl_N3: CBL proto-onc 29.5 1.7E+02 0.0036 19.2 4.9 15 94-108 7-21 (86)
441 cd08210 RLP_RrRLP Ribulose bis 29.5 1.7E+02 0.0036 24.8 5.8 55 29-86 175-230 (364)
442 PRK14832 undecaprenyl pyrophos 29.5 2.2E+02 0.0049 22.8 6.2 52 29-80 47-111 (253)
443 PRK05474 xylose isomerase; Pro 29.5 3.8E+02 0.0083 23.4 8.2 73 29-107 164-254 (437)
444 COG1060 ThiH Thiamine biosynth 29.5 1.3E+02 0.0028 25.6 5.1 80 29-109 91-171 (370)
445 PRK10933 trehalose-6-phosphate 29.4 1.1E+02 0.0024 27.2 5.0 54 1-55 42-104 (551)
446 PF13380 CoA_binding_2: CoA bi 29.4 1.6E+02 0.0034 20.3 4.8 40 30-76 65-104 (116)
447 PLN03228 methylthioalkylmalate 29.4 1.4E+02 0.0029 26.5 5.4 24 1-24 115-138 (503)
448 PRK00910 ribB 3,4-dihydroxy-2- 29.4 1.5E+02 0.0032 23.3 5.0 30 8-42 95-124 (218)
449 cd06563 GH20_chitobiase-like T 29.4 2.3E+02 0.005 23.6 6.6 20 58-77 83-102 (357)
450 PRK12652 putative monovalent c 29.2 2.8E+02 0.0061 23.4 7.1 27 62-88 101-129 (357)
451 TIGR03356 BGL beta-galactosida 29.2 1.1E+02 0.0023 26.4 4.7 49 1-51 63-113 (427)
452 PRK05773 3,4-dihydroxy-2-butan 29.1 1.4E+02 0.003 23.5 4.9 8 8-15 94-101 (219)
453 TIGR01515 branching_enzym alph 29.1 1.1E+02 0.0025 27.6 5.0 53 1-54 166-228 (613)
454 cd01304 FMDH_A Formylmethanofu 28.9 4.3E+02 0.0093 23.8 9.0 75 29-107 206-293 (541)
455 cd00947 TBP_aldolase_IIB Tagat 28.9 2.9E+02 0.0064 22.4 6.9 21 31-52 110-130 (276)
456 PRK02812 ribose-phosphate pyro 28.8 1.8E+02 0.0039 24.2 5.8 50 59-108 82-137 (330)
457 PRK14827 undecaprenyl pyrophos 28.8 2.1E+02 0.0046 23.5 6.1 52 29-80 96-160 (296)
458 PRK12737 gatY tagatose-bisphos 28.8 2.6E+02 0.0057 22.7 6.7 21 31-52 115-135 (284)
459 KOG1602|consensus 28.7 1.3E+02 0.0028 24.3 4.7 43 29-71 65-109 (271)
460 PLN02376 1-aminocyclopropane-1 28.7 3.6E+02 0.0079 23.6 8.0 69 4-81 164-239 (496)
461 PRK05222 5-methyltetrahydropte 28.7 2.1E+02 0.0046 26.7 6.8 76 1-83 590-669 (758)
462 PF04461 DUF520: Protein of un 28.7 2.5E+02 0.0054 20.9 6.6 51 31-82 103-159 (160)
463 PRK12999 pyruvate carboxylase; 28.6 5.6E+02 0.012 25.3 9.7 89 2-109 637-733 (1146)
464 PLN02321 2-isopropylmalate syn 28.5 1.6E+02 0.0034 27.0 5.8 79 1-79 117-229 (632)
465 COG0848 ExbD Biopolymer transp 28.3 99 0.0022 22.2 3.7 24 29-52 109-132 (137)
466 PF13096 CENP-P: CENP-A-nucleo 28.3 1.3E+02 0.0027 22.8 4.3 14 151-164 121-134 (177)
467 PRK00014 ribB 3,4-dihydroxy-2- 28.3 1.6E+02 0.0035 23.3 5.1 29 8-41 99-127 (230)
468 PRK08195 4-hyroxy-2-oxovalerat 28.2 3.5E+02 0.0076 22.5 9.1 44 34-80 91-134 (337)
469 PF06943 zf-LSD1: LSD1 zinc fi 28.1 45 0.00098 16.8 1.3 15 146-160 1-15 (25)
470 TIGR03700 mena_SCO4494 putativ 28.1 1.3E+02 0.0028 25.0 4.9 45 29-73 80-124 (351)
471 PF04443 LuxE: Acyl-protein sy 28.1 3.7E+02 0.0079 22.7 8.6 75 29-110 176-253 (365)
472 PRK09856 fructoselysine 3-epim 28.1 1.5E+02 0.0032 23.2 5.1 16 61-76 47-62 (275)
473 PRK11267 biopolymer transport 28.0 98 0.0021 22.1 3.7 22 29-50 111-132 (141)
474 COG1453 Predicted oxidoreducta 27.6 2.6E+02 0.0057 23.9 6.5 39 2-44 104-143 (391)
475 PF07615 Ykof: YKOF-related Fa 27.6 1.8E+02 0.0038 18.8 6.8 61 8-79 3-70 (81)
476 COG0289 DapB Dihydrodipicolina 27.5 1.5E+02 0.0031 24.1 4.8 42 30-75 79-120 (266)
477 TIGR00676 fadh2 5,10-methylene 27.5 3.2E+02 0.0069 21.8 12.2 80 29-110 42-124 (272)
478 TIGR02403 trehalose_treC alpha 27.4 1.3E+02 0.0028 26.8 5.0 54 1-55 36-98 (543)
479 COG2730 BglC Endoglucanase [Ca 27.4 98 0.0021 26.4 4.1 56 1-57 82-141 (407)
480 COG0521 MoaB Molybdopterin bio 27.3 2.7E+02 0.0059 20.9 7.8 72 31-111 26-99 (169)
481 PRK07094 biotin synthase; Prov 27.2 2.9E+02 0.0063 22.3 6.8 17 29-45 71-87 (323)
482 COG4943 Predicted signal trans 27.2 1.8E+02 0.0038 25.9 5.5 78 30-108 422-517 (524)
483 PRK07328 histidinol-phosphatas 27.1 92 0.002 24.7 3.7 15 3-17 103-117 (269)
484 PRK07709 fructose-bisphosphate 27.1 3.2E+02 0.007 22.2 6.9 47 30-77 117-172 (285)
485 cd07943 DRE_TIM_HOA 4-hydroxy- 27.0 2.5E+02 0.0054 22.2 6.2 43 34-80 88-131 (263)
486 cd07484 Peptidases_S8_Thermita 27.0 2.6E+02 0.0057 21.6 6.3 45 29-75 110-154 (260)
487 PRK12452 cardiolipin synthetas 26.8 1.6E+02 0.0035 25.9 5.5 45 30-80 346-390 (509)
488 PRK14174 bifunctional 5,10-met 26.8 3.6E+02 0.0078 22.1 9.5 66 31-108 15-84 (295)
489 TIGR00695 uxuA mannonate dehyd 26.6 3.4E+02 0.0073 23.3 7.1 77 2-86 20-108 (394)
490 TIGR01866 cas_Csn2 CRISPR-asso 26.6 2.7E+02 0.0059 21.7 6.1 55 29-83 146-200 (216)
491 PLN02446 (5-phosphoribosyl)-5- 26.5 3.4E+02 0.0075 21.9 8.6 101 2-108 53-175 (262)
492 COG3693 XynA Beta-1,4-xylanase 26.5 1.4E+02 0.0031 25.0 4.7 51 58-108 79-130 (345)
493 COG0648 Nfo Endonuclease IV [D 26.5 3.6E+02 0.0077 22.0 7.4 77 29-109 119-203 (280)
494 COG0620 MetE Methionine syntha 26.4 1.5E+02 0.0033 24.6 5.0 71 1-77 167-238 (330)
495 COG1830 FbaB DhnA-type fructos 26.4 3.2E+02 0.0069 22.2 6.5 66 4-77 109-182 (265)
496 PF09345 DUF1987: Domain of un 26.3 2.1E+02 0.0046 19.3 6.7 50 30-80 27-82 (99)
497 PF13540 RCC1_2: Regulator of 26.2 40 0.00086 17.3 1.0 20 146-165 6-25 (30)
498 cd04738 DHOD_2_like Dihydrooro 26.2 1.6E+02 0.0035 24.2 5.1 45 29-76 184-231 (327)
499 PRK11565 dkgA 2,5-diketo-D-glu 26.1 3.3E+02 0.0072 21.6 7.5 21 65-87 171-191 (275)
500 TIGR01761 thiaz-red thiazoliny 26.0 2.1E+02 0.0046 23.9 5.8 35 38-77 84-118 (343)
No 1
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=100.00 E-value=5.5e-44 Score=288.91 Aligned_cols=170 Identities=44% Similarity=0.773 Sum_probs=156.7
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEEEE
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRFI 80 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~~i 80 (172)
||+|||++|||||||++|++|.+|++.+.+++|+++|+++.++|+.+||||+|+++|+|++||++|++|+++.|+.++||
T Consensus 107 Lk~AGl~rVNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kgvNd~ei~~l~e~~~~~~~~lrfI 186 (322)
T COG2896 107 LKEAGLDRVNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKGVNDDEIEDLLEFAKERGAQLRFI 186 (322)
T ss_pred HHHcCCcEEEeecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEEecCCCHHHHHHHHHHHhhcCCceEEE
Confidence 68999999999999999999999999889999999999999999977999999999999999999999999999999999
Q ss_pred eeeeCCC-CCCCCCCCCCHHHHHHHHHHhCCCceeccCCCCCceeEEEeCCCCceEEEEcCCCCCcccCCCceeeccCCc
Q psy5052 81 EYMPFSG-NQWNNTKIMPFSEMLTKIKEAHPDLLTLENAPNDTSKAYKVPEFKGQVGFITSMTEHFCGTCNRLRLMADGS 159 (172)
Q Consensus 81 ~~~p~g~-~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~C~~c~~~~i~~~G~ 159 (172)
|+||+|. ..|..+.+++.+++.+.|.+.+. +.+.....++++.||...++. .||+|+|++++||.+|||+|+|+||+
T Consensus 187 E~m~~g~~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~a~~~~~~~~~-~ig~I~p~~~~FC~~CnR~Rlt~dGk 264 (322)
T COG2896 187 ELMPLGEGNSWRLDKYLSLDEILRKLEERAT-LLPVRKRLHGRAKYFIHPDGG-EIGFIAPVSNPFCATCNRLRLTADGK 264 (322)
T ss_pred EEeecCcccchhhhccccHHHHHHHHHhhcc-ccccccccCCCceEEEeCCCc-EEEEEcCCCchhhhhcceeeeccCCe
Confidence 9999997 45777778999999999999774 555443557889999988765 99999999999999999999999999
Q ss_pred EEecCCCCCcccC
Q psy5052 160 LKVCLFGNTEISL 172 (172)
Q Consensus 160 v~pC~~~~~~~~~ 172 (172)
++||+|.++++||
T Consensus 265 l~~CL~~~~~~dl 277 (322)
T COG2896 265 LKPCLFREDGIDL 277 (322)
T ss_pred EEeccCCCcCcch
Confidence 9999999999885
No 2
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=100.00 E-value=1.7e-40 Score=273.14 Aligned_cols=171 Identities=35% Similarity=0.625 Sum_probs=155.1
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEEEE
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRFI 80 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~~i 80 (172)
|+++|+++|+|||||++++.|+++++.+.|++|+++|+.++++|+.++++|+|+++|.|++|+.++++|++++|++++|+
T Consensus 110 L~~aGl~~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~gi~~~~i 189 (329)
T PRK13361 110 LADAGLKRLNISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRERGLDIAFI 189 (329)
T ss_pred HHHcCCCeEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHhcCCeEEEE
Confidence 57899999999999999999999999889999999999999999856999999999999999999999999999999999
Q ss_pred eeeeCCCC-CCCCCCCCCHHHHHHHHHHhCCCceeccCCCCCceeEEEeCCCCceEEEEcCCCCCcccCCCceeeccCCc
Q psy5052 81 EYMPFSGN-QWNNTKIMPFSEMLTKIKEAHPDLLTLENAPNDTSKAYKVPEFKGQVGFITSMTEHFCGTCNRLRLMADGS 159 (172)
Q Consensus 81 ~~~p~g~~-~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~C~~c~~~~i~~~G~ 159 (172)
++||+|+. .|..+..++.+|+++.|++.++ +.+.....++|+.||+++++.+.||+|++++++||++|||+||||||+
T Consensus 190 e~mP~g~~~~~~~~~~~~~~e~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ig~I~~~s~~fC~~Cnr~rlt~~G~ 268 (329)
T PRK13361 190 EEMPLGEIDERRRARHCSSDEVRAIIETRYP-LTPSNKRTGGPARYYTMADSPIHIGFISPHSHNFCHECNRVRVTAEGQ 268 (329)
T ss_pred ecccCCCccchhhccCcCHHHHHHHHHHhCC-cccCCCCCCCCCeEEEECCCCeEEEEEcCCCccccccCCeEEEccCCc
Confidence 99999985 4656678999999999999875 333322336889999999988999999999999999999999999999
Q ss_pred EEecCCCCCcccC
Q psy5052 160 LKVCLFGNTEISL 172 (172)
Q Consensus 160 v~pC~~~~~~~~~ 172 (172)
++||+|.+.++||
T Consensus 269 l~~Cl~~~~~~~l 281 (329)
T PRK13361 269 LLLCLGNEHASDL 281 (329)
T ss_pred EEecCCCCCCcch
Confidence 9999999999986
No 3
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=100.00 E-value=2.3e-40 Score=276.09 Aligned_cols=172 Identities=62% Similarity=1.084 Sum_probs=157.0
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEEEE
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRFI 80 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~~i 80 (172)
|+++|+++|+||||++++++|+++++.+.+++++++|++++++|+.+|+||+|+++|.|++|+.++++|++++|+.++|+
T Consensus 155 L~~aGld~VnISLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~G~~~vkin~vv~~g~N~~Ei~~li~~a~~~gi~vr~i 234 (373)
T PLN02951 155 LKEAGLTSLNISLDTLVPAKFEFLTRRKGHDRVLESIDTAIELGYNPVKVNCVVMRGFNDDEICDFVELTRDKPINVRFI 234 (373)
T ss_pred HHhCCCCeEEEeeccCCHHHHHHHhcCCCHHHHHHHHHHHHHcCCCcEEEEEEecCCCCHHHHHHHHHHHHhCCCeEEEE
Confidence 57899999999999999999999998778999999999999999756999999999999999999999999999999999
Q ss_pred eeeeCCCCCCCCCCCCCHHHHHHHHHHhCCCceeccCCCCCceeEEEeCCCCceEEEEcCCCCCcccCCCceeeccCCcE
Q psy5052 81 EYMPFSGNQWNNTKIMPFSEMLTKIKEAHPDLLTLENAPNDTSKAYKVPEFKGQVGFITSMTEHFCGTCNRLRLMADGSL 160 (172)
Q Consensus 81 ~~~p~g~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~C~~c~~~~i~~~G~v 160 (172)
++||++...|..+..++.+|+++.|+++++.+.+......+|+.||+++++++.||+|++++++||++|||+|||+||++
T Consensus 235 e~mP~~~~~~~~~~~~~~~ei~~~l~~~~~~~~~~~~~~~~~a~~y~~~~~~g~ig~I~~~s~~FC~~CnRlRltadG~l 314 (373)
T PLN02951 235 EFMPFDGNVWNVKKLVPYAEMMDRIEQRFPSLKRLQDHPTDTAKNFRIDGHCGSVSFITSMTEHFCAGCNRLRLLADGNL 314 (373)
T ss_pred EcccCCCCccccccCCCHHHHHHHHHHhcCcccccCCCCCCCceEEEECCCCeEEEEEcCCcccccccCCeEEEccCCcE
Confidence 99999987776667789999999999988644544333467899999999889999999999999999999999999999
Q ss_pred EecCCCCCcccC
Q psy5052 161 KVCLFGNTEISL 172 (172)
Q Consensus 161 ~pC~~~~~~~~~ 172 (172)
+||+|.+.++||
T Consensus 315 ~~CL~~~~~~dl 326 (373)
T PLN02951 315 KVCLFGPSEVSL 326 (373)
T ss_pred EecCCCCCCcCh
Confidence 999999999886
No 4
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=100.00 E-value=6.5e-37 Score=251.86 Aligned_cols=171 Identities=40% Similarity=0.733 Sum_probs=153.4
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEEEE
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRFI 80 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~~i 80 (172)
|+++|++.|+|||||++++.|+++++.+.|++++++|+.+.++|+.++++|+|+++|.|++|+.++++|++++|+.++|+
T Consensus 114 L~~agl~~i~ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~gv~v~~i 193 (331)
T PRK00164 114 LKDAGLDRVNVSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRGIQLRFI 193 (331)
T ss_pred HHHcCCCEEEEEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCCCeEEEE
Confidence 56899999999999999999999998889999999999999999756999999999999999999999999999999999
Q ss_pred eeeeCCCC-CCCCCCCCCHHHHHHHHHHhCCCceeccCCCCCceeEEEeCCCCceEEEEcCCCCCcccCCCceeeccCCc
Q psy5052 81 EYMPFSGN-QWNNTKIMPFSEMLTKIKEAHPDLLTLENAPNDTSKAYKVPEFKGQVGFITSMTEHFCGTCNRLRLMADGS 159 (172)
Q Consensus 81 ~~~p~g~~-~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~C~~c~~~~i~~~G~ 159 (172)
++||++.+ .|..+..++.+++++.|++.+....+.. ...+|+.||.+++..+.||+|++++++||++|||+||||||+
T Consensus 194 e~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ig~i~~~s~~fC~~c~r~r~t~dG~ 272 (331)
T PRK00164 194 ELMPTGEGNEWFRKHHLSGAEIRARLAERGWTLQPRA-RSGGPAQYFRHPDYGGEIGLIAPVTHDFCASCNRLRLTADGK 272 (331)
T ss_pred EeeECCCCcchhhhcCCCHHHHHHHHHhccCcccccC-CCCCCCEEEEECCCCeEEEEEeCCCCcccccCCeEEEcCCCc
Confidence 99999875 5666678899999999998722233322 235789999998888999999999999999999999999999
Q ss_pred EEecCCCCCcccC
Q psy5052 160 LKVCLFGNTEISL 172 (172)
Q Consensus 160 v~pC~~~~~~~~~ 172 (172)
++||++.+.++||
T Consensus 273 l~~Cl~~~~~~~l 285 (331)
T PRK00164 273 LHLCLFAEDGVDL 285 (331)
T ss_pred EEEcCCCCCCcCH
Confidence 9999999999886
No 5
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=100.00 E-value=1.2e-36 Score=250.68 Aligned_cols=172 Identities=42% Similarity=0.803 Sum_probs=152.9
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccC-CCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEEE
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITR-RKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRF 79 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g-~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~~ 79 (172)
|+++|++.|+||||+++++.|+++++ .++|++++++|+.++++|+.++++|+|+++|.|++|+.++++|++++|+.++|
T Consensus 108 L~~~gl~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~n~~ei~~l~~~~~~~gv~~~~ 187 (334)
T TIGR02666 108 LKEAGLKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMRGVNDDEIVDLAEFAKERGVTLRF 187 (334)
T ss_pred HHHcCCCeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhcCCeEEE
Confidence 57899999999999999999999985 46999999999999999993399999999999999999999999999999999
Q ss_pred EeeeeCCCC-CCCCCCCCCHHHHHHHHHHhCCCceecc-CCCCCceeEEE--eCCCCceEEEEcCCCCCcccCCCceeec
Q psy5052 80 IEYMPFSGN-QWNNTKIMPFSEMLTKIKEAHPDLLTLE-NAPNDTSKAYK--VPEFKGQVGFITSMTEHFCGTCNRLRLM 155 (172)
Q Consensus 80 i~~~p~g~~-~~~~~~~~~~~e~~~~l~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~g~i~~~~~~~C~~c~~~~i~ 155 (172)
+++||++.+ .|.....++.+++++.|.+.++.+.+.. ...++|+++|. ++++.+.||+|++++++||++|||+|||
T Consensus 188 ie~mp~~~~~~~~~~~~~~~~ei~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~i~~~s~~fC~~cnr~r~t 267 (334)
T TIGR02666 188 IELMPLGEGNGWREKKFVSADEILERLEQAFGPLEPVPSPRGNGPAPAYRWRLPGGKGRIGFISPVSDPFCGTCNRLRLT 267 (334)
T ss_pred EeccCCCCCccchhhcccCHHHHHHHHHhhcccceecCcCCCCCCceeeeeecCCCCeEEEEEccCCcccccccCEEEEc
Confidence 999999875 4655667899999999999875454432 22467889998 7887789999999999999999999999
Q ss_pred cCCcEEecCCCCCcccC
Q psy5052 156 ADGSLKVCLFGNTEISL 172 (172)
Q Consensus 156 ~~G~v~pC~~~~~~~~~ 172 (172)
|||+++||++.++++||
T Consensus 268 ~dG~l~~Cl~~~~~~~l 284 (334)
T TIGR02666 268 ADGKLRLCLFADDGVDL 284 (334)
T ss_pred cCCCEEEccCCCCCCch
Confidence 99999999999999986
No 6
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=100.00 E-value=9.6e-34 Score=230.33 Aligned_cols=168 Identities=33% Similarity=0.553 Sum_probs=143.5
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEEEE
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRFI 80 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~~i 80 (172)
|+++|++.|+||||+++++.|+++++.++|++++++|+.++++|+.++++|+|+++|.|++++.++++|++++|+.++|+
T Consensus 104 l~~~g~~~v~iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~~v~i~~v~~~g~n~~ei~~~~~~~~~~g~~~~~i 183 (302)
T TIGR02668 104 LKEAGLDRVNVSLDTLDPEKYKKITGRGALDRVIEGIESAVDAGLTPVKLNMVVLKGINDNEIPDMVEFAAEGGAILQLI 183 (302)
T ss_pred HHHCCCCEEEEEecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhcCCEEEEE
Confidence 46889999999999999999999999889999999999999999844999999999999999999999999999999999
Q ss_pred eeeeCCCC-CCCCCCCCCHHHHHHHHHHhCCCceeccCCCCCceeEEEeCCCCceEEEEcCCCC-CcccCCCceeeccCC
Q psy5052 81 EYMPFSGN-QWNNTKIMPFSEMLTKIKEAHPDLLTLENAPNDTSKAYKVPEFKGQVGFITSMTE-HFCGTCNRLRLMADG 158 (172)
Q Consensus 81 ~~~p~g~~-~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~-~~C~~c~~~~i~~~G 158 (172)
++||.+.+ .|......+.+++.+.+++.+... .. ....+ +.+|.+++. +.+|+|+++++ +||++|||+||||||
T Consensus 184 e~~p~~~~~~~~~~~~~~~~~i~~~l~~~~~~~-~~-~~~~~-~~~~~~~~~-~~~g~i~~~~~~~fC~~c~r~r~t~dG 259 (302)
T TIGR02668 184 ELMPPGEGEKEFKKYHEDIDPIEEELEKMADRV-RT-RRMHN-RPKYFIPGG-VEVEVVKPMDNPVFCAHCTRLRLTSDG 259 (302)
T ss_pred EEeECCCCccchhhceecHHHHHHHHHHhcccc-cc-cCCCC-CcEEEeCCC-eEEEEECccCCCCccccCCeEEEcCCC
Confidence 99999865 344455678999999998875322 11 11223 445557765 89999999999 599999999999999
Q ss_pred cEEecCCCCC-cccC
Q psy5052 159 SLKVCLFGNT-EISL 172 (172)
Q Consensus 159 ~v~pC~~~~~-~~~~ 172 (172)
+++||+|.++ ++||
T Consensus 260 ~l~~Cl~~~~~~~~~ 274 (302)
T TIGR02668 260 KLKTCLLRDDNLVDI 274 (302)
T ss_pred CEEECCCCCCCCcch
Confidence 9999999984 7886
No 7
>KOG2876|consensus
Probab=99.97 E-value=5.7e-33 Score=216.33 Aligned_cols=172 Identities=62% Similarity=1.056 Sum_probs=161.7
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEEEE
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRFI 80 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~~i 80 (172)
|.++|++.+|||+|++.++.+.+++++..|.+|+++|+.+.+.|..++++|+|+++|.|.+|+.|++.+.+...++|+||
T Consensus 108 lhkaglssiNiSldtl~~aKfa~~~rr~g~v~V~~~iq~a~~lgy~pvkvn~v~~k~~n~~ev~Dfv~~tr~~p~DVrfI 187 (323)
T KOG2876|consen 108 LHKAGLSSINISLDTLVRAKFAKLTRRKGFVKVWASIQLAIELGYNPVKVNCVVMKGLNEDEVFDFVLLTRMRPLDVRFI 187 (323)
T ss_pred HHhhcccchhhhhhhhhHHHHHHHhhhccHHHHHHHHhHHhhhCCCCcceeeEEEeccCCCcccceeeecCCCCcceEEE
Confidence 46899999999999999999999998889999999999999999888999999999999999999999999999999999
Q ss_pred eeeeCCCCCCCCCCCCCHHHHHHHHHHhCCCceeccCCCCCceeEEEeCCCCceEEEEcCCCCCcccCCCceeeccCCcE
Q psy5052 81 EYMPFSGNQWNNTKIMPFSEMLTKIKEAHPDLLTLENAPNDTSKAYKVPEFKGQVGFITSMTEHFCGTCNRLRLMADGSL 160 (172)
Q Consensus 81 ~~~p~g~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~C~~c~~~~i~~~G~v 160 (172)
+|||..++.|..+..+++.|.++.+.+.++....++..+..+++-|.++++.|.++||.+.+.+||++|||+|+++||++
T Consensus 188 e~mpf~gn~~~t~~lIpy~e~l~l~~~~~d~~~~l~~e~s~T~Ka~~i~g~~gqvsfitsm~~hfC~tcnrlr~~aDgnl 267 (323)
T KOG2876|consen 188 EFMPFDGNKWNTKSLIPYKEMLDLIVKPWDFSVRLPDEPSDTAKAYKIDGFQGQVSFITSMSEHFCGTCNRLRITADGNL 267 (323)
T ss_pred EecccCCCcccccccccHHHHHHHHhccCchhhcCCCCCCccccccccccccceEEeehhhHHHHHhhhhhheEeccCcE
Confidence 99999999999999999999999999988877777766778889999999999999999999999999999999999999
Q ss_pred EecCCCCCcccC
Q psy5052 161 KVCLFGNTEISL 172 (172)
Q Consensus 161 ~pC~~~~~~~~~ 172 (172)
..|+|-+.+..|
T Consensus 268 kvcl~G~Se~sl 279 (323)
T KOG2876|consen 268 KVCLFGNSEVSL 279 (323)
T ss_pred EEeecCCccchh
Confidence 999999887653
No 8
>PF06463 Mob_synth_C: Molybdenum Cofactor Synthesis C; InterPro: IPR010505 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This entry represents MoaA, which belongs to a family of enzymes involved in the synthesis of metallo-cofactors (IPR000385 from INTERPRO). Each subunit of the MoaA dimer is comprised of an N-terminal SAM domain (IPR007197 from INTERPRO) that contains the [4Fe-4S] cluster typical for this family of enzymes, as well as an additional [4Fe-4S] cluster in the C-terminal domain that is unique to MoaA proteins []. The unique Fe site of the C-terminal [4Fe-4S] cluster is thought to be involved in the binding and activation of 5'-GTP. Mutations in the human MoCF biosynthesis proteins MOCS1, MOCS2 or GEPH cause MoCF Deficiency type A (MOCOD), causing the loss of activity of MoCF-containing enzymes, resulting in neurological abnormalities and death [].; GO: 0051539 4 iron, 4 sulfur cluster binding, 0006777 Mo-molybdopterin cofactor biosynthetic process, 0019008 molybdopterin synthase complex; PDB: 2FB2_A 2FB3_A 1TV8_B 1TV7_A.
Probab=99.94 E-value=3e-27 Score=170.01 Aligned_cols=97 Identities=45% Similarity=0.900 Sum_probs=67.3
Q ss_pred CeEEEEeeeeCCCC-CCCCCCCCCHHHHHHHHHHhCCCceeccCCCCCceeEEEeCCCCceEEEEcCCCCCcccCCCcee
Q psy5052 75 IDVRFIEYMPFSGN-QWNNTKIMPFSEMLTKIKEAHPDLLTLENAPNDTSKAYKVPEFKGQVGFITSMTEHFCGTCNRLR 153 (172)
Q Consensus 75 ~~~~~i~~~p~g~~-~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~C~~c~~~~ 153 (172)
++|||||+||+|.+ .|....+++.+++++.|++.++ ..+......+|++||++++..|.||||+++|++||++|||+|
T Consensus 1 i~vRFIElMP~g~~~~~~~~~~~~~~ei~~~l~~~~~-~~~~~~~~~~pa~~y~~~g~~g~vG~I~~~s~~FC~~CNRiR 79 (128)
T PF06463_consen 1 IDVRFIELMPIGEGNNWFEEEFVPAQEILERLEERYE-LLPSEKRPNGPARYYRIPGGKGRVGFISPVSNPFCSSCNRIR 79 (128)
T ss_dssp -EEEEEE---B-TTSSB-TTTB--HHHHHHHHHHHS--EEEE--SST-SSEEEEETTT--EEEEE-TTTS--GGG--EEE
T ss_pred CeEEEEEeeecCCCCCchhhcCcCHHHHHHHHHHhCC-ccccccccCCcceEEEECCCCcEEEEEeCCCCCCCCcCCEEE
Confidence 47899999999975 5777788999999999999986 444433458999999999998999999999999999999999
Q ss_pred eccCCcEEecCCCCCcccC
Q psy5052 154 LMADGSLKVCLFGNTEISL 172 (172)
Q Consensus 154 i~~~G~v~pC~~~~~~~~~ 172 (172)
|||||+++||+|.++++||
T Consensus 80 lTsdG~l~~CL~~~~~idl 98 (128)
T PF06463_consen 80 LTSDGKLKPCLFSNDGIDL 98 (128)
T ss_dssp E-TTSEEESSSS-SS-EEH
T ss_pred EccCccEEEcccCCCCcCh
Confidence 9999999999999999885
No 9
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=99.73 E-value=3.8e-17 Score=135.78 Aligned_cols=86 Identities=21% Similarity=0.272 Sum_probs=75.3
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCC-CCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCe-EE
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRR-KGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPID-VR 78 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~-~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~-~~ 78 (172)
|+++|++.|+|||||.++++|++++|. ++|++++++|+.+++.|+ ++.|++|+++ .|.++++++++|+.++|++ +.
T Consensus 101 L~~~g~~~v~iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~g~-~v~v~~vv~~-~N~~~l~~~~~~~~~lg~~~i~ 178 (358)
T TIGR02109 101 LADAGLDHVQLSFQGVDEALADRIAGYKNAFEQKLAMARAVKAAGL-PLTLNFVIHR-HNIDQIPEIIELAIELGADRVE 178 (358)
T ss_pred HHhCCCCEEEEeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHhCCC-ceEEEEEecc-CCHHHHHHHHHHHHHcCCCEEE
Confidence 467899999999999999999999974 689999999999999999 8999999999 7999999999999999986 45
Q ss_pred EEeeeeCCCC
Q psy5052 79 FIEYMPFSGN 88 (172)
Q Consensus 79 ~i~~~p~g~~ 88 (172)
+....+.|.+
T Consensus 179 ~~~~~~~g~~ 188 (358)
T TIGR02109 179 LATTQYYGWA 188 (358)
T ss_pred EEeeeccCch
Confidence 5444455554
No 10
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=99.72 E-value=5.7e-17 Score=135.72 Aligned_cols=86 Identities=24% Similarity=0.363 Sum_probs=75.8
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCC-CCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCe-EE
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRR-KGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPID-VR 78 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~-~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~-~~ 78 (172)
|+++|++.|+||||+.++++|+++||. ++|++++++|+.+++.|+ ++.+++|+++ .|.+++.++++|+.++|++ +.
T Consensus 110 L~~~g~~~v~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~g~-~v~i~~vv~~-~N~~~i~~~~~~~~~lgv~~i~ 187 (378)
T PRK05301 110 LKDAGLDHIQLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAHGY-PLTLNAVIHR-HNIDQIPRIIELAVELGADRLE 187 (378)
T ss_pred HHHcCCCEEEEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHCCC-ceEEEEEeec-CCHHHHHHHHHHHHHcCCCEEE
Confidence 467899999999999999999999986 589999999999999999 8999999998 7999999999999999996 45
Q ss_pred EEeeeeCCCC
Q psy5052 79 FIEYMPFSGN 88 (172)
Q Consensus 79 ~i~~~p~g~~ 88 (172)
+..+.|.|..
T Consensus 188 ~~~~~~~g~~ 197 (378)
T PRK05301 188 LANTQYYGWA 197 (378)
T ss_pred EecccccChh
Confidence 5545555543
No 11
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=99.70 E-value=7.8e-17 Score=132.23 Aligned_cols=157 Identities=13% Similarity=0.154 Sum_probs=110.2
Q ss_pred hhcCCCeEEEeeeCCCHhhhccccC-CCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCe-EEE
Q psy5052 2 KKAGLDSINISLDTLKPDKYEFITR-RKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPID-VRF 79 (172)
Q Consensus 2 ~~aGl~~v~iSlds~~~e~~~~i~g-~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~-~~~ 79 (172)
+++|+..++|||||.. +.|+++++ .+.|++++++|+.++++|+ ++.+++|++.+.|.+++.+++++++++|++ +.+
T Consensus 120 ~~~~~~~i~VSLDG~~-e~hd~~~~~~g~f~~~l~~I~~l~~~G~-~v~v~~tv~~~~n~~ei~~~~~~~~~lGv~~i~i 197 (318)
T TIGR03470 120 EPSPYLTFSVHLDGLR-EHHDASVCREGVFDRAVEAIREAKARGF-RVTTNTTLFNDTDPEEVAEFFDYLTDLGVDGMTI 197 (318)
T ss_pred HhCCCcEEEEEEecCc-hhhchhhcCCCcHHHHHHHHHHHHHCCC-cEEEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 5678889999999975 88999875 5799999999999999999 899999997778999999999999999994 566
Q ss_pred EeeeeCCCCCCCCCCCCCHHHHHHHHHHhCCCceeccCCCCCceeEEEeCCCCceEEEEcCCCCCcccCCCceeeccCCc
Q psy5052 80 IEYMPFSGNQWNNTKIMPFSEMLTKIKEAHPDLLTLENAPNDTSKAYKVPEFKGQVGFITSMTEHFCGTCNRLRLMADGS 159 (172)
Q Consensus 80 i~~~p~g~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~C~~c~~~~i~~~G~ 159 (172)
....|++++.. .+..++.++..+.+++... .......+-...++| ++ ++..-...-|+.+.-+.+++.|+
T Consensus 198 ~p~~~~~~a~~-~~~~l~~~e~~~~~~~~~~-~~~~~~~~~~~s~~~-l~-------~l~g~~~~~C~~~~~~~~~~~G~ 267 (318)
T TIGR03470 198 SPGYAYEKAPD-QDHFLGRRQTKKLFREVLS-NGNGKRWRFNHSPLF-LD-------FLAGNQQYECTPWGNPTRNVFGW 267 (318)
T ss_pred ecCcccccccc-cccccCHHHHHHHHHHHHh-hccCCCCcccCCHHH-HH-------HHcCCCCccccCCCCcccCcccc
Confidence 66667665432 2345777776666655431 111000000011222 10 11111123577666778999999
Q ss_pred EEecCCCCCcc
Q psy5052 160 LKVCLFGNTEI 170 (172)
Q Consensus 160 v~pC~~~~~~~ 170 (172)
++||-..++++
T Consensus 268 ~~pC~~~~~~~ 278 (318)
T TIGR03470 268 QKPCYLLNDGY 278 (318)
T ss_pred ccCceecCCcc
Confidence 99999888764
No 12
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=99.63 E-value=6.7e-15 Score=120.70 Aligned_cols=97 Identities=26% Similarity=0.352 Sum_probs=84.2
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccC-CCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCe-EE
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITR-RKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPID-VR 78 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g-~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~-~~ 78 (172)
|+++|++.|+||+|+.+++.|+.++| .+.|++++++|+.++++|+ .+.+++++++ .|.++++++++++.++|+. +.
T Consensus 114 l~~~g~~~v~iSid~~~~e~hd~~rg~~g~~~~~~~~i~~~~~~g~-~~~~~~~v~~-~n~~~l~~~~~~~~~~g~~~~~ 191 (347)
T COG0535 114 LKEAGLDYVSISLDGLDPETHDPIRGVKGVFKRAVEAIKNLKEAGI-LVVINTTVTK-INYDELPEIADLAAELGVDELN 191 (347)
T ss_pred HHhcCCcEEEEEecCCChhhhhhhcCCCcHHHHHHHHHHHHHHcCC-eeeEEEEEec-CcHHHHHHHHHHHHHcCCCEEE
Confidence 46789999999999999999999998 5799999999999999999 6999999998 8999999999999999974 57
Q ss_pred EEeeeeCCCCCCCCCCCCCHH
Q psy5052 79 FIEYMPFSGNQWNNTKIMPFS 99 (172)
Q Consensus 79 ~i~~~p~g~~~~~~~~~~~~~ 99 (172)
+..++|.|+........++.+
T Consensus 192 ~~~~~~~g~~~~~~~~~~~~~ 212 (347)
T COG0535 192 VFPLIPVGRGEENLELDLTPE 212 (347)
T ss_pred EEEEeecccccccccccCCHH
Confidence 778999998654323445554
No 13
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=99.63 E-value=1.3e-15 Score=127.09 Aligned_cols=103 Identities=11% Similarity=0.150 Sum_probs=81.2
Q ss_pred ChhcCCCeEEEeeeCCCHhhhcccc----CCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCe
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFIT----RRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPID 76 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~----g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~ 76 (172)
|++.++ .|+||||+. ++.|+++| |.++|++|+++|+.+++.|+ ++.+++|+.+ .|.++++++++++.++|+.
T Consensus 112 l~~~~~-~v~iSlDg~-~~~hd~~R~~~~g~~~f~~v~~~i~~l~~~~~-~~~i~~~v~~-~n~~~l~~i~~~~~~~g~~ 187 (370)
T PRK13758 112 LSENKF-LVGLSMDGP-KEIHNLNRKDCCGLDTFSKVERAAELFKKYKV-EFNILCVVTS-NTARHVNKIYKYFKEKDFK 187 (370)
T ss_pred HHHcCc-eEEEeecCC-HHHhccccCCCCCCccHHHHHHHHHHHHHhCC-CceEEEEecc-ccccCHHHHHHHHHHcCCC
Confidence 356676 899999998 57899988 45799999999999999998 8999999999 6999999999999999985
Q ss_pred -EEEEe-eeeCCCCCCCCCCCCCHHHHHHHHHH
Q psy5052 77 -VRFIE-YMPFSGNQWNNTKIMPFSEMLTKIKE 107 (172)
Q Consensus 77 -~~~i~-~~p~g~~~~~~~~~~~~~e~~~~l~~ 107 (172)
+.++. ++|.+++....+..++.+++.+.+..
T Consensus 188 ~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~ 220 (370)
T PRK13758 188 FLQFINCLDPLYEEKGKYNYSLKPKDYTKFLKN 220 (370)
T ss_pred eEeeeeccCccccccCCCcCccCHHHHHHHHHH
Confidence 45654 46877653323345667665544443
No 14
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.57 E-value=2.1e-14 Score=119.69 Aligned_cols=107 Identities=12% Similarity=0.196 Sum_probs=89.7
Q ss_pred ChhcCCC-eEEEeeeCCCHhhhcccc---C-CCCHHHHHHHHHH-HHHcCCCcEEEEEEEecCCCHH--HHHHHHHHHhc
Q psy5052 1 YKKAGLD-SINISLDTLKPDKYEFIT---R-RKGWSRVLAGIDL-AVQLGYDNLKVNVVVMKNFNDD--EILDFVLLTRD 72 (172)
Q Consensus 1 L~~aGl~-~v~iSlds~~~e~~~~i~---g-~~~~~~vl~~i~~-~~~~g~~~v~in~v~~~g~N~~--ei~~l~~~a~~ 72 (172)
|.++|++ +++|||||++++.|+++. + ..++++++++++. +.+.|. +|++++++++|+|++ ++.++++|+++
T Consensus 227 L~~~gl~~~LaiSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~~g~-~V~ieyvLI~GvNDs~eda~~L~~~l~~ 305 (368)
T PRK14456 227 LATSGLKTKLAVSLHSADQEKRERLMPQAARDYPLDELREALIGYASKTGE-PVTLVYMLLEGINDSPEDARKLIRFASR 305 (368)
T ss_pred HHHcCCCceEEEEecCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHhcCC-eEEEEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4688996 899999999999999995 2 3489999999985 457786 899999999999997 59999999999
Q ss_pred CCCeEEEEeeeeCCCCCCCCCCCCCHHHHHHHHHHh
Q psy5052 73 RPIDVRFIEYMPFSGNQWNNTKIMPFSEMLTKIKEA 108 (172)
Q Consensus 73 ~g~~~~~i~~~p~g~~~~~~~~~~~~~e~~~~l~~~ 108 (172)
+++.+++|+|+|++..+|.....-..++|.+.|++.
T Consensus 306 ~~~~VnlIpyn~~~~~~~~~ps~e~i~~F~~~L~~~ 341 (368)
T PRK14456 306 FFCKINLIDYNSIVNIKFEPVCSSTRERFRDRLLDA 341 (368)
T ss_pred CCCeeEEeeeccCCCCCCCCCCHHHHHHHHHHHHHC
Confidence 999999999999998877654434455676767653
No 15
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=99.57 E-value=1.2e-14 Score=123.09 Aligned_cols=80 Identities=20% Similarity=0.365 Sum_probs=70.6
Q ss_pred ChhcCCCeEEEeeeCCCHhhhcccc----CCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCe
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFIT----RRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPID 76 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~----g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~ 76 (172)
|++.++ .|+|||||. ++.|++.| |.++|++|+++|+.+++.|+ .+.+++|+++ .|.+++.++++|++++|+.
T Consensus 121 l~~~~~-~v~ISlDG~-~~~hD~~R~~~~g~gsf~~v~~~i~~l~~~gi-~~~i~~vv~~-~n~~~~~e~~~~~~~lg~~ 196 (412)
T PRK13745 121 FRENNF-LVGVSIDGP-QEFHDEYRKNKMGKPSFVKVMKGINLLKKHGV-EWNAMAVVND-FNADYPLDFYHFFKELDCH 196 (412)
T ss_pred HHHcCe-EEEEEecCC-HHHhhhhcCCCCCCccHHHHHHHHHHHHHcCC-CEEEEEEEcC-CccccHHHHHHHHHHcCCC
Confidence 467787 899999998 57899887 45699999999999999999 8999999999 8999999999999999995
Q ss_pred -EEEEeeee
Q psy5052 77 -VRFIEYMP 84 (172)
Q Consensus 77 -~~~i~~~p 84 (172)
+.|+.++|
T Consensus 197 ~~~~~p~~~ 205 (412)
T PRK13745 197 YIQFAPIVE 205 (412)
T ss_pred eEEEEeccC
Confidence 57777666
No 16
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.51 E-value=1.7e-13 Score=110.52 Aligned_cols=106 Identities=25% Similarity=0.436 Sum_probs=89.0
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCC--CCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCe--
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRR--KGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPID-- 76 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~--~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~-- 76 (172)
|.+||||++|+|+||+||..-+++.|. .+.++|++.++.+.++|+ .|-|.-|+++|.||+|++++++||++.|+.
T Consensus 210 LeeAGLdRiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~a~i-dvlIaPv~lPG~ND~E~~~iIe~A~~iGaGkk 288 (414)
T COG2100 210 LEEAGLDRINLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIANAGI-DVLIAPVWLPGVNDDEMPKIIEWAREIGAGKK 288 (414)
T ss_pred HHHhCCceEEeecccCCHHHHHHhcCccccCHHHHHHHHHHHHhCCC-CEEEeeeecCCcChHHHHHHHHHHHHhCCCCC
Confidence 578999999999999999999999885 379999999999999999 899999999999999999999999999874
Q ss_pred ---EEEEeeeeCCCCCC-CCCCCCCHHHHHHHHHH
Q psy5052 77 ---VRFIEYMPFSGNQW-NNTKIMPFSEMLTKIKE 107 (172)
Q Consensus 77 ---~~~i~~~p~g~~~~-~~~~~~~~~e~~~~l~~ 107 (172)
+-+..|.|+..+.. .....++..||...|++
T Consensus 289 ~p~lgiQkyipyk~GRkp~~~k~~~fkeFYrwLre 323 (414)
T COG2100 289 WPPLGIQKYIPYKFGRKPVIAKVWPFKEFYRWLRE 323 (414)
T ss_pred CCCcceEEeeeecccCCccccccCcHHHHHHHHHH
Confidence 23456777654321 12457889998777654
No 17
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.50 E-value=1.5e-13 Score=114.46 Aligned_cols=107 Identities=16% Similarity=0.245 Sum_probs=91.4
Q ss_pred ChhcCCC-eEEEeeeCCCHhhhccccCC---CCHHHHHHHHHHHH-HcCCCcEEEEEEEecCCCHH--HHHHHHHHHhcC
Q psy5052 1 YKKAGLD-SINISLDTLKPDKYEFITRR---KGWSRVLAGIDLAV-QLGYDNLKVNVVVMKNFNDD--EILDFVLLTRDR 73 (172)
Q Consensus 1 L~~aGl~-~v~iSlds~~~e~~~~i~g~---~~~~~vl~~i~~~~-~~g~~~v~in~v~~~g~N~~--ei~~l~~~a~~~ 73 (172)
|++.+++ .++||||+++++.|+++.+. .++++++++++.+. +.|. +|+|++|+++|+||+ ++.+++++++.+
T Consensus 231 la~~~l~~~LavSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~gr-rv~ieyvLi~GvNDs~e~a~~L~~llk~~ 309 (373)
T PRK14459 231 LADEGLPVTLAVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGR-RVSIEYALIRDINDQPWRADLLGKKLHGR 309 (373)
T ss_pred HHHhcCCeEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCC-EEEEEEEEeCCCCCCHHHHHHHHHHHhhc
Confidence 3566776 79999999999999999873 47999999977776 7797 899999999999997 588899999988
Q ss_pred ---CCeEEEEeeeeCCCCCCCCCCCCCHHHHHHHHHHh
Q psy5052 74 ---PIDVRFIEYMPFSGNQWNNTKIMPFSEMLTKIKEA 108 (172)
Q Consensus 74 ---g~~~~~i~~~p~g~~~~~~~~~~~~~e~~~~l~~~ 108 (172)
.+.|++|+|+|++..+|..+......+|.+.|++.
T Consensus 310 ~~~~~~VNLIpyNp~~~~~y~~~~~~~~~~F~~~L~~~ 347 (373)
T PRK14459 310 GGGWVHVNLIPLNPTPGSKWTASPPEVEREFVRRLRAA 347 (373)
T ss_pred cCCCeEEEEEccCCCCCCCCcCCCHHHHHHHHHHHHHC
Confidence 68999999999998778776666777888888874
No 18
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=99.49 E-value=5.2e-13 Score=109.79 Aligned_cols=103 Identities=19% Similarity=0.301 Sum_probs=87.2
Q ss_pred hcCCCeEEEeeeCCCHhhhccccCC---CCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCe-EE
Q psy5052 3 KAGLDSINISLDTLKPDKYEFITRR---KGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPID-VR 78 (172)
Q Consensus 3 ~aGl~~v~iSlds~~~e~~~~i~g~---~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~-~~ 78 (172)
+++++.+.||||++++++|++++|+ ++|++++++|+.+.+.|. ++.|++++++|.|+++++++++|+++.+++ +.
T Consensus 177 ~~~~d~i~VSLda~~~e~~~~i~~~~~~~~~~~vl~~L~~l~~~~~-~~~ir~tlv~g~Nd~e~~~~a~l~~~~~~~~Ie 255 (322)
T PRK13762 177 EEEPTQLYVSLDAPDEETYKKINRPVIPDAWERILETLELLPSKKT-RTVIRITLVKGYNMHDPEGFAKLIERANPDFVE 255 (322)
T ss_pred HhcCCEEEEEccCCCHHHHHHHhCCCCCCcHHHHHHHHHHHHhCCC-CEEEEEEEECCcCccHHHHHHHHHHHcCCCEEE
Confidence 4588999999999999999999864 589999999999999998 899999999999999999999999999885 57
Q ss_pred EEeeeeCCCCCC--CCCCCCCHHHHHHHHH
Q psy5052 79 FIEYMPFSGNQW--NNTKIMPFSEMLTKIK 106 (172)
Q Consensus 79 ~i~~~p~g~~~~--~~~~~~~~~e~~~~l~ 106 (172)
+..|+|+|.+.+ ..+..++.+|+.+..+
T Consensus 256 l~~y~~~G~~k~~l~~~~~p~~eev~~~~~ 285 (322)
T PRK13762 256 VKAYMHVGYSRNRLTRDNMPSHEEVREFAK 285 (322)
T ss_pred EECCeECCCccccccccCCcCHHHHHHHHH
Confidence 778999998754 2345577777655543
No 19
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=99.44 E-value=3.5e-13 Score=112.76 Aligned_cols=105 Identities=14% Similarity=0.103 Sum_probs=83.3
Q ss_pred ChhcCCCeEEEeeeCCCHhhhcccc----CCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCC-
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFIT----RRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPI- 75 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~----g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~- 75 (172)
|++.++ .|.|||||. +|.||+.| |.++|+++++||+.+++.++ .+.+.+|+.+ .|.+...++.++..+.|.
T Consensus 110 l~~~~~-~IgISiDGp-~eihD~~R~~~~GkgTfd~i~~~i~~L~~~~v-~~~~~~vv~~-~n~~~~~ei~~~l~~~g~~ 185 (378)
T COG0641 110 LAEHDF-LIGISIDGP-EEIHDKYRVTKSGKGTFDRVMKGLELLQAHGV-DFNTLTVVNR-QNVLHPEEIYHFLKSEGSK 185 (378)
T ss_pred HHhcCc-eEEEeccCc-hHhccccccCCCCCccHHHHHHHHHHHHHcCC-cEEEEEEEch-hHhhCHHHHHHHHHHcccc
Confidence 467888 899999998 69999998 67899999999999999998 7999999998 899999999999999994
Q ss_pred eEEEEeeeeCCCCC-CCCCCCCCHHHHHHHHHHhC
Q psy5052 76 DVRFIEYMPFSGNQ-WNNTKIMPFSEMLTKIKEAH 109 (172)
Q Consensus 76 ~~~~i~~~p~g~~~-~~~~~~~~~~e~~~~l~~~~ 109 (172)
.++|++.++.+... ...+..++.+++.+.+...+
T Consensus 186 ~i~fip~~~~~~~~~~~~~~~~~~~~~~~fl~~~~ 220 (378)
T COG0641 186 FIQFIPLVESDNRGDSLLEFSVTAEEYGQFLIAIF 220 (378)
T ss_pred eEEEEecccCCCCCccccccccCHHHHHHHHHHHH
Confidence 35666665544432 11234567777766666554
No 20
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=99.43 E-value=1.6e-12 Score=111.02 Aligned_cols=85 Identities=20% Similarity=0.320 Sum_probs=73.5
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccc-----------cCCC----CHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHH
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFI-----------TRRK----GWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILD 65 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i-----------~g~~----~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~ 65 (172)
|+++|++.|+||||+++|++|++| +|.. .|++++++|+.+.+.|+ .++||+++++|+|++++.+
T Consensus 129 L~~~gvd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~-~v~v~~vlIpGiND~~i~~ 207 (442)
T TIGR01290 129 LVDLGVGHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGI-LVKVNSVLIPGINDEHLVE 207 (442)
T ss_pred HHHCCCCeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCC-eEEEEEEeeCCcCHHHHHH
Confidence 467899999999999999999876 3322 28899999999999998 8999999999999999999
Q ss_pred HHHHHhcCCCe-EEEEeeeeCC
Q psy5052 66 FVLLTRDRPID-VRFIEYMPFS 86 (172)
Q Consensus 66 l~~~a~~~g~~-~~~i~~~p~g 86 (172)
++++++++|+. ++++.+.|.+
T Consensus 208 l~~~~~~lg~~~~nl~p~~~~p 229 (442)
T TIGR01290 208 VSKQVKELGAFLHNVMPLISAP 229 (442)
T ss_pred HHHHHHhCCCcEEEeecCCCcc
Confidence 99999999985 4666776655
No 21
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.37 E-value=3.7e-12 Score=105.58 Aligned_cols=105 Identities=15% Similarity=0.251 Sum_probs=81.7
Q ss_pred hhcCCC-eEEEeeeCCCHhhhccccC---CCCHHHHHHHHHHHH-HcCCCcEEEEEEEecCCCHH--HHHHHHHHHhcCC
Q psy5052 2 KKAGLD-SINISLDTLKPDKYEFITR---RKGWSRVLAGIDLAV-QLGYDNLKVNVVVMKNFNDD--EILDFVLLTRDRP 74 (172)
Q Consensus 2 ~~aGl~-~v~iSlds~~~e~~~~i~g---~~~~~~vl~~i~~~~-~~g~~~v~in~v~~~g~N~~--ei~~l~~~a~~~g 74 (172)
.++++. .+.||||+++++.|++++. ...+++++++++.+. +.+. +|.|++++++|+|++ ++.+++++++++.
T Consensus 197 ~~~~l~~~LaiSL~a~d~e~r~~i~p~~~~~~l~~ll~~l~~~~~~~~~-~V~ieyvLI~GvNDs~e~~~~L~~ll~~~~ 275 (343)
T PRK14468 197 AEEDLGVRLALSLHAPDEETRQRIIPTAHRYSIAEIMAAVRHYQAVTGR-RVTLEYTMLKGVNDHLWQAELLADLLRGLV 275 (343)
T ss_pred HHhCcCcEEEEEcCCCCHHHHHHhccccccCCHHHHHHHHHHHHHhcCC-eEEEEEEEeCCCcCCHHHHHHHHHHHhcCC
Confidence 456766 6999999999999999973 247999999998666 4565 899999999999997 5899999999999
Q ss_pred CeEEEEeeeeCCCCCCCCCCCCCHHHHHHHHHH
Q psy5052 75 IDVRFIEYMPFSGNQWNNTKIMPFSEMLTKIKE 107 (172)
Q Consensus 75 ~~~~~i~~~p~g~~~~~~~~~~~~~e~~~~l~~ 107 (172)
+.+++|+|+|+....+.....-..+++.+.|++
T Consensus 276 ~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~ 308 (343)
T PRK14468 276 SHVNLIPFNPWEGSPFQSSPRAQILAFADVLER 308 (343)
T ss_pred cEEEEEcCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 999999999987643332222223345555554
No 22
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.34 E-value=7.6e-12 Score=104.08 Aligned_cols=106 Identities=14% Similarity=0.178 Sum_probs=83.9
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCC---CCHHHHHHHHHHHH-HcCCCcEEEEEEEecCCCHH--HHHHHHHHHhcCC
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRR---KGWSRVLAGIDLAV-QLGYDNLKVNVVVMKNFNDD--EILDFVLLTRDRP 74 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~---~~~~~vl~~i~~~~-~~g~~~v~in~v~~~g~N~~--ei~~l~~~a~~~g 74 (172)
|+++|+..++||||+++++.|+++.+. ..+++++++++.+. +.|- +|++++++++|+|++ ++.++++|+++++
T Consensus 208 L~~~~l~~L~iSLha~~~e~r~~i~p~~~~~~l~~ll~al~~~~~~~~~-~v~iey~LI~GvNDs~ed~~~l~~~l~~~~ 286 (354)
T PRK14460 208 LGESGLAFLAVSLHAPNQELRERIMPKAARWPLDDLIAALKSYPLKTRE-RVTFEYLLLGGVNDSLEHARELVRLLSRTK 286 (354)
T ss_pred HHhCCCcEEEEeCCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhcCC-eEEEEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 467888899999999999999999754 37999999998765 5665 899999999999996 7999999999999
Q ss_pred CeEEEEeeeeCCCCCCCCCCCCCHHHHHHHHHH
Q psy5052 75 IDVRFIEYMPFSGNQWNNTKIMPFSEMLTKIKE 107 (172)
Q Consensus 75 ~~~~~i~~~p~g~~~~~~~~~~~~~e~~~~l~~ 107 (172)
..|++|+|+|+.+..+..+..-..+++.+.+++
T Consensus 287 ~~VnLIpyn~~~g~~y~~p~~e~v~~f~~~l~~ 319 (354)
T PRK14460 287 CKLNLIVYNPAEGLPYSAPTEERILAFEKYLWS 319 (354)
T ss_pred CcEEEEcCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 999999999986655543222223345555544
No 23
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.33 E-value=1e-11 Score=103.39 Aligned_cols=104 Identities=13% Similarity=0.223 Sum_probs=82.8
Q ss_pred hcCCC-eEEEeeeCCCHhhhccccC---CCCHHHHHHHHHHHHH-cCCCcEEEEEEEecCCCH--HHHHHHHHHHhcCCC
Q psy5052 3 KAGLD-SINISLDTLKPDKYEFITR---RKGWSRVLAGIDLAVQ-LGYDNLKVNVVVMKNFND--DEILDFVLLTRDRPI 75 (172)
Q Consensus 3 ~aGl~-~v~iSlds~~~e~~~~i~g---~~~~~~vl~~i~~~~~-~g~~~v~in~v~~~g~N~--~ei~~l~~~a~~~g~ 75 (172)
+.++. .+.||||+++++.|+++++ +.++++++++++.+.+ .+. +|++++++++|+|+ +++.++++|+++++.
T Consensus 214 d~~l~~~LaiSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~~~~-~v~iey~lI~gvNDs~ed~~~La~ll~~l~~ 292 (356)
T PRK14455 214 DEGLQINLAISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEKTNR-RVTFEYILLGGVNDQVEHAEELADLLKGIKC 292 (356)
T ss_pred hcccCeeEEeccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCC-eEEEEEEEeCCCCCCHHHHHHHHHHHhcCCC
Confidence 34443 3569999999999998765 3479999999998876 555 89999999999999 589999999999999
Q ss_pred eEEEEeeeeCCCCCCCCCCCCCHHHHHHHHHH
Q psy5052 76 DVRFIEYMPFSGNQWNNTKIMPFSEMLTKIKE 107 (172)
Q Consensus 76 ~~~~i~~~p~g~~~~~~~~~~~~~e~~~~l~~ 107 (172)
.+++++|+|++..+|..+..-...++.+.+.+
T Consensus 293 ~VnLIPynp~~~~ky~~ps~e~l~~f~~~L~~ 324 (356)
T PRK14455 293 HVNLIPVNPVPERDYVRTPKEDIFAFEDTLKK 324 (356)
T ss_pred cEEEEecCcCCCCCCcCCCHHHHHHHHHHHHH
Confidence 99999999999877764333334455555554
No 24
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=99.32 E-value=1.6e-11 Score=102.24 Aligned_cols=105 Identities=14% Similarity=0.240 Sum_probs=83.3
Q ss_pred hhcCCC-eEEEeeeCCCHhhhccccCC---CCHHHHHHHHHHHH-HcCCCcEEEEEEEecCCCH--HHHHHHHHHHhcCC
Q psy5052 2 KKAGLD-SINISLDTLKPDKYEFITRR---KGWSRVLAGIDLAV-QLGYDNLKVNVVVMKNFND--DEILDFVLLTRDRP 74 (172)
Q Consensus 2 ~~aGl~-~v~iSlds~~~e~~~~i~g~---~~~~~vl~~i~~~~-~~g~~~v~in~v~~~g~N~--~ei~~l~~~a~~~g 74 (172)
.+.+++ .+.||||+++++.|+++.+. .++++++++++.+. +.|. +|.|++++++|+|| +++.++++++++++
T Consensus 209 ~~~~l~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~-~VtieyvLI~GvNDs~e~a~~La~llk~l~ 287 (355)
T TIGR00048 209 ADKMLQVALAISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGR-RVTFEYVLLDGVNDQVEHAEELAELLKGTK 287 (355)
T ss_pred HHhCCCcEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCC-EEEEEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 455666 57899999999999999753 36999999998764 6786 89999999999998 58999999999999
Q ss_pred CeEEEEeeeeCCCCCCCCCCCCCHHHHHHHHHH
Q psy5052 75 IDVRFIEYMPFSGNQWNNTKIMPFSEMLTKIKE 107 (172)
Q Consensus 75 ~~~~~i~~~p~g~~~~~~~~~~~~~e~~~~l~~ 107 (172)
+.+++++|+|++...+..+..-..+++.+.|++
T Consensus 288 ~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~ 320 (355)
T TIGR00048 288 CKVNLIPWNPFPEADYERPSNEQIDRFAKTLMS 320 (355)
T ss_pred CceEEEecccCCCCCCCCCCHHHHHHHHHHHHH
Confidence 999999999998766643322233345555544
No 25
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.26 E-value=4.6e-11 Score=98.73 Aligned_cols=100 Identities=14% Similarity=0.200 Sum_probs=82.9
Q ss_pred eEEEeeeCCCHhhhccccCC---CCHHHHHHHHHHHHH-cCCCcEEEEEEEecCCCHH--HHHHHHHHHhcCCCeEEEEe
Q psy5052 8 SINISLDTLKPDKYEFITRR---KGWSRVLAGIDLAVQ-LGYDNLKVNVVVMKNFNDD--EILDFVLLTRDRPIDVRFIE 81 (172)
Q Consensus 8 ~v~iSlds~~~e~~~~i~g~---~~~~~vl~~i~~~~~-~g~~~v~in~v~~~g~N~~--ei~~l~~~a~~~g~~~~~i~ 81 (172)
.++||||+++++.+++|... .++++++++++.+.+ .| .+|++++++++|+||+ ++.+|+++++.+++.|++|+
T Consensus 208 ~LavSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~-rri~~Ey~Li~gvND~~e~a~~L~~ll~~~~~~VNLIp 286 (345)
T PRK14466 208 HLAISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQ-RRVSFEYIVFKGLNDSLKHAKELVKLLRGIDCRVNLIR 286 (345)
T ss_pred EEEEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhC-CEEEEEEEEeCCCCCCHHHHHHHHHHHcCCCceEEEEe
Confidence 57899999999999999753 379999999999874 45 4899999999999996 59999999999999999999
Q ss_pred eeeCCCCCCCCCCCCCHHHHHHHHHHh
Q psy5052 82 YMPFSGNQWNNTKIMPFSEMLTKIKEA 108 (172)
Q Consensus 82 ~~p~g~~~~~~~~~~~~~e~~~~l~~~ 108 (172)
|+|.++..+.++..-..++|.+.|++.
T Consensus 287 ~Np~~~~~~~~~s~~~~~~F~~~L~~~ 313 (345)
T PRK14466 287 FHAIPGVDLEGSDMARMEAFRDYLTSH 313 (345)
T ss_pred cCCCCCCCCcCCCHHHHHHHHHHHHHC
Confidence 999877655544444455677777764
No 26
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.24 E-value=7e-11 Score=98.05 Aligned_cols=86 Identities=19% Similarity=0.322 Sum_probs=74.7
Q ss_pred ChhcCCC-eEEEeeeCCCHhhhccccC---CCCHHHHHHHHHHHHHc-CCCcEEEEEEEecCCCHH--HHHHHHHHHhcC
Q psy5052 1 YKKAGLD-SINISLDTLKPDKYEFITR---RKGWSRVLAGIDLAVQL-GYDNLKVNVVVMKNFNDD--EILDFVLLTRDR 73 (172)
Q Consensus 1 L~~aGl~-~v~iSlds~~~e~~~~i~g---~~~~~~vl~~i~~~~~~-g~~~v~in~v~~~g~N~~--ei~~l~~~a~~~ 73 (172)
|.++|++ .++||||+++++.|++++. ..+++.++++++.+.+. +. ++.+++++++|.|++ |+.+++++++++
T Consensus 201 L~~~~l~~~LaiSL~a~~~e~r~~i~p~~~~~~l~~Il~~l~~~~~~~~~-~v~i~yvlI~g~NDs~ed~~~La~llk~~ 279 (343)
T PRK14469 201 LAEEGLDVKLALSLHAPTNFKRDQIVPLNKKYSIEEIINAVKIYQKKTGN-RVTIEYILIKGFNDEIEDAKKLAELLKGL 279 (343)
T ss_pred HHhhCCCcEEEEEeCCCCHHHHHhhcCcCCCCCHHHHHHHHHHHHHHhCC-eEEEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4577888 7999999999999999863 35899999999988754 65 899999999999985 799999999999
Q ss_pred CCeEEEEeeeeCCC
Q psy5052 74 PIDVRFIEYMPFSG 87 (172)
Q Consensus 74 g~~~~~i~~~p~g~ 87 (172)
++.++++.|.|...
T Consensus 280 ~~~VnLIpynp~~~ 293 (343)
T PRK14469 280 KVFVNLIPVNPTVP 293 (343)
T ss_pred CcEEEEEecCCCCc
Confidence 99999999988755
No 27
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.23 E-value=8.1e-11 Score=97.27 Aligned_cols=102 Identities=14% Similarity=0.129 Sum_probs=83.5
Q ss_pred hcCC-CeEEEeeeCCCHhhhccccCC---CCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHH--HHHHHHHHHhcCCCe
Q psy5052 3 KAGL-DSINISLDTLKPDKYEFITRR---KGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDD--EILDFVLLTRDRPID 76 (172)
Q Consensus 3 ~aGl-~~v~iSlds~~~e~~~~i~g~---~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~--ei~~l~~~a~~~g~~ 76 (172)
+.|+ ..+.||||+++++.|++|... .+++.++++++.+.+.+. ++.+++|+++|+|++ ++.++.+|++.+.+.
T Consensus 199 ~~~~~~~LaiSLhA~~~e~r~~I~p~~~~~~le~il~ai~~~~~~~r-ri~ieyvLI~GvNDseeda~~La~llk~l~~~ 277 (336)
T PRK14470 199 AEGHKFRLCISLNAAIPWKRRALMPIEQGFPLDELVEAIREHAALRG-RVTLEYVMISGVNVGEEDAAALGRLLAGIPVR 277 (336)
T ss_pred hcCCCceEEEecCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhCC-CeEEEEEEEecccCCHHHHHHHHHHHhcCCCe
Confidence 3454 689999999999999999653 479999999999998886 899999999999986 599999999999999
Q ss_pred EEEEeeeeCCCCCCCCCCCCCHHHHHHHHH
Q psy5052 77 VRFIEYMPFSGNQWNNTKIMPFSEMLTKIK 106 (172)
Q Consensus 77 ~~~i~~~p~g~~~~~~~~~~~~~e~~~~l~ 106 (172)
+++|+|+|..+ .+.++..-..++|.+.|+
T Consensus 278 vnlI~~N~~~~-~~~~p~~~~i~~f~~~l~ 306 (336)
T PRK14470 278 LNPIAVNDATG-RYRPPDEDEWNAFRDALA 306 (336)
T ss_pred EEEeccCCCCC-CccCCCHHHHHHHHHHHH
Confidence 99999999765 444333334556677775
No 28
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=99.21 E-value=7.3e-11 Score=98.88 Aligned_cols=104 Identities=18% Similarity=0.249 Sum_probs=86.5
Q ss_pred ChhcCCCeEEEeeeCCCHhhhcccc--C-CCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHH--HHHHHHHHHhcCCC
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFIT--R-RKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDD--EILDFVLLTRDRPI 75 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~--g-~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~--ei~~l~~~a~~~g~ 75 (172)
||+||++++++++++.+++.|.+++ | ..+|++++++|+.++++|+ + +|++.++.|.+.. |+.+++..++.+++
T Consensus 169 Lk~aGv~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~-~-~v~~g~i~Glge~~~d~~~~a~~l~~L~~ 246 (371)
T PRK09240 169 LVELGLDGVTVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGI-R-KIGLGALLGLSDWRTDALMTALHLRYLQR 246 (371)
T ss_pred HHHcCCCEEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCC-C-eeceEEEecCCccHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999997 3 3489999999999999999 4 8999999998875 35566665555553
Q ss_pred -------eEEEEeeeeCCCCCCCCCCCCCHHHHHHHHHH
Q psy5052 76 -------DVRFIEYMPFSGNQWNNTKIMPFSEMLTKIKE 107 (172)
Q Consensus 76 -------~~~~i~~~p~g~~~~~~~~~~~~~e~~~~l~~ 107 (172)
.+.|+++||..+ +|.....++..|+++.|..
T Consensus 247 ~~~~~~~sv~~~~l~P~~g-~~~~~~~~~~~e~l~~ia~ 284 (371)
T PRK09240 247 KYWQAEYSISFPRLRPCTG-GIEPASIVSDKQLVQLICA 284 (371)
T ss_pred hCCCCceeeecCccccCCC-CCCCCCCCCHHHHHHHHHH
Confidence 678999999976 7777778999998888654
No 29
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.19 E-value=1.9e-10 Score=95.54 Aligned_cols=100 Identities=17% Similarity=0.288 Sum_probs=79.0
Q ss_pred eEEEeeeCCCHhhhccccC---CCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCH--HHHHHHHHHHhcCCCeEEEEee
Q psy5052 8 SINISLDTLKPDKYEFITR---RKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFND--DEILDFVLLTRDRPIDVRFIEY 82 (172)
Q Consensus 8 ~v~iSlds~~~e~~~~i~g---~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~--~ei~~l~~~a~~~g~~~~~i~~ 82 (172)
.+.||||+++++.+++|.+ ...+++++++++.+.+.+..+|++++++++|.|+ +++.++++|++++++.+++|+|
T Consensus 208 ~LaiSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l~~~vnlIPy 287 (349)
T PRK14463 208 NLAVSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDIPSKVNLIPF 287 (349)
T ss_pred EEEEeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhccCceEEEEec
Confidence 3569999999999999854 3479999999988875432389999999999999 6899999999999999999999
Q ss_pred eeCCCCCCCCCCCCCHHHHHHHHHH
Q psy5052 83 MPFSGNQWNNTKIMPFSEMLTKIKE 107 (172)
Q Consensus 83 ~p~g~~~~~~~~~~~~~e~~~~l~~ 107 (172)
+|.++..+..+..-..++|.+.|++
T Consensus 288 n~~~~~~~~~ps~e~i~~f~~~L~~ 312 (349)
T PRK14463 288 NEHEGCDFRSPTQEAIDRFHKYLLD 312 (349)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 9987654443333334456666655
No 30
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.17 E-value=2.1e-10 Score=95.11 Aligned_cols=99 Identities=13% Similarity=0.175 Sum_probs=79.4
Q ss_pred eEEEeeeCCCHhhhccccCC---CCHHHHHHHHHHH-HHcCCCcEEEEEEEecCCCHH--HHHHHHHHHhcCCCeEEEEe
Q psy5052 8 SINISLDTLKPDKYEFITRR---KGWSRVLAGIDLA-VQLGYDNLKVNVVVMKNFNDD--EILDFVLLTRDRPIDVRFIE 81 (172)
Q Consensus 8 ~v~iSlds~~~e~~~~i~g~---~~~~~vl~~i~~~-~~~g~~~v~in~v~~~g~N~~--ei~~l~~~a~~~g~~~~~i~ 81 (172)
.+.||||+++++.|+++.+. ..+++++++++.. .+.|- +|.+++++++|+||+ ++.++++|++++++.|+++.
T Consensus 213 ~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr-~I~iey~LIpGvNDs~e~a~~La~~l~~l~~~VnLIP 291 (345)
T PRK14457 213 TLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGR-RVSFEYILLGGVNDLPEHAEELANLLRGFQSHVNLIP 291 (345)
T ss_pred EEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCC-EEEEEEEEECCcCCCHHHHHHHHHHHhcCCCeEEEec
Confidence 58899999999999999763 3699999888775 57786 899999999999995 79999999999999999999
Q ss_pred eeeCCCCCCCCCCCCCHHHHHHHHHH
Q psy5052 82 YMPFSGNQWNNTKIMPFSEMLTKIKE 107 (172)
Q Consensus 82 ~~p~g~~~~~~~~~~~~~e~~~~l~~ 107 (172)
|.|++..++..+..-..+++.+.+++
T Consensus 292 ynp~~~~~~~~ps~e~i~~f~~~L~~ 317 (345)
T PRK14457 292 YNPIDEVEFQRPSPKRIQAFQRVLEQ 317 (345)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 99998766654333334445555554
No 31
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.17 E-value=2.4e-10 Score=94.96 Aligned_cols=99 Identities=14% Similarity=0.237 Sum_probs=80.7
Q ss_pred eEEEeeeCCCHhhhccccCCC---CHHHHHHHHHHHH-HcCCCcEEEEEEEecCCCHH--HHHHHHHHHhcCCCeEEEEe
Q psy5052 8 SINISLDTLKPDKYEFITRRK---GWSRVLAGIDLAV-QLGYDNLKVNVVVMKNFNDD--EILDFVLLTRDRPIDVRFIE 81 (172)
Q Consensus 8 ~v~iSlds~~~e~~~~i~g~~---~~~~vl~~i~~~~-~~g~~~v~in~v~~~g~N~~--ei~~l~~~a~~~g~~~~~i~ 81 (172)
.+.|||++++++.|+++++.+ .++.++++++.+. +.|- +|.|++++++|+||+ ++..+++|++.+++.|++|.
T Consensus 221 ~LaiSLha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~-~i~ieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIP 299 (356)
T PRK14462 221 QLAISLHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRK-RVMFEYLVIKDVNDDLKSAKKLVKLLNGIKAKVNLIL 299 (356)
T ss_pred EEEEECCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCC-eEEEEEEEECCCCCCHHHHHHHHHHHhhcCcEEEEEe
Confidence 467899999999999998743 5799999998665 7786 899999999999986 69999999999999999999
Q ss_pred eeeCCCCCCCCCCCCCHHHHHHHHHH
Q psy5052 82 YMPFSGNQWNNTKIMPFSEMLTKIKE 107 (172)
Q Consensus 82 ~~p~g~~~~~~~~~~~~~e~~~~l~~ 107 (172)
|.|++..+|..+..-..++|.+.|++
T Consensus 300 yn~~~~~~~~~ps~e~i~~f~~~l~~ 325 (356)
T PRK14462 300 FNPHEGSKFERPSLEDMIKFQDYLNS 325 (356)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 99998877754433344455556655
No 32
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=99.14 E-value=8e-10 Score=93.34 Aligned_cols=105 Identities=10% Similarity=0.089 Sum_probs=81.5
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCH-HHHHHHHHHHhcCCCe-EE
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFND-DEILDFVLLTRDRPID-VR 78 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~-~ei~~l~~~a~~~g~~-~~ 78 (172)
|+++|++.++||+|+++|+.|++++|....++++++++++.+ ++ .+.+++++++|+|+ +|+.+++++++++|+. +.
T Consensus 124 L~~~gld~v~iSvka~dpe~h~kl~G~~~a~~ILe~L~~L~e-~~-~v~~~ivlIPGiND~eel~~ti~~L~~lg~~~V~ 201 (404)
T TIGR03278 124 LIDNGVREVSFTVFATDPELRREWMKDPTPEASLQCLRRFCE-SC-EVHAASVIIPGVNDGDVLWKTCADLESWGAKALI 201 (404)
T ss_pred HHHcCCCEEEEecccCCHHHHHHHhCCCCHHHHHHHHHHHHh-cC-CEEEEEEEeCCccCcHHHHHHHHHHHHCCCCEEE
Confidence 467899999999999999999999986556999999999998 56 79999999999999 6788999999999985 45
Q ss_pred EEeeeeCCCC------CCCCC--CCCCHHHHHHHHHH
Q psy5052 79 FIEYMPFSGN------QWNNT--KIMPFSEMLTKIKE 107 (172)
Q Consensus 79 ~i~~~p~g~~------~~~~~--~~~~~~e~~~~l~~ 107 (172)
+..|-+.|.. .+..+ ...+.+++.+.+++
T Consensus 202 L~~y~~~g~~ky~lg~~~~~~~~~~~~~~e~~~~v~~ 238 (404)
T TIGR03278 202 LMRFANTEEQGLILGNAPIIPGIKPHTVSEFKNIVRE 238 (404)
T ss_pred EEecccccccccccCCcCcccCCCCCCHHHHHHHHHH
Confidence 5555544432 11111 24567777666544
No 33
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=99.14 E-value=4.3e-10 Score=88.26 Aligned_cols=82 Identities=13% Similarity=0.248 Sum_probs=68.9
Q ss_pred CCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCC--CHHHHHHHHHHHhcCCC--eEEEE
Q psy5052 5 GLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNF--NDDEILDFVLLTRDRPI--DVRFI 80 (172)
Q Consensus 5 Gl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~--N~~ei~~l~~~a~~~g~--~~~~i 80 (172)
.++.+.||+|+.+++.|++++|. +|++++++|+.+++.|+ ++.+++++++|. |.+|+.++++|++++|. .+.+.
T Consensus 118 ~~d~v~isl~~~~~~~~~~~~g~-~~~~v~~~i~~l~~~g~-~~~v~~vv~~~~~~n~~ei~~l~~~~~~l~~~~~~~~~ 195 (235)
T TIGR02493 118 YTDLVLLDIKHFNPEKYKKLTGV-SLQPTLDFAKYLAKRNK-PIWIRYVLVPGYTDSEEDIEALAEFVKTLPNVERVEVL 195 (235)
T ss_pred hCCEEEEeCCCCCHHHHHHHHCC-CcHHHHHHHHHHHhCCC-cEEEEEeeeCCcCCCHHHHHHHHHHHHhCCCCceEEec
Confidence 36789999999999999999876 89999999999999998 899999999875 56799999999999985 23455
Q ss_pred eeeeCCCC
Q psy5052 81 EYMPFSGN 88 (172)
Q Consensus 81 ~~~p~g~~ 88 (172)
.+.|.|+.
T Consensus 196 p~~~~g~~ 203 (235)
T TIGR02493 196 PYHQLGVY 203 (235)
T ss_pred CCCcccHH
Confidence 55555543
No 34
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=99.12 E-value=5.2e-10 Score=88.51 Aligned_cols=79 Identities=15% Similarity=0.197 Sum_probs=66.6
Q ss_pred CCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHH--HHHHHHHHHhcCCCeEEEEee
Q psy5052 5 GLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDD--EILDFVLLTRDRPIDVRFIEY 82 (172)
Q Consensus 5 Gl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~--ei~~l~~~a~~~g~~~~~i~~ 82 (172)
.+|.|+||||+++++.|++++|. ..++++++++.+.+.|+ ++.+++++++|.|++ |+.++++|+++++ .+..+++
T Consensus 123 ~~d~v~islk~~~~e~~~~~~g~-~~~~~l~~i~~l~~~g~-~v~i~~~li~g~nd~~~ei~~l~~~l~~l~-~~~~~~l 199 (246)
T PRK11145 123 VTDLVMLDLKQMNDEIHQNLVGV-SNHRTLEFARYLAKRNQ-KTWIRYVVVPGWTDDDDSAHRLGEFIKDMG-NIEKIEL 199 (246)
T ss_pred hCCEEEECCCcCChhhcccccCC-ChHHHHHHHHHHHhCCC-cEEEEEEEECCCCCCHHHHHHHHHHHHhcC-CcceEEE
Confidence 47889999999999999999985 56899999999999998 899999999999985 7999999999876 2334444
Q ss_pred eeCC
Q psy5052 83 MPFS 86 (172)
Q Consensus 83 ~p~g 86 (172)
+|+.
T Consensus 200 ~~~~ 203 (246)
T PRK11145 200 LPYH 203 (246)
T ss_pred ecCC
Confidence 4443
No 35
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=99.10 E-value=6.2e-10 Score=92.39 Aligned_cols=99 Identities=15% Similarity=0.232 Sum_probs=77.0
Q ss_pred eEEEeeeCCCHhhhccccCC---CCHHHHHHHHHHHHH-cCCCcEEEEEEEecCCCHH--HHHHHHHHHhcC-----CCe
Q psy5052 8 SINISLDTLKPDKYEFITRR---KGWSRVLAGIDLAVQ-LGYDNLKVNVVVMKNFNDD--EILDFVLLTRDR-----PID 76 (172)
Q Consensus 8 ~v~iSlds~~~e~~~~i~g~---~~~~~vl~~i~~~~~-~g~~~v~in~v~~~g~N~~--ei~~l~~~a~~~-----g~~ 76 (172)
.+.||||+++++.|+++.+. ..++.++++++.+.+ .|. +|.+++++++|+||+ ++.++++|++++ ...
T Consensus 206 ~LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~~~~~-~V~iry~LI~GvNDs~e~a~~L~~~lk~l~~~~~~~~ 284 (347)
T PRK14453 206 NLTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIRHTGR-KVYIAYIMLEGVNDSKEHAEAVVGLLRNRGSWEHLYH 284 (347)
T ss_pred CEEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHHhcCC-cEEEEEEeECCCCCCHHHHHHHHHHHhhccccCCcce
Confidence 46789999999999999753 379999999988875 786 899999999999998 899999999987 467
Q ss_pred EEEEeeeeCCCCC--CCCCCCCCHHHHHHHHHH
Q psy5052 77 VRFIEYMPFSGNQ--WNNTKIMPFSEMLTKIKE 107 (172)
Q Consensus 77 ~~~i~~~p~g~~~--~~~~~~~~~~e~~~~l~~ 107 (172)
+++|+|+|++... +..+..-...+|.+.+++
T Consensus 285 VnLIPyn~~~~~~~~~~~ps~e~v~~f~~~L~~ 317 (347)
T PRK14453 285 VNLIPYNSTDKTPFKFQSSSAGQIKQFCSTLKS 317 (347)
T ss_pred EEEecCCCCCCCCccCCCCCHHHHHHHHHHHHH
Confidence 9999999998642 322222223345555554
No 36
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=99.09 E-value=4e-10 Score=91.44 Aligned_cols=84 Identities=17% Similarity=0.344 Sum_probs=72.8
Q ss_pred CCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCH--HHHHHHHHHHhcCC--C-eEEE
Q psy5052 5 GLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFND--DEILDFVLLTRDRP--I-DVRF 79 (172)
Q Consensus 5 Gl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~--~ei~~l~~~a~~~g--~-~~~~ 79 (172)
.++.+.||+|+.++++|++++|. +++.++++|+.+.+.|. ++.|++++++|.|+ ++++++++|+++++ + .+++
T Consensus 176 ~~d~~~isl~~~~~~~~~~~~g~-~~~~vl~~i~~l~~~~~-~~~i~~~~v~~~n~~~~ei~~l~~~~~~~~~~v~~v~l 253 (295)
T TIGR02494 176 YVDLFLFDIKHLDDERHKEVTGV-DNEPILENLEALAAAGK-NVVIRIPVIPGFNDSEENIEAIAAFLRKLEPGVDEIDL 253 (295)
T ss_pred hCCEEEEeeccCChHHHHHHhCC-ChHHHHHHHHHHHhCCC-cEEEEeceeCCcCCCHHHHHHHHHHHHHhccCCceEEe
Confidence 36778999999999999999985 69999999999999998 89999999998775 58999999999998 4 5677
Q ss_pred EeeeeCCCCCC
Q psy5052 80 IEYMPFSGNQW 90 (172)
Q Consensus 80 i~~~p~g~~~~ 90 (172)
+.+.|.|..+|
T Consensus 254 ~~~~~~g~~~~ 264 (295)
T TIGR02494 254 LPYHRLGENKY 264 (295)
T ss_pred cCCCchhHHHH
Confidence 77788876554
No 37
>PRK07094 biotin synthase; Provisional
Probab=99.08 E-value=1.8e-09 Score=88.69 Aligned_cols=104 Identities=16% Similarity=0.295 Sum_probs=86.8
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEE-ecCCCHHHHHHHHHHHhcCCCe-EE
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVV-MKNFNDDEILDFVLLTRDRPID-VR 78 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~-~~g~N~~ei~~l~~~a~~~g~~-~~ 78 (172)
|++||++++.+++++.+++.|+.+++..++++.+++++.++++|+ .+...+++ ++|.|.+++.+.++++++++++ +.
T Consensus 135 Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi-~v~~~~iiGlpget~ed~~~~l~~l~~l~~~~v~ 213 (323)
T PRK07094 135 WKEAGADRYLLRHETADKELYAKLHPGMSFENRIACLKDLKELGY-EVGSGFMVGLPGQTLEDLADDILFLKELDLDMIG 213 (323)
T ss_pred HHHcCCCEEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCC-eecceEEEECCCCCHHHHHHHHHHHHhCCCCeee
Confidence 689999999999999999999999987799999999999999999 67776655 4788999999999999999985 57
Q ss_pred EEeeeeCCCCCCCCCCCCCHHHHHHHH
Q psy5052 79 FIEYMPFSGNQWNNTKIMPFSEMLTKI 105 (172)
Q Consensus 79 ~i~~~p~g~~~~~~~~~~~~~e~~~~l 105 (172)
+..++|.++.+.......+.++.++.+
T Consensus 214 ~~~~~P~pgTpl~~~~~~~~~~~~~~~ 240 (323)
T PRK07094 214 IGPFIPHPDTPLKDEKGGSLELTLKVL 240 (323)
T ss_pred eeccccCCCCCcccCCCCCHHHHHHHH
Confidence 788899887654333456666655443
No 38
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.08 E-value=8.8e-10 Score=91.58 Aligned_cols=100 Identities=14% Similarity=0.202 Sum_probs=83.9
Q ss_pred eEEEeeeCCCHhhhccccC---CCCHHHHHHHHHHHH-HcCCCcEEEEEEEecCCCHH--HHHHHHHHHhcC------CC
Q psy5052 8 SINISLDTLKPDKYEFITR---RKGWSRVLAGIDLAV-QLGYDNLKVNVVVMKNFNDD--EILDFVLLTRDR------PI 75 (172)
Q Consensus 8 ~v~iSlds~~~e~~~~i~g---~~~~~~vl~~i~~~~-~~g~~~v~in~v~~~g~N~~--ei~~l~~~a~~~------g~ 75 (172)
.+.||||+.+++.+++|.. ...+++++++++.+. +.| ++|++++++++|+||+ ++.+|+++++.+ .+
T Consensus 229 ~LAiSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~-rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~ 307 (371)
T PRK14461 229 NLAISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTR-RRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLV 307 (371)
T ss_pred eEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhC-CEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCce
Confidence 5789999999999999953 348999999999997 456 4899999999999996 799999999988 78
Q ss_pred eEEEEeeeeCCCCCCCCCCCCCHHHHHHHHHHh
Q psy5052 76 DVRFIEYMPFSGNQWNNTKIMPFSEMLTKIKEA 108 (172)
Q Consensus 76 ~~~~i~~~p~g~~~~~~~~~~~~~e~~~~l~~~ 108 (172)
.|++|.|+|+.+..+.++..-...+|.+.|++.
T Consensus 308 ~VNLIp~Np~~~~~~~~ps~~~i~~F~~~L~~~ 340 (371)
T PRK14461 308 HVNLIPWNPVPGTPLGRSERERVTTFQRILTDY 340 (371)
T ss_pred EEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHC
Confidence 999999999877666655555566788888764
No 39
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=99.08 E-value=3.2e-09 Score=86.00 Aligned_cols=104 Identities=18% Similarity=0.231 Sum_probs=84.5
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCe-EEE
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPID-VRF 79 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~-~~~ 79 (172)
|++||++.+.++++ .+++.|+++++..++++.+++++.++++|+ ++...+++=-|.+.+++.++++++++++++ +.+
T Consensus 129 Lk~aG~~~v~i~~E-~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi-~v~~~~i~Gl~et~~d~~~~~~~l~~l~~~~i~l 206 (296)
T TIGR00433 129 LKDAGLDYYNHNLD-TSQEFYSNIISTHTYDDRVDTLENAKKAGL-KVCSGGIFGLGETVEDRIGLALALANLPPESVPI 206 (296)
T ss_pred HHHcCCCEEEEccc-CCHHHHhhccCCCCHHHHHHHHHHHHHcCC-EEEEeEEEeCCCCHHHHHHHHHHHHhCCCCEEEe
Confidence 68999999999999 799999999877799999999999999999 787776552356778999999999999986 677
Q ss_pred EeeeeCCCCCCCCCCCCCHHHHHHHHH
Q psy5052 80 IEYMPFSGNQWNNTKIMPFSEMLTKIK 106 (172)
Q Consensus 80 i~~~p~g~~~~~~~~~~~~~e~~~~l~ 106 (172)
..++|.++........++.++..+.+.
T Consensus 207 ~~l~p~~gT~l~~~~~~s~~~~~~~ia 233 (296)
T TIGR00433 207 NFLVKIKGTPLADNKELSADDALKTIA 233 (296)
T ss_pred eeeEEcCCCccCCCCCCCHHHHHHHHH
Confidence 778898876543334567777665544
No 40
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=99.08 E-value=1.3e-09 Score=82.51 Aligned_cols=88 Identities=16% Similarity=0.318 Sum_probs=75.7
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcC-CCcEEEEEEE-ecCCCHHHHHHHHHHHhcCCCe-E
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLG-YDNLKVNVVV-MKNFNDDEILDFVLLTRDRPID-V 77 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g-~~~v~in~v~-~~g~N~~ei~~l~~~a~~~g~~-~ 77 (172)
|+++|++.++||+++.+++.|+.+++..++++++++|+.++++| + .+.+.+++ +.+.|.+++.++++++++.|++ +
T Consensus 106 l~~~~~~~i~isl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~-~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i 184 (216)
T smart00729 106 LKEAGVNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLREAGPI-KVSTDLIVGLPGETEEDFEETLKLLKELGPDRV 184 (216)
T ss_pred HHHcCCCeEEEecccCCHHHHHHhcCCCCHHHHHHHHHHHHHhCCc-ceEEeEEecCCCCCHHHHHHHHHHHHHcCCCeE
Confidence 57899999999999999999999887779999999999999999 6 56665544 2446888999999999999996 8
Q ss_pred EEEeeeeCCCCC
Q psy5052 78 RFIEYMPFSGNQ 89 (172)
Q Consensus 78 ~~i~~~p~g~~~ 89 (172)
.+..++|.++.+
T Consensus 185 ~~~~~~p~~~t~ 196 (216)
T smart00729 185 SIFPLSPRPGTP 196 (216)
T ss_pred EeeeeeeCCCCh
Confidence 888999998754
No 41
>PRK06256 biotin synthase; Validated
Probab=99.04 E-value=2.2e-09 Score=88.62 Aligned_cols=103 Identities=15% Similarity=0.210 Sum_probs=85.5
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCe-EEE
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPID-VRF 79 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~-~~~ 79 (172)
|+++|++++.++++| +++.|+++++..++++.+++|+.++++|+ ++...+++=-|.+.+++.++++++++++++ +.+
T Consensus 158 LkeaG~~~v~~~lEt-s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi-~v~~~~I~GlgEt~ed~~~~~~~l~~l~~~~v~i 235 (336)
T PRK06256 158 LKEAGVDRYNHNLET-SRSYFPNVVTTHTYEDRIDTCEMVKAAGI-EPCSGGIIGMGESLEDRVEHAFFLKELDADSIPI 235 (336)
T ss_pred HHHhCCCEEecCCcc-CHHHHhhcCCCCCHHHHHHHHHHHHHcCC-eeccCeEEeCCCCHHHHHHHHHHHHhCCCCEEee
Confidence 689999999999999 99999999877799999999999999999 787776662367889999999999999986 666
Q ss_pred EeeeeCCCCCCCCCCCCCHHHHHHHH
Q psy5052 80 IEYMPFSGNQWNNTKIMPFSEMLTKI 105 (172)
Q Consensus 80 i~~~p~g~~~~~~~~~~~~~e~~~~l 105 (172)
..++|..+.+......++..|+++.+
T Consensus 236 ~~l~P~pGT~l~~~~~~~~~e~l~~i 261 (336)
T PRK06256 236 NFLNPIPGTPLENHPELTPLECLKTI 261 (336)
T ss_pred cccccCCCCCCCCCCCCCHHHHHHHH
Confidence 67888877654444567888876554
No 42
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.97 E-value=4.7e-09 Score=87.09 Aligned_cols=99 Identities=11% Similarity=0.139 Sum_probs=78.7
Q ss_pred eEEEeeeCCCHhhhccccCC---CCHHHHHHHHHHH-HHcCCCcEEEEEEEecCCCHH--HHHHHHHHHhcCCCeEEEEe
Q psy5052 8 SINISLDTLKPDKYEFITRR---KGWSRVLAGIDLA-VQLGYDNLKVNVVVMKNFNDD--EILDFVLLTRDRPIDVRFIE 81 (172)
Q Consensus 8 ~v~iSlds~~~e~~~~i~g~---~~~~~vl~~i~~~-~~~g~~~v~in~v~~~g~N~~--ei~~l~~~a~~~g~~~~~i~ 81 (172)
.+.+||++++++.|+++++. ..++.++++++.. .+.|. +|.+++++++|+||+ ++.++++|++.+.+.++++.
T Consensus 209 ~laisLka~d~e~r~~l~pv~~~~~L~~l~~~~~~~~~~~~~-rv~iey~LI~gvNDs~eda~~La~llk~l~~~VnLiP 287 (342)
T PRK14454 209 TLAISLHAPNDELRKKMMPIANKYSIEELIEACKYYINKTNR-RITFEYALVKGVNDSKEDAKELGKLLKGMLCHVNLIP 287 (342)
T ss_pred eEEEecCCCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHhCC-EEEEEEEeECCCCCCHHHHHHHHHHHhcCCceEEEEe
Confidence 47899999999999999874 2688888888764 47786 899999999999985 69999999999888999999
Q ss_pred eeeCCCCCCCCCCCCCHHHHHHHHHH
Q psy5052 82 YMPFSGNQWNNTKIMPFSEMLTKIKE 107 (172)
Q Consensus 82 ~~p~g~~~~~~~~~~~~~e~~~~l~~ 107 (172)
|.|++..++..+..-..+++.+.+++
T Consensus 288 yn~~~~~~~~~ps~e~l~~f~~~l~~ 313 (342)
T PRK14454 288 VNEVKENGFKKSSKEKIKKFKNILKK 313 (342)
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 99998766554333334455555654
No 43
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=98.97 E-value=4.3e-09 Score=88.08 Aligned_cols=104 Identities=18% Similarity=0.219 Sum_probs=81.5
Q ss_pred ChhcCCCeEEEeeeCCCHhhhcccc--C-CCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHH--HHHHHHHhcCC-
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFIT--R-RKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEI--LDFVLLTRDRP- 74 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~--g-~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei--~~l~~~a~~~g- 74 (172)
|+++|++++++++++.+++.|.+++ + ..+|++.+++++.++++|+ . .|++.++-|.+..+. .+++..++.++
T Consensus 168 Lk~aGv~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~-~-~v~~g~i~Gl~e~~~d~~~~a~~l~~L~~ 245 (366)
T TIGR02351 168 LVEAGLDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGM-R-KIGIGALLGLDDWRTDAFFTAYHLRYLQK 245 (366)
T ss_pred HHHcCCCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCC-C-eeceeEEEeCchhHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999997 2 3489999999999999998 3 466678888887543 33333333333
Q ss_pred ------CeEEEEeeeeCCCCCCCCCCCCCHHHHHHHHHH
Q psy5052 75 ------IDVRFIEYMPFSGNQWNNTKIMPFSEMLTKIKE 107 (172)
Q Consensus 75 ------~~~~~i~~~p~g~~~~~~~~~~~~~e~~~~l~~ 107 (172)
+.+.+..+||..+ .+.....++..++++.|..
T Consensus 246 ~~~~~~~sv~~~~l~P~~g-~~~~~~~l~~~~~~~~i~~ 283 (366)
T TIGR02351 246 KYWKTEISISVPRLRPCTN-GLKPKVIVTDRELVQIICA 283 (366)
T ss_pred HcCCCCccccccccccCCC-CCCCCCcCCHHHHHHHHHH
Confidence 4678889999976 7776778999998877654
No 44
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.96 E-value=6.1e-09 Score=86.51 Aligned_cols=99 Identities=14% Similarity=0.213 Sum_probs=77.5
Q ss_pred eEEEeeeCCCHhhhccccCC---CCHHHHHHHHHHHH-HcCCCcEEEEEEEecCCCHH--HHHHHHHHHhcCC--CeEEE
Q psy5052 8 SINISLDTLKPDKYEFITRR---KGWSRVLAGIDLAV-QLGYDNLKVNVVVMKNFNDD--EILDFVLLTRDRP--IDVRF 79 (172)
Q Consensus 8 ~v~iSlds~~~e~~~~i~g~---~~~~~vl~~i~~~~-~~g~~~v~in~v~~~g~N~~--ei~~l~~~a~~~g--~~~~~ 79 (172)
.+.||||+++++.|+++++. ..++.++++++.+. +.|- +|.+++++++|+||+ ++.++++|++.++ +.+++
T Consensus 210 ~LalSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~~~~~~g~-~V~ieyvLIpGvNDs~e~a~~La~~l~~l~~~~~VnL 288 (348)
T PRK14467 210 NLAVSLNASSQKLRERIMPISKTNTLEELMEVLKQYPLPPGR-RIMLEYVLIKGVNDSPEDALRLAQLIGKNKKKFKVNL 288 (348)
T ss_pred eEEEECCCCCHHHHHHhcCCccccCHHHHHHHHHHHHHhcCC-eEEEEEEEECCccCCHHHHHHHHHHHhcCCCceEEEE
Confidence 35699999999999999874 37899999988776 6786 899999999999975 6999999999875 56888
Q ss_pred EeeeeCCCCCCCCCCCCCHHHHHHHHHH
Q psy5052 80 IEYMPFSGNQWNNTKIMPFSEMLTKIKE 107 (172)
Q Consensus 80 i~~~p~g~~~~~~~~~~~~~e~~~~l~~ 107 (172)
+.|.|++...+..+..-..+++.+.+++
T Consensus 289 IPynp~~~~~~~~ps~e~i~~f~~~L~~ 316 (348)
T PRK14467 289 IPFNPDPELPYERPELERVYKFQKILWD 316 (348)
T ss_pred ecCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 8888887766654333334445555554
No 45
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.94 E-value=8.1e-09 Score=85.49 Aligned_cols=98 Identities=14% Similarity=0.160 Sum_probs=78.7
Q ss_pred eEEEeeeCCCHhhhcccc---CCCCHHHHHHHHHHHH-HcCCCcEEEEEEEecCCCHH--HHHHHHHHHhcCCCeEEEEe
Q psy5052 8 SINISLDTLKPDKYEFIT---RRKGWSRVLAGIDLAV-QLGYDNLKVNVVVMKNFNDD--EILDFVLLTRDRPIDVRFIE 81 (172)
Q Consensus 8 ~v~iSlds~~~e~~~~i~---g~~~~~~vl~~i~~~~-~~g~~~v~in~v~~~g~N~~--ei~~l~~~a~~~g~~~~~i~ 81 (172)
.+.||||+.+++.++++. ...+++.++++++.+. +.|- +|.+++++++|+||+ ++.++.++++.+++.+++|+
T Consensus 213 ~LaiSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r-~v~ieyvLI~GvNDs~eda~~L~~ll~~l~~kVnLIP 291 (342)
T PRK14465 213 NFAISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKR-RITFEYVMIPGVNMGRENANKLVKIARSLDCKINVIP 291 (342)
T ss_pred eEEEEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCC-EEEEEEEEECCccCCHHHHHHHHHHHhhCCCcEEEEc
Confidence 688999999999999994 3457999999999776 6676 899999999999985 79999999999999999999
Q ss_pred eeeCCCCCCCCCCCCCHHHHHHHHHH
Q psy5052 82 YMPFSGNQWNNTKIMPFSEMLTKIKE 107 (172)
Q Consensus 82 ~~p~g~~~~~~~~~~~~~e~~~~l~~ 107 (172)
|.|.+ ..+.++..-..++|.+.|++
T Consensus 292 yN~~~-~~~~~ps~e~i~~F~~~L~~ 316 (342)
T PRK14465 292 LNTEF-FGWRRPTDDEVAEFIMLLEP 316 (342)
T ss_pred cCCCC-CCCCCCCHHHHHHHHHHHHH
Confidence 99864 23443333344456666655
No 46
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.91 E-value=1e-08 Score=85.85 Aligned_cols=100 Identities=18% Similarity=0.299 Sum_probs=76.9
Q ss_pred eEEEeeeCCCHhhhccccCC---CCHHHHHHHHHHHH-HcC--CCcEEEEEEEecCCCHH--HHHHHHHHHhcCCCeEEE
Q psy5052 8 SINISLDTLKPDKYEFITRR---KGWSRVLAGIDLAV-QLG--YDNLKVNVVVMKNFNDD--EILDFVLLTRDRPIDVRF 79 (172)
Q Consensus 8 ~v~iSlds~~~e~~~~i~g~---~~~~~vl~~i~~~~-~~g--~~~v~in~v~~~g~N~~--ei~~l~~~a~~~g~~~~~ 79 (172)
.+.+||++++++.|+++.+. ..++.++++++... +.| ..+|.|++++++|+||+ ++.++++|++++++.|++
T Consensus 217 ~LaiSLha~d~e~R~~lmPin~~~~l~~ll~a~~~y~~~~~~~~rrI~irypLIpGvNDs~e~a~~La~ll~~l~~~VnL 296 (372)
T PRK11194 217 ALAISLHAPNDELRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTVEYVMLDHVNDGTEHAHQLAELLKDTPCKINL 296 (372)
T ss_pred EEEeeccCCCHHHHHHhcCCcccccHHHHHHHHHHHHHhcccCCCeEEEEEEeECCCCCCHHHHHHHHHHHhcCCceEEE
Confidence 56789999999999999874 25788888887776 453 13899999999999996 699999999999889999
Q ss_pred EeeeeCCCCCCCCCCCCCHHHHHHHHHH
Q psy5052 80 IEYMPFSGNQWNNTKIMPFSEMLTKIKE 107 (172)
Q Consensus 80 i~~~p~g~~~~~~~~~~~~~e~~~~l~~ 107 (172)
+.|.|++...+..+..-..++|.+.+++
T Consensus 297 IPYN~~~~~~~~~ps~e~v~~f~~~L~~ 324 (372)
T PRK11194 297 IPWNPFPGAPYGRSSNSRIDRFSKVLME 324 (372)
T ss_pred ecCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 9999988765543322223345555544
No 47
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=98.87 E-value=1.9e-08 Score=78.26 Aligned_cols=82 Identities=13% Similarity=0.252 Sum_probs=70.5
Q ss_pred CCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCH--HHHHHHHHHHhcCCCe-EEEEee
Q psy5052 6 LDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFND--DEILDFVLLTRDRPID-VRFIEY 82 (172)
Q Consensus 6 l~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~--~ei~~l~~~a~~~g~~-~~~i~~ 82 (172)
+|.+.+.+.++|++.|.+++|. +.+.++++|+.+.+.|. ++.|.+++++|+|+ ++++++++|++++++. +.+..|
T Consensus 90 ~D~~l~DiK~~d~~~~~~~tG~-~~~~il~nl~~l~~~g~-~v~iR~~vIPg~nd~~e~i~~ia~~l~~l~~~~~~llpy 167 (213)
T PRK10076 90 CDEVLFDLKIMDATQARDVVKM-NLPRVLENLRLLVSEGV-NVIPRLPLIPGFTLSRENMQQALDVLIPLGIKQIHLLPF 167 (213)
T ss_pred cCEEEEeeccCCHHHHHHHHCC-CHHHHHHHHHHHHhCCC-cEEEEEEEECCCCCCHHHHHHHHHHHHHcCCceEEEecC
Confidence 6789999999999999999984 68999999999999998 89999999999986 4699999999998764 555666
Q ss_pred eeCCCCC
Q psy5052 83 MPFSGNQ 89 (172)
Q Consensus 83 ~p~g~~~ 89 (172)
.|.|..+
T Consensus 168 h~~g~~K 174 (213)
T PRK10076 168 HQYGEPK 174 (213)
T ss_pred CccchhH
Confidence 6666533
No 48
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=98.85 E-value=2e-08 Score=82.63 Aligned_cols=99 Identities=18% Similarity=0.329 Sum_probs=83.9
Q ss_pred eEEEeeeCCCHhhhccccC---CCCHHHHHHHHHHHHH-cCCCcEEEEEEEecCCCHH--HHHHHHHHHhcCCCeEEEEe
Q psy5052 8 SINISLDTLKPDKYEFITR---RKGWSRVLAGIDLAVQ-LGYDNLKVNVVVMKNFNDD--EILDFVLLTRDRPIDVRFIE 81 (172)
Q Consensus 8 ~v~iSlds~~~e~~~~i~g---~~~~~~vl~~i~~~~~-~g~~~v~in~v~~~g~N~~--ei~~l~~~a~~~g~~~~~i~ 81 (172)
.+.||||+.+.+..+.+-. ..+++.+++++++..+ .|. +|++++++++|+||+ +...|+++++...+.|++|+
T Consensus 213 ~LAiSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~~-rVt~EY~Ll~~VND~~e~A~~L~~ll~~~~~~VNLIP 291 (349)
T COG0820 213 ALAISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSGR-RVTFEYVLLDGVNDSLEHAKELAKLLKGIPCKVNLIP 291 (349)
T ss_pred EEEEecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccCc-eEEEEeeecccccCCHHHHHHHHHHhcCCCceEEEee
Confidence 5789999999999999853 3489999999999985 565 899999999999996 68889999999999999999
Q ss_pred eeeCCCCCCCCCCCCCHHHHHHHHHH
Q psy5052 82 YMPFSGNQWNNTKIMPFSEMLTKIKE 107 (172)
Q Consensus 82 ~~p~g~~~~~~~~~~~~~e~~~~l~~ 107 (172)
|.|+.+..+..+......+|.+.|.+
T Consensus 292 ~Np~~~~~y~r~~~~~i~~F~~~L~~ 317 (349)
T COG0820 292 YNPVPGSDYERSSKERIRKFLKILKK 317 (349)
T ss_pred cCCCCCCCccCCcHHHHHHHHHHHHh
Confidence 99998876665555556778888875
No 49
>PRK15108 biotin synthase; Provisional
Probab=98.85 E-value=5.3e-08 Score=80.96 Aligned_cols=104 Identities=18% Similarity=0.226 Sum_probs=78.7
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCe---E
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPID---V 77 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~---~ 77 (172)
|++||+++++++||+ +|+.|.+++.+++|++.++.++.++++|+ .+...+.+=-|.+..|+.+++..+++++.. +
T Consensus 142 LkeAGld~~n~~leT-~p~~f~~I~~~~~~~~rl~~i~~a~~~G~-~v~sg~i~GlgEt~ed~v~~~~~l~~l~~~~~~i 219 (345)
T PRK15108 142 LANAGLDYYNHNLDT-SPEFYGNIITTRTYQERLDTLEKVRDAGI-KVCSGGIVGLGETVKDRAGLLLQLANLPTPPESV 219 (345)
T ss_pred HHHcCCCEEeecccc-ChHhcCCCCCCCCHHHHHHHHHHHHHcCC-ceeeEEEEeCCCCHHHHHHHHHHHHhccCCCCEE
Confidence 689999999999999 89999999877799999999999999998 676555444467788888888888888442 2
Q ss_pred EEEeeeeCCCCCCCCCCCCCHHHHHHHHH
Q psy5052 78 RFIEYMPFSGNQWNNTKIMPFSEMLTKIK 106 (172)
Q Consensus 78 ~~i~~~p~g~~~~~~~~~~~~~e~~~~l~ 106 (172)
-+..+.|..+.+......++..+.++.+.
T Consensus 220 p~~~~~P~~gTpl~~~~~~~~~e~lr~iA 248 (345)
T PRK15108 220 PINMLVKVKGTPLADNDDVDAFDFIRTIA 248 (345)
T ss_pred EeCCccCCCCCCCCCCCCCCHHHHHHHHH
Confidence 22234566555443333567887766644
No 50
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=98.82 E-value=2.3e-08 Score=76.02 Aligned_cols=71 Identities=17% Similarity=0.395 Sum_probs=60.9
Q ss_pred hhcC-CCeEEEeeeCCCHhhhccccCC-CCHH-HHHHHHHHHHHcCCCcEEEEEEEecCCCHH-HHHHHHHHHhcCC
Q psy5052 2 KKAG-LDSINISLDTLKPDKYEFITRR-KGWS-RVLAGIDLAVQLGYDNLKVNVVVMKNFNDD-EILDFVLLTRDRP 74 (172)
Q Consensus 2 ~~aG-l~~v~iSlds~~~e~~~~i~g~-~~~~-~vl~~i~~~~~~g~~~v~in~v~~~g~N~~-ei~~l~~~a~~~g 74 (172)
+++| ++.|+||+++. ++.|++++|. +.++ +++++|+.+++.|+ ++.|+++++++.|.. |+.++++++++++
T Consensus 109 ~~~g~~~~v~isl~~~-~~~~~~~~g~~~~~~~~~~~~i~~l~~~gi-~~~i~~~v~~~~~~~~ei~~~~~~l~~~~ 183 (191)
T TIGR02495 109 LEEGLVDYVAMDVKAP-PEKYPELYGLEKNGSNNILKSLEILLRSGI-PFELRTTVHRGFLDEEDLAEIATRIKENG 183 (191)
T ss_pred HhcCCCcEEEEeccCC-hHHHHHHHCCCCchHHHHHHHHHHHHHcCC-CEEEEEEEeCCCCCHHHHHHHHHHhccCC
Confidence 4678 68999999995 6788888764 4676 99999999999999 899999999987764 7999999999888
No 51
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.81 E-value=1.3e-08 Score=84.28 Aligned_cols=99 Identities=15% Similarity=0.216 Sum_probs=80.8
Q ss_pred EEEeeeCCCHhhhccccCC---CCHHHHHHHHHHHH-HcCCCcEEEEEEEecCCCHH--HHHHHHHHHhcCCCeEEEEee
Q psy5052 9 INISLDTLKPDKYEFITRR---KGWSRVLAGIDLAV-QLGYDNLKVNVVVMKNFNDD--EILDFVLLTRDRPIDVRFIEY 82 (172)
Q Consensus 9 v~iSlds~~~e~~~~i~g~---~~~~~vl~~i~~~~-~~g~~~v~in~v~~~g~N~~--ei~~l~~~a~~~g~~~~~i~~ 82 (172)
+.+|||+.+++.++++... -++++++++++.+. +.|. +|.+++++++|+||+ ++.+|.++.+.+.+.+++|.|
T Consensus 201 LaiSLhA~~~e~R~~imP~~~~~~l~el~~a~~~~~~~~gr-ri~~EyvLl~GVNDs~e~a~~L~~~l~~~~~~vNLIPy 279 (344)
T PRK14464 201 LALSLHTTRAELRARLLPRAPRIAPEELVELGEAYARATGY-PIQYQWTLLEGVNDSDEEMDGIVRLLKGKYAVMNLIPY 279 (344)
T ss_pred HHHHhcCCChhHhheeCCccCCCCHHHHHHHHHHHHHHHCC-EEEEEEEEeCCCCCCHHHHHHHHHHHhccccccceecC
Confidence 4479999999999998653 37999999999886 5675 899999999999996 688999999999999999999
Q ss_pred eeCCCCCCCCCCCCCHHHHHHHHHHh
Q psy5052 83 MPFSGNQWNNTKIMPFSEMLTKIKEA 108 (172)
Q Consensus 83 ~p~g~~~~~~~~~~~~~e~~~~l~~~ 108 (172)
.|++...+..+..-...+|.+.|++.
T Consensus 280 N~v~g~~~~rp~~~~i~~f~~~L~~~ 305 (344)
T PRK14464 280 NSVDGDAYRRPSGERIVAMARYLHRR 305 (344)
T ss_pred CccCCCCccCCCHHHHHHHHHHHHHC
Confidence 99987666544444455677777664
No 52
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=98.81 E-value=6.9e-08 Score=80.62 Aligned_cols=89 Identities=16% Similarity=0.339 Sum_probs=76.3
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEE-ecCCCHHHHHHHHHHHhcCCC-eEE
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVV-MKNFNDDEILDFVLLTRDRPI-DVR 78 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~-~~g~N~~ei~~l~~~a~~~g~-~~~ 78 (172)
|+++|+++|.|+++|+++++++.+.+..++++++++++.++++|+..|.+.+.. ++|+|.+++.+.++++.++++ .+.
T Consensus 106 l~~~Gv~risiGvqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~~~~~~~l~~~~~l~~~~is 185 (360)
T TIGR00539 106 LKGAGINRLSLGVQSFRDDKLLFLGRQHSAKNIAPAIETALKSGIENISLDLMYGLPLQTLNSLKEELKLAKELPINHLS 185 (360)
T ss_pred HHHcCCCEEEEecccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCCCHHHHHHHHHHHHccCCCEEE
Confidence 578999999999999999999999666799999999999999998436655433 588999999999999999998 477
Q ss_pred EEeeeeCCCCC
Q psy5052 79 FIEYMPFSGNQ 89 (172)
Q Consensus 79 ~i~~~p~g~~~ 89 (172)
+..+.|.++..
T Consensus 186 ~y~l~~~~gT~ 196 (360)
T TIGR00539 186 AYALSVEPNTN 196 (360)
T ss_pred eecceEcCCCh
Confidence 87888887743
No 53
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=98.81 E-value=2.5e-08 Score=72.50 Aligned_cols=69 Identities=30% Similarity=0.473 Sum_probs=62.0
Q ss_pred ChhcCCCeEEEeeeCCCHh-hhccccCCCCHHHHHHHHHHHHHcCCCc-EEEEEEEecCCCHHHHHHHHHHH
Q psy5052 1 YKKAGLDSINISLDTLKPD-KYEFITRRKGWSRVLAGIDLAVQLGYDN-LKVNVVVMKNFNDDEILDFVLLT 70 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e-~~~~i~g~~~~~~vl~~i~~~~~~g~~~-v~in~v~~~g~N~~ei~~l~~~a 70 (172)
|+++|++.+.+|+++.+++ .++.+++..++++++++++.+.++|+ + +...+++.+|.|++|++++++|.
T Consensus 96 l~~~~~~~i~~~l~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~-~~~~~~i~~~~~~~~~e~~~~~~~i 166 (166)
T PF04055_consen 96 LKKLGVDRIRISLESLDEESVLRIINRGKSFERVLEALERLKEAGI-PRVIIFIVGLPGENDEEIEETIRFI 166 (166)
T ss_dssp HHHTTCSEEEEEEBSSSHHHHHHHHSSTSHHHHHHHHHHHHHHTTS-ETEEEEEEEBTTTSHHHHHHHHHHH
T ss_pred HHhcCccEEecccccCCHHHhhhhhcCCCCHHHHHHHHHHHHHcCC-CcEEEEEEEeCCCCHHHHHHHhCcC
Confidence 4678999999999999999 77777665789999999999999998 6 88889999999999999999884
No 54
>PLN02389 biotin synthase
Probab=98.76 E-value=1.6e-07 Score=79.00 Aligned_cols=104 Identities=17% Similarity=0.259 Sum_probs=79.2
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCC--C-eE
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRP--I-DV 77 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g--~-~~ 77 (172)
|++||+++++++||+ +++.|+++..+.+|++.++.++.++++|+ ++...+.+=-|.+.+|+.+++.++++++ . .+
T Consensus 184 LkeAGld~~~~~LeT-s~~~y~~i~~~~s~e~rl~ti~~a~~~Gi-~v~sg~IiGlgEt~edrv~~l~~Lr~L~~~~~~v 261 (379)
T PLN02389 184 LKEAGLTAYNHNLDT-SREYYPNVITTRSYDDRLETLEAVREAGI-SVCSGGIIGLGEAEEDRVGLLHTLATLPEHPESV 261 (379)
T ss_pred HHHcCCCEEEeeecC-ChHHhCCcCCCCCHHHHHHHHHHHHHcCC-eEeEEEEECCCCCHHHHHHHHHHHHhcccCCcEE
Confidence 689999999999999 57899999877799999999999999998 6655544323455667888888888884 3 34
Q ss_pred EEEeeeeCCCCCCCCCCCCCHHHHHHHHH
Q psy5052 78 RFIEYMPFSGNQWNNTKIMPFSEMLTKIK 106 (172)
Q Consensus 78 ~~i~~~p~g~~~~~~~~~~~~~e~~~~l~ 106 (172)
.+..++|..+.+......++..+.++.+.
T Consensus 262 ~l~~l~P~~GTpL~~~~~~s~~e~lr~iA 290 (379)
T PLN02389 262 PINALVAVKGTPLEDQKPVEIWEMVRMIA 290 (379)
T ss_pred ecccceecCCCcCCCCCCCCHHHHHHHHH
Confidence 55567888776554344678888666643
No 55
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=98.76 E-value=2.2e-08 Score=84.23 Aligned_cols=156 Identities=12% Similarity=0.171 Sum_probs=102.7
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEEEE
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRFI 80 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~~i 80 (172)
|++||+..|..|.|+++|+.|.++ +-.+-.+|++++++|+..+.+--++.+|.|++++.++++||...-=.++-.
T Consensus 161 l~~ag~~tvYlsFDG~~e~~~~~~-----~~eIk~alen~r~~g~~svVLVptl~rgvNd~~lG~iirfa~~n~dvVrgV 235 (475)
T COG1964 161 LREAGVNTVYLSFDGVTPKTNWKN-----HWEIKQALENCRKAGLPSVVLVPTLIRGVNDHELGAIIRFALNNIDVVRGV 235 (475)
T ss_pred HHhcCCcEEEEecCCCCCCchhhH-----hhhhHHHHHHHHhcCCCcEEEEeehhcccChHHHHHHHHHHHhcccccccc
Confidence 679999999999999999997765 444555999999999855888888999999999999999998532123444
Q ss_pred eeeeC---CCCC--CCCCCCCCHHHHHHHHHHhCCCceeccC-CCCC---ceeEEE--eCCCCceEEEEcCCCCCcccCC
Q psy5052 81 EYMPF---SGNQ--WNNTKIMPFSEMLTKIKEAHPDLLTLEN-APND---TSKAYK--VPEFKGQVGFITSMTEHFCGTC 149 (172)
Q Consensus 81 ~~~p~---g~~~--~~~~~~~~~~e~~~~l~~~~~~~~~~~~-~~~~---~~~~~~--~~~~~~~~g~i~~~~~~~C~~c 149 (172)
.+.|+ |+.. ......++..++++.++++.++..+... ++-+ +...+- +.+. ... .-..+..|+.-
T Consensus 236 nfQPVsltGr~~~~~r~~~RITIPd~iK~ieeQT~g~i~~~d~yPvp~~~~isr~v~al~~~-~~~---~~s~h~~cg~a 311 (475)
T COG1964 236 NFQPVSLTGRMPQKERERFRITIPDAIKKIEEQTDGEISKDDWYPVPIAVPISRFVEALTGD-PKY---ELTSHPACGAA 311 (475)
T ss_pred ceEEEEEecccchhhhhheEeechhHHHhHHHhcCCeeeccccccCcchhhHHHHHHHHcCC-Cce---eeeccCCCCce
Confidence 44554 4432 1224568899999999998764433211 1110 000010 1111 111 11245679887
Q ss_pred CceeeccCCcEEecCC
Q psy5052 150 NRLRLMADGSLKVCLF 165 (172)
Q Consensus 150 ~~~~i~~~G~v~pC~~ 165 (172)
+-+....+|++.|=..
T Consensus 312 tYvf~~~~~r~iPit~ 327 (475)
T COG1964 312 TYVFYDEEKKVIPITR 327 (475)
T ss_pred EEEEecCCCcEEeeee
Confidence 7777777788888543
No 56
>PRK05660 HemN family oxidoreductase; Provisional
Probab=98.71 E-value=2.7e-07 Score=77.63 Aligned_cols=88 Identities=17% Similarity=0.249 Sum_probs=73.5
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEE-EEecCCCHHHHHHHHHHHhcCCCe-EE
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNV-VVMKNFNDDEILDFVLLTRDRPID-VR 78 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~-v~~~g~N~~ei~~l~~~a~~~g~~-~~ 78 (172)
|+++|+++|.|+++|+++++++.+++..++++++++++.++++|+..|.+.+ .-++|+|.+++.+.++++.+++++ +.
T Consensus 113 Lk~~Gv~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpgqt~~~~~~~l~~~~~l~p~~is 192 (378)
T PRK05660 113 YQRAGVNRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQSLEEALDDLRQAIALNPPHLS 192 (378)
T ss_pred HHHcCCCEEEeccCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHhcCCCeEE
Confidence 5899999999999999999999998888999999999999999984333332 224778999999999999999984 67
Q ss_pred EEeeeeCCCC
Q psy5052 79 FIEYMPFSGN 88 (172)
Q Consensus 79 ~i~~~p~g~~ 88 (172)
+..+.+..+.
T Consensus 193 ~y~l~~~~gT 202 (378)
T PRK05660 193 WYQLTIEPNT 202 (378)
T ss_pred eeccEeccCC
Confidence 7777766553
No 57
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=98.71 E-value=1.3e-07 Score=77.97 Aligned_cols=94 Identities=13% Similarity=0.165 Sum_probs=73.1
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHH--HHHHHHHHHhcCCCeE-
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDD--EILDFVLLTRDRPIDV- 77 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~--ei~~l~~~a~~~g~~~- 77 (172)
|+++|+ .+.||+|+..++. + +++++++|+.++++|+ .+.+++|+++|.|++ ++.++++++.++|+..
T Consensus 193 L~~~g~-~v~i~l~~~h~~e---l-----~~~~~~ai~~L~~~Gi-~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~py 262 (321)
T TIGR03822 193 LKTSGK-TVYVALHANHARE---L-----TAEARAACARLIDAGI-PMVSQSVLLRGVNDDPETLAALMRAFVECRIKPY 262 (321)
T ss_pred HHHcCC-cEEEEecCCChhh---c-----CHHHHHHHHHHHHcCC-EEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCeeE
Confidence 467885 5889999976532 2 5899999999999999 899999999998876 6999999999999964
Q ss_pred EEEeeeeCCCCCCCCCCCCCHHHHHHHHHH
Q psy5052 78 RFIEYMPFSGNQWNNTKIMPFSEMLTKIKE 107 (172)
Q Consensus 78 ~~i~~~p~g~~~~~~~~~~~~~e~~~~l~~ 107 (172)
.+..+.|+++.... .++.++..+.+++
T Consensus 263 yl~~~~p~~g~~~f---~~~~~~~~~i~~~ 289 (321)
T TIGR03822 263 YLHHLDLAPGTAHF---RVTIEEGQALVRA 289 (321)
T ss_pred EEEecCCCCCcccc---cCcHHHHHHHHHH
Confidence 66677898764322 3566655555444
No 58
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=98.68 E-value=1.7e-07 Score=69.89 Aligned_cols=88 Identities=22% Similarity=0.309 Sum_probs=73.4
Q ss_pred ChhcCCCeEEEeeeCCCHhhhcccc-CCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCH-HHHHHHHHHHhcCC-Ce-
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFIT-RRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFND-DEILDFVLLTRDRP-ID- 76 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~-g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~-~ei~~l~~~a~~~g-~~- 76 (172)
|+++|+..+.+|+++.+++.+..+. +...+++++++|+.+++.|+ .+.+++++..+.++ +++.+.+++..+.+ +.
T Consensus 94 l~~~g~~~i~i~le~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~~~~ 172 (204)
T cd01335 94 LKELGLDGVGVSLDSGDEEVADKIRGSGESFKERLEALKELREAGL-GLSTTLLVGLGDEDEEDDLEELELLAEFRSPDR 172 (204)
T ss_pred HHhCCCceEEEEcccCCHHHHHHHhcCCcCHHHHHHHHHHHHHcCC-CceEEEEEecCCChhHHHHHHHHHHHhhcCcch
Confidence 4678999999999999999999987 56689999999999999998 89999988876554 56777777777766 54
Q ss_pred EEEEeeeeCCCCC
Q psy5052 77 VRFIEYMPFSGNQ 89 (172)
Q Consensus 77 ~~~i~~~p~g~~~ 89 (172)
+.+..++|.++.+
T Consensus 173 ~~~~~~~p~~~t~ 185 (204)
T cd01335 173 VSLFRLLPEEGTP 185 (204)
T ss_pred hhhhhhcccCCCe
Confidence 5777888998864
No 59
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=98.65 E-value=1e-07 Score=78.48 Aligned_cols=94 Identities=12% Similarity=0.078 Sum_probs=73.9
Q ss_pred ChhcCCCeEE-EeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCH--HHHHHHHHHHhcCCCeE
Q psy5052 1 YKKAGLDSIN-ISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFND--DEILDFVLLTRDRPIDV 77 (172)
Q Consensus 1 L~~aGl~~v~-iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~--~ei~~l~~~a~~~g~~~ 77 (172)
|+++|+..+. +|+|+.. |.|+ .+.++|++++++|+ ++.+++|+++|+|+ +++.++.+.+.++|+..
T Consensus 199 L~~~~~~~~~~~h~dh~~-Ei~d---------~~~~ai~~L~~~Gi-~v~~qtvllkgiNDn~~~l~~L~~~l~~~gv~p 267 (321)
T TIGR03821 199 LANSRLQTVLVVHINHAN-EIDA---------EVADALAKLRNAGI-TLLNQSVLLRGVNDNADTLAALSERLFDAGVLP 267 (321)
T ss_pred HHhcCCcEEEEeeCCChH-hCcH---------HHHHHHHHHHHcCC-EEEecceeeCCCCCCHHHHHHHHHHHHHcCCee
Confidence 4678887774 6999984 7664 47779999999999 89999999999877 57999999999999964
Q ss_pred -EEEeeeeCCCCCCCCCCCCCHHHHHHHHHHh
Q psy5052 78 -RFIEYMPFSGNQWNNTKIMPFSEMLTKIKEA 108 (172)
Q Consensus 78 -~~i~~~p~g~~~~~~~~~~~~~e~~~~l~~~ 108 (172)
.+..+.|+|++.. ..++.++..+.+++.
T Consensus 268 yyl~~~~p~gg~~~---f~v~~~~~~~i~~~l 296 (321)
T TIGR03821 268 YYLHLLDKVQGAAH---FDVDDERARALMAEL 296 (321)
T ss_pred CcccccCCCCCccc---ccCCHHHHHHHHHHH
Confidence 6777889997542 357777766665543
No 60
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=98.59 E-value=4.2e-07 Score=75.70 Aligned_cols=88 Identities=17% Similarity=0.356 Sum_probs=74.3
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEE-ecCCCHHHHHHHHHHHhcCCCe-EE
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVV-MKNFNDDEILDFVLLTRDRPID-VR 78 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~-~~g~N~~ei~~l~~~a~~~g~~-~~ 78 (172)
|+++|+++|.|+++|+++++.+.+.+..+++++.++++.++++|+..|.+.+.. ++|+|.+++.+.++++.+++++ +.
T Consensus 104 l~~~GvnRiSiGvQS~~~~~L~~lgR~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPgqt~~~~~~~l~~~~~l~~~~is 183 (350)
T PRK08446 104 MKNLGVNRISFGVQSFNEDKLKFLGRIHSQKQIIKAIENAKKAGFENISIDLIYDTPLDNKKLLKEELKLAKELPINHLS 183 (350)
T ss_pred HHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 578999999999999999999988766789999999999999998446665544 4889999999999999999985 67
Q ss_pred EEeeeeCCCC
Q psy5052 79 FIEYMPFSGN 88 (172)
Q Consensus 79 ~i~~~p~g~~ 88 (172)
+..+.|..+.
T Consensus 184 ~y~L~~~~gT 193 (350)
T PRK08446 184 AYSLTIEENT 193 (350)
T ss_pred eccceecCCC
Confidence 7677776554
No 61
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=98.58 E-value=4.7e-07 Score=76.00 Aligned_cols=87 Identities=15% Similarity=0.237 Sum_probs=73.8
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEE-EecCCCHHHHHHHHHHHhcCCCe-EE
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVV-VMKNFNDDEILDFVLLTRDRPID-VR 78 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v-~~~g~N~~ei~~l~~~a~~~g~~-~~ 78 (172)
|+++|+++|.|+++|+++++++.+.+..+++++.++++.++++|+..+.+.+. -++|.|.+++.+.++++.+++++ +.
T Consensus 106 l~~~G~~rvsiGvqS~~~~~l~~l~r~~~~~~~~~~i~~l~~~g~~~v~~dli~GlPgqt~~~~~~~l~~~~~l~~~~i~ 185 (377)
T PRK08599 106 LKDSGVNRISLGVQTFNDELLKKIGRTHNEEDVYEAIANAKKAGFDNISIDLIYALPGQTIEDFKESLAKALALDIPHYS 185 (377)
T ss_pred HHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEeeecCCCCCCHHHHHHHHHHHHccCCCEEe
Confidence 57899999999999999999999988789999999999999999843666543 35889999999999999999985 55
Q ss_pred EEeeeeCCC
Q psy5052 79 FIEYMPFSG 87 (172)
Q Consensus 79 ~i~~~p~g~ 87 (172)
+..+.|..+
T Consensus 186 ~y~l~~~pg 194 (377)
T PRK08599 186 AYSLILEPK 194 (377)
T ss_pred eeceeecCC
Confidence 656666554
No 62
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=98.58 E-value=1.2e-06 Score=74.40 Aligned_cols=88 Identities=14% Similarity=0.147 Sum_probs=73.8
Q ss_pred hhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHH-HHHHHHHHHhcCC----Ce
Q psy5052 2 KKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDD-EILDFVLLTRDRP----ID 76 (172)
Q Consensus 2 ~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~-ei~~l~~~a~~~g----~~ 76 (172)
.+.+|+.++||+|+.+|+...++-+...-.++++.++++.++|+ .+....|++||+|+. ++++.++...+++ -.
T Consensus 135 ~~~~lspl~iSVhat~p~lR~~ll~n~~a~~il~~l~~l~~~~I-~~h~qiVlcPGiNDg~~L~~Ti~dL~~~~~~~~P~ 213 (433)
T TIGR03279 135 EQLRLSPLYVSVHATEPSLRARLLKNPRAGLILEQLKWFQERRL-QLHAQVVVCPGINDGKHLERTLRDLAQFHDGDWPT 213 (433)
T ss_pred HHcCCCCEEEEEecCCHHHHHHHhCCCCHHHHHHHHHHHHHcCC-eEEEEEEEcCCcCCHHHHHHHHHHHHhhcccCCCc
Confidence 35689999999999999999999875567999999999999999 799999999999995 7888887777762 23
Q ss_pred EEEEeeeeCCCCCC
Q psy5052 77 VRFIEYMPFSGNQW 90 (172)
Q Consensus 77 ~~~i~~~p~g~~~~ 90 (172)
+.=+..+|+|-.++
T Consensus 214 v~S~avVPVGlTk~ 227 (433)
T TIGR03279 214 VLSVAVVPVGLTRF 227 (433)
T ss_pred eeEEEEEccccccC
Confidence 56667899996543
No 63
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=98.54 E-value=2.4e-06 Score=71.28 Aligned_cols=88 Identities=13% Similarity=0.224 Sum_probs=74.7
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEE-ecCCCHHHHHHHHHHHhcCCCe-EE
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVV-MKNFNDDEILDFVLLTRDRPID-VR 78 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~-~~g~N~~ei~~l~~~a~~~g~~-~~ 78 (172)
|+++|+.+|.|+++|.++++.+.+.+..+.+++.++++.++++|+..+.+.+.. ++|.+.+++.+.++++.+++.+ +.
T Consensus 109 lk~~G~nrisiGvQS~~d~vL~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPgqt~e~~~~tl~~~~~l~p~~is 188 (353)
T PRK05904 109 LKKNKVNRISLGVQSMNNNILKQLNRTHTIQDSKEAINLLHKNGIYNISCDFLYCLPILKLKDLDEVFNFILKHKINHIS 188 (353)
T ss_pred HHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeecCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 578999999999999999999999887899999999999999998436666433 4889999999999999999984 56
Q ss_pred EEeeeeCCCC
Q psy5052 79 FIEYMPFSGN 88 (172)
Q Consensus 79 ~i~~~p~g~~ 88 (172)
+..+.+..+.
T Consensus 189 ~y~L~~~~gT 198 (353)
T PRK05904 189 FYSLEIKEGS 198 (353)
T ss_pred EEeeEecCCC
Confidence 7677776653
No 64
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=98.51 E-value=1.7e-06 Score=74.49 Aligned_cols=82 Identities=7% Similarity=0.251 Sum_probs=70.2
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEE-EecCCCHHHHHHHHHHHhcCCCe-EE
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVV-VMKNFNDDEILDFVLLTRDRPID-VR 78 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v-~~~g~N~~ei~~l~~~a~~~g~~-~~ 78 (172)
|+++|+.+|.|+++|+++++++.+++..++++++++++.++++|+..+.+.+. -++|.|.+++.+.++++.+++++ +.
T Consensus 157 lk~~G~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~~~~is 236 (455)
T TIGR00538 157 LRDEGFNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAREAGFTSINIDLIYGLPKQTKESFAKTLEKVAELNPDRLA 236 (455)
T ss_pred HHHcCCCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEeeCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 57899999999999999999999988789999999999999999843555432 35889999999999999999985 56
Q ss_pred EEee
Q psy5052 79 FIEY 82 (172)
Q Consensus 79 ~i~~ 82 (172)
+..+
T Consensus 237 ~y~L 240 (455)
T TIGR00538 237 VFNY 240 (455)
T ss_pred EecC
Confidence 6555
No 65
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=98.50 E-value=1.2e-06 Score=73.63 Aligned_cols=87 Identities=15% Similarity=0.276 Sum_probs=74.8
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEE-ecCCCHHHHHHHHHHHhcCCCe-EE
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVV-MKNFNDDEILDFVLLTRDRPID-VR 78 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~-~~g~N~~ei~~l~~~a~~~g~~-~~ 78 (172)
|+++|+++|.|+++|++++..+.+.+..+.++++++++.++++|+..+.+.+.+ ++|++.+++.+.++++.+++.+ +.
T Consensus 114 l~~~G~~rvslGvQS~~~~~L~~l~R~~s~~~~~~a~~~l~~~g~~~v~~dli~GlPgqt~~~~~~tl~~~~~l~~~~i~ 193 (375)
T PRK05628 114 LRAAGFTRVSLGMQSAAPHVLAVLDRTHTPGRAVAAAREARAAGFEHVNLDLIYGTPGESDDDWRASLDAALEAGVDHVS 193 (375)
T ss_pred HHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeccCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 578999999999999999999999887899999999999999999438887765 5899999999999999999984 56
Q ss_pred EEeeeeCCC
Q psy5052 79 FIEYMPFSG 87 (172)
Q Consensus 79 ~i~~~p~g~ 87 (172)
+..+.+..+
T Consensus 194 ~y~l~~~~g 202 (375)
T PRK05628 194 AYALIVEDG 202 (375)
T ss_pred eeeeecCCC
Confidence 656665444
No 66
>PRK08508 biotin synthase; Provisional
Probab=98.49 E-value=1.5e-06 Score=70.31 Aligned_cols=100 Identities=17% Similarity=0.189 Sum_probs=75.1
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCC--CHHHHHHHHHHHhcCCCe-E
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNF--NDDEILDFVLLTRDRPID-V 77 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~--N~~ei~~l~~~a~~~g~~-~ 77 (172)
|++||++++++.+++. ++.|.++.....|+++++.++.++++|+ ++ .+.++-|. +.+|+.+++.++++++.+ +
T Consensus 108 Lk~aGld~~~~~lEt~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi-~v--~sg~I~GlGEt~ed~~~~l~~lr~L~~~sv 183 (279)
T PRK08508 108 LKKAGIFSYNHNLETS-KEFFPKICTTHTWEERFQTCENAKEAGL-GL--CSGGIFGLGESWEDRISFLKSLASLSPHST 183 (279)
T ss_pred HHHcCCCEEcccccch-HHHhcCCCCCCCHHHHHHHHHHHHHcCC-ee--cceeEEecCCCHHHHHHHHHHHHcCCCCEE
Confidence 6899999999999995 6889888766789999999999999997 44 44455454 557899999999999986 4
Q ss_pred EEEeeeeCCCCCCCCCCCCCHHHHHHHH
Q psy5052 78 RFIEYMPFSGNQWNNTKIMPFSEMLTKI 105 (172)
Q Consensus 78 ~~i~~~p~g~~~~~~~~~~~~~e~~~~l 105 (172)
-+..+.|..+.+... ...+..+.++.+
T Consensus 184 pl~~~~p~~~t~~~~-~~~~~~~~lr~i 210 (279)
T PRK08508 184 PINFFIPNPALPLKA-PTLSADEALEIV 210 (279)
T ss_pred eeCCcCCCCCCCCCC-CCCCHHHHHHHH
Confidence 444456665543322 346777766664
No 67
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=98.47 E-value=3.1e-06 Score=72.34 Aligned_cols=101 Identities=11% Similarity=0.154 Sum_probs=79.5
Q ss_pred ChhcC--CCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEe---cCCCHHHHHHHHHHHhcCCC
Q psy5052 1 YKKAG--LDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVM---KNFNDDEILDFVLLTRDRPI 75 (172)
Q Consensus 1 L~~aG--l~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~---~g~N~~ei~~l~~~a~~~g~ 75 (172)
|+++| +..+.++++|.+++..+.++++.+.++++++++.+++++. .+.+.+.++ +|.+.+++.+.++|+++.++
T Consensus 238 ~~~~~~~~~~l~iglES~s~~vLk~m~k~~~~~~~~~~i~~l~~~~~-~i~i~~~~I~G~PgET~e~~~~t~~fl~~~~~ 316 (430)
T TIGR01125 238 MAEGPKVLPYLDIPLQHASDRILKLMRRPGSGEQQLDFIERLREKCP-DAVLRTTFIVGFPGETEEDFQELLDFVEEGQF 316 (430)
T ss_pred HhhCCcccCceEeCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHhCC-CCeEeEEEEEECCCCCHHHHHHHHHHHHhcCC
Confidence 35664 7889999999999999999887789999999999999864 455555544 78899999999999999998
Q ss_pred e-EEEEeeeeCCCCC-CCCCCCCCHHHHH
Q psy5052 76 D-VRFIEYMPFSGNQ-WNNTKIMPFSEML 102 (172)
Q Consensus 76 ~-~~~i~~~p~g~~~-~~~~~~~~~~e~~ 102 (172)
+ +.+..|.|.++.. +..+..++.++..
T Consensus 317 ~~~~~~~~sp~pGT~~~~~~~~i~~~~~~ 345 (430)
T TIGR01125 317 DRLGAFTYSPEEGTDAFALPDQVPEEVKE 345 (430)
T ss_pred CEEeeeeccCCCCCccccCCCCCCHHHHH
Confidence 5 5777888988754 3334456665543
No 68
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=98.47 E-value=4.2e-06 Score=72.64 Aligned_cols=88 Identities=17% Similarity=0.267 Sum_probs=73.5
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEE-EecCCCHHHHHHHHHHHhcCCCe-EE
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVV-VMKNFNDDEILDFVLLTRDRPID-VR 78 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v-~~~g~N~~ei~~l~~~a~~~g~~-~~ 78 (172)
|+++|+++|.|+++|+++++.+.+.+..++++++++++.++++|+..|.+.+. -++|.+.+++.+.++++.+++.+ +.
T Consensus 275 Lk~~Gv~RISIGvQS~~d~vLk~igR~ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPgEt~ed~~~tl~~l~~L~pd~is 354 (488)
T PRK08207 275 LKKYGVDRISINPQTMNDETLKAIGRHHTVEDIIEKFHLAREMGFDNINMDLIIGLPGEGLEEVKHTLEEIEKLNPESLT 354 (488)
T ss_pred HHhcCCCeEEEcCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhcCcCEEE
Confidence 57899999999999999999999977679999999999999999843443332 24788999999999999999984 67
Q ss_pred EEeeeeCCCC
Q psy5052 79 FIEYMPFSGN 88 (172)
Q Consensus 79 ~i~~~p~g~~ 88 (172)
+..+.+..+.
T Consensus 355 v~~L~i~~gT 364 (488)
T PRK08207 355 VHTLAIKRAS 364 (488)
T ss_pred EEeceEcCCC
Confidence 7777776654
No 69
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=98.46 E-value=1.5e-06 Score=72.79 Aligned_cols=88 Identities=16% Similarity=0.323 Sum_probs=73.4
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEE-ecCCCHHHHHHHHHHHhcCCCe-EE
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVV-MKNFNDDEILDFVLLTRDRPID-VR 78 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~-~~g~N~~ei~~l~~~a~~~g~~-~~ 78 (172)
|+++|+++|.|+++|++++..+.+.+..++++++++++.++++|+..|.+.+.. ++|.|.+++.+.++++.+++++ +.
T Consensus 105 l~~~G~~rvsiGvqS~~d~~L~~l~R~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPgqt~e~~~~~l~~~~~l~~~~is 184 (374)
T PRK05799 105 LKSMGVNRLSIGLQAWQNSLLKYLGRIHTFEEFLENYKLARKLGFNNINVDLMFGLPNQTLEDWKETLEKVVELNPEHIS 184 (374)
T ss_pred HHHcCCCEEEEECccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 578999999999999999999988776789999999999999998435555432 4789999999999999999974 66
Q ss_pred EEeeeeCCCC
Q psy5052 79 FIEYMPFSGN 88 (172)
Q Consensus 79 ~i~~~p~g~~ 88 (172)
+..+.|..+.
T Consensus 185 ~y~l~~~pgT 194 (374)
T PRK05799 185 CYSLIIEEGT 194 (374)
T ss_pred EeccEecCCC
Confidence 6667776553
No 70
>PRK06267 hypothetical protein; Provisional
Probab=98.45 E-value=4.6e-06 Score=69.52 Aligned_cols=101 Identities=16% Similarity=0.256 Sum_probs=82.0
Q ss_pred CCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCe-EEEEeee
Q psy5052 5 GLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPID-VRFIEYM 83 (172)
Q Consensus 5 Gl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~-~~~i~~~ 83 (172)
++..+..++++.+++.|..++..+++++.+++++.++++|+ ++...+.+=-|.+.+|+.++++++++++++ +.|..++
T Consensus 127 ~l~Gv~g~~ET~~~~~~~~i~~~~s~ed~~~~l~~ak~aGi-~v~~g~IiGlgEt~ed~~~~l~~l~~l~~d~v~~~~L~ 205 (350)
T PRK06267 127 EIEGVVGAVETVNPKLHREICPGKPLDKIKEMLLKAKDLGL-KTGITIILGLGETEDDIEKLLNLIEELDLDRITFYSLN 205 (350)
T ss_pred cccCceeeeecCCHHHHHhhCCCCCHHHHHHHHHHHHHcCC-eeeeeEEEeCCCCHHHHHHHHHHHHHcCCCEEEEEeee
Confidence 34445678999999999999877899999999999999999 787777762367999999999999999986 5788899
Q ss_pred eCCCCCCCCCCCCCHHHHHHHHH
Q psy5052 84 PFSGNQWNNTKIMPFSEMLTKIK 106 (172)
Q Consensus 84 p~g~~~~~~~~~~~~~e~~~~l~ 106 (172)
|..+.+......++.+++++.+.
T Consensus 206 P~pGTp~~~~~~~s~~e~lr~ia 228 (350)
T PRK06267 206 PQKGTIFENKPSVTTLEYMNWVS 228 (350)
T ss_pred ECCCCcCCCCCCCCHHHHHHHHH
Confidence 99886544445578888766654
No 71
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=98.40 E-value=3.3e-06 Score=72.44 Aligned_cols=97 Identities=13% Similarity=0.221 Sum_probs=77.6
Q ss_pred eEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEe---cCCCHHHHHHHHHHHhcCCCe-EEEEeee
Q psy5052 8 SINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVM---KNFNDDEILDFVLLTRDRPID-VRFIEYM 83 (172)
Q Consensus 8 ~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~---~g~N~~ei~~l~~~a~~~g~~-~~~i~~~ 83 (172)
.+.|+++|.++++++.++++.++++.+++|+.+++++. .+.+.+.++ +|.|.++++++++|+++++++ +.+..|.
T Consensus 258 ~l~IglESgs~~vLk~m~r~~~~~~~~~~i~~lr~~~~-~i~i~t~~IvGfPgET~edf~~tl~fi~e~~~d~~~~f~ys 336 (440)
T PRK14862 258 YLDIPFQHASPRVLKRMKRPASVEKTLERIKKWREICP-DLTIRSTFIVGFPGETEEDFQMLLDFLKEAQLDRVGCFKYS 336 (440)
T ss_pred ccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHCC-CceecccEEEECCCCCHHHHHHHHHHHHHcCCCeeeeEeec
Confidence 68899999999999999887899999999999998754 455665544 888999999999999999985 5778899
Q ss_pred eCCCCCCC-CCCCCCHHHHHHHH
Q psy5052 84 PFSGNQWN-NTKIMPFSEMLTKI 105 (172)
Q Consensus 84 p~g~~~~~-~~~~~~~~e~~~~l 105 (172)
|.++.+.. .+..++.++..+++
T Consensus 337 P~pGT~a~~~~~~v~~~~~~~r~ 359 (440)
T PRK14862 337 PVEGATANDLPDQVPEEVKEERW 359 (440)
T ss_pred CCCCCchhhCCCCCCHHHHHHHH
Confidence 99886532 34567776654443
No 72
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=98.40 E-value=2e-06 Score=73.95 Aligned_cols=83 Identities=11% Similarity=0.326 Sum_probs=71.4
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEE-ecCCCHHHHHHHHHHHhcCCCe-EE
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVV-MKNFNDDEILDFVLLTRDRPID-VR 78 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~-~~g~N~~ei~~l~~~a~~~g~~-~~ 78 (172)
|+++|+.+|.|+++|+++++++.+++..++++++++++.++++|+..+.+.+.+ ++|.|.+++.+.++++.+++++ +.
T Consensus 157 l~~aG~~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~e~~~~~l~~~~~l~~~~i~ 236 (453)
T PRK09249 157 LRELGFNRLSLGVQDFDPEVQKAVNRIQPFEFTFALVEAARELGFTSINIDLIYGLPKQTPESFARTLEKVLELRPDRLA 236 (453)
T ss_pred HHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 578999999999999999999999888899999999999999998546655433 5889999999999999999984 56
Q ss_pred EEeee
Q psy5052 79 FIEYM 83 (172)
Q Consensus 79 ~i~~~ 83 (172)
+..+.
T Consensus 237 ~y~l~ 241 (453)
T PRK09249 237 VFNYA 241 (453)
T ss_pred EccCc
Confidence 66655
No 73
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=98.37 E-value=3e-06 Score=72.91 Aligned_cols=83 Identities=11% Similarity=0.202 Sum_probs=71.0
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEE-EEecCCCHHHHHHHHHHHhcCCCe-EE
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNV-VVMKNFNDDEILDFVLLTRDRPID-VR 78 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~-v~~~g~N~~ei~~l~~~a~~~g~~-~~ 78 (172)
|+++|+++|.|+++|+++++.+.+++..+++++.++++.++++|+..|.+.+ .-++|+|.+++.+.++++.+++++ +.
T Consensus 158 L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~p~~i~ 237 (453)
T PRK13347 158 LAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIYGLPHQTVESFRETLDKVIALSPDRIA 237 (453)
T ss_pred HHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 5789999999999999999999998888999999999999999984366553 335889999999999999999985 55
Q ss_pred EEeee
Q psy5052 79 FIEYM 83 (172)
Q Consensus 79 ~i~~~ 83 (172)
+..+.
T Consensus 238 ~y~l~ 242 (453)
T PRK13347 238 VFGYA 242 (453)
T ss_pred Eeccc
Confidence 55553
No 74
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=98.35 E-value=2.8e-06 Score=70.28 Aligned_cols=95 Identities=12% Similarity=0.051 Sum_probs=72.3
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHH--HHHHHHHHHhcCCCe-E
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDD--EILDFVLLTRDRPID-V 77 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~--ei~~l~~~a~~~g~~-~ 77 (172)
|+++|+..+.+|.++..+|. .+.+.++++++.++|+ ++.+++|+++|.|++ .+.+|.+.+.+.|+. .
T Consensus 216 L~~~~~~~~~vsh~nh~~Ei---------~~~~~~ai~~L~~aGi-~v~~qtvLl~gvnD~~~~l~~L~~~l~~~gV~py 285 (331)
T TIGR00238 216 LASFELQLMLVTHINHCNEI---------TEEFAEAMKKLRTVNV-TLLNQSVLLRGVNDRAQILAKLSIALFKVGIIPY 285 (331)
T ss_pred HHhcCCcEEEEccCCChHhC---------CHHHHHHHHHHHHcCC-EEEeecceECCcCCCHHHHHHHHHHHhhcCeecC
Confidence 45667777777766554443 2678899999999999 899999999998885 488899999999995 4
Q ss_pred EEEeeeeCCCCCCCCCCCCCHHHHHHHHHHh
Q psy5052 78 RFIEYMPFSGNQWNNTKIMPFSEMLTKIKEA 108 (172)
Q Consensus 78 ~~i~~~p~g~~~~~~~~~~~~~e~~~~l~~~ 108 (172)
.+..+.|++++.. ..++.++.++.+++.
T Consensus 286 yl~~~~~~~g~~~---f~~~~~~~~~i~~~l 313 (331)
T TIGR00238 286 YLHYLDKVQGAKH---FLVPDAEAAQIVKEL 313 (331)
T ss_pred eecCcCCCCCccc---ccCCHHHHHHHHHHH
Confidence 6677888888632 357777766666554
No 75
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=98.35 E-value=9.3e-06 Score=69.45 Aligned_cols=88 Identities=7% Similarity=0.133 Sum_probs=72.5
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEE-ecCCCHHHHHHHHHHHhcCCC-eEE
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVV-MKNFNDDEILDFVLLTRDRPI-DVR 78 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~-~~g~N~~ei~~l~~~a~~~g~-~~~ 78 (172)
|+++|+.+|.|+++|++++.-+.+.+..+++++.++++.++++|+..+.+.+.. ++|++.+++.+.++++.++++ .+.
T Consensus 147 l~~~G~~rvslGvQS~~~~~L~~l~R~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~qt~e~~~~~l~~~~~l~~~~is 226 (430)
T PRK08208 147 LAARGVNRLSIGVQSFHDSELHALHRPQKRADVHQALEWIRAAGFPILNIDLIYGIPGQTHASWMESLDQALVYRPEELF 226 (430)
T ss_pred HHHcCCCEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEE
Confidence 578999999999999999988888776789999999999999998434455432 488899999999999999998 467
Q ss_pred EEeeeeCCCC
Q psy5052 79 FIEYMPFSGN 88 (172)
Q Consensus 79 ~i~~~p~g~~ 88 (172)
+..+++..+.
T Consensus 227 ~y~L~~~~~T 236 (430)
T PRK08208 227 LYPLYVRPLT 236 (430)
T ss_pred EccccccCCC
Confidence 7777766553
No 76
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=98.34 E-value=3.1e-06 Score=68.60 Aligned_cols=70 Identities=23% Similarity=0.419 Sum_probs=61.5
Q ss_pred CCeEEEeeeCCCHhhhccccCC---CCHHHHHHHHHHHHHc-CCCcEEEEEEEecCCCHHH--HHHHHHHHhcCCCe
Q psy5052 6 LDSINISLDTLKPDKYEFITRR---KGWSRVLAGIDLAVQL-GYDNLKVNVVVMKNFNDDE--ILDFVLLTRDRPID 76 (172)
Q Consensus 6 l~~v~iSlds~~~e~~~~i~g~---~~~~~vl~~i~~~~~~-g~~~v~in~v~~~g~N~~e--i~~l~~~a~~~g~~ 76 (172)
.+.+.+|||+.++++|++|.++ .+|++++++++.+.+. .- ++-+.+++++|+|+++ +..++++.+...-+
T Consensus 130 ~dql~~sLdA~~~~~~~~InRP~~~~~~e~ile~L~~~~~~~~~-~~vir~tlvkg~N~~~e~~~~~a~ll~~~~Pd 205 (296)
T COG0731 130 PDQLYVSLDAPDEKTFRRINRPHKKDSWEKILEGLEIFRSEYKG-RTVIRTTLVKGINDDEEELEEYAELLERINPD 205 (296)
T ss_pred CCEEEEEeccCCHHHHHHhcCCCCcchHHHHHHHHHHhhhcCCC-cEEEEEEEeccccCChHHHHHHHHHHHhcCCC
Confidence 6789999999999999999876 4799999999999986 43 7999999999999986 99999999876554
No 77
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=98.31 E-value=1.1e-05 Score=69.28 Aligned_cols=99 Identities=11% Similarity=0.127 Sum_probs=78.3
Q ss_pred cCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEE---ecCCCHHHHHHHHHHHhcCCCe-EEE
Q psy5052 4 AGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVV---MKNFNDDEILDFVLLTRDRPID-VRF 79 (172)
Q Consensus 4 aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~---~~g~N~~ei~~l~~~a~~~g~~-~~~ 79 (172)
+|+.++.|+++|.++++.+.+.++.+.++++++++.++++|. .+.+++.+ .+|.|.+++.+.++|+++++.+ +.+
T Consensus 245 ~g~~~l~igvQSgs~~vLk~m~R~~~~~~~~~~v~~lr~~~~-~i~i~~d~IvG~PgEt~ed~~~tl~~i~~l~~~~i~~ 323 (440)
T PRK14334 245 AVCEYIHLPVQSGSDRVLRRMAREYRREKYLERIAEIREALP-DVVLSTDIIVGFPGETEEDFQETLSLYDEVGYDSAYM 323 (440)
T ss_pred cCCCeEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHhCC-CcEEEEeEEEECCCCCHHHHHHHHHHHHhcCCCEeee
Confidence 458999999999999999988877789999999999999986 66666543 4778999999999999999985 567
Q ss_pred EeeeeCCCCC-CCCCCCCCHHHHHH
Q psy5052 80 IEYMPFSGNQ-WNNTKIMPFSEMLT 103 (172)
Q Consensus 80 i~~~p~g~~~-~~~~~~~~~~e~~~ 103 (172)
..|.|.++.. +.....++.++..+
T Consensus 324 f~ysp~pGT~~~~~~~~v~~~~~~~ 348 (440)
T PRK14334 324 FIYSPRPGTPSYKHFQDLPREVKTE 348 (440)
T ss_pred eEeeCCCCChhHhccCCCCHHHHHH
Confidence 7788887754 23334566654433
No 78
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=98.31 E-value=8.8e-06 Score=66.54 Aligned_cols=105 Identities=12% Similarity=0.256 Sum_probs=81.3
Q ss_pred hhcCC-CeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEE-ecCCCHHHHHHHHHHHhcCCCe-EE
Q psy5052 2 KKAGL-DSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVV-MKNFNDDEILDFVLLTRDRPID-VR 78 (172)
Q Consensus 2 ~~aGl-~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~-~~g~N~~ei~~l~~~a~~~g~~-~~ 78 (172)
+++|+ ..|.+.++|.++++.+.+.+..+++.+.++++.++++|+ .+.+.+.+ ++|.+.+++.+.++++.+++++ +.
T Consensus 133 ~~~G~~~~i~lGlQS~~d~~L~~i~Rg~t~~~~~~ai~~l~~~gi-~v~~~lI~GlPget~e~~~~t~~~l~~l~~d~i~ 211 (302)
T TIGR01212 133 VERGYEVWVELGLQTAHDKTLKKINRGHDFACYVDAVKRARKRGI-KVCSHVILGLPGEDREEMMETAKIVSLLDVDGIK 211 (302)
T ss_pred hhCCceEEEEEccCcCCHHHHHHHcCcChHHHHHHHHHHHHHcCC-EEEEeEEECCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 46788 479999999999999999877789999999999999998 66665433 4778888999999999999985 67
Q ss_pred EEeeeeCCCCC----CCCC--CCCCHHHHHHHHHH
Q psy5052 79 FIEYMPFSGNQ----WNNT--KIMPFSEMLTKIKE 107 (172)
Q Consensus 79 ~i~~~p~g~~~----~~~~--~~~~~~e~~~~l~~ 107 (172)
+..++|..+.. +... ..++.+|+.+.+..
T Consensus 212 i~~l~~~pgT~L~~~~~~g~~~~~~~~e~~~~~~~ 246 (302)
T TIGR01212 212 IHPLHVVKGTKMAKMYEKGELKTLSLEEYISLACD 246 (302)
T ss_pred EEEEEecCCCHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 77888887642 1111 24566776655544
No 79
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=9e-06 Score=65.16 Aligned_cols=84 Identities=20% Similarity=0.397 Sum_probs=71.2
Q ss_pred CCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCH--HHHHHHHHHHhcCCCe--EEEEe
Q psy5052 6 LDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFND--DEILDFVLLTRDRPID--VRFIE 81 (172)
Q Consensus 6 l~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~--~ei~~l~~~a~~~g~~--~~~i~ 81 (172)
+|.+++-|.+.+++.|+++++... +.++++++.+.+.|. .|.+.+++++|+|+ +++.++++|.++++.. +.+..
T Consensus 135 ~D~v~~DlK~~~~~~y~~~tg~~~-~~vl~~~~~l~~~g~-~ve~r~lviPg~~d~~e~i~~i~~~i~~~~~~~p~~~l~ 212 (260)
T COG1180 135 LDAVLLDLKAFDDELYRKLTGADN-EPVLENLELLADLGV-HVEIRTLVIPGYNDDEEEIRELAEFIADLGPEIPIHLLR 212 (260)
T ss_pred cCeEEEeeccCChHHHHHHhCCCc-HHHHHHHHHHHcCCC-eEEEEEEEECCCCCCHHHHHHHHHHHHhcCCcccEEEec
Confidence 789999999999999999998655 999999999999998 89999999999744 6899999999986543 46666
Q ss_pred eeeCCCCCCC
Q psy5052 82 YMPFSGNQWN 91 (172)
Q Consensus 82 ~~p~g~~~~~ 91 (172)
|.|.+..+|.
T Consensus 213 fhp~~~~~~~ 222 (260)
T COG1180 213 FHPDYKLKDL 222 (260)
T ss_pred cccCcccccc
Confidence 7777766554
No 80
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=98.29 E-value=7.6e-06 Score=68.69 Aligned_cols=87 Identities=13% Similarity=0.259 Sum_probs=73.5
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEE-ecCCCHHHHHHHHHHHhcCCC-eEE
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVV-MKNFNDDEILDFVLLTRDRPI-DVR 78 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~-~~g~N~~ei~~l~~~a~~~g~-~~~ 78 (172)
|+++|++++.|.++|++++..+.+.+..+.++++++++.++++|+..|.+.+.. ++|++.+++.+-++++.++++ .+.
T Consensus 109 l~~~G~nrislGvQS~~~~~L~~l~R~~~~~~~~~ai~~~~~~g~~~v~~Dli~GlPgqt~~~~~~~l~~~~~l~~~~is 188 (370)
T PRK06294 109 LALTGINRISIGVQTFDDPLLKLLGRTHSSSKAIDAVQECSEHGFSNLSIDLIYGLPTQSLSDFIVDLHQAITLPITHIS 188 (370)
T ss_pred HHHCCCCEEEEccccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHccCCCeEE
Confidence 578999999999999999999999877789999999999999998446666433 477888899999999999998 467
Q ss_pred EEeeeeCCC
Q psy5052 79 FIEYMPFSG 87 (172)
Q Consensus 79 ~i~~~p~g~ 87 (172)
+..+.|..+
T Consensus 189 ~y~l~~~~g 197 (370)
T PRK06294 189 LYNLTIDPH 197 (370)
T ss_pred EeeeEecCC
Confidence 777777665
No 81
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=98.27 E-value=6.9e-06 Score=68.06 Aligned_cols=104 Identities=17% Similarity=0.238 Sum_probs=76.7
Q ss_pred ChhcCCCeEE-EeeeCCCHhhhccccCC-CCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeE-
Q psy5052 1 YKKAGLDSIN-ISLDTLKPDKYEFITRR-KGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDV- 77 (172)
Q Consensus 1 L~~aGl~~v~-iSlds~~~e~~~~i~g~-~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~- 77 (172)
|++||++++. ...+++++++++.+.+. .++++.+++++.++++|+ ++...+.+--|.+.+++.++++++++++.+.
T Consensus 149 Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi-~v~~~~iiGlgEt~ed~~~~l~~l~~l~~~~~ 227 (340)
T TIGR03699 149 LKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGL-PTTATMMFGHVETLEDRIEHLERIRELQDKTG 227 (340)
T ss_pred HHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCC-CccceeEeeCCCCHHHHHHHHHHHHHhchhhC
Confidence 6899999886 45677888988888653 489999999999999999 7887776656789999999999999998753
Q ss_pred EEEeeeeC----CCCCCCCCCCCCHHHHHHHH
Q psy5052 78 RFIEYMPF----SGNQWNNTKIMPFSEMLTKI 105 (172)
Q Consensus 78 ~~i~~~p~----g~~~~~~~~~~~~~e~~~~l 105 (172)
.|..++|. .+.+.......+..|.++.+
T Consensus 228 ~~~~fIP~~f~p~~tpl~~~~~~~~~e~l~~i 259 (340)
T TIGR03699 228 GFTAFIPWTFQPGNTELGKKRPATSTEYLKVL 259 (340)
T ss_pred CeeEEEeecccCCCCcccCCCCCCHHHHHHHH
Confidence 55555554 12222112346777766554
No 82
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=98.27 E-value=5.9e-06 Score=69.26 Aligned_cols=86 Identities=15% Similarity=0.206 Sum_probs=73.1
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCH-HHHHHHHHHHhcCCCe-EE
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFND-DEILDFVLLTRDRPID-VR 78 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~-~ei~~l~~~a~~~g~~-~~ 78 (172)
|.++||+.|+||+++.+|+...++.+...-.+.++-++.+.+.++ .+-.+.|+++|.|+ +++++.++-..++|++ +.
T Consensus 131 i~~~gvdev~~SVhtT~p~lR~klm~n~~A~~~le~L~~f~~~~~-~v~a~iVl~PGvNdge~L~kT~~dL~~~g~~~~~ 209 (414)
T COG1625 131 IIDAGVDEVYFSVHTTNPELRAKLMKNPNAEQLLELLRRFAERCI-EVHAQIVLCPGVNDGEELEKTLEDLEEWGAHEVI 209 (414)
T ss_pred HHHcCCCeeEEEEeeCCHHHHHHHhcCCcHHHHHHHHHHHHHhhh-heeeEEEEcCCcCcHHHHHHHHHHHHHhCcCcee
Confidence 357999999999999999999999875555669999999999998 79999999999996 5799999888899985 45
Q ss_pred EEeeeeCCC
Q psy5052 79 FIEYMPFSG 87 (172)
Q Consensus 79 ~i~~~p~g~ 87 (172)
.+.+.|+|-
T Consensus 210 ~~~~~pvGl 218 (414)
T COG1625 210 LMRVVPVGL 218 (414)
T ss_pred EEEeeccee
Confidence 544668884
No 83
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=98.26 E-value=8.3e-06 Score=70.96 Aligned_cols=86 Identities=17% Similarity=0.230 Sum_probs=74.9
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEE-ecCCCHHHHHHHHHHHhcCCCe-EE
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVV-MKNFNDDEILDFVLLTRDRPID-VR 78 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~-~~g~N~~ei~~l~~~a~~~g~~-~~ 78 (172)
|+++|+.+|.+.++|.+++..+.+++..+.+++.++|+.++++|+ .+.+++++ ++|.+.+++.+.++++.+++.+ +.
T Consensus 293 l~~aG~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi-~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~~~~ 371 (497)
T TIGR02026 293 YRRAGLVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNI-LSEAQFITGFENETDETFEETYRQLLDWDPDQAN 371 (497)
T ss_pred HHHhCCcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCC-cEEEEEEEECCCCCHHHHHHHHHHHHHcCCCceE
Confidence 478999999999999999999999877789999999999999999 78888655 4888999999999999999985 46
Q ss_pred EEeeeeCCC
Q psy5052 79 FIEYMPFSG 87 (172)
Q Consensus 79 ~i~~~p~g~ 87 (172)
+..+.|..+
T Consensus 372 ~~~~tP~PG 380 (497)
T TIGR02026 372 WLMYTPWPF 380 (497)
T ss_pred EEEecCCCC
Confidence 656777765
No 84
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=98.26 E-value=8.3e-06 Score=70.45 Aligned_cols=86 Identities=10% Similarity=0.130 Sum_probs=74.2
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEE-ecCCCHHHHHHHHHHHhcCCCe-EE
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVV-MKNFNDDEILDFVLLTRDRPID-VR 78 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~-~~g~N~~ei~~l~~~a~~~g~~-~~ 78 (172)
|+++|+.+|.+.++|.+++..+.+.++.+.+++.++++.++++|+ .+..++.+ ++|.+.+++.+.++|+.+++.+ +.
T Consensus 293 l~~aG~~~v~iGiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi-~v~~~~IiGlPget~e~~~~ti~~~~~l~~~~~~ 371 (472)
T TIGR03471 293 MKENGLRLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGI-KVHGTFILGLPGETRETIRKTIDFAKELNPHTIQ 371 (472)
T ss_pred HHHcCCCEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCC-eEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCcee
Confidence 578999999999999999999999776789999999999999999 78888755 4888999999999999999875 45
Q ss_pred EEeeeeCCC
Q psy5052 79 FIEYMPFSG 87 (172)
Q Consensus 79 ~i~~~p~g~ 87 (172)
+..+.|..+
T Consensus 372 ~~~l~P~PG 380 (472)
T TIGR03471 372 VSLAAPYPG 380 (472)
T ss_pred eeecccCCC
Confidence 555667755
No 85
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=98.20 E-value=8.6e-06 Score=67.67 Aligned_cols=104 Identities=20% Similarity=0.213 Sum_probs=74.4
Q ss_pred ChhcCCCeEE-EeeeCCCHhhhccccCCC-CHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCe-E
Q psy5052 1 YKKAGLDSIN-ISLDTLKPDKYEFITRRK-GWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPID-V 77 (172)
Q Consensus 1 L~~aGl~~v~-iSlds~~~e~~~~i~g~~-~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~-~ 77 (172)
||+||++++. .+.++.+++.+++++..+ ++++.+++|+.++++|+ ++.-.+.+=-|.+.+++.+.+.++++++.+ .
T Consensus 147 LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi-~v~s~~i~G~~Et~ed~~~~l~~lr~l~~~~~ 225 (343)
T TIGR03551 147 LKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGI-PTTATIMYGHVETPEHWVDHLLILREIQEETG 225 (343)
T ss_pred HHHhCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCC-cccceEEEecCCCHHHHHHHHHHHHHhhHHhC
Confidence 6899999998 467888899999998654 89999999999999999 554443332335777899999999998875 3
Q ss_pred EEEeeeeCC----CCCC----CCCCCCCHHHHHHHH
Q psy5052 78 RFIEYMPFS----GNQW----NNTKIMPFSEMLTKI 105 (172)
Q Consensus 78 ~~i~~~p~g----~~~~----~~~~~~~~~e~~~~l 105 (172)
.|.+++|+. +.+. .....++..+.++.+
T Consensus 226 ~~~~~iP~~f~~~gT~l~~~~~~~~~~~~~~~lr~i 261 (343)
T TIGR03551 226 GFTEFVPLPFVHYNAPLYLKGMARPGPTGREDLKVH 261 (343)
T ss_pred CeeEEEeccccCCCCccccccCCCCCCCHHHHHHHH
Confidence 555566654 3221 112346777766654
No 86
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=98.18 E-value=1.7e-05 Score=67.30 Aligned_cols=87 Identities=11% Similarity=0.260 Sum_probs=73.2
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEE-ecCCCHHHHHHHHHHHhcCCC-eEE
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVV-MKNFNDDEILDFVLLTRDRPI-DVR 78 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~-~~g~N~~ei~~l~~~a~~~g~-~~~ 78 (172)
|+++|+++|.|.++|+++++.+.+.+..+.+++.++++.++++|+..+.+.... ++|++.+++.+.++++.+++. .+.
T Consensus 121 l~~~GvnrislGvQS~~d~~L~~l~R~~~~~~~~~ai~~l~~~G~~~v~~dlI~GlPgqt~e~~~~tl~~~~~l~p~~is 200 (400)
T PRK07379 121 YRSLGVNRVSLGVQAFQDELLALCGRSHRVKDIFAAVDLIHQAGIENFSLDLISGLPHQTLEDWQASLEAAIALNPTHLS 200 (400)
T ss_pred HHHCCCCEEEEEcccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHcCCCCEEE
Confidence 578999999999999999999999877899999999999999999436655433 488899999999999999997 466
Q ss_pred EEeeeeCCC
Q psy5052 79 FIEYMPFSG 87 (172)
Q Consensus 79 ~i~~~p~g~ 87 (172)
+..+.|..+
T Consensus 201 ~y~L~~~pg 209 (400)
T PRK07379 201 CYDLVLEPG 209 (400)
T ss_pred EecceecCC
Confidence 666766654
No 87
>PLN02428 lipoic acid synthase
Probab=98.13 E-value=2.7e-05 Score=64.74 Aligned_cols=101 Identities=17% Similarity=0.220 Sum_probs=76.6
Q ss_pred ChhcCCCeEEEeeeCCCHhhhcccc-CCCCHHHHHHHHHHHHHc--CCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeE
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFIT-RRKGWSRVLAGIDLAVQL--GYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDV 77 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~-g~~~~~~vl~~i~~~~~~--g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~ 77 (172)
|+++|++.++..+++ .+..+..++ ...++++.++.++.+++. |+ .++-.+.+==|.+++|+.+++++++++|+++
T Consensus 201 L~eAG~d~i~hnlET-v~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi-~tkSg~MvGLGET~Edv~e~l~~Lrelgvd~ 278 (349)
T PLN02428 201 VATSGLDVFAHNIET-VERLQRIVRDPRAGYKQSLDVLKHAKESKPGL-LTKTSIMLGLGETDEEVVQTMEDLRAAGVDV 278 (349)
T ss_pred HHHcCCCEEccCccC-cHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC-eEEEeEEEecCCCHHHHHHHHHHHHHcCCCE
Confidence 579999999999997 568999998 456899999999999998 87 5554443322678889999999999999976
Q ss_pred EEE-eee-eCCCCCCCCCCCCCHHHHHHH
Q psy5052 78 RFI-EYM-PFSGNQWNNTKIMPFSEMLTK 104 (172)
Q Consensus 78 ~~i-~~~-p~g~~~~~~~~~~~~~e~~~~ 104 (172)
-.+ .|+ |. ........++++++|.++
T Consensus 279 vtigqyL~Ps-~~h~~v~~~v~p~~f~~~ 306 (349)
T PLN02428 279 VTFGQYLRPT-KRHLPVKEYVTPEKFEFW 306 (349)
T ss_pred EeeccccCCC-cceeeeecccCHHHHHHH
Confidence 433 554 43 323444567888887544
No 88
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=98.11 E-value=4.6e-05 Score=65.77 Aligned_cols=84 Identities=13% Similarity=0.102 Sum_probs=69.8
Q ss_pred cCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEE---ecCCCHHHHHHHHHHHhcCCCe-EEE
Q psy5052 4 AGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVV---MKNFNDDEILDFVLLTRDRPID-VRF 79 (172)
Q Consensus 4 aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~---~~g~N~~ei~~l~~~a~~~g~~-~~~ 79 (172)
.|+..+.|+++|.++++.+.++++.++++++++++.+++++. .+.+.+.+ .+|.+.+++.+.++|+++++.+ +.+
T Consensus 263 ~~~~~v~lglQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~p-gi~i~~d~IvG~PgET~ed~~~ti~~l~~l~~~~v~i 341 (459)
T PRK14338 263 KCCPHINLPVQAGDDEVLKRMRRGYTVARYRELIARIREAIP-DVSLTTDIIVGHPGETEEQFQRTYDLLEEIRFDKVHI 341 (459)
T ss_pred ccccceecCcccCCHHHHHhccCCCCHHHHHHHHHHHHHhCC-CCEEEEEEEEECCCCCHHHHHHHHHHHHHcCCCEeEE
Confidence 358899999999999999999887799999999999999842 34555433 4888999999999999999985 677
Q ss_pred EeeeeCCCC
Q psy5052 80 IEYMPFSGN 88 (172)
Q Consensus 80 i~~~p~g~~ 88 (172)
..|.|.++.
T Consensus 342 ~~ysp~pGT 350 (459)
T PRK14338 342 AAYSPRPGT 350 (459)
T ss_pred EecCCCCCC
Confidence 788888764
No 89
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=98.05 E-value=6.2e-05 Score=62.12 Aligned_cols=103 Identities=22% Similarity=0.263 Sum_probs=74.6
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHH-HHHHHHHHhcCC-C-eE
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDE-ILDFVLLTRDRP-I-DV 77 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~e-i~~l~~~a~~~g-~-~~ 77 (172)
|++||++++|--||+ +++.|++|.-..+|+.-++.++.++++|+ .+..-..+==|-..+| +..+..+ +++. . .|
T Consensus 150 L~~aGvd~ynhNLeT-s~~~y~~I~tt~t~edR~~tl~~vk~~Gi-~vcsGgI~GlGEs~eDri~~l~~L-~~l~~pdsV 226 (335)
T COG0502 150 LADAGVDRYNHNLET-SPEFYENIITTRTYEDRLNTLENVREAGI-EVCSGGIVGLGETVEDRAELLLEL-ANLPTPDSV 226 (335)
T ss_pred HHHcChhheeccccc-CHHHHcccCCCCCHHHHHHHHHHHHHcCC-ccccceEecCCCCHHHHHHHHHHH-HhCCCCCee
Confidence 689999999999999 99999999877799999999999999999 5554433311234444 5444444 4555 5 35
Q ss_pred EEEeeeeCCCCCCCCCCCCCHHHHHHHHH
Q psy5052 78 RFIEYMPFSGNQWNNTKIMPFSEMLTKIK 106 (172)
Q Consensus 78 ~~i~~~p~g~~~~~~~~~~~~~e~~~~l~ 106 (172)
-+-.++|..+.+......++.-|+++.+.
T Consensus 227 PIn~l~P~~GTPle~~~~~~~~e~lk~IA 255 (335)
T COG0502 227 PINFLNPIPGTPLENAKPLDPFEFLKTIA 255 (335)
T ss_pred eeeeecCCCCCccccCCCCCHHHHHHHHH
Confidence 55567888876655445677777766643
No 90
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=98.04 E-value=0.0001 Score=62.69 Aligned_cols=102 Identities=9% Similarity=0.163 Sum_probs=78.6
Q ss_pred hhcC--CCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHH--cCCCcEEEEEEE-ecCCCHHHHHHHHHHHhcCCCe
Q psy5052 2 KKAG--LDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQ--LGYDNLKVNVVV-MKNFNDDEILDFVLLTRDRPID 76 (172)
Q Consensus 2 ~~aG--l~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~--~g~~~v~in~v~-~~g~N~~ei~~l~~~a~~~g~~ 76 (172)
+++| ...+.+.+.|.++++.+.+.+..+.++++++++.+++ .|+ .+...+.+ ++|.+.+++.+.++|+++++.+
T Consensus 242 ~~~~~~~~~l~lglESgs~~vLk~m~R~~~~~~~~~~v~~l~~~~~gi-~i~~~~IvG~PgET~ed~~~tl~~i~~~~~~ 320 (414)
T TIGR01579 242 ASEKRLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVNKLRSVRPDY-AFGTDIIVGFPGESEEDFQETLRMVKEIEFS 320 (414)
T ss_pred HhcCccCCCeEECCCcCChHHHHhcCCCCCHHHHHHHHHHHHHhCCCC-eeeeeEEEECCCCCHHHHHHHHHHHHhCCCC
Confidence 4565 6789999999999999999877789999999999999 777 56555433 5888999999999999999985
Q ss_pred -EEEEeeeeCCCCC-CCCCCCCCHHHHHHH
Q psy5052 77 -VRFIEYMPFSGNQ-WNNTKIMPFSEMLTK 104 (172)
Q Consensus 77 -~~~i~~~p~g~~~-~~~~~~~~~~e~~~~ 104 (172)
+.+..|.|..+.+ +.....++.++..++
T Consensus 321 ~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r 350 (414)
T TIGR01579 321 HLHIFPYSARPGTPASTMKDKVPETIKKER 350 (414)
T ss_pred EEEeeecCCCCCCchhhCCCCCCHHHHHHH
Confidence 5777788887754 222334666554443
No 91
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=98.02 E-value=8.3e-05 Score=63.51 Aligned_cols=99 Identities=9% Similarity=0.121 Sum_probs=75.6
Q ss_pred Chhc--CCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcC--CCcEEEEEEE-ecCCCHHHHHHHHHHHhcCCC
Q psy5052 1 YKKA--GLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLG--YDNLKVNVVV-MKNFNDDEILDFVLLTRDRPI 75 (172)
Q Consensus 1 L~~a--Gl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g--~~~v~in~v~-~~g~N~~ei~~l~~~a~~~g~ 75 (172)
|+++ |+..+.+++.|.++++.+.+.++.+.+++.+.++.++++| + .+...+.+ ++|.+.+++.+.++|+++++.
T Consensus 242 m~~~~~~~~~l~igiES~s~~vLk~m~R~~~~~~~~~~i~~lr~~~~~i-~i~~~~IvG~PgET~ed~~~tl~~i~~~~~ 320 (429)
T TIGR00089 242 IAENPKVCKHLHLPVQSGSDRILKRMNRKYTREEYLDIVEKIRAKIPDA-AITTDIIVGFPGETEEDFEETLDLVEEVKF 320 (429)
T ss_pred HHhCCCccCceeeccccCChHHHHhCCCCCCHHHHHHHHHHHHHHCCCC-EEEeeEEEECCCCCHHHHHHHHHHHHhcCC
Confidence 3556 4889999999999999999887778999999999999988 4 34433322 478899999999999999998
Q ss_pred e-EEEEeeeeCCCCC-CCCCCCCCHHH
Q psy5052 76 D-VRFIEYMPFSGNQ-WNNTKIMPFSE 100 (172)
Q Consensus 76 ~-~~~i~~~p~g~~~-~~~~~~~~~~e 100 (172)
+ +.+..|.|..+.. +.....++.+.
T Consensus 321 ~~~~~~~~sp~pgT~~~~~~~~v~~~~ 347 (429)
T TIGR00089 321 DKLHSFIYSPRPGTPAADMKDQVPEEV 347 (429)
T ss_pred CEeeccccCCCCCCchhhCCCCCCHHH
Confidence 5 5777788887643 32333455544
No 92
>PTZ00413 lipoate synthase; Provisional
Probab=97.99 E-value=8.2e-05 Score=62.29 Aligned_cols=101 Identities=9% Similarity=0.118 Sum_probs=78.6
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccC-CCCHHHHHHHHHHHHHc---CCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCe
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITR-RKGWSRVLAGIDLAVQL---GYDNLKVNVVVMKNFNDDEILDFVLLTRDRPID 76 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g-~~~~~~vl~~i~~~~~~---g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~ 76 (172)
|++||++.++--|++ .|..|..++. ..+|++.++.|+.++++ |+ .++-...+=-|.+++|+.++++.++++|++
T Consensus 248 L~eAG~dvynHNLET-v~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi-~tcSGiIVGLGET~eEvie~m~dLrelGVD 325 (398)
T PTZ00413 248 LANSPLSVYAHNIEC-VERITPYVRDRRASYRQSLKVLEHVKEFTNGAM-LTKSSIMLGLGETEEEVRQTLRDLRTAGVS 325 (398)
T ss_pred HHhcCCCEEeccccc-CHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCc-eEeeeeEecCCCCHHHHHHHHHHHHHcCCc
Confidence 589999999999999 5789999995 46899999999999986 66 455444444677899999999999999998
Q ss_pred EEEE-ee-eeCCCCCCCCCCCCCHHHHHHH
Q psy5052 77 VRFI-EY-MPFSGNQWNNTKIMPFSEMLTK 104 (172)
Q Consensus 77 ~~~i-~~-~p~g~~~~~~~~~~~~~e~~~~ 104 (172)
+--| +| .|... .+....++++++|.++
T Consensus 326 ivtIGQYL~Ps~~-h~~V~~yv~P~~F~~~ 354 (398)
T PTZ00413 326 AVTLGQYLQPTKT-RLKVSRYAHPKEFEMW 354 (398)
T ss_pred EEeeccccCCCcc-cCCceeccCHHHHHHH
Confidence 6444 54 46654 3444567888887554
No 93
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=97.99 E-value=4.8e-05 Score=64.66 Aligned_cols=95 Identities=13% Similarity=0.074 Sum_probs=68.4
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHH--HHHHHHHHHhcCCCeE-
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDD--EILDFVLLTRDRPIDV- 77 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~--ei~~l~~~a~~~g~~~- 77 (172)
|++++...|++|+|+.. |. ++.+.+|+++++++|+ ++..++|+++|+||+ -+.+|.+-..+.||..
T Consensus 212 Lk~~~~~~v~~h~nhp~-Ei---------t~~a~~Al~~L~~aGI-~l~nQsVLLkGVND~~~~l~~L~~~L~~~gV~PY 280 (417)
T TIGR03820 212 LKKHHPVWLNTHFNHPR-EI---------TASSKKALAKLADAGI-PLGNQSVLLAGVNDCPRIMKKLVHKLVANRVRPY 280 (417)
T ss_pred HHhcCCeEEEEeCCChH-hC---------hHHHHHHHHHHHHcCC-EEEeeceEECCcCCCHHHHHHHHHHHHHCCCeec
Confidence 46677778889999863 32 6999999999999999 899999999999997 3666776667788875
Q ss_pred EEEeeeeCCCCCCCCCCCCCHH---HHHHHHHHhC
Q psy5052 78 RFIEYMPFSGNQWNNTKIMPFS---EMLTKIKEAH 109 (172)
Q Consensus 78 ~~i~~~p~g~~~~~~~~~~~~~---e~~~~l~~~~ 109 (172)
.+...-|+.+.... ..+.+ ++.+.|+...
T Consensus 281 Yl~~~d~v~G~~hF---rv~~~~g~~I~~~lr~~~ 312 (417)
T TIGR03820 281 YLYQCDLSEGLSHF---RTPVGKGIEIIESLIGHT 312 (417)
T ss_pred eeeeccCCCCcccc---cCcHHHHHHHHHHHHHhC
Confidence 44445566554322 24444 4555555554
No 94
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=97.98 E-value=0.00016 Score=61.27 Aligned_cols=87 Identities=13% Similarity=0.172 Sum_probs=72.1
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEE-ecCCCHHHHHHHHHHHhcCCC-eEE
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVV-MKNFNDDEILDFVLLTRDRPI-DVR 78 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~-~~g~N~~ei~~l~~~a~~~g~-~~~ 78 (172)
|+++|+++|.|.+.|+++++.+.+.+..+.+++.++|+.+++.+. .|.+.... ++|++.+++.+-++++.+++. .+.
T Consensus 128 l~~~GvnrisiGvQS~~~~~L~~l~R~~~~~~~~~~i~~~~~~~~-~v~~dlI~GlPgqt~~~~~~~l~~~~~l~p~~is 206 (394)
T PRK08898 128 FRASGVNRLSIGIQSFNDAHLKALGRIHDGAEARAAIEIAAKHFD-NFNLDLMYALPGQTLDEALADVETALAFGPPHLS 206 (394)
T ss_pred HHHcCCCeEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHhCC-ceEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 578999999999999999999998777789999999999998764 56665433 477888999888999999988 567
Q ss_pred EEeeeeCCCC
Q psy5052 79 FIEYMPFSGN 88 (172)
Q Consensus 79 ~i~~~p~g~~ 88 (172)
+..+++..+.
T Consensus 207 ~y~l~~~~gT 216 (394)
T PRK08898 207 LYHLTLEPNT 216 (394)
T ss_pred EeeeEECCCC
Confidence 7777776654
No 95
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=97.93 E-value=0.00014 Score=62.28 Aligned_cols=99 Identities=9% Similarity=0.120 Sum_probs=75.7
Q ss_pred hhc--CCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHc--CCCcEEEEEE-EecCCCHHHHHHHHHHHhcCCCe
Q psy5052 2 KKA--GLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQL--GYDNLKVNVV-VMKNFNDDEILDFVLLTRDRPID 76 (172)
Q Consensus 2 ~~a--Gl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~--g~~~v~in~v-~~~g~N~~ei~~l~~~a~~~g~~ 76 (172)
+++ |+..+.+++.|.+++.-+.++++.+.+++.++++.++++ |+ .+...+. =.+|.+.+++.+.++|+++++.+
T Consensus 249 ~~~~~~~~~l~igiqSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~~gi-~i~~d~IvG~PgET~ed~~~tl~~l~~l~~~ 327 (437)
T PRK14331 249 ADIPQVCEHLHLPFQAGSDRILKLMDRGYTKEEYLEKIELLKEYIPDI-TFSTDIIVGFPTETEEDFEETLDVLKKVEFE 327 (437)
T ss_pred HcCCccCCceecccccCChHHHHHcCCCCCHHHHHHHHHHHHHhCCCC-EEecCEEEECCCCCHHHHHHHHHHHHhcCcc
Confidence 455 588999999999999999988777899999999999988 66 4544433 35889999999999999999975
Q ss_pred -EEEEeeeeCCCCC-CCCCCCCCHHHH
Q psy5052 77 -VRFIEYMPFSGNQ-WNNTKIMPFSEM 101 (172)
Q Consensus 77 -~~~i~~~p~g~~~-~~~~~~~~~~e~ 101 (172)
+.+..|.|..+.+ +.....++.++.
T Consensus 328 ~i~~f~~sp~pGT~~~~~~~~~~~~~~ 354 (437)
T PRK14331 328 QVFSFKYSPRPGTPAAYMEGQEPDEVK 354 (437)
T ss_pred eeeeeEecCCCCcchhhCCCCCCHHHH
Confidence 3556788887643 333334555543
No 96
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=97.92 E-value=7.2e-05 Score=62.39 Aligned_cols=104 Identities=20% Similarity=0.194 Sum_probs=74.1
Q ss_pred ChhcCCCeEE-EeeeCCCHhhhccccCC-CCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeE-
Q psy5052 1 YKKAGLDSIN-ISLDTLKPDKYEFITRR-KGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDV- 77 (172)
Q Consensus 1 L~~aGl~~v~-iSlds~~~e~~~~i~g~-~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~- 77 (172)
|++||++++. ..+.+.+++.+.++... ...++.++.++.++++|+ ++.-.+.+=-|.+.+|..+.+...++++.+.
T Consensus 156 LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi-~~~sg~i~GlgEt~edrv~~l~~Lr~l~~~~~ 234 (351)
T TIGR03700 156 LKEAGLDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELGL-KTNATMLYGHIETPAHRVDHMLRLRELQDETG 234 (351)
T ss_pred HHHcCCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcCC-CcceEEEeeCCCCHHHHHHHHHHHHHhhHhhC
Confidence 6899999997 68999999999999754 468899999999999999 6765554444567778777777788777753
Q ss_pred EEEeeeeCC----CCCCCCC--CCCCHHHHHHHH
Q psy5052 78 RFIEYMPFS----GNQWNNT--KIMPFSEMLTKI 105 (172)
Q Consensus 78 ~~i~~~p~g----~~~~~~~--~~~~~~e~~~~l 105 (172)
-|.+|+|.. +.+.... ...+..|.++.+
T Consensus 235 ~f~~fiP~~f~~~~tpl~~~~~~~~~~~e~lr~i 268 (351)
T TIGR03700 235 GFQAFIPLAFQPDNNRLNRLLAKGPTGLDDLKTL 268 (351)
T ss_pred CceEEEeecccCCCCcccCCCCCCCCHHHHHHHH
Confidence 444566663 2222111 246677765553
No 97
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=97.91 E-value=0.00018 Score=61.77 Aligned_cols=99 Identities=10% Similarity=0.031 Sum_probs=74.6
Q ss_pred hhcC--CCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEE---ecCCCHHHHHHHHHHHhcCCCe
Q psy5052 2 KKAG--LDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVV---MKNFNDDEILDFVLLTRDRPID 76 (172)
Q Consensus 2 ~~aG--l~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~---~~g~N~~ei~~l~~~a~~~g~~ 76 (172)
+++| +..+.++++|.++++-+.+.++.+.+++.++++.+++++. .+.+++.+ .+|.+.+++.+.++|+++++.+
T Consensus 253 ~~~~~~~~~l~igiqSgs~~vLk~m~R~~~~~~~~~~i~~lr~~~~-gi~v~~~~IvG~PgET~ed~~~tl~~i~~~~~~ 331 (444)
T PRK14325 253 ADLPKLVPFLHLPVQSGSDRILKAMNRGHTALEYKSIIRKLRAARP-DIAISSDFIVGFPGETDEDFEATMKLIEDVGFD 331 (444)
T ss_pred HcCCcccCceeccCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHHCC-CCEEEeeEEEECCCCCHHHHHHHHHHHHhcCCC
Confidence 4554 7899999999999999988777789999999999999843 33444433 4888999999999999999985
Q ss_pred -EEEEeeeeCCCCC-CCCCCCCCHHHH
Q psy5052 77 -VRFIEYMPFSGNQ-WNNTKIMPFSEM 101 (172)
Q Consensus 77 -~~~i~~~p~g~~~-~~~~~~~~~~e~ 101 (172)
+.+..|.|..+.+ +..+..++.+..
T Consensus 332 ~~~~~~~sp~pGT~~~~~~~~v~~~~~ 358 (444)
T PRK14325 332 QSFSFIYSPRPGTPAADLPDDVPEEVK 358 (444)
T ss_pred eeeeeeccCCCCCchhhCCCCCCHHHH
Confidence 4566778887653 222334555543
No 98
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=97.91 E-value=0.00011 Score=63.33 Aligned_cols=87 Identities=15% Similarity=0.207 Sum_probs=73.0
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEE-ecCCCHHHHHHHHHHHhcCCCe-EE
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVV-MKNFNDDEILDFVLLTRDRPID-VR 78 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~-~~g~N~~ei~~l~~~a~~~g~~-~~ 78 (172)
|+++|+++|.|.+.|+++++.+.+.+..+.++++++|+.++++|+..|.+.+.. ++|++.+++.+-++++.+++.+ +.
T Consensus 169 l~~aGvnRiSiGVQSf~d~vLk~lgR~~~~~~~~~~i~~l~~~g~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~~~~is 248 (449)
T PRK09058 169 ALDAGANRFSIGVQSFNTQVRRRAGRKDDREEVLARLEELVARDRAAVVCDLIFGLPGQTPEIWQQDLAIVRDLGLDGVD 248 (449)
T ss_pred HHHcCCCEEEecCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCCCCcEEEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 578999999999999999999999877789999999999999995356666543 5888999999999999999984 66
Q ss_pred EEeeeeCCC
Q psy5052 79 FIEYMPFSG 87 (172)
Q Consensus 79 ~i~~~p~g~ 87 (172)
+..+.+..+
T Consensus 249 ~y~L~~~pg 257 (449)
T PRK09058 249 LYALNLLPG 257 (449)
T ss_pred EeccccCCC
Confidence 666666654
No 99
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=97.90 E-value=0.00031 Score=60.62 Aligned_cols=100 Identities=10% Similarity=0.151 Sum_probs=78.3
Q ss_pred cCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHc--CCCcEEEEEEE-ecCCCHHHHHHHHHHHhcCCCe-EEE
Q psy5052 4 AGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQL--GYDNLKVNVVV-MKNFNDDEILDFVLLTRDRPID-VRF 79 (172)
Q Consensus 4 aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~--g~~~v~in~v~-~~g~N~~ei~~l~~~a~~~g~~-~~~ 79 (172)
+|...+.|.+.|.++++-+.+.++.+.++.+++++.++++ |+ .+...+.+ .+|.+.+++.+.++|+++++.+ +.+
T Consensus 266 ~gc~~l~iglQSgsd~vLk~m~R~~t~e~~~~~v~~ir~~~pgi-~i~~d~IvGfPgET~edf~~Tl~~i~~l~~~~~~~ 344 (455)
T PRK14335 266 RLCRLVHLPVQHGSNGVLKRMNRSYTREHYLSLVGKLKASIPNV-ALSTDILIGFPGETEEDFEQTLDLMREVEFDSAFM 344 (455)
T ss_pred CCCCeEEEccCcCCHHHHHHcCCCCCHHHHHHHHHHHHHhCCCC-EEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEE
Confidence 5899999999999999999887777899999999999998 76 55555433 4888999999999999999985 577
Q ss_pred EeeeeCCCCC-CCCCCCCCHHHHHHH
Q psy5052 80 IEYMPFSGNQ-WNNTKIMPFSEMLTK 104 (172)
Q Consensus 80 i~~~p~g~~~-~~~~~~~~~~e~~~~ 104 (172)
..|.|..+.+ +.....++.+...++
T Consensus 345 ~~~sp~pGT~~~~~~~~v~~~~k~~R 370 (455)
T PRK14335 345 YHYNPREGTPAYDFPDRIPDEVKIAR 370 (455)
T ss_pred EEecCCCCCchhhCCCCCCHHHHHHH
Confidence 7788888753 333445666554333
No 100
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=97.86 E-value=0.00011 Score=60.24 Aligned_cols=105 Identities=23% Similarity=0.227 Sum_probs=73.4
Q ss_pred ChhcCCCeEE-EeeeCCCHhhhccccCC-CCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeE-
Q psy5052 1 YKKAGLDSIN-ISLDTLKPDKYEFITRR-KGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDV- 77 (172)
Q Consensus 1 L~~aGl~~v~-iSlds~~~e~~~~i~g~-~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~- 77 (172)
|++||++++. ++..+++++.++++... .+.++.++.++.++++|+ ++...+.+=-|.+.+|+.+++.++++++.+.
T Consensus 113 LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi-~~~s~~iiG~~Et~ed~~~~l~~lr~l~~~~~ 191 (309)
T TIGR00423 113 LKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLGI-PTTATMMFGHVENPEHRVEHLLRIRKIQEKTG 191 (309)
T ss_pred HHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCC-CceeeEEecCCCCHHHHHHHHHHHHhhchhhC
Confidence 6899999996 79999999999988653 478999999999999998 5664443322357778888999999888752
Q ss_pred EEEeeeeCC----CCC-CCCC--CCCCHHHHHHHHH
Q psy5052 78 RFIEYMPFS----GNQ-WNNT--KIMPFSEMLTKIK 106 (172)
Q Consensus 78 ~~i~~~p~g----~~~-~~~~--~~~~~~e~~~~l~ 106 (172)
.|.+++|.. +.+ .... ...+..|.++.+.
T Consensus 192 ~f~~fiP~~f~~~~t~~l~~~~~~~~~~~e~lr~iA 227 (309)
T TIGR00423 192 GFTEFIPLPFQPENNPYLEGEVRKGASGIDDLKVIA 227 (309)
T ss_pred CeeeEEeeeecCCCChhhccCCCCCCCHHHHHHHHH
Confidence 444455532 111 1111 3467777666543
No 101
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=97.80 E-value=0.00022 Score=60.40 Aligned_cols=86 Identities=13% Similarity=0.199 Sum_probs=69.0
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEE-ecCCCHHHHHHHHHHHhcCCC-eEE
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVV-MKNFNDDEILDFVLLTRDRPI-DVR 78 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~-~~g~N~~ei~~l~~~a~~~g~-~~~ 78 (172)
|+++|+++|.|.++|+++++.+.+.+..+.++++++++.+++++. .|.+.... ++|++.+++.+-++.+.+++. .+.
T Consensus 117 l~~~GvnRiSiGvQS~~d~~L~~lgR~h~~~~~~~ai~~~~~~~~-~v~~DlI~GlPgqt~e~~~~~l~~~~~l~p~his 195 (390)
T PRK06582 117 FKLAGINRVSIGVQSLKEDDLKKLGRTHDCMQAIKTIEAANTIFP-RVSFDLIYARSGQTLKDWQEELKQAMQLATSHIS 195 (390)
T ss_pred HHHCCCCEEEEECCcCCHHHHHHcCCCCCHHHHHHHHHHHHHhCC-cEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 578999999999999999999998877789999999999998854 56555433 578888888888888888887 467
Q ss_pred EEeeeeCCC
Q psy5052 79 FIEYMPFSG 87 (172)
Q Consensus 79 ~i~~~p~g~ 87 (172)
+..+.+..+
T Consensus 196 ~y~L~i~~g 204 (390)
T PRK06582 196 LYQLTIEKG 204 (390)
T ss_pred EecCEEccC
Confidence 766665543
No 102
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=97.79 E-value=0.00022 Score=60.13 Aligned_cols=86 Identities=16% Similarity=0.232 Sum_probs=70.5
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEE-ecCCCHHHHHHHHHHHhcCCCe-EE
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVV-MKNFNDDEILDFVLLTRDRPID-VR 78 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~-~~g~N~~ei~~l~~~a~~~g~~-~~ 78 (172)
|+++|+++|.|.+.|+++++.+.+.+..+.+.+.++++.+++++. .|.+.+.. ++|++.+++.+-++.+.+++.+ +.
T Consensus 110 l~~~GvnrislGvQS~~d~vL~~l~R~~~~~~~~~ai~~~~~~~~-~v~~dli~GlPgqt~~~~~~~l~~~~~l~p~~is 188 (380)
T PRK09057 110 YRAAGVNRVSLGVQALNDADLRFLGRLHSVAEALAAIDLAREIFP-RVSFDLIYARPGQTLAAWRAELKEALSLAADHLS 188 (380)
T ss_pred HHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHhCc-cEEEEeecCCCCCCHHHHHHHHHHHHhcCCCeEE
Confidence 578999999999999999999999877799999999999999865 56665433 4788888888888888888874 67
Q ss_pred EEeeeeCCC
Q psy5052 79 FIEYMPFSG 87 (172)
Q Consensus 79 ~i~~~p~g~ 87 (172)
+..+.+..+
T Consensus 189 ~y~L~~~~g 197 (380)
T PRK09057 189 LYQLTIEEG 197 (380)
T ss_pred eecceecCC
Confidence 777766654
No 103
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=97.77 E-value=0.00048 Score=59.11 Aligned_cols=88 Identities=11% Similarity=0.159 Sum_probs=70.1
Q ss_pred ChhcC--CCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEE---ecCCCHHHHHHHHHHHhcCCC
Q psy5052 1 YKKAG--LDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVV---MKNFNDDEILDFVLLTRDRPI 75 (172)
Q Consensus 1 L~~aG--l~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~---~~g~N~~ei~~l~~~a~~~g~ 75 (172)
|+++| +..+.+++.|.++++-+.++++...++.+++++.+++++. .+.+.+.+ .+|.+.+++.+.++|+++++.
T Consensus 250 l~~~g~~~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~ir~~~~-~i~i~~d~IvG~PgEt~ed~~~tl~~i~~~~~ 328 (438)
T TIGR01574 250 FANNPKLCKSMHLPVQSGSSEILKLMKRGYTREWYLNLVRKLRAACP-NVSISTDIIVGFPGETEEDFEETLDLLREVEF 328 (438)
T ss_pred HHhCCCccCceeeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCC-CCeEeeCEEEeCCCCCHHHHHHHHHHHHhcCC
Confidence 45677 8899999999999999988877788999999999998732 34444332 477889999999999999987
Q ss_pred e-EEEEeeeeCCCCC
Q psy5052 76 D-VRFIEYMPFSGNQ 89 (172)
Q Consensus 76 ~-~~~i~~~p~g~~~ 89 (172)
+ +.+..|.|..+..
T Consensus 329 ~~~~~~~~sp~pGT~ 343 (438)
T TIGR01574 329 DSAFSFIYSPRPGTP 343 (438)
T ss_pred CeeeeEEecCCCCCc
Confidence 4 5667788887643
No 104
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=97.76 E-value=0.00051 Score=56.51 Aligned_cols=86 Identities=14% Similarity=0.182 Sum_probs=66.2
Q ss_pred ChhcCCC-eEEEeeeCCCHhhhc-cccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEe-cCCC----HHHHHHHHHHHhcC
Q psy5052 1 YKKAGLD-SINISLDTLKPDKYE-FITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVM-KNFN----DDEILDFVLLTRDR 73 (172)
Q Consensus 1 L~~aGl~-~v~iSlds~~~e~~~-~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~-~g~N----~~ei~~l~~~a~~~ 73 (172)
|+++|+. +|.|.+.|+++++.+ .+.++.+++++.++++.++++|+ .++..+.+= ++.+ .+++.+.++++..+
T Consensus 123 l~~aG~~~~v~iG~ES~~d~~L~~~inKg~t~~~~~~ai~~~~~~Gi-~v~~~~i~G~P~~se~ea~ed~~~ti~~~~~l 201 (313)
T TIGR01210 123 LRKIGVNVEVAVGLETANDRIREKSINKGSTFEDFIRAAELARKYGA-GVKAYLLFKPPFLSEKEAIADMISSIRKCIPV 201 (313)
T ss_pred HHHcCCCEEEEEecCcCCHHHHHHhhCCCCCHHHHHHHHHHHHHcCC-cEEEEEEecCCCCChhhhHHHHHHHHHHHHhc
Confidence 5789998 799999999999985 67776789999999999999999 677776442 4323 34566678888888
Q ss_pred CCeEEEEeeeeCCC
Q psy5052 74 PIDVRFIEYMPFSG 87 (172)
Q Consensus 74 g~~~~~i~~~p~g~ 87 (172)
+-.+.+..+.|..+
T Consensus 202 ~~~vs~~~l~v~~g 215 (313)
T TIGR01210 202 TDTVSINPTNVQKG 215 (313)
T ss_pred CCcEEEECCEEeCC
Confidence 74466666666654
No 105
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=97.75 E-value=0.00052 Score=59.08 Aligned_cols=96 Identities=13% Similarity=0.114 Sum_probs=75.6
Q ss_pred cCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHc--CCCcEEEEEEE-ecCCCHHHHHHHHHHHhcCCCe-EEE
Q psy5052 4 AGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQL--GYDNLKVNVVV-MKNFNDDEILDFVLLTRDRPID-VRF 79 (172)
Q Consensus 4 aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~--g~~~v~in~v~-~~g~N~~ei~~l~~~a~~~g~~-~~~ 79 (172)
.|...+.+.+.|.++++-+.+.++.+.++..++++.++++ |+ .+...+.+ .+|.+.+++.+.++|+++++.+ +.+
T Consensus 256 ~g~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~pgi-~i~td~IvGfPgET~edf~~tl~~~~~~~~~~~~~ 334 (445)
T PRK14340 256 NICNHIHLPVQSGSSRMLRRMNRGHTIEEYLEKIALIRSAIPGV-TLSTDLIAGFCGETEEDHRATLSLMEEVRFDSAFM 334 (445)
T ss_pred CCCCeEEECCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC-EEeccEEEECCCCCHHHHHHHHHHHHhcCCCEEee
Confidence 3789999999999999999988777899999999999998 77 55544433 4888999999999999999975 466
Q ss_pred EeeeeCCCCC-CC-CCCCCCHHH
Q psy5052 80 IEYMPFSGNQ-WN-NTKIMPFSE 100 (172)
Q Consensus 80 i~~~p~g~~~-~~-~~~~~~~~e 100 (172)
..|.|..+.+ +. .+..++.+.
T Consensus 335 f~~sp~pGT~~~~~~~~~v~~~~ 357 (445)
T PRK14340 335 FYYSVRPGTLAARTLPDDVPEEV 357 (445)
T ss_pred EEecCCCCChhhhhCCCCCCHHH
Confidence 7788887754 32 334566443
No 106
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=97.74 E-value=0.00058 Score=58.34 Aligned_cols=99 Identities=10% Similarity=0.038 Sum_probs=75.2
Q ss_pred CCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEE---ecCCCHHHHHHHHHHHhcCCCe-EEEE
Q psy5052 5 GLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVV---MKNFNDDEILDFVLLTRDRPID-VRFI 80 (172)
Q Consensus 5 Gl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~---~~g~N~~ei~~l~~~a~~~g~~-~~~i 80 (172)
|...+.|.+.|.++++-+.+.++.+.++.+++++.++++.- .+.+.+-+ .||.+.+++++.++|+++++.+ +..+
T Consensus 239 ~~~~l~iglQSgsd~vLk~M~R~~t~~~~~~~v~~lr~~~p-~i~i~~d~IvGfPgETeedf~~Tl~fl~~l~~~~~~~f 317 (420)
T PRK14339 239 ICKSIHMPLQSGSSEILKAMKRGYTKEWFLNRAEKLRALVP-EVSISTDIIVGFPGESDKDFEDTMDVLEKVRFEQIFSF 317 (420)
T ss_pred ccCceEeCCccCCHHHHHhccCCCCHHHHHHHHHHHHHHCC-CCEEEEEEEEECCCCCHHHHHHHHHHHHhcCCCEEeeE
Confidence 57899999999999999999877789999999999998732 23444333 4788999999999999999986 5666
Q ss_pred eeeeCCCCC-CCCCCCCCHHHHHHH
Q psy5052 81 EYMPFSGNQ-WNNTKIMPFSEMLTK 104 (172)
Q Consensus 81 ~~~p~g~~~-~~~~~~~~~~e~~~~ 104 (172)
.|.|..+.+ +..+..++.+...++
T Consensus 318 ~~sp~pGT~a~~~~~~v~~~~k~~R 342 (420)
T PRK14339 318 KYSPRPLTEAAAWKNQVDEEVASER 342 (420)
T ss_pred ecCCCCCCchhhCCCCCCHHHHHHH
Confidence 788887754 333445666554443
No 107
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=97.72 E-value=0.00063 Score=58.30 Aligned_cols=98 Identities=15% Similarity=0.315 Sum_probs=74.0
Q ss_pred hhcC--CCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHc--CCCcEEEEEEE-ecCCCHHHHHHHHHHHhcCCCe
Q psy5052 2 KKAG--LDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQL--GYDNLKVNVVV-MKNFNDDEILDFVLLTRDRPID 76 (172)
Q Consensus 2 ~~aG--l~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~--g~~~v~in~v~-~~g~N~~ei~~l~~~a~~~g~~ 76 (172)
+++| +..+.|.+.|.+++.-+.+.++...++..++++.+++. |+ .+...+.+ .+|.+.+++.+.++|+++++++
T Consensus 244 ~~~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~~i-~i~~d~IvGfPgET~edf~~tl~fi~~~~~~ 322 (434)
T PRK14330 244 ANSPKVAKSIHLPVQSGSNRILKLMNRRYTREEYLELIEKIRSKVPDA-SISSDIIVGFPTETEEDFMETVDLVEKAQFE 322 (434)
T ss_pred hcCCcccCceecCcCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC-EEEEEEEEECCCCCHHHHHHHHHHHHhcCCC
Confidence 4566 67899999999999999887766899999999999987 44 34443322 4788999999999999999985
Q ss_pred -EEEEeeeeCCCCC-CC-CCCCCCHHH
Q psy5052 77 -VRFIEYMPFSGNQ-WN-NTKIMPFSE 100 (172)
Q Consensus 77 -~~~i~~~p~g~~~-~~-~~~~~~~~e 100 (172)
+.+..|.|..+.+ +. .+..++.++
T Consensus 323 ~~~~~~~sp~pGT~~~~~~~~~v~~~~ 349 (434)
T PRK14330 323 RLNLAIYSPREGTVAWKYYKDDVPYEE 349 (434)
T ss_pred EEeeeeccCCCCChhhhhCccCCCHHH
Confidence 5777788887754 22 233455544
No 108
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=97.72 E-value=0.00035 Score=57.20 Aligned_cols=100 Identities=18% Similarity=0.158 Sum_probs=73.8
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEec--CCCHHHHHHHHHHHhcCCCeE-
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMK--NFNDDEILDFVLLTRDRPIDV- 77 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~--g~N~~ei~~l~~~a~~~g~~~- 77 (172)
|+++|.+.++.-+.+. +..+.+++++.++++.++.++.+++.+- .+.+.+.+|= |.+.+|+.+.+++++++|++.
T Consensus 162 l~~aG~dv~~hnlEt~-~~l~~~vrr~~t~e~~Le~l~~ak~~~p-gi~~~TgiIVGlGETeee~~etl~~Lrelg~d~v 239 (302)
T TIGR00510 162 LLDAPPDVYNHNLETV-ERLTPFVRPGATYRWSLKLLERAKEYLP-NLPTKSGIMVGLGETNEEIKQTLKDLRDHGVTMV 239 (302)
T ss_pred HHHcCchhhcccccch-HHHHHHhCCCCCHHHHHHHHHHHHHhCC-CCeecceEEEECCCCHHHHHHHHHHHHhcCCCEE
Confidence 4789999999888888 7899999877799999999999999831 2344443333 567889999999999999975
Q ss_pred EEEeee-eCCCCCCCCCCCCCHHHHHH
Q psy5052 78 RFIEYM-PFSGNQWNNTKIMPFSEMLT 103 (172)
Q Consensus 78 ~~i~~~-p~g~~~~~~~~~~~~~e~~~ 103 (172)
.+..|+ |... .+....++++++|..
T Consensus 240 ~igqYl~p~~~-~~~v~~~~~p~~f~~ 265 (302)
T TIGR00510 240 TLGQYLRPSRR-HLPVKRYVSPEEFDY 265 (302)
T ss_pred EeecccCCCCC-CCccccCCCHHHHHH
Confidence 444554 5443 344456777777633
No 109
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=97.71 E-value=0.00076 Score=58.12 Aligned_cols=100 Identities=14% Similarity=0.140 Sum_probs=76.4
Q ss_pred ChhcC--CCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEe---cCCCHHHHHHHHHHHhcCCC
Q psy5052 1 YKKAG--LDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVM---KNFNDDEILDFVLLTRDRPI 75 (172)
Q Consensus 1 L~~aG--l~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~---~g~N~~ei~~l~~~a~~~g~ 75 (172)
|+++| +..+.+.+.|.+++..+.++++.+.++..++++.++++.- .+.|.+.++ ||.+.+++.+.++|+++++.
T Consensus 254 m~~~~~~~~~l~lgvQSgsd~vLk~m~R~~t~~~~~~~i~~lr~~~p-~i~i~td~IvGfPgET~edf~~tl~~v~~l~~ 332 (449)
T PRK14332 254 MAKNPRFCPNIHLPLQAGNTRVLEEMKRSYSKEEFLDVVKEIRNIVP-DVGITTDIIVGFPNETEEEFEDTLAVVREVQF 332 (449)
T ss_pred HHhCCCccceEEECCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHhCC-CCEEEEEEEeeCCCCCHHHHHHHHHHHHhCCC
Confidence 35666 7899999999999999999877789999999999998742 455554443 77899999999999999998
Q ss_pred e-EEEEeeeeCCCCCC--CCCCCCCHHHH
Q psy5052 76 D-VRFIEYMPFSGNQW--NNTKIMPFSEM 101 (172)
Q Consensus 76 ~-~~~i~~~p~g~~~~--~~~~~~~~~e~ 101 (172)
+ +.+..|.|..+... ..+..++.++.
T Consensus 333 ~~~~~f~ys~~~GT~a~~~~~~~v~~~~~ 361 (449)
T PRK14332 333 DMAFMFKYSEREGTMAKRKLPDNVPEEVK 361 (449)
T ss_pred CEEEEEEecCCCCChhHHhCcCCCCHHHH
Confidence 6 46777888876532 12334565543
No 110
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=97.70 E-value=0.00066 Score=59.30 Aligned_cols=88 Identities=8% Similarity=0.091 Sum_probs=70.6
Q ss_pred ChhcC--CCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEe---cCCCHHHHHHHHHHHhcCCC
Q psy5052 1 YKKAG--LDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVM---KNFNDDEILDFVLLTRDRPI 75 (172)
Q Consensus 1 L~~aG--l~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~---~g~N~~ei~~l~~~a~~~g~ 75 (172)
|+++| ...+.|.+.|.++++.+.++++.+.++..+.++.+++++. .+.|.+.++ +|.+.+++.+.++|+++++.
T Consensus 260 m~~~g~~~~~l~lglQSgsd~iLk~m~R~~t~~~~~~~v~~lr~~~~-~i~i~~~~IvGfPgET~edf~~Tl~~i~~~~~ 338 (502)
T PRK14326 260 MAETPNVCPQLHMPLQSGSDRVLRAMRRSYRSERFLGILEKVRAAMP-DAAITTDIIVGFPGETEEDFQATLDVVREARF 338 (502)
T ss_pred HHhcCCcCCcEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCC-CCeEEEEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 35666 7889999999999999999877789999999999998743 344554443 78899999999999999988
Q ss_pred e-EEEEeeeeCCCCC
Q psy5052 76 D-VRFIEYMPFSGNQ 89 (172)
Q Consensus 76 ~-~~~i~~~p~g~~~ 89 (172)
+ +.++.|.|..+.+
T Consensus 339 ~~~~~f~~sp~pGT~ 353 (502)
T PRK14326 339 SSAFTFQYSKRPGTP 353 (502)
T ss_pred CEEEEEeecCCCCCh
Confidence 6 4556688887643
No 111
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=97.69 E-value=0.00074 Score=59.16 Aligned_cols=105 Identities=18% Similarity=0.187 Sum_probs=73.0
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEec---CCCHHHHHHHHHHHh---cCC
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMK---NFNDDEILDFVLLTR---DRP 74 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~---g~N~~ei~~l~~~a~---~~g 74 (172)
|+++|+++|.+.++|+++++.+.+.++.+.+++.++++.++++|+ . +++-+|. |.+.++..+.++.+. .++
T Consensus 212 L~~~G~~rVslGVQS~~d~VL~~inRght~~~v~~Ai~~lr~~G~-~--v~~~LM~GLPgqt~e~~~~t~~~l~~~~~l~ 288 (522)
T TIGR01211 212 MLKLGATRVELGVQTIYNDILERTKRGHTVRDVVEATRLLRDAGL-K--VVYHIMPGLPGSSFERDLEMFREIFEDPRFK 288 (522)
T ss_pred HHHcCCCEEEEECccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCC-e--EEEEeecCCCCCCHHHHHHHHHHHHhccCCC
Confidence 578999999999999999999999877899999999999999998 4 5555554 455555555555554 366
Q ss_pred Ce-EEEEeeeeCCCCC----CCCC--CCCCHHHHHHHHHHh
Q psy5052 75 ID-VRFIEYMPFSGNQ----WNNT--KIMPFSEMLTKIKEA 108 (172)
Q Consensus 75 ~~-~~~i~~~p~g~~~----~~~~--~~~~~~e~~~~l~~~ 108 (172)
.+ +++..+.+..+.. |... ..++.+|..+.+...
T Consensus 289 pD~Ikiypl~V~~gT~L~~~~~~G~y~p~t~ee~v~l~~~~ 329 (522)
T TIGR01211 289 PDMLKIYPTLVTRGTELYELWKRGEYKPYTTEEAVELIVEI 329 (522)
T ss_pred cCEEEEecceeeCCCHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 64 5666665554421 2211 245667766655443
No 112
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=97.64 E-value=0.00059 Score=55.75 Aligned_cols=76 Identities=16% Similarity=0.226 Sum_probs=63.8
Q ss_pred hcCCCeEEEeeeCCCHhhhcccc-CCCCHHHHHHHHHHHHHcCCCcEEEEE-EEecCCCHHHHHHHHHHHhcCCCeEEE
Q psy5052 3 KAGLDSINISLDTLKPDKYEFIT-RRKGWSRVLAGIDLAVQLGYDNLKVNV-VVMKNFNDDEILDFVLLTRDRPIDVRF 79 (172)
Q Consensus 3 ~aGl~~v~iSlds~~~e~~~~i~-g~~~~~~vl~~i~~~~~~g~~~v~in~-v~~~g~N~~ei~~l~~~a~~~g~~~~~ 79 (172)
+-+.-.|.||+.+.+++..+.+- +..+.+.-+++++.+.++|+ ++.+.+ .++++.|++|++.+++-+.+-|+...+
T Consensus 140 ~~~~v~V~~Sitt~d~~l~k~~EP~apsp~~Ri~al~~l~eaGi-~~~v~v~PIiP~~~d~e~e~~l~~~~~ag~~~v~ 217 (297)
T COG1533 140 ERGKVRVAVSITTLDEELAKILEPRAPSPEERLEALKELSEAGI-PVGLFVAPIIPGLNDEELERILEAAAEAGARVVV 217 (297)
T ss_pred hccceEEEEEeecCcHHHHHhcCCCCcCHHHHHHHHHHHHHCCC-eEEEEEecccCCCChHHHHHHHHHHHHcCCCeeE
Confidence 34445799999999988888876 34589999999999999999 888886 788999999999999999988886433
No 113
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=97.64 E-value=0.0011 Score=58.02 Aligned_cols=99 Identities=15% Similarity=0.216 Sum_probs=75.3
Q ss_pred ChhcC--CCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEE---ecCCCHHHHHHHHHHHhcCCC
Q psy5052 1 YKKAG--LDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVV---MKNFNDDEILDFVLLTRDRPI 75 (172)
Q Consensus 1 L~~aG--l~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~---~~g~N~~ei~~l~~~a~~~g~ 75 (172)
|+++| +..+.|.+.|.++++-+.+.+..+.++.++.++.+++++. .+.+.+-+ .+|.+++++.+.++|+++++.
T Consensus 315 m~~~g~~~~~l~lgvQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~p-~i~i~tdiIvGfPgET~edf~~Tl~~v~~l~~ 393 (509)
T PRK14327 315 LAKGGNLVEHIHLPVQSGSTEVLKIMARKYTRESYLELVRKIKEAIP-NVALTTDIIVGFPNETDEQFEETLSLYREVGF 393 (509)
T ss_pred HHhcCCccceEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCC-CcEEeeeEEEeCCCCCHHHHHHHHHHHHHcCC
Confidence 35677 6789999999999999988877788999999999999843 45555433 488899999999999999998
Q ss_pred e-EEEEeeeeCCCCC-CCCCCCCCHHH
Q psy5052 76 D-VRFIEYMPFSGNQ-WNNTKIMPFSE 100 (172)
Q Consensus 76 ~-~~~i~~~p~g~~~-~~~~~~~~~~e 100 (172)
+ +.+..|.|..+.+ +.....++.+.
T Consensus 394 d~~~~f~ysprpGT~a~~~~~~vp~~v 420 (509)
T PRK14327 394 DHAYTFIYSPREGTPAAKMKDNVPMEV 420 (509)
T ss_pred CeEEEeeeeCCCCCchHhCcCCCCHHH
Confidence 6 4556677877643 23334455543
No 114
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=97.64 E-value=0.00083 Score=57.66 Aligned_cols=97 Identities=8% Similarity=0.065 Sum_probs=72.7
Q ss_pred hhcC--CCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEE---ecCCCHHHHHHHHHHHhcCCCe
Q psy5052 2 KKAG--LDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVV---MKNFNDDEILDFVLLTRDRPID 76 (172)
Q Consensus 2 ~~aG--l~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~---~~g~N~~ei~~l~~~a~~~g~~ 76 (172)
+++| +.++.+.+.|.++++-+.+.++.+.++++++++.++++.- .+.+.+.+ .+|.+.+++.+.++|+++++.+
T Consensus 251 ~~~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~-~i~i~~d~IvG~PgET~ed~~~tl~~i~~l~~~ 329 (439)
T PRK14328 251 ADCDKVCEHIHLPVQSGSNRILKKMNRHYTREYYLELVEKIKSNIP-DVAITTDIIVGFPGETEEDFEETLDLVKEVRYD 329 (439)
T ss_pred HhCCCcCceeeeCCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHhCC-CCEEEEEEEEECCCCCHHHHHHHHHHHHhcCCC
Confidence 4554 8899999999999999988776788999999999998732 34444333 4778899999999999999875
Q ss_pred -EEEEeeeeCCCCC-CCCCCCCCHH
Q psy5052 77 -VRFIEYMPFSGNQ-WNNTKIMPFS 99 (172)
Q Consensus 77 -~~~i~~~p~g~~~-~~~~~~~~~~ 99 (172)
+.+..|.|..+.+ +.....++.+
T Consensus 330 ~~~~~~~sp~pGT~~~~~~~~v~~~ 354 (439)
T PRK14328 330 SAFTFIYSKRKGTPAAKMEDQVPED 354 (439)
T ss_pred cccceEecCCCCChhhhCCCCCCHH
Confidence 5777788887643 2223345544
No 115
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=97.62 E-value=0.00084 Score=53.26 Aligned_cols=101 Identities=15% Similarity=0.157 Sum_probs=71.6
Q ss_pred ChhcCCCeEEEeeeCCCHhhhcccc-CC---CCHHHHHHHHHHHHHcCCCcEEEEEEEecC--CCHHHHHHHHHHHhcCC
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFIT-RR---KGWSRVLAGIDLAVQLGYDNLKVNVVVMKN--FNDDEILDFVLLTRDRP 74 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~-g~---~~~~~vl~~i~~~~~~g~~~v~in~v~~~g--~N~~ei~~l~~~a~~~g 74 (172)
++++|++.|.|++++.+ .|++.. ++ +.++.++++++.+++.|+ .+.+++.-.-+ .|.+++.++++.+.+.|
T Consensus 83 a~~~g~~~i~i~~~~s~--~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g 159 (265)
T cd03174 83 ALEAGVDEVRIFDSASE--THSRKNLNKSREEDLENAEEAIEAAKEAGL-EVEGSLEDAFGCKTDPEYVLEVAKALEEAG 159 (265)
T ss_pred HHhCCcCEEEEEEecCH--HHHHHHhCCCHHHHHHHHHHHHHHHHHCCC-eEEEEEEeecCCCCCHHHHHHHHHHHHHcC
Confidence 36789999999998764 666652 22 369999999999999999 89999844444 79999999999999999
Q ss_pred CeEEEEeeeeCCCCCCCCCCCCCHHHHHHHHHHhCC
Q psy5052 75 IDVRFIEYMPFSGNQWNNTKIMPFSEMLTKIKEAHP 110 (172)
Q Consensus 75 ~~~~~i~~~p~g~~~~~~~~~~~~~e~~~~l~~~~~ 110 (172)
++ .+.+.++-+. ..+....++++.+++.++
T Consensus 160 ~~--~i~l~Dt~G~----~~P~~v~~li~~l~~~~~ 189 (265)
T cd03174 160 AD--EISLKDTVGL----ATPEEVAELVKALREALP 189 (265)
T ss_pred CC--EEEechhcCC----cCHHHHHHHHHHHHHhCC
Confidence 86 3334333221 112234455666666654
No 116
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=97.62 E-value=0.0012 Score=57.06 Aligned_cols=95 Identities=12% Similarity=0.098 Sum_probs=73.1
Q ss_pred CCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEE---ecCCCHHHHHHHHHHHhcCCCe-EEEE
Q psy5052 5 GLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVV---MKNFNDDEILDFVLLTRDRPID-VRFI 80 (172)
Q Consensus 5 Gl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~---~~g~N~~ei~~l~~~a~~~g~~-~~~i 80 (172)
|+..+.|.+.|.++++-+.+.++.+.++.+++++.+++++- .+.|++.+ .+|.+.+++.+.++|+++++.+ +.+.
T Consensus 282 g~~~i~iglQSgsd~vLk~m~R~~t~~~~~~~i~~ir~~~~-~~~i~~d~IvGfPgET~edf~~tl~~i~~l~~~~~~v~ 360 (467)
T PRK14329 282 ICKHIHLPVQSGSDRILKLMNRKYTREWYLDRIDAIRRIIP-DCGISTDMIAGFPTETEEDHQDTLSLMEEVGYDFAFMF 360 (467)
T ss_pred CCCeEEeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCC-CCEEEEeEEEeCCCCCHHHHHHHHHHHHhhCCCeEeee
Confidence 79999999999999999988776778999999999998753 34554433 3888999999999999999975 4667
Q ss_pred eeeeCCCCC-C-CCCCCCCHHH
Q psy5052 81 EYMPFSGNQ-W-NNTKIMPFSE 100 (172)
Q Consensus 81 ~~~p~g~~~-~-~~~~~~~~~e 100 (172)
.|.|..+.+ + ..+..++.++
T Consensus 361 ~~sp~pGT~~~~~~~~~v~~~~ 382 (467)
T PRK14329 361 KYSERPGTYAARKLEDDVPEEV 382 (467)
T ss_pred EecCCCCChhhhhCCCCCCHHH
Confidence 788887753 2 1233455554
No 117
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=97.60 E-value=0.00097 Score=57.41 Aligned_cols=96 Identities=9% Similarity=0.050 Sum_probs=74.5
Q ss_pred CCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEe---cCCCHHHHHHHHHHHhcCCCe-EEEE
Q psy5052 5 GLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVM---KNFNDDEILDFVLLTRDRPID-VRFI 80 (172)
Q Consensus 5 Gl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~---~g~N~~ei~~l~~~a~~~g~~-~~~i 80 (172)
|+..+.|.+.|.++++-+.+.+..+.++.++.++.+++++. .+.+.+.++ +|.+.+++.+.++|+++++.+ +.+.
T Consensus 264 ~~~~l~igiQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~p-~i~i~~d~IvGfPgET~edf~~tl~~l~~~~~~~~~~~ 342 (448)
T PRK14333 264 VCEHFHIPFQSGDNEILKAMARGYTHEKYRRIIDKIREYMP-DASISADAIVGFPGETEAQFENTLKLVEEIGFDQLNTA 342 (448)
T ss_pred ccccccCCCccCCHHHHHhcCCCCCHHHHHHHHHHHHHhCC-CcEEEeeEEEECCCCCHHHHHHHHHHHHHcCCCEEeee
Confidence 57889999999999999998877789999999999999843 345554443 788999999999999999985 5777
Q ss_pred eeeeCCCCC-CCCCCCCCHHHH
Q psy5052 81 EYMPFSGNQ-WNNTKIMPFSEM 101 (172)
Q Consensus 81 ~~~p~g~~~-~~~~~~~~~~e~ 101 (172)
.|.|..+.. +.....++.+..
T Consensus 343 ~~sp~pGT~~~~~~~~v~~~~~ 364 (448)
T PRK14333 343 AYSPRPGTPAALWDNQLSEEVK 364 (448)
T ss_pred eeecCCCCchhhCCCCCCHHHH
Confidence 888887654 222344665543
No 118
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=97.59 E-value=0.002 Score=55.07 Aligned_cols=83 Identities=12% Similarity=0.165 Sum_probs=68.4
Q ss_pred CCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHc--CCCcEEEEEE-EecCCCHHHHHHHHHHHhcCCCe-EEEEe
Q psy5052 6 LDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQL--GYDNLKVNVV-VMKNFNDDEILDFVLLTRDRPID-VRFIE 81 (172)
Q Consensus 6 l~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~--g~~~v~in~v-~~~g~N~~ei~~l~~~a~~~g~~-~~~i~ 81 (172)
...+.+++.|.+++..+.+.++...++..++++.++++ |+ .+...+. =.+|.+.+++.+.++|+++++.+ +.+..
T Consensus 243 ~~~l~iglQSgsd~iL~~m~R~~~~~~~~~~i~~i~~~~~~i-~i~~~~IvG~PgET~ed~~~t~~~~~~~~~~~i~~~~ 321 (420)
T TIGR01578 243 YKFLHLPVQSGSDSVLKEMKREYTVSDFEDIVDKFRERFPDL-TLSTDIIVGFPTETDDDFEETMELLRKYRPEKINITK 321 (420)
T ss_pred cCceEeCCccCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC-EEEeeEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEEE
Confidence 56889999999999999988777899999999999988 55 4444433 24888999999999999999975 67788
Q ss_pred eeeCCCCC
Q psy5052 82 YMPFSGNQ 89 (172)
Q Consensus 82 ~~p~g~~~ 89 (172)
|.|..+.+
T Consensus 322 ~~p~pGT~ 329 (420)
T TIGR01578 322 FSPRPGTP 329 (420)
T ss_pred eeCCCCCc
Confidence 89988754
No 119
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=97.59 E-value=0.0016 Score=56.14 Aligned_cols=97 Identities=8% Similarity=-0.001 Sum_probs=73.3
Q ss_pred cCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEe---cCCCHHHHHHHHHHHhcCCCeE-EE
Q psy5052 4 AGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVM---KNFNDDEILDFVLLTRDRPIDV-RF 79 (172)
Q Consensus 4 aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~---~g~N~~ei~~l~~~a~~~g~~~-~~ 79 (172)
.|...+.|.+.|.+++.-+.+.++.+.++..++++.+++++- .+.+.+.++ +|.+.+++.+.++|+++++.+. .+
T Consensus 257 ~~~~~l~iglQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~~-~i~i~~d~IvG~PgET~ed~~~tl~~l~~~~~~~~~~ 335 (446)
T PRK14337 257 NLCPRLHLPLQSGSDRILKAMGRKYDMARYLDIVTDLRAARP-DIALTTDLIVGFPGETEEDFEQTLEAMRTVGFASSFS 335 (446)
T ss_pred cccCeEEECCCCCCHHHHHhCCCCCCHHHHHHHHHHHHHhCC-CCeEEEeEEEECCCCCHHHHHHHHHHHHhcCCCeeEE
Confidence 357899999999999999988776789999999999998842 345554443 7788999999999999999864 55
Q ss_pred EeeeeCCCCC-CCCCCCCCHHHH
Q psy5052 80 IEYMPFSGNQ-WNNTKIMPFSEM 101 (172)
Q Consensus 80 i~~~p~g~~~-~~~~~~~~~~e~ 101 (172)
+.|.|..+.+ +..+..++.+..
T Consensus 336 f~ysp~pgT~a~~~~~~v~~~vk 358 (446)
T PRK14337 336 FCYSDRPGTRAEMLPGKVPEEVK 358 (446)
T ss_pred EecCCCCCCccccCCCCCCHHHH
Confidence 5677877643 333344555543
No 120
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=97.56 E-value=0.001 Score=57.61 Aligned_cols=103 Identities=17% Similarity=0.317 Sum_probs=72.7
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccC--C-CCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCH--HHHHHHHHHHhcC--
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITR--R-KGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFND--DEILDFVLLTRDR-- 73 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g--~-~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~--~ei~~l~~~a~~~-- 73 (172)
||++|++++.+-..+-++++|.++.. + .+|+.-+++++.+.++|++.|.+-. +=|..+ .|..+++..++.+
T Consensus 186 LkeaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~G~--L~GLge~~~E~~~l~~hl~~L~~ 263 (469)
T PRK09613 186 LKEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGIGV--LFGLYDYKFEVLGLLMHAEHLEE 263 (469)
T ss_pred HHHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCeEE--EEcCCCCHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999863 2 4799999999999999993255543 334443 4655666666555
Q ss_pred --CCe---EEEEeeeeCCCCCC-CCCCCCCHHHHHHHH
Q psy5052 74 --PID---VRFIEYMPFSGNQW-NNTKIMPFSEMLTKI 105 (172)
Q Consensus 74 --g~~---~~~i~~~p~g~~~~-~~~~~~~~~e~~~~l 105 (172)
|+. +.+-.+.|..+.+. ..+..++.+++++.+
T Consensus 264 ~~gvgp~tIsvprl~P~~Gtpl~~~~~~vsd~e~lrii 301 (469)
T PRK09613 264 RFGVGPHTISVPRLRPADGSDLENFPYLVSDEDFKKIV 301 (469)
T ss_pred hhCCCCccccccceecCCCCCcccCCCCCCHHHHHHHH
Confidence 432 34445678766544 333457888876664
No 121
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=97.53 E-value=0.0017 Score=55.53 Aligned_cols=97 Identities=11% Similarity=0.100 Sum_probs=74.7
Q ss_pred cCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHc--CCCcEEEEEEE-ecCCCHHHHHHHHHHHhcCCCe-EEE
Q psy5052 4 AGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQL--GYDNLKVNVVV-MKNFNDDEILDFVLLTRDRPID-VRF 79 (172)
Q Consensus 4 aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~--g~~~v~in~v~-~~g~N~~ei~~l~~~a~~~g~~-~~~ 79 (172)
.++..+.+.++|.++++-+.++++...++..++++.++++ |+ .+..++.+ .+|.+.+++.+.++|+++.+.+ +.+
T Consensus 232 ~~~~~l~lglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~pgi-~i~~d~IvGfPGET~edf~~tl~fi~~~~~~~~~v 310 (418)
T PRK14336 232 KVCRSLSLPVQAGDDTILAAMRRGYTNQQYRELVERLKTAMPDI-SLQTDLIVGFPSETEEQFNQSYKLMADIGYDAIHV 310 (418)
T ss_pred ccCCceecCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhhCCCC-EEEEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEe
Confidence 3588999999999999999988777899999999999998 77 56555433 4888999999999999999875 466
Q ss_pred EeeeeCCCCCC--CCCCCCCHHHH
Q psy5052 80 IEYMPFSGNQW--NNTKIMPFSEM 101 (172)
Q Consensus 80 i~~~p~g~~~~--~~~~~~~~~e~ 101 (172)
..|.|..+.+. ..+..++.+..
T Consensus 311 ~~ysp~pGT~a~~~~~~~v~~~~k 334 (418)
T PRK14336 311 AAYSPRPQTVAARDMADDVPVIEK 334 (418)
T ss_pred eecCCCCCChhHhhCccCCCHHHH
Confidence 67888776432 12344655443
No 122
>PRK12928 lipoyl synthase; Provisional
Probab=97.47 E-value=0.0011 Score=54.11 Aligned_cols=101 Identities=19% Similarity=0.204 Sum_probs=72.4
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEec--CCCHHHHHHHHHHHhcCCCe-E
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMK--NFNDDEILDFVLLTRDRPID-V 77 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~--g~N~~ei~~l~~~a~~~g~~-~ 77 (172)
|++||.+.++.-+.+. ++.++++++..++++.++.++.+++.|- .+.+++.+|= |.+.+|+.+.++++++++++ +
T Consensus 159 l~~Ag~~i~~hnlEt~-~~vl~~m~r~~t~e~~le~l~~ak~~gp-~i~~~s~iIvG~GET~ed~~etl~~Lrel~~d~v 236 (290)
T PRK12928 159 VLAAKPDVFNHNLETV-PRLQKAVRRGADYQRSLDLLARAKELAP-DIPTKSGLMLGLGETEDEVIETLRDLRAVGCDRL 236 (290)
T ss_pred HHHcCchhhcccCcCc-HHHHHHhCCCCCHHHHHHHHHHHHHhCC-CceecccEEEeCCCCHHHHHHHHHHHHhcCCCEE
Confidence 4577876666445554 7889999877799999999999999982 3455554444 45778999999999999996 4
Q ss_pred EEEeee-eCCCCCCCCCCCCCHHHHHHH
Q psy5052 78 RFIEYM-PFSGNQWNNTKIMPFSEMLTK 104 (172)
Q Consensus 78 ~~i~~~-p~g~~~~~~~~~~~~~e~~~~ 104 (172)
.+..|+ |... .+.-..++++++|.++
T Consensus 237 ~i~~Yl~p~~~-~~~v~~~~~~~~f~~~ 263 (290)
T PRK12928 237 TIGQYLRPSLA-HLPVQRYWTPEEFEAL 263 (290)
T ss_pred EEEcCCCCCcc-CCceeeccCHHHHHHH
Confidence 555554 4433 3444567888887554
No 123
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=97.39 E-value=0.0017 Score=55.50 Aligned_cols=83 Identities=11% Similarity=0.251 Sum_probs=69.7
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEE-EecCCCHHHHHHHHHHHhcCCCe-EE
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVV-VMKNFNDDEILDFVLLTRDRPID-VR 78 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v-~~~g~N~~ei~~l~~~a~~~g~~-~~ 78 (172)
|+++|+.||.+-+.|+++++-+.+.+..+.+.+.++++.+++.|+..|.+-.. -++++|.+++.+-++.+.+++.+ +.
T Consensus 143 l~~~GvNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIyglP~QT~~~~~~~l~~a~~l~pdhis 222 (416)
T COG0635 143 LKEAGVNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYGLPGQTLESLKEDLEQALELGPDHLS 222 (416)
T ss_pred HHHcCCCEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEE
Confidence 57899999999999999999999988889999999999999999865555532 25889999999999999999974 55
Q ss_pred EEeee
Q psy5052 79 FIEYM 83 (172)
Q Consensus 79 ~i~~~ 83 (172)
+..+.
T Consensus 223 ~y~L~ 227 (416)
T COG0635 223 LYSLA 227 (416)
T ss_pred Eeeee
Confidence 54443
No 124
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=97.37 E-value=0.0016 Score=53.91 Aligned_cols=103 Identities=16% Similarity=0.161 Sum_probs=67.1
Q ss_pred ChhcCCCeEEEeeeCCCHhhhcccc---CCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCC---
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFIT---RRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRP--- 74 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~---g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g--- 74 (172)
|+++|+. +.+++++.+++.++.+. ....+++.++.++.+++.|+ ++...+.+--|.+..++.+.+++++++.
T Consensus 121 Lk~ag~~-l~~~~et~~e~l~~~v~~~~~~~~~~~~l~~i~~a~~~Gi-~~~~~~i~G~gEt~ed~~~~l~~l~~l~~~~ 198 (336)
T PRK06245 121 LKEVNAS-MGLMLEQTSPRLLNTVHRGSPGKDPELRLETIENAGKLKI-PFTTGILIGIGETWEDRAESLEAIAELHERY 198 (336)
T ss_pred HHHhCCC-CCCCccccchhhHHhhccCCCCCCHHHHHHHHHHHHHcCC-ceeeeeeeECCCCHHHHHHHHHHHHHHHHhh
Confidence 4677753 67889999998876552 23478999999999999999 6653332222557777777655655543
Q ss_pred --C-eEEEEeeeeCCCCCCCCCCCCCHHHHHHHH
Q psy5052 75 --I-DVRFIEYMPFSGNQWNNTKIMPFSEMLTKI 105 (172)
Q Consensus 75 --~-~~~~i~~~p~g~~~~~~~~~~~~~e~~~~l 105 (172)
+ .+.+..|+|.++.+.......+.+++++.+
T Consensus 199 gg~~~~~~~~f~P~~~T~~~~~~~~s~~e~l~~i 232 (336)
T PRK06245 199 GHIQEVIIQNFSPKPGIPMENHPEPSLEEMLRVV 232 (336)
T ss_pred CCCcEEecCCCcCCCCCCcccCCCcCHHHHHHHH
Confidence 3 345567788876543222346677766643
No 125
>PRK08445 hypothetical protein; Provisional
Probab=97.21 E-value=0.0026 Score=53.12 Aligned_cols=75 Identities=21% Similarity=0.199 Sum_probs=58.7
Q ss_pred ChhcCCCeEE-EeeeCCCHhhhccccC-CCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCe
Q psy5052 1 YKKAGLDSIN-ISLDTLKPDKYEFITR-RKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPID 76 (172)
Q Consensus 1 L~~aGl~~v~-iSlds~~~e~~~~i~g-~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~ 76 (172)
||+||++++. +.+.++++++.+.+.. .-+-++-++.++.++++|+ ++.-.+.+=-|.+.++..+.+.+.++++.+
T Consensus 150 LkeAGl~~~~g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~a~~~Gi-~~~sg~i~G~~Et~edr~~~l~~lreLq~~ 226 (348)
T PRK08445 150 LQAKGLSSIPGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAHLIGM-KSTATMMFGTVENDEEIIEHWERIRDLQDE 226 (348)
T ss_pred HHHcCCCCCCCCceeeCCHHHHHhhCCCCCCHHHHHHHHHHHHHcCC-eeeeEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 6899999996 8999999999999854 3467777999999999999 555554443345667877888888877764
No 126
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=97.20 E-value=0.0022 Score=52.84 Aligned_cols=103 Identities=17% Similarity=0.163 Sum_probs=69.1
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccC----CCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCC--
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITR----RKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRP-- 74 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g----~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g-- 74 (172)
|+++|++ +.+++++.++..+..++. ...+++.++.++.+++.|+ ++...+.+=-|.+..++.+.+.++++++
T Consensus 116 Lk~aG~~-~~~~~Et~~~~l~~~~~~~~~p~k~~~~~l~~i~~a~~~Gi-~~~s~~i~G~gEt~ed~~~~l~~lr~Lq~~ 193 (322)
T TIGR03550 116 LKPVNAS-MGLMLETTSERLCKGEAHYGSPGKDPAVRLETIEDAGRLKI-PFTTGILIGIGETREERAESLLAIRELHER 193 (322)
T ss_pred HHhhCCC-CCcchhhhccccccccccCCCCCCCHHHHHHHHHHHHHcCC-CccceeeEeCCCCHHHHHHHHHHHHHHHHH
Confidence 5788875 588888888775554432 2368889999999999999 6655554434567778888888887766
Q ss_pred ---C-eEEEEeeeeCCCCCCCCCCCCCHHHHHHHH
Q psy5052 75 ---I-DVRFIEYMPFSGNQWNNTKIMPFSEMLTKI 105 (172)
Q Consensus 75 ---~-~~~~i~~~p~g~~~~~~~~~~~~~e~~~~l 105 (172)
+ .+.+..|.|..+.+.......+..+.++.+
T Consensus 194 ~~g~~~~i~~~f~P~~gTpl~~~~~~s~~e~lr~i 228 (322)
T TIGR03550 194 YGHIQEVIVQNFRAKPGTPMENHPEPSLEEMLRTV 228 (322)
T ss_pred cCCCeEEecCccccCCCCCccCCCCCCHHHHHHHH
Confidence 4 333445677744432223457777776653
No 127
>PRK08444 hypothetical protein; Provisional
Probab=97.20 E-value=0.003 Score=52.88 Aligned_cols=104 Identities=19% Similarity=0.173 Sum_probs=70.6
Q ss_pred ChhcCCCeEEE-eeeCCCHhhhccccCCC-CHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCe-E
Q psy5052 1 YKKAGLDSINI-SLDTLKPDKYEFITRRK-GWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPID-V 77 (172)
Q Consensus 1 L~~aGl~~v~i-Slds~~~e~~~~i~g~~-~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~-~ 77 (172)
|++||++++.- +..-++++++.+|.... .-++.++-++.++++|+ ++.-.+.+=-|.+..|..+.+...++++.+ .
T Consensus 157 LkeAGl~~~~g~~aEi~~~~vr~~I~p~k~~~~~~~~i~~~a~~~Gi-~~~sg~l~G~gEt~edrv~hl~~Lr~Lq~~t~ 235 (353)
T PRK08444 157 MLEYGVDSMPGGGAEIFDEEVRKKICKGKVSSERWLEIHKYWHKKGK-MSNATMLFGHIENREHRIDHMLRLRDLQDKTG 235 (353)
T ss_pred HHHhCcccCCCCCchhcCHHHHhhhCCCCCCHHHHHHHHHHHHHcCC-CccceeEEecCCCHHHHHHHHHHHHHhccccC
Confidence 68999997765 45566888889997544 56888888899999999 564333332345777877888888888875 3
Q ss_pred EEEeeeeC----CCCCCCCCCCCCHHHHHHHH
Q psy5052 78 RFIEYMPF----SGNQWNNTKIMPFSEMLTKI 105 (172)
Q Consensus 78 ~~i~~~p~----g~~~~~~~~~~~~~e~~~~l 105 (172)
-|.+|+|. .+.+.......+..|.++.+
T Consensus 236 gf~~fIp~~f~~~~t~l~~~~~~~~~e~Lr~i 267 (353)
T PRK08444 236 GFNAFIPLVYQRENNYLKVEKFPSSQEILKTI 267 (353)
T ss_pred CceEEEecccCCCCCcCCCCCCCCHHHHHHHH
Confidence 56667776 33332222347777766653
No 128
>PRK05926 hypothetical protein; Provisional
Probab=97.16 E-value=0.0013 Score=55.36 Aligned_cols=85 Identities=20% Similarity=0.185 Sum_probs=69.2
Q ss_pred ChhcCCCeEEE-eeeCCCHhhhccccC-CCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCe-E
Q psy5052 1 YKKAGLDSINI-SLDTLKPDKYEFITR-RKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPID-V 77 (172)
Q Consensus 1 L~~aGl~~v~i-Slds~~~e~~~~i~g-~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~-~ 77 (172)
||+||++++.- ..+.++++.++.+.. ..+.++-++.++.++++|+ ++.-.++.-.|.+.+|..+.+...++++.+ +
T Consensus 175 LkeAGl~~~~g~GaEi~~e~~r~~~~p~~~t~~e~l~~i~~a~~~Gi-~~~sgmi~G~gEt~edrv~~l~~Lr~Lq~~t~ 253 (370)
T PRK05926 175 LKIAGLDSIPGGGAEILVDEIRETLAPGRLSSQGFLEIHKTAHSLGI-PSNATMLCYHRETPEDIVTHMSKLRALQDKTS 253 (370)
T ss_pred HHHcCcCccCCCCchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCC-cccCceEEeCCCCHHHHHHHHHHHHhcCCccC
Confidence 68999998875 588889998888864 3368889999999999999 677776665778888888888888999985 4
Q ss_pred EEEeeeeCC
Q psy5052 78 RFIEYMPFS 86 (172)
Q Consensus 78 ~~i~~~p~g 86 (172)
-|.+|+|..
T Consensus 254 gf~~fIp~~ 262 (370)
T PRK05926 254 GFKNFILLK 262 (370)
T ss_pred CeeeeEecc
Confidence 777887753
No 129
>PRK07360 FO synthase subunit 2; Reviewed
Probab=97.16 E-value=0.0034 Score=52.82 Aligned_cols=85 Identities=19% Similarity=0.256 Sum_probs=62.1
Q ss_pred ChhcCCCeEE-EeeeCCCHhhhccccCC-CCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCe-E
Q psy5052 1 YKKAGLDSIN-ISLDTLKPDKYEFITRR-KGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPID-V 77 (172)
Q Consensus 1 L~~aGl~~v~-iSlds~~~e~~~~i~g~-~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~-~ 77 (172)
|++||++++. -|-..++++.+.++... -++++-++.++.++++|+ ++.-.+.+=-|.+.++..+.+.+.++++.+ .
T Consensus 169 LkeAGld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl-~~~sg~i~G~gEt~edrv~~l~~lr~l~~~~~ 247 (371)
T PRK07360 169 LKDAGLDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGL-PTTSTMMYGHVETPEHRIDHLLILREIQQETG 247 (371)
T ss_pred HHHcCCCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCC-CceeeEEeeCCCCHHHHHHHHHHHHHhchhhC
Confidence 6899999886 33344556666666543 378888999999999999 676555543467888888888888888875 4
Q ss_pred EEEeeeeCC
Q psy5052 78 RFIEYMPFS 86 (172)
Q Consensus 78 ~~i~~~p~g 86 (172)
.|..|+|+.
T Consensus 248 g~~~fIp~~ 256 (371)
T PRK07360 248 GITEFVPLP 256 (371)
T ss_pred CeeEEEecc
Confidence 666777754
No 130
>COG1032 Fe-S oxidoreductase [Energy production and conversion]
Probab=97.07 E-value=0.0071 Score=51.67 Aligned_cols=88 Identities=16% Similarity=0.317 Sum_probs=73.7
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHH-HHHHHHHcCCCcEEEEEEE-ecCCCHHHHHHH---HHHHhcCCC
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLA-GIDLAVQLGYDNLKVNVVV-MKNFNDDEILDF---VLLTRDRPI 75 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~-~i~~~~~~g~~~v~in~v~-~~g~N~~ei~~l---~~~a~~~g~ 75 (172)
++++|...+.+.+.|.+++..+.+.+....+.+++ +++.+.+.|+ .+.+.+++ .+|.+.+++... ++++++.|.
T Consensus 306 ~~~~g~~~~~iG~Esgs~~~l~~~~k~~~~~~~~~~a~~~~~~~~~-~~~~~~i~G~pget~ed~~~t~~~~~~~~~~~~ 384 (490)
T COG1032 306 LREAGLRRVYIGIESGSEELLKKINKGITTEEVLEEAVKIAKEHGL-RVKLYFIVGLPGETEEDVKETIELAKFIKKLGP 384 (490)
T ss_pred HhhCCCcceEEeccCCCHHHHHHHhCCCChHHHHHHHHHHHHhCCc-eeeEEEEEcCCCCCHHHHHHHHHHHHHHHHhCc
Confidence 36789999999999999999998887778999995 9999999998 67777655 688888887775 888999998
Q ss_pred e--EEEEeeeeCCCCC
Q psy5052 76 D--VRFIEYMPFSGNQ 89 (172)
Q Consensus 76 ~--~~~i~~~p~g~~~ 89 (172)
. +.+..++|.+...
T Consensus 385 ~~~~~~~~~~p~p~t~ 400 (490)
T COG1032 385 KLYVSPSPFVPLPGTP 400 (490)
T ss_pred cceEEEeeeeCCCCCc
Confidence 7 6777888888754
No 131
>PRK05481 lipoyl synthase; Provisional
Probab=96.97 E-value=0.017 Score=46.96 Aligned_cols=98 Identities=21% Similarity=0.272 Sum_probs=68.1
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHc--CCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCe-E
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQL--GYDNLKVNVVVMKNFNDDEILDFVLLTRDRPID-V 77 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~--g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~-~ 77 (172)
|+++|.+.+..-+.+ .++.+++++++.++++.++.++.++++ |+ .+.-.+.+=-|.+.+|+.+.++++++++++ +
T Consensus 151 l~~ag~~i~~~~~et-s~~vlk~m~r~~t~e~~le~i~~ar~~~pgi-~~~t~~IvGfGET~ed~~~tl~~lrel~~d~v 228 (289)
T PRK05481 151 VLDARPDVFNHNLET-VPRLYKRVRPGADYERSLELLKRAKELHPGI-PTKSGLMVGLGETDEEVLEVMDDLRAAGVDIL 228 (289)
T ss_pred HHhcCcceeeccccC-hHHHHHHhCCCCCHHHHHHHHHHHHHhCCCC-eEeeeeEEECCCCHHHHHHHHHHHHhcCCCEE
Confidence 356787766655555 368888888767999999999999999 87 555333321256778999999999999996 4
Q ss_pred EEEeeeeCCCC-CCCCCCCCCHHHH
Q psy5052 78 RFIEYMPFSGN-QWNNTKIMPFSEM 101 (172)
Q Consensus 78 ~~i~~~p~g~~-~~~~~~~~~~~e~ 101 (172)
.+..|.| ... .+..++....+.+
T Consensus 229 ~if~Ys~-pa~k~~~v~~~~k~~r~ 252 (289)
T PRK05481 229 TIGQYLQ-PSRKHLPVERYVTPEEF 252 (289)
T ss_pred EEEccCC-CccccCCCCCcCCHHHH
Confidence 5566776 222 2333445555544
No 132
>PRK05927 hypothetical protein; Provisional
Probab=96.27 E-value=0.029 Score=46.90 Aligned_cols=104 Identities=16% Similarity=0.185 Sum_probs=67.2
Q ss_pred ChhcCCCeEEE-eeeCCCHhhhccccCCC-CHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeE-
Q psy5052 1 YKKAGLDSINI-SLDTLKPDKYEFITRRK-GWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDV- 77 (172)
Q Consensus 1 L~~aGl~~v~i-Slds~~~e~~~~i~g~~-~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~- 77 (172)
|++||++++.= -+..++++.++.++... +.++-++.|+.+++.|+ ++.-.+.+=-|.+..+..+.+...++++-++
T Consensus 153 Lk~aGl~~l~g~~~Et~~~~~~~~~~p~k~~~~~rl~~i~~A~~lGi-~~~sg~l~G~gEt~e~ri~~l~~Lr~lqd~~~ 231 (350)
T PRK05927 153 LWDAGQRTIPGGGAEILSERVRKIISPKKMGPDGWIQFHKLAHRLGF-RSTATMMFGHVESPEDILLHLQTLRDAQDENP 231 (350)
T ss_pred HHHcCcccCCCCCchhCCHHHhhccCCCCCCHHHHHHHHHHHHHcCC-CcCceeEEeeCCCHHHHHHHHHHHHHhhHhhC
Confidence 68999986552 56667777777776433 46999999999999999 5554443323567777666666667666433
Q ss_pred EEEeeeeC----CCCCCC-CC-CCCCHHHHHHHH
Q psy5052 78 RFIEYMPF----SGNQWN-NT-KIMPFSEMLTKI 105 (172)
Q Consensus 78 ~~i~~~p~----g~~~~~-~~-~~~~~~e~~~~l 105 (172)
.|.+++|. ++.+.. .. ...+..+.++.+
T Consensus 232 gf~~fIp~~~~~~~tpl~~~~~~~~s~~e~Lr~i 265 (350)
T PRK05927 232 GFYSFIPWSYKPGNTALGRRVPHQASPELYYRIL 265 (350)
T ss_pred CeeeeeecCcCCCCCccccCCCCCCCHHHHHHHH
Confidence 56667775 122211 11 147788876664
No 133
>COG2516 Biotin synthase-related enzyme [General function prediction only]
Probab=96.23 E-value=0.034 Score=45.60 Aligned_cols=100 Identities=20% Similarity=0.377 Sum_probs=74.2
Q ss_pred hhcCCCeEEEeeeCCCHhhhccccC----CCCHHHHHHHHHHHHHc-CCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCe
Q psy5052 2 KKAGLDSINISLDTLKPDKYEFITR----RKGWSRVLAGIDLAVQL-GYDNLKVNVVVMKNFNDDEILDFVLLTRDRPID 76 (172)
Q Consensus 2 ~~aGl~~v~iSlds~~~e~~~~i~g----~~~~~~vl~~i~~~~~~-g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~ 76 (172)
+++|.+.+.|-+|.++++.|.+++. +.++++-++.++.+.++ |-.++.+-..+--|..|.++.+.+..+...|..
T Consensus 138 ~klg~d~l~V~~daa~~~~~e~v~~~s~s~~S~e~~~~~l~~~~~~~~k~rv~ihliVglGesD~~~ve~~~~v~~~g~~ 217 (339)
T COG2516 138 RKLGADYLGVAEDAANEELFEKVRKTSGSPHSWERYWEFLEKVAEAFGKGRVGIHLIVGLGESDKDIVETIKRVRKRGGI 217 (339)
T ss_pred HhcchhhhhHHHHhcCHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhccCCcceeEEeccCCchHHHHHHHHHHHhcCce
Confidence 4678899999999999999999943 24788888888888754 312566665555677888999999999999999
Q ss_pred EEEEeeeeCCCCCCCCCCCCCHHHH
Q psy5052 77 VRFIEYMPFSGNQWNNTKIMPFSEM 101 (172)
Q Consensus 77 ~~~i~~~p~g~~~~~~~~~~~~~e~ 101 (172)
+.+.-+-|............+.+-+
T Consensus 218 v~Lfaf~P~~gt~me~r~~~pve~Y 242 (339)
T COG2516 218 VSLFAFTPLKGTQMENRKPPPVERY 242 (339)
T ss_pred EEEEEecccccccccCCCCCcHHHH
Confidence 9888888876543222233444444
No 134
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=96.08 E-value=0.052 Score=46.66 Aligned_cols=85 Identities=13% Similarity=0.205 Sum_probs=60.0
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHH---HHHHHHHHHcCCCcEEEEEE-EecCCCHHHHHHHHHHHhcCCC-
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRV---LAGIDLAVQLGYDNLKVNVV-VMKNFNDDEILDFVLLTRDRPI- 75 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~v---l~~i~~~~~~g~~~v~in~v-~~~g~N~~ei~~l~~~a~~~g~- 75 (172)
|+++ ++++.|.+.|.++++-+.+.+...+..+ ++.++.+.+. +..+.+... =++|++.+++.+-++++.+++.
T Consensus 152 l~~~-vnrlsiGVQS~~d~vLk~~gR~h~~~~~~~~~~~l~~~~~~-~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~ 229 (433)
T PRK08629 152 LKGL-IDRLSIGVQSFNDDILKMVDRYEKFGSGQETFEKIMKAKGL-FPIINVDLIFNFPGQTDEVLQHDLDIAKRLDPR 229 (433)
T ss_pred HHHh-CCeEEEecCcCCHHHHHHcCCCCChhHHHHHHHHHHHHhcc-CCeEEEEEEccCCCCCHHHHHHHHHHHHhCCCC
Confidence 4667 9999999999999999988765555444 5555554443 323433332 2488899999999999999998
Q ss_pred eEEEEeeeeCCC
Q psy5052 76 DVRFIEYMPFSG 87 (172)
Q Consensus 76 ~~~~i~~~p~g~ 87 (172)
.+.+..+++...
T Consensus 230 ~is~y~L~~~~~ 241 (433)
T PRK08629 230 QITTYPLMKSHQ 241 (433)
T ss_pred EEEEccceeccC
Confidence 467766665443
No 135
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=95.97 E-value=0.023 Score=42.86 Aligned_cols=64 Identities=17% Similarity=0.241 Sum_probs=45.6
Q ss_pred eEEEeeeCCCHhhhccccCC--CCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHH-HHHHHhcCC
Q psy5052 8 SINISLDTLKPDKYEFITRR--KGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILD-FVLLTRDRP 74 (172)
Q Consensus 8 ~v~iSlds~~~e~~~~i~g~--~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~-l~~~a~~~g 74 (172)
-|.||+.+.+||.|.+|++. .-|+..+++++.+.+.|+ ++- ..++.++-.++..+ +.+-..+++
T Consensus 147 ~vRVsvKG~dpesF~kIT~asp~~F~~QL~aLr~L~~~g~-rf~--pA~~~~f~~Ed~~k~Lak~Lgehp 213 (228)
T COG5014 147 LVRVSVKGWDPESFEKITGASPEYFRYQLKALRHLHGKGH-RFW--PAVVYDFFREDGLKELAKRLGEHP 213 (228)
T ss_pred EEEEEecCCCHHHHHHHhcCChHHHHHHHHHHHHHHhcCc-eee--ehhhhccchhhhHHHHHHHhccCC
Confidence 47799999999999999974 359999999999999998 533 33445555555432 444333333
No 136
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=95.66 E-value=0.22 Score=40.33 Aligned_cols=98 Identities=12% Similarity=0.275 Sum_probs=69.1
Q ss_pred EEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEE-ecCCCHHHHHHHHHHHhcCCCe-EEEEeeeeCC
Q psy5052 9 INISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVV-MKNFNDDEILDFVLLTRDRPID-VRFIEYMPFS 86 (172)
Q Consensus 9 v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~-~~g~N~~ei~~l~~~a~~~g~~-~~~i~~~p~g 86 (172)
|-+.|.++..++-+.|++..+|+...++++.+++.|+ +|-..+.+ +||.+.++..+.++....+|++ +.+..+.=+-
T Consensus 146 vELGLQT~h~~Tlk~iNRgHd~~~y~dav~r~rkrgI-kvc~HiI~GLPgE~~~~mleTak~v~~~~v~GIKlH~Lhvvk 224 (312)
T COG1242 146 VELGLQTAHDKTLKRINRGHDFACYVDAVKRLRKRGI-KVCTHLINGLPGETRDEMLETAKIVAELGVDGIKLHPLHVVK 224 (312)
T ss_pred EEeccchhhHHHHHHHhcccchHHHHHHHHHHHHcCC-eEEEEEeeCCCCCCHHHHHHHHHHHHhcCCceEEEEEEEEec
Confidence 3466788999999999888899999999999999998 55554433 5777788888888888889885 4554432222
Q ss_pred CC----CCC--CCCCCCHHHHHHHHHH
Q psy5052 87 GN----QWN--NTKIMPFSEMLTKIKE 107 (172)
Q Consensus 87 ~~----~~~--~~~~~~~~e~~~~l~~ 107 (172)
+. .|. .=..++.+|..+.+-.
T Consensus 225 gT~m~k~Y~~G~l~~ls~eeYv~~~~d 251 (312)
T COG1242 225 GTPMEKMYEKGRLKFLSLEEYVELVCD 251 (312)
T ss_pred CChHHHHHHcCCceeccHHHHHHHHHH
Confidence 21 111 1246788887666544
No 137
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=95.24 E-value=0.34 Score=38.62 Aligned_cols=102 Identities=12% Similarity=0.164 Sum_probs=67.0
Q ss_pred hhcCCCeEEEeeeCCCHhhhccccC--CCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEEE
Q psy5052 2 KKAGLDSINISLDTLKPDKYEFITR--RKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRF 79 (172)
Q Consensus 2 ~~aGl~~v~iSlds~~~e~~~~i~g--~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~~ 79 (172)
.++|++.+++++..-+......+.. ...++.+.+.++.+++.|+ .|.+++.-....+.+.+.++++.+.+.|++.
T Consensus 79 ~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-- 155 (259)
T cd07939 79 LRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGL-FVSVGAEDASRADPDFLIEFAEVAQEAGADR-- 155 (259)
T ss_pred HhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC-eEEEeeccCCCCCHHHHHHHHHHHHHCCCCE--
Confidence 4689999999886544433344432 2357888899999999998 7888876554356778888998888888862
Q ss_pred EeeeeCCCCCCCCCCCCCHHHHHHHHHHhCC
Q psy5052 80 IEYMPFSGNQWNNTKIMPFSEMLTKIKEAHP 110 (172)
Q Consensus 80 i~~~p~g~~~~~~~~~~~~~e~~~~l~~~~~ 110 (172)
+.+..+-+. . .+....++...+++.++
T Consensus 156 i~l~DT~G~-~---~P~~v~~lv~~l~~~~~ 182 (259)
T cd07939 156 LRFADTVGI-L---DPFTTYELIRRLRAATD 182 (259)
T ss_pred EEeCCCCCC-C---CHHHHHHHHHHHHHhcC
Confidence 333322221 1 12234556666776664
No 138
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.14 E-value=0.3 Score=42.07 Aligned_cols=92 Identities=10% Similarity=0.144 Sum_probs=70.3
Q ss_pred CeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEe---cCCCHHHHHHHHHHHhcCCCe-EEEEee
Q psy5052 7 DSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVM---KNFNDDEILDFVLLTRDRPID-VRFIEY 82 (172)
Q Consensus 7 ~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~---~g~N~~ei~~l~~~a~~~g~~-~~~i~~ 82 (172)
..+.++|.|.++.+-+.++++.+-++.++-|+.++++- +.+.|.+-++ ||.++.+.++.++|.++.+.+ +..+.|
T Consensus 256 ~~lHlPvQsGsd~ILk~M~R~yt~e~~~~~i~k~R~~~-Pd~~i~tDiIVGFPgETeedFe~tl~lv~e~~fd~~~~F~Y 334 (437)
T COG0621 256 PHLHLPVQSGSDRILKRMKRGYTVEEYLEIIEKLRAAR-PDIAISTDIIVGFPGETEEDFEETLDLVEEVRFDRLHVFKY 334 (437)
T ss_pred ccccCccccCCHHHHHHhCCCcCHHHHHHHHHHHHHhC-CCceEeccEEEECCCCCHHHHHHHHHHHHHhCCCEEeeeec
Confidence 46789999999999998888778888899999998764 4678887554 777899999999999999985 455667
Q ss_pred eeCCCCC-CCCCCCCCHH
Q psy5052 83 MPFSGNQ-WNNTKIMPFS 99 (172)
Q Consensus 83 ~p~g~~~-~~~~~~~~~~ 99 (172)
-|-.+.+ ...+..++.+
T Consensus 335 SpRpGTpAa~~~~qvp~~ 352 (437)
T COG0621 335 SPRPGTPAALMPDQVPEE 352 (437)
T ss_pred CCCCCCccccCCCCCCHH
Confidence 7766543 2233455544
No 139
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=94.98 E-value=0.11 Score=44.78 Aligned_cols=106 Identities=19% Similarity=0.295 Sum_probs=74.8
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCC---CH-HHHHHHHHHHhcCCC-
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNF---ND-DEILDFVLLTRDRPI- 75 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~---N~-~ei~~l~~~a~~~g~- 75 (172)
|+..|+++|-+-+.|+..++..+..++.+.+.|.++-+.++++|+ +|.+.+|+|+ |. .|+..+.++...-..
T Consensus 204 mlkyG~TrVELGVQSiyd~Vl~~~~RGHtvedv~~a~rLlKd~Gf---Kv~~HiMpGLPgs~~erDl~~f~~~f~~p~f~ 280 (515)
T COG1243 204 MLKYGVTRVELGVQSIYDDVLERTKRGHTVEDVVEATRLLKDAGF---KVGYHIMPGLPGSDFERDLESFREIFEDPRFR 280 (515)
T ss_pred HHhcCCcEEEEeeeeHHHHHHHHhcCCccHHHHHHHHHHHHhcCc---EEEEEecCCCCCCChHHHHHHHHHHHhCCCCC
Confidence 467899999999999999998887666789999999999999998 5667777765 33 378888888776433
Q ss_pred -e-EEEEeeeeCCCC----CCCCC--CCCCHHHHHHHHHHhC
Q psy5052 76 -D-VRFIEYMPFSGN----QWNNT--KIMPFSEMLTKIKEAH 109 (172)
Q Consensus 76 -~-~~~i~~~p~g~~----~~~~~--~~~~~~e~~~~l~~~~ 109 (172)
+ +++-.-+=+.+. .|... ..++.+|..+.+...+
T Consensus 281 PDmlKIYPtLVi~gT~Ly~mwk~G~Ykpy~~EEaVeli~~i~ 322 (515)
T COG1243 281 PDMLKIYPTLVIEGTELYEMWKRGLYKPYTTEEAVELIVEIY 322 (515)
T ss_pred CCeEEEeeeEEECCchHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 2 233332222221 24332 3578888777766554
No 140
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=94.96 E-value=0.088 Score=43.38 Aligned_cols=65 Identities=22% Similarity=0.457 Sum_probs=51.8
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCe
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPID 76 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~ 76 (172)
|.+||||.|.+-.+ .| +....++.++++..+++.|. .|.+.+..+|| =.+.+..+++++.+.+++
T Consensus 130 L~eAGLDEIRfHp~--~~-------~~~~~e~~i~~l~~A~~~g~-dvG~EiPaipg-~e~~i~e~~~~~~~~~~~ 194 (353)
T COG2108 130 LAEAGLDEIRFHPP--RP-------GSKSSEKYIENLKIAKKYGM-DVGVEIPAIPG-EEEAILEFAKALDENGLD 194 (353)
T ss_pred HHhCCCCeEEecCC--Cc-------cccccHHHHHHHHHHHHhCc-cceeecCCCcc-hHHHHHHHHHHHHhcccc
Confidence 56889998887665 11 11257889999999999998 89999999995 445688899999998876
No 141
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=94.87 E-value=0.79 Score=36.83 Aligned_cols=76 Identities=16% Similarity=0.295 Sum_probs=52.1
Q ss_pred CCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEEEEeeeeCCCCCCCCCCCCCHHHHHHHHHH
Q psy5052 28 KGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRFIEYMPFSGNQWNNTKIMPFSEMLTKIKE 107 (172)
Q Consensus 28 ~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~~i~~~p~g~~~~~~~~~~~~~e~~~~l~~ 107 (172)
..++.+++.++.+++.|+ .|.++..-.-+.+.+.+.++++.+.+.|++. +.+..+.+. . .+....++.+.+++
T Consensus 106 ~~~~~~~~~i~~ak~~G~-~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~--i~l~DT~G~-~---~P~~v~~lv~~l~~ 178 (266)
T cd07944 106 HEFDEALPLIKAIKEKGY-EVFFNLMAISGYSDEELLELLELVNEIKPDV--FYIVDSFGS-M---YPEDIKRIISLLRS 178 (266)
T ss_pred ccHHHHHHHHHHHHHCCC-eEEEEEEeecCCCHHHHHHHHHHHHhCCCCE--EEEecCCCC-C---CHHHHHHHHHHHHH
Confidence 369999999999999998 7888876655578888999999999888862 333323221 1 12234455556665
Q ss_pred hCC
Q psy5052 108 AHP 110 (172)
Q Consensus 108 ~~~ 110 (172)
..+
T Consensus 179 ~~~ 181 (266)
T cd07944 179 NLD 181 (266)
T ss_pred hcC
Confidence 553
No 142
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=94.78 E-value=0.42 Score=40.36 Aligned_cols=74 Identities=14% Similarity=0.214 Sum_probs=55.6
Q ss_pred hhcCCCeEEEeeeCCCHhhhccccCC--CCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCe
Q psy5052 2 KKAGLDSINISLDTLKPDKYEFITRR--KGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPID 76 (172)
Q Consensus 2 ~~aGl~~v~iSlds~~~e~~~~i~g~--~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~ 76 (172)
.++|++.|.|++...+.....+++.. ..++.+.+.++.+++.|+ .|.++..-..-.+.+.+.++++.+.+.|++
T Consensus 85 ~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~-~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~ 160 (378)
T PRK11858 85 IDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGL-YVSFSAEDASRTDLDFLIEFAKAAEEAGAD 160 (378)
T ss_pred HhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC-eEEEEeccCCCCCHHHHHHHHHHHHhCCCC
Confidence 47899999999987665555555532 367888889999999998 788875332225667888999999999986
No 143
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=94.53 E-value=0.89 Score=36.47 Aligned_cols=102 Identities=8% Similarity=0.039 Sum_probs=65.2
Q ss_pred hhcCCCeEEEeeeCCCHhhhccccC--CCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEEE
Q psy5052 2 KKAGLDSINISLDTLKPDKYEFITR--RKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRF 79 (172)
Q Consensus 2 ~~aGl~~v~iSlds~~~e~~~~i~g--~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~~ 79 (172)
.++|++.|++.+-..+.-...++.. ...++.+.+.++.+++.|+ .|.++..-.-+.+.+++.++++.+.+.|++.
T Consensus 81 ~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~-~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~-- 157 (262)
T cd07948 81 VETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGI-EVRFSSEDSFRSDLVDLLRVYRAVDKLGVNR-- 157 (262)
T ss_pred HHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC-eEEEEEEeeCCCCHHHHHHHHHHHHHcCCCE--
Confidence 4689999998886544322222322 1257778888899999998 7888875443367788999999999999862
Q ss_pred EeeeeCCCCCCCCCCCCCHHHHHHHHHHhCC
Q psy5052 80 IEYMPFSGNQWNNTKIMPFSEMLTKIKEAHP 110 (172)
Q Consensus 80 i~~~p~g~~~~~~~~~~~~~e~~~~l~~~~~ 110 (172)
+.+-.+.+. . .+....++.+.+++.++
T Consensus 158 i~l~Dt~G~-~---~P~~v~~~~~~~~~~~~ 184 (262)
T cd07948 158 VGIADTVGI-A---TPRQVYELVRTLRGVVS 184 (262)
T ss_pred EEECCcCCC-C---CHHHHHHHHHHHHHhcC
Confidence 222222221 1 12235566677777654
No 144
>PRK09234 fbiC FO synthase; Reviewed
Probab=94.51 E-value=0.26 Score=45.90 Aligned_cols=84 Identities=17% Similarity=0.204 Sum_probs=55.6
Q ss_pred ChhcCCCeEEE-eeeCCCHhhhccccCC-CCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeE-
Q psy5052 1 YKKAGLDSINI-SLDTLKPDKYEFITRR-KGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDV- 77 (172)
Q Consensus 1 L~~aGl~~v~i-Slds~~~e~~~~i~g~-~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~- 77 (172)
|++|||+++.- +=.-++++++..+... -+.++=++.++.+++.|+ ++.-.+.+=-|.+..+..+.+.+.++++.+.
T Consensus 634 LkeAGLds~pgt~aeil~d~vr~~i~p~k~~~~~wle~i~~Ah~lGi-~~~stmm~G~~Et~edrv~hl~~LreLq~~tg 712 (843)
T PRK09234 634 LREAGLDTIPGTAAEILDDEVRWVLTKGKLPTAEWIEVVTTAHEVGL-RSSSTMMYGHVDTPRHWVAHLRVLRDIQDRTG 712 (843)
T ss_pred HHHhCcCccCCCchhhCCHHHHhhcCCCCCCHHHHHHHHHHHHHcCC-CcccceEEcCCCCHHHHHHHHHHHHhcCcccC
Confidence 68999997652 2222344455455532 256666899999999999 5554444434467778888999999988752
Q ss_pred EEEeeeeC
Q psy5052 78 RFIEYMPF 85 (172)
Q Consensus 78 ~~i~~~p~ 85 (172)
-|.+|+|.
T Consensus 713 Gf~~fIPl 720 (843)
T PRK09234 713 GFTEFVPL 720 (843)
T ss_pred Ceeeeeec
Confidence 45555554
No 145
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=94.46 E-value=0.61 Score=39.18 Aligned_cols=74 Identities=12% Similarity=0.125 Sum_probs=54.6
Q ss_pred hhcCCCeEEEeeeCCCHhhhccccCC--CCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCe
Q psy5052 2 KKAGLDSINISLDTLKPDKYEFITRR--KGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPID 76 (172)
Q Consensus 2 ~~aGl~~v~iSlds~~~e~~~~i~g~--~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~ 76 (172)
.++|++.|.|++-+.+.....+++.. ..++.+.+.++.+++.|+ .|.++..-..-.+.+.+.++++.+.+.|++
T Consensus 81 ~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~-~v~~~~eda~r~~~~~l~~~~~~~~~~g~~ 156 (363)
T TIGR02090 81 IDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGL-IVEFSAEDATRTDIDFLIKVFKRAEEAGAD 156 (363)
T ss_pred HHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-EEEEEEeecCCCCHHHHHHHHHHHHhCCCC
Confidence 57899999998876554333344421 368889999999999998 788776333225777888999999889986
No 146
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=94.45 E-value=0.52 Score=39.00 Aligned_cols=99 Identities=16% Similarity=0.237 Sum_probs=63.7
Q ss_pred eEEEeeeCCCHhhh-ccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCC--CHH-HHHHHHHHHh--cCCCeEEEEe
Q psy5052 8 SINISLDTLKPDKY-EFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNF--NDD-EILDFVLLTR--DRPIDVRFIE 81 (172)
Q Consensus 8 ~v~iSlds~~~e~~-~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~--N~~-ei~~l~~~a~--~~g~~~~~i~ 81 (172)
.|.|-|.+++.++. +.|..+-+|++-+++++.++++|+ .++.- ++++-. ... -|.+++.=+. +-+.+ -+.
T Consensus 166 EvaIGLETanD~ire~sINKGftF~df~~A~~~ir~~g~-~vktY-lllKP~FlSE~eAI~D~i~Si~~~~~~~d--~iS 241 (358)
T COG1244 166 EVAIGLETANDKIREDSINKGFTFEDFVRAAEIIRNYGA-KVKTY-LLLKPPFLSEKEAIEDVISSIVAAKPGTD--TIS 241 (358)
T ss_pred EEEEecccCcHHHHHHhhhcCCcHHHHHHHHHHHHHcCC-ceeEE-EEecccccChHHHHHHHHHHHHHhccCCC--eEE
Confidence 67899999998875 667766699999999999999998 57644 444422 333 2555555444 33343 344
Q ss_pred eeeCC--CC----------CCCCCCCCCHHHHHHHHHHhCC
Q psy5052 82 YMPFS--GN----------QWNNTKIMPFSEMLTKIKEAHP 110 (172)
Q Consensus 82 ~~p~g--~~----------~~~~~~~~~~~e~~~~l~~~~~ 110 (172)
+.|+. .+ .+.++-..+..|++....+..+
T Consensus 242 inptnVqKgTlvE~lw~~g~YRPPwLWSivEVL~~~~~~~~ 282 (358)
T COG1244 242 INPTNVQKGTLVEKLWRRGLYRPPWLWSIVEVLREAKKTGP 282 (358)
T ss_pred ecccccchhhHHHHHHHcCCCCCchHHHHHHHHHHHHhcCC
Confidence 55543 22 2334444677777777776665
No 147
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=94.37 E-value=0.41 Score=38.74 Aligned_cols=100 Identities=22% Similarity=0.309 Sum_probs=69.8
Q ss_pred hhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcC--CCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEEE
Q psy5052 2 KKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLG--YDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRF 79 (172)
Q Consensus 2 ~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g--~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~~ 79 (172)
.++|.+-+|=-+.++ |..|..+|.+..+++-|+-++.+++.+ + ..|-...+==|.+++||.+.++=.++.|+++--
T Consensus 169 ~~~~pdV~nHNvETV-prL~~~VRp~A~Y~~SL~~L~~~k~~~P~i-~TKSgiMlGLGEt~~Ev~e~m~DLr~~gvdilT 246 (306)
T COG0320 169 ADAGPDVFNHNVETV-PRLYPRVRPGATYERSLSLLERAKELGPDI-PTKSGLMVGLGETDEEVIEVMDDLRSAGVDILT 246 (306)
T ss_pred HhcCcchhhcccccc-hhcccccCCCCcHHHHHHHHHHHHHhCCCc-ccccceeeecCCcHHHHHHHHHHHHHcCCCEEE
Confidence 467777777666666 367888886568999999999999987 4 445444443456888988888888889998754
Q ss_pred E-eee-eCCCCCCCCCCCCCHHHHHHH
Q psy5052 80 I-EYM-PFSGNQWNNTKIMPFSEMLTK 104 (172)
Q Consensus 80 i-~~~-p~g~~~~~~~~~~~~~e~~~~ 104 (172)
| +|+ |... ......+++++||.++
T Consensus 247 iGQYlqPS~~-HlpV~ryv~PeeF~~~ 272 (306)
T COG0320 247 IGQYLQPSRK-HLPVQRYVTPEEFDEL 272 (306)
T ss_pred eccccCCccc-cCCceeccCHHHHHHH
Confidence 4 454 6543 2233457888887444
No 148
>PF13186 SPASM: Iron-sulfur cluster-binding domain
Probab=93.98 E-value=0.035 Score=33.92 Aligned_cols=16 Identities=31% Similarity=0.513 Sum_probs=13.8
Q ss_pred CCceeeccCCcEEecC
Q psy5052 149 CNRLRLMADGSLKVCL 164 (172)
Q Consensus 149 c~~~~i~~~G~v~pC~ 164 (172)
-+.+.|++||+|+||.
T Consensus 5 ~~~~~I~~dG~v~pC~ 20 (64)
T PF13186_consen 5 WNSLYIDPDGDVYPCC 20 (64)
T ss_pred CeEEEEeeCccEEeCC
Confidence 3468899999999994
No 149
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=93.87 E-value=1.1 Score=36.09 Aligned_cols=101 Identities=16% Similarity=0.132 Sum_probs=63.5
Q ss_pred hhcCCCeEEEeeeCCCHhhhccccCC--CCHHHHHHHHHHHHHcCCCcEEEEEEEe-------cCCCHHHHHHHHHHHhc
Q psy5052 2 KKAGLDSINISLDTLKPDKYEFITRR--KGWSRVLAGIDLAVQLGYDNLKVNVVVM-------KNFNDDEILDFVLLTRD 72 (172)
Q Consensus 2 ~~aGl~~v~iSlds~~~e~~~~i~g~--~~~~~vl~~i~~~~~~g~~~v~in~v~~-------~g~N~~ei~~l~~~a~~ 72 (172)
.++|++.+.+.+..-+.-...+++.. ..++.+.+.++.+++.|+ .+.++.... + .+.+.+.++++.+.+
T Consensus 83 ~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~-~v~~~i~~~f~~~~~~~-~~~~~~~~~~~~~~~ 160 (274)
T cd07938 83 LAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGL-RVRGYVSTAFGCPYEGE-VPPERVAEVAERLLD 160 (274)
T ss_pred HHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCC-eEEEEEEeEecCCCCCC-CCHHHHHHHHHHHHH
Confidence 36789999988876654333334332 358888999999999998 677664432 2 345667788888888
Q ss_pred CCCeEEEEeeeeCCCCCCCCCCCCCHHHHHHHHHHhCC
Q psy5052 73 RPIDVRFIEYMPFSGNQWNNTKIMPFSEMLTKIKEAHP 110 (172)
Q Consensus 73 ~g~~~~~i~~~p~g~~~~~~~~~~~~~e~~~~l~~~~~ 110 (172)
.|++. +.+-.+-+. . .+....++.+.+++.+|
T Consensus 161 ~Ga~~--i~l~DT~G~-~---~P~~v~~lv~~l~~~~~ 192 (274)
T cd07938 161 LGCDE--ISLGDTIGV-A---TPAQVRRLLEAVLERFP 192 (274)
T ss_pred cCCCE--EEECCCCCc-c---CHHHHHHHHHHHHHHCC
Confidence 89862 333222221 1 12335556667777665
No 150
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=93.85 E-value=0.19 Score=39.28 Aligned_cols=103 Identities=20% Similarity=0.317 Sum_probs=67.2
Q ss_pred hhcCCCeEEEeeeCCCHhhhccccC--CCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEEE
Q psy5052 2 KKAGLDSINISLDTLKPDKYEFITR--RKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRF 79 (172)
Q Consensus 2 ~~aGl~~v~iSlds~~~e~~~~i~g--~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~~ 79 (172)
+++|++.+.+.+..-+.-....++. ...++.+.+.++.+++.|+ .+.+++.-....+.+++.++++.+.+.|++.
T Consensus 77 ~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-- 153 (237)
T PF00682_consen 77 KEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGY-EVAFGCEDASRTDPEELLELAEALAEAGADI-- 153 (237)
T ss_dssp HHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTS-EEEEEETTTGGSSHHHHHHHHHHHHHHT-SE--
T ss_pred HhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCC-ceEeCccccccccHHHHHHHHHHHHHcCCeE--
Confidence 4689999998877554333333322 1258888889999999998 7888765433367778889999999999873
Q ss_pred EeeeeCCCCCCCCCCCCCHHHHHHHHHHhCCC
Q psy5052 80 IEYMPFSGNQWNNTKIMPFSEMLTKIKEAHPD 111 (172)
Q Consensus 80 i~~~p~g~~~~~~~~~~~~~e~~~~l~~~~~~ 111 (172)
+.+..+-+. . .+....++++.+++.++.
T Consensus 154 i~l~Dt~G~-~---~P~~v~~lv~~~~~~~~~ 181 (237)
T PF00682_consen 154 IYLADTVGI-M---TPEDVAELVRALREALPD 181 (237)
T ss_dssp EEEEETTS--S----HHHHHHHHHHHHHHSTT
T ss_pred EEeeCccCC-c---CHHHHHHHHHHHHHhccC
Confidence 333323221 1 123456778888888864
No 151
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=93.76 E-value=0.43 Score=39.92 Aligned_cols=73 Identities=18% Similarity=0.226 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEEEecCCCHH-H-HHHHHHHHhcCCCeEEEE-eeeeCCCCCCCCCCCCCHHHHHHHHHH
Q psy5052 31 SRVLAGIDLAVQLGYDNLKVNVVVMKNFNDD-E-ILDFVLLTRDRPIDVRFI-EYMPFSGNQWNNTKIMPFSEMLTKIKE 107 (172)
Q Consensus 31 ~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~-e-i~~l~~~a~~~g~~~~~i-~~~p~g~~~~~~~~~~~~~e~~~~l~~ 107 (172)
+.+.++++++.++|+ ++.=.+|++||+||+ | +.+|.+-....|+....+ ..=++.+.. .-..+.++-++..++
T Consensus 236 ~e~~~A~~~L~~aGv-~l~NQsVLLrGVND~~evl~~L~~~L~~~gV~PYYl~~~D~~~G~~---hfr~~i~~~~~i~~~ 311 (369)
T COG1509 236 PEAREACAKLRDAGV-PLLNQSVLLRGVNDDPEVLKELSRALFDAGVKPYYLHQLDLVQGAA---HFRVPIAEGLQIVEE 311 (369)
T ss_pred HHHHHHHHHHHHcCc-eeecchheecccCCCHHHHHHHHHHHHHcCCcceEEeccCccCCcc---ceeccHHHHHHHHHH
Confidence 567789999999999 787779999999997 4 466777677788865433 233343332 224667765555443
No 152
>PRK00955 hypothetical protein; Provisional
Probab=93.59 E-value=0.37 Score=43.28 Aligned_cols=79 Identities=9% Similarity=0.205 Sum_probs=57.6
Q ss_pred eEEEeeeCCCHhhhccccCCC--CHHHHHHHHHHHH-HcCCCcEEEEEE---EecCCCHHHHHHHHHHHhcCCCe-EEEE
Q psy5052 8 SINISLDTLKPDKYEFITRRK--GWSRVLAGIDLAV-QLGYDNLKVNVV---VMKNFNDDEILDFVLLTRDRPID-VRFI 80 (172)
Q Consensus 8 ~v~iSlds~~~e~~~~i~g~~--~~~~vl~~i~~~~-~~g~~~v~in~v---~~~g~N~~ei~~l~~~a~~~g~~-~~~i 80 (172)
.+.|++.|.++++-+.++++. .|.+.++.++.+. +.|+ ...|.+. =.+|.+.+++.++++|+++++.. +.+.
T Consensus 436 ~L~IapESgSd~VLk~M~K~~~~~~~~f~~~~~~i~~~~G~-~~~I~~yfIvGfPGETeEDf~et~eflkel~~~~~qV~ 514 (620)
T PRK00955 436 QLKVAPEHISDRVLKLMGKPSREVYDKFVKKFDRINKKLGK-KQYLVPYLMSSHPGSTLEDAIELAEYTKDLGYQPEQVQ 514 (620)
T ss_pred CceeCcCCCChHHHHHhCCCCHHHHHHHHHHHHHhhhhcCC-CccEEEEEEEECCCCCHHHHHHHHHHHHHcCCCcceee
Confidence 578999999999988887643 3555555555554 6776 4334432 34788999999999999999986 4777
Q ss_pred eeeeCCC
Q psy5052 81 EYMPFSG 87 (172)
Q Consensus 81 ~~~p~g~ 87 (172)
.|.|..+
T Consensus 515 ~fTP~PG 521 (620)
T PRK00955 515 DFYPTPG 521 (620)
T ss_pred eeecCCC
Confidence 7888876
No 153
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=93.59 E-value=1.3 Score=35.98 Aligned_cols=101 Identities=16% Similarity=0.192 Sum_probs=63.7
Q ss_pred hhcCCCeEEEeeeCCCHhhhccccC--CCCHHHHHHHHHHHHHcCCCcEEEEEEEe----cCCCHHHHHHHHHHHhcCCC
Q psy5052 2 KKAGLDSINISLDTLKPDKYEFITR--RKGWSRVLAGIDLAVQLGYDNLKVNVVVM----KNFNDDEILDFVLLTRDRPI 75 (172)
Q Consensus 2 ~~aGl~~v~iSlds~~~e~~~~i~g--~~~~~~vl~~i~~~~~~g~~~v~in~v~~----~g~N~~ei~~l~~~a~~~g~ 75 (172)
+++|++.|+|++-..+.....+++. ...++++.+.++.+++.|+ .|.+...-. + .+.+.+.++++-+.+.|+
T Consensus 84 ~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~-~v~~~~~d~~~~~r-~~~~~~~~~~~~~~~~G~ 161 (280)
T cd07945 84 KSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGI-EVNIYLEDWSNGMR-DSPDYVFQLVDFLSDLPI 161 (280)
T ss_pred HHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCC-EEEEEEEeCCCCCc-CCHHHHHHHHHHHHHcCC
Confidence 4679999999996554444344432 2368888899999999998 677665431 3 456678888888888998
Q ss_pred eEEEEeeeeCCCCCCCCCCCCCHHHHHHHHHHhCC
Q psy5052 76 DVRFIEYMPFSGNQWNNTKIMPFSEMLTKIKEAHP 110 (172)
Q Consensus 76 ~~~~i~~~p~g~~~~~~~~~~~~~e~~~~l~~~~~ 110 (172)
+. +.+-.+-+. . .+....++.+.+++.++
T Consensus 162 ~~--i~l~DT~G~-~---~P~~v~~l~~~l~~~~~ 190 (280)
T cd07945 162 KR--IMLPDTLGI-L---SPFETYTYISDMVKRYP 190 (280)
T ss_pred CE--EEecCCCCC-C---CHHHHHHHHHHHHhhCC
Confidence 62 223222221 1 12234556666666664
No 154
>PRK01254 hypothetical protein; Provisional
Probab=92.81 E-value=0.78 Score=41.58 Aligned_cols=78 Identities=9% Similarity=0.175 Sum_probs=60.1
Q ss_pred eEEEeeeCCCHhhhccccCC--CCHHHHHHHHHHHHH-cCCCcEEEEEEE---ecCCCHHHHHHHHHHHhcCCCeE-EEE
Q psy5052 8 SINISLDTLKPDKYEFITRR--KGWSRVLAGIDLAVQ-LGYDNLKVNVVV---MKNFNDDEILDFVLLTRDRPIDV-RFI 80 (172)
Q Consensus 8 ~v~iSlds~~~e~~~~i~g~--~~~~~vl~~i~~~~~-~g~~~v~in~v~---~~g~N~~ei~~l~~~a~~~g~~~-~~i 80 (172)
.+.|-+.+.++++-+.++++ ..+++..+.++.+.+ .|. .+.+.+.+ .+|.+++|+.++++|+++++..+ ++.
T Consensus 515 ~LkVppEH~Sd~VLk~M~Kp~~~~~e~F~e~f~rirk~~gk-~q~LipyfIvGhPGeTeeDf~eLaefLkel~f~~eQVQ 593 (707)
T PRK01254 515 YLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDKYSKEAGK-EQYLIPYFISAHPGTTDEDMVNLALWLKKNRFRLDQVQ 593 (707)
T ss_pred ccccccccCCHHHHHHhCCCCcccHHHHHHHHHHHHHHCCC-CeEEEEeEEEECCCCCHHHHHHHHHHHHHhCCCcceee
Confidence 45566899999988887765 478999999999974 565 45554443 36778899999999999999876 555
Q ss_pred eeeeCC
Q psy5052 81 EYMPFS 86 (172)
Q Consensus 81 ~~~p~g 86 (172)
.|.|+.
T Consensus 594 ~FTPtP 599 (707)
T PRK01254 594 NFYPSP 599 (707)
T ss_pred eeecCC
Confidence 677877
No 155
>PRK09234 fbiC FO synthase; Reviewed
Probab=92.69 E-value=0.64 Score=43.37 Aligned_cols=103 Identities=15% Similarity=0.106 Sum_probs=59.3
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccc------cCCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcC-
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFI------TRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDR- 73 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i------~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~- 73 (172)
|+++|++ ..+++.+..+..|.+. .....+..-++.|+.++++|+ ++.-.+.+==|.+..|..+.+...+++
T Consensus 183 Lk~~g~s-~gl~lEt~~~~l~~~~g~~h~~~P~K~~~~RL~ti~~A~~lGi-~~tsG~L~GiGEt~edRve~L~~LR~Lq 260 (843)
T PRK09234 183 LKPVAPS-MGMMLETTSRRLFEEKGGPHYGSPDKDPAVRLRVLEDAGRLSV-PFTTGILIGIGETLAERAESLFAIRKLH 260 (843)
T ss_pred HHHhcCc-CCCCHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHcCC-CccceEEEECCCCHHHHHHHHHHHHHhh
Confidence 4556664 4566666555554321 112256677999999999999 654443332345666766666666655
Q ss_pred ----CC-eEEEEeeeeCCCCCCCCCCCCCHHHHHHHH
Q psy5052 74 ----PI-DVRFIEYMPFSGNQWNNTKIMPFSEMLTKI 105 (172)
Q Consensus 74 ----g~-~~~~i~~~p~g~~~~~~~~~~~~~e~~~~l 105 (172)
++ .+-...|+|..+.........+.+|+++.+
T Consensus 261 ~~~g~~~evi~~~F~p~~gT~l~~~~~~s~~e~Lr~i 297 (843)
T PRK09234 261 REYGHIQEVIVQNFRAKPDTAMAGVPDAGLEELLATI 297 (843)
T ss_pred HhhCCCcEEeecccccCCCCCCCCCCCCCHHHHHHHH
Confidence 33 233345677755433223457788876664
No 156
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=92.56 E-value=2 Score=35.95 Aligned_cols=100 Identities=11% Similarity=-0.024 Sum_probs=59.9
Q ss_pred hhcCCCeEEEeeeCCCHhhhccc-cCC---CCHHHHHHHHHHHHHcCCCcEEEEEEEe---c--C-CCHHHHHHHHHHHh
Q psy5052 2 KKAGLDSINISLDTLKPDKYEFI-TRR---KGWSRVLAGIDLAVQLGYDNLKVNVVVM---K--N-FNDDEILDFVLLTR 71 (172)
Q Consensus 2 ~~aGl~~v~iSlds~~~e~~~~i-~g~---~~~~~vl~~i~~~~~~g~~~v~in~v~~---~--g-~N~~ei~~l~~~a~ 71 (172)
.++|++.|++.+ +.++. |.+- .+. ..++.+.+.++.+++.|+ .|.+++... + + .+.+.+.++++-+.
T Consensus 131 ~~~g~~~v~i~~-s~Sd~-h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl-~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~ 207 (347)
T PLN02746 131 IAAGAKEVAVFA-SASES-FSKSNINCSIEESLVRYREVALAAKKHSI-PVRGYVSCVVGCPIEGPVPPSKVAYVAKELY 207 (347)
T ss_pred HHcCcCEEEEEE-ecCHH-HHHHHhCCCHHHHHHHHHHHHHHHHHcCC-eEEEEEEeeecCCccCCCCHHHHHHHHHHHH
Confidence 478999999999 45543 4332 122 357777789999999998 677444321 1 1 23456777888888
Q ss_pred cCCCeEEEEeeeeCCCCCCCCCCCCCHHHHHHHHHHhCC
Q psy5052 72 DRPIDVRFIEYMPFSGNQWNNTKIMPFSEMLTKIKEAHP 110 (172)
Q Consensus 72 ~~g~~~~~i~~~p~g~~~~~~~~~~~~~e~~~~l~~~~~ 110 (172)
+.|++. |.+-.+-+. . .+....++.+.|++.++
T Consensus 208 ~~Gad~--I~l~DT~G~-a---~P~~v~~lv~~l~~~~~ 240 (347)
T PLN02746 208 DMGCYE--ISLGDTIGV-G---TPGTVVPMLEAVMAVVP 240 (347)
T ss_pred HcCCCE--EEecCCcCC-c---CHHHHHHHHHHHHHhCC
Confidence 889862 333222111 1 12345566677776664
No 157
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=92.47 E-value=2 Score=34.51 Aligned_cols=102 Identities=12% Similarity=0.112 Sum_probs=62.2
Q ss_pred hhcCCCeEEEeeeCCCHhhhccccC--CCCHHHHHHHHHHHHHcCCCcEEEEEEEe-cC--CCHHHHHHHHHHHhcCCCe
Q psy5052 2 KKAGLDSINISLDTLKPDKYEFITR--RKGWSRVLAGIDLAVQLGYDNLKVNVVVM-KN--FNDDEILDFVLLTRDRPID 76 (172)
Q Consensus 2 ~~aGl~~v~iSlds~~~e~~~~i~g--~~~~~~vl~~i~~~~~~g~~~v~in~v~~-~g--~N~~ei~~l~~~a~~~g~~ 76 (172)
+++|++.|.|.+-+.+....+.+.. ...++.+.+.++.+++.|+ .|.++.... .+ .+.+.+.++++-+.+.|++
T Consensus 88 ~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~-~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~~ 166 (273)
T cd07941 88 LEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGR-EVIFDAEHFFDGYKANPEYALATLKAAAEAGAD 166 (273)
T ss_pred HhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCC-eEEEeEEeccccCCCCHHHHHHHHHHHHhCCCC
Confidence 4678988888877654333333332 1368889999999999998 788864322 21 3445566777777788886
Q ss_pred EEEEeeeeCCCCCCCCCCCCCHHHHHHHHHHhCC
Q psy5052 77 VRFIEYMPFSGNQWNNTKIMPFSEMLTKIKEAHP 110 (172)
Q Consensus 77 ~~~i~~~p~g~~~~~~~~~~~~~e~~~~l~~~~~ 110 (172)
. +.+..+-+. . .+....++.+.+++.++
T Consensus 167 ~--i~l~DT~G~-~---~P~~v~~lv~~l~~~~~ 194 (273)
T cd07941 167 W--LVLCDTNGG-T---LPHEIAEIVKEVRERLP 194 (273)
T ss_pred E--EEEecCCCC-C---CHHHHHHHHHHHHHhCC
Confidence 2 333222221 1 12334566677777665
No 158
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=92.23 E-value=1.9 Score=36.18 Aligned_cols=74 Identities=14% Similarity=0.159 Sum_probs=52.1
Q ss_pred hhcCCCeEEEeeeCCCHhhhccccCC--CCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCe
Q psy5052 2 KKAGLDSINISLDTLKPDKYEFITRR--KGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPID 76 (172)
Q Consensus 2 ~~aGl~~v~iSlds~~~e~~~~i~g~--~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~ 76 (172)
.++|++.|.|.+...+.....+++.. ..++.+.+.++.+++.|+ .+.+++.-..-.+.+.+.++++.+.+.|++
T Consensus 82 ~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~-~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~ 157 (365)
T TIGR02660 82 ARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGL-FVSVGGEDASRADPDFLVELAEVAAEAGAD 157 (365)
T ss_pred HcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCC-EEEEeecCCCCCCHHHHHHHHHHHHHcCcC
Confidence 46899999998865544444444421 257777799999999998 677775443324566788888888888886
No 159
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=91.96 E-value=2.8 Score=34.06 Aligned_cols=102 Identities=14% Similarity=0.040 Sum_probs=59.5
Q ss_pred hhcCCCeEEEeeeCCCHhhhccccCC--CCHHHHHHHHHHHHHcCCCcEEEEEEEe---c--C-CCHHHHHHHHHHHhcC
Q psy5052 2 KKAGLDSINISLDTLKPDKYEFITRR--KGWSRVLAGIDLAVQLGYDNLKVNVVVM---K--N-FNDDEILDFVLLTRDR 73 (172)
Q Consensus 2 ~~aGl~~v~iSlds~~~e~~~~i~g~--~~~~~vl~~i~~~~~~g~~~v~in~v~~---~--g-~N~~ei~~l~~~a~~~ 73 (172)
.++|++.|++++..-+.-...+++.. ..++.+.+.++.+++.|+ .+..+.... + | .+.+.+.++++-+.+.
T Consensus 89 ~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~-~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (287)
T PRK05692 89 LAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGV-RVRGYVSCVLGCPYEGEVPPEAVADVAERLFAL 167 (287)
T ss_pred HHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-EEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHc
Confidence 46899999998654332222222221 246667788999999998 666443321 1 1 2456788888888889
Q ss_pred CCeEEEEeeeeCCCCCCCCCCCCCHHHHHHHHHHhCC
Q psy5052 74 PIDVRFIEYMPFSGNQWNNTKIMPFSEMLTKIKEAHP 110 (172)
Q Consensus 74 g~~~~~i~~~p~g~~~~~~~~~~~~~e~~~~l~~~~~ 110 (172)
|++. |.+-.+.+. . .+....++.+.+++.++
T Consensus 168 G~d~--i~l~DT~G~-~---~P~~v~~lv~~l~~~~~ 198 (287)
T PRK05692 168 GCYE--ISLGDTIGV-G---TPGQVRAVLEAVLAEFP 198 (287)
T ss_pred CCcE--EEeccccCc-c---CHHHHHHHHHHHHHhCC
Confidence 9862 333322221 1 12335566667776664
No 160
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=91.70 E-value=2.3 Score=34.04 Aligned_cols=97 Identities=15% Similarity=0.187 Sum_probs=60.6
Q ss_pred CCeEEEeeeCCCHhh-hccccC--CCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEEEEee
Q psy5052 6 LDSINISLDTLKPDK-YEFITR--RKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRFIEY 82 (172)
Q Consensus 6 l~~v~iSlds~~~e~-~~~i~g--~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~~i~~ 82 (172)
++.|.+.. ++++.. ..++.. ...++.+.+.++.+++.|+ .|.++..-....+.+.+.++++-+.+.|++ -|.+
T Consensus 87 ~~~i~i~~-~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~--~i~l 162 (268)
T cd07940 87 VDRIHTFI-ATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGL-DVEFSAEDATRTDLDFLIEVVEAAIEAGAT--TINI 162 (268)
T ss_pred CCEEEEEe-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-eEEEeeecCCCCCHHHHHHHHHHHHHcCCC--EEEE
Confidence 88888877 444432 222222 1358889999999999998 788776544335666778888888888886 2333
Q ss_pred eeCCCCCCCCCCCCCHHHHHHHHHHhCC
Q psy5052 83 MPFSGNQWNNTKIMPFSEMLTKIKEAHP 110 (172)
Q Consensus 83 ~p~g~~~~~~~~~~~~~e~~~~l~~~~~ 110 (172)
..+.+. . .+....++++.+++.++
T Consensus 163 ~DT~G~-~---~P~~v~~lv~~l~~~~~ 186 (268)
T cd07940 163 PDTVGY-L---TPEEFGELIKKLKENVP 186 (268)
T ss_pred CCCCCC-C---CHHHHHHHHHHHHHhCC
Confidence 322221 1 12334556677777665
No 161
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=91.16 E-value=5.6 Score=33.14 Aligned_cols=88 Identities=11% Similarity=0.097 Sum_probs=55.0
Q ss_pred hcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEEEEee
Q psy5052 3 KAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRFIEY 82 (172)
Q Consensus 3 ~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~~i~~ 82 (172)
++|++.|.|..+ .+ ..+.+.+.|+.+++.|+ .+.++.......+.+++.++++.+.+.|++. +.+
T Consensus 99 ~~gvd~iri~~~-~~-----------e~~~~~~~i~~ak~~G~-~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~--i~i 163 (337)
T PRK08195 99 DAGVRVVRVATH-CT-----------EADVSEQHIGLARELGM-DTVGFLMMSHMAPPEKLAEQAKLMESYGAQC--VYV 163 (337)
T ss_pred HcCCCEEEEEEe-cc-----------hHHHHHHHHHHHHHCCC-eEEEEEEeccCCCHHHHHHHHHHHHhCCCCE--EEe
Confidence 466777766652 11 23567899999999998 7888765554356778888898888888863 333
Q ss_pred eeCCCCCCCCCCCCCHHHHHHHHHHhC
Q psy5052 83 MPFSGNQWNNTKIMPFSEMLTKIKEAH 109 (172)
Q Consensus 83 ~p~g~~~~~~~~~~~~~e~~~~l~~~~ 109 (172)
..+.+. . .+....++.+.+++..
T Consensus 164 ~DT~G~-~---~P~~v~~~v~~l~~~l 186 (337)
T PRK08195 164 VDSAGA-L---LPEDVRDRVRALRAAL 186 (337)
T ss_pred CCCCCC-C---CHHHHHHHHHHHHHhc
Confidence 333221 1 1223445556666655
No 162
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=90.63 E-value=7.2 Score=31.40 Aligned_cols=75 Identities=11% Similarity=0.044 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEE--ecCCCHHHHHHHHHHHhcCCCeEEEEeeeeCCCCCCCCCCCCCHHHHHHHHH
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVVV--MKNFNDDEILDFVLLTRDRPIDVRFIEYMPFSGNQWNNTKIMPFSEMLTKIK 106 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v~--~~g~N~~ei~~l~~~a~~~g~~~~~i~~~p~g~~~~~~~~~~~~~e~~~~l~ 106 (172)
.++.+.+.++.+++.|+ .+.++... -...+.+.+.++++.+.+.|++. +.+..+-+. . .+....++.+.++
T Consensus 116 ~~~~~~~~i~~ak~~G~-~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~--i~l~DT~G~-~---~P~~v~~lv~~l~ 188 (275)
T cd07937 116 DVRNLEVAIKAVKKAGK-HVEGAICYTGSPVHTLEYYVKLAKELEDMGADS--ICIKDMAGL-L---TPYAAYELVKALK 188 (275)
T ss_pred hHHHHHHHHHHHHHCCC-eEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCE--EEEcCCCCC-C---CHHHHHHHHHHHH
Confidence 37899999999999997 67764432 12256778888999999999863 223222111 1 1223455666676
Q ss_pred HhCC
Q psy5052 107 EAHP 110 (172)
Q Consensus 107 ~~~~ 110 (172)
+.++
T Consensus 189 ~~~~ 192 (275)
T cd07937 189 KEVG 192 (275)
T ss_pred HhCC
Confidence 6654
No 163
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=90.62 E-value=7.3 Score=30.88 Aligned_cols=108 Identities=14% Similarity=0.187 Sum_probs=66.8
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccC-CCCHHHHHHHHHHHHHcCCCcEEEEEEE--ecCCCHHHHHHHHHHHhcCCCeE
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITR-RKGWSRVLAGIDLAVQLGYDNLKVNVVV--MKNFNDDEILDFVLLTRDRPIDV 77 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g-~~~~~~vl~~i~~~~~~g~~~v~in~v~--~~g~N~~ei~~l~~~a~~~g~~~ 77 (172)
||++++|.+.+.+=|-+ ++-.++.+ ..+-+.-++.++.+++.|+ +|.-..++ ..|-=..|.. -+++..+...+.
T Consensus 106 lk~~~vdvvsLDfvgDn-~vIk~vy~l~ksv~dyl~~l~~L~e~~i-rvvpHitiGL~~gki~~e~k-aIdiL~~~~~Da 182 (275)
T COG1856 106 LKEELVDVVSLDFVGDN-DVIKRVYKLPKSVEDYLRSLLLLKENGI-RVVPHITIGLDFGKIHGEFK-AIDILVNYEPDA 182 (275)
T ss_pred HHHhcCcEEEEeecCCh-HHHHHHHcCCccHHHHHHHHHHHHHcCc-eeceeEEEEeccCcccchHH-HHHHHhcCCCCe
Confidence 46777776544444333 45555555 3467888999999999998 65544433 2332234554 456666677764
Q ss_pred -EEEeeeeCCCCCCCCCCCCCHHHHHHHH---HHhCCC
Q psy5052 78 -RFIEYMPFSGNQWNNTKIMPFSEMLTKI---KEAHPD 111 (172)
Q Consensus 78 -~~i~~~p~g~~~~~~~~~~~~~e~~~~l---~~~~~~ 111 (172)
-+.-+||+.+.+.......+.+|..+.+ ++.++.
T Consensus 183 lVl~vliPtpGtkm~~~~pp~~eE~i~v~~~AR~~f~~ 220 (275)
T COG1856 183 LVLVVLIPTPGTKMGNSPPPPVEEAIKVVKYARKKFPN 220 (275)
T ss_pred EEEEEEecCCchhccCCCCcCHHHHHHHHHHHHHhCCC
Confidence 5556899988765555566777765554 455553
No 164
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=90.61 E-value=4.6 Score=32.19 Aligned_cols=89 Identities=15% Similarity=0.127 Sum_probs=56.1
Q ss_pred hcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEEEEee
Q psy5052 3 KAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRFIEY 82 (172)
Q Consensus 3 ~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~~i~~ 82 (172)
++|++.++|.+.. + ..+.+.+.++.+++.|+ .+.++..-.-..+.+++.++++.+.+.|++. |.+
T Consensus 96 ~~g~~~iri~~~~-s-----------~~~~~~~~i~~ak~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~--i~l 160 (263)
T cd07943 96 DLGVDVVRVATHC-T-----------EADVSEQHIGAARKLGM-DVVGFLMMSHMASPEELAEQAKLMESYGADC--VYV 160 (263)
T ss_pred HcCCCEEEEEech-h-----------hHHHHHHHHHHHHHCCC-eEEEEEEeccCCCHHHHHHHHHHHHHcCCCE--EEE
Confidence 4566666664432 1 13467889999999998 7888864332267778888999988899873 333
Q ss_pred eeCCCCCCCCCCCCCHHHHHHHHHHhCC
Q psy5052 83 MPFSGNQWNNTKIMPFSEMLTKIKEAHP 110 (172)
Q Consensus 83 ~p~g~~~~~~~~~~~~~e~~~~l~~~~~ 110 (172)
-.+-+ .. .+....++.+.+++.++
T Consensus 161 ~DT~G-~~---~P~~v~~lv~~l~~~~~ 184 (263)
T cd07943 161 TDSAG-AM---LPDDVRERVRALREALD 184 (263)
T ss_pred cCCCC-Cc---CHHHHHHHHHHHHHhCC
Confidence 22222 11 12335566777777765
No 165
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=90.14 E-value=7.7 Score=32.26 Aligned_cols=88 Identities=11% Similarity=0.098 Sum_probs=53.9
Q ss_pred hcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEEEEee
Q psy5052 3 KAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRFIEY 82 (172)
Q Consensus 3 ~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~~i~~ 82 (172)
++|++.|+|..+- ...+.+.+.|+.+++.|+ .+.++.......+.+++.++++.+.+.|++. +.+
T Consensus 98 ~~gvd~iri~~~~------------~e~d~~~~~i~~ak~~G~-~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~--i~i 162 (333)
T TIGR03217 98 DAGARTVRVATHC------------TEADVSEQHIGMARELGM-DTVGFLMMSHMTPPEKLAEQAKLMESYGADC--VYI 162 (333)
T ss_pred HCCCCEEEEEecc------------chHHHHHHHHHHHHHcCC-eEEEEEEcccCCCHHHHHHHHHHHHhcCCCE--EEE
Confidence 4677777766531 123567889999999998 6777765444356677888888888888863 333
Q ss_pred eeCCCCCCCCCCCCCHHHHHHHHHHhC
Q psy5052 83 MPFSGNQWNNTKIMPFSEMLTKIKEAH 109 (172)
Q Consensus 83 ~p~g~~~~~~~~~~~~~e~~~~l~~~~ 109 (172)
..+.+. . .+....++...+++..
T Consensus 163 ~DT~G~-~---~P~~v~~~v~~l~~~l 185 (333)
T TIGR03217 163 VDSAGA-M---LPDDVRDRVRALKAVL 185 (333)
T ss_pred ccCCCC-C---CHHHHHHHHHHHHHhC
Confidence 333221 1 1123445555566554
No 166
>KOG2900|consensus
Probab=90.02 E-value=0.29 Score=39.24 Aligned_cols=106 Identities=20% Similarity=0.280 Sum_probs=61.3
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCC---CeE
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRP---IDV 77 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g---~~~ 77 (172)
||+|||...|=-||+.. |-|.++--..+++.-++.|++++++|+ .|----.+==|...+|---++.-...+. -.+
T Consensus 185 LKdAGLTAYNHNlDTSR-EyYskvItTRtYDdRL~Ti~nvr~aGi-kvCsGGIlGLGE~e~DriGlihtLatmp~HPESv 262 (380)
T KOG2900|consen 185 LKDAGLTAYNHNLDTSR-EYYSKVITTRTYDDRLQTIKNVREAGI-KVCSGGILGLGESEDDRIGLIHTLATMPPHPESV 262 (380)
T ss_pred HHhccceecccCccchh-hhhcccceecchHHHHHHHHHHHHhcc-eecccccccccccccceeeeeeeeccCCCCCccc
Confidence 78999999999999765 667776333479999999999999998 4432222212222222111222112122 122
Q ss_pred EEEeeeeCCCCC--CCCCCCCCHHHHHHHHHHh
Q psy5052 78 RFIEYMPFSGNQ--WNNTKIMPFSEMLTKIKEA 108 (172)
Q Consensus 78 ~~i~~~p~g~~~--~~~~~~~~~~e~~~~l~~~ 108 (172)
-+..++|+.+.+ ....+.+.+.|+++.|...
T Consensus 263 PiN~LvaikGTP~~d~~~k~l~i~e~lR~IaTA 295 (380)
T KOG2900|consen 263 PINRLVAIKGTPMADEKSKKLQIDEILRTIATA 295 (380)
T ss_pred ccceEEecCCcccchhhcccccHHHHHHHHhhh
Confidence 233344554432 2224567788887776543
No 167
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=89.93 E-value=4.1 Score=34.48 Aligned_cols=104 Identities=17% Similarity=0.115 Sum_probs=56.8
Q ss_pred ChhcCCCeEEEeeeCCCHhhhcc-ccCC-CCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHH----HHHHHHhcCC
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEF-ITRR-KGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEIL----DFVLLTRDRP 74 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~-i~g~-~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~----~l~~~a~~~g 74 (172)
||+||++.+-..--..-.+.+++ +.++ .+++.=++.++.+.++|+ +..-.+++--+.+..|.. .+.++=++.|
T Consensus 167 Lk~aGldsmpg~~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah~lGI-~~tatml~Gh~E~~ed~~~hl~~ir~lQ~~~g 245 (370)
T COG1060 167 LKEAGLDSMPGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAHRLGI-PTTATMLLGHVETREDRIDHLEHIRDLQDETG 245 (370)
T ss_pred HHHcCCCcCcCcceeechHHHHHhhCCCCCCHHHHHHHHHHHHHcCC-CccceeEEEecCCHHHHHHHHHHHHHHHHHhC
Confidence 67889886654444333444434 3433 389999999999999999 555444444444655533 3333334555
Q ss_pred CeEEEE--eeeeCCCC-CCCCCCCCCHHHHHHHH
Q psy5052 75 IDVRFI--EYMPFSGN-QWNNTKIMPFSEMLTKI 105 (172)
Q Consensus 75 ~~~~~i--~~~p~g~~-~~~~~~~~~~~e~~~~l 105 (172)
--..|| .|.|.... ........+..+++..+
T Consensus 246 g~~~fI~~~f~p~~~~~~~~~~~~~~~~~~l~~i 279 (370)
T COG1060 246 GFQEFIPLRFRPENGPLPAEVVPEASLEQDLKAI 279 (370)
T ss_pred CcEEEEcccccCCCCCccccCCCCCCHHHHHHHH
Confidence 422333 34554443 11111234555555553
No 168
>PRK00915 2-isopropylmalate synthase; Validated
Probab=89.14 E-value=5 Score=35.39 Aligned_cols=74 Identities=11% Similarity=-0.035 Sum_probs=51.4
Q ss_pred hhcCCCeEEEeeeCCCHhhhccccCC--CCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCe
Q psy5052 2 KKAGLDSINISLDTLKPDKYEFITRR--KGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPID 76 (172)
Q Consensus 2 ~~aGl~~v~iSlds~~~e~~~~i~g~--~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~ 76 (172)
+++|.++|.+.+.+.+.....+++.. ..++.+.+.++.+++.|+ .|.++..-.--.+.+.+.++++.+.+.|++
T Consensus 89 ~~~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~-~v~f~~ed~~r~d~~~l~~~~~~~~~~Ga~ 164 (513)
T PRK00915 89 KPAEAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTD-DVEFSAEDATRTDLDFLCRVVEAAIDAGAT 164 (513)
T ss_pred hcCCCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC-eEEEEeCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 46788899998877655444445431 357777899999999998 676664322113455688888888888986
No 169
>PRK09389 (R)-citramalate synthase; Provisional
Probab=88.76 E-value=7 Score=34.29 Aligned_cols=75 Identities=9% Similarity=0.058 Sum_probs=52.2
Q ss_pred hhcCCCeEEEeeeCCCHhhhccccC--CCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeE
Q psy5052 2 KKAGLDSINISLDTLKPDKYEFITR--RKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDV 77 (172)
Q Consensus 2 ~~aGl~~v~iSlds~~~e~~~~i~g--~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~ 77 (172)
.++|++.|++.+.+.+.....+++. ...++.+.+.++.+++.|+ .|.++..-..-.+.+.+.++++-+.+.|++.
T Consensus 83 ~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~-~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~ 159 (488)
T PRK09389 83 LECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGL-IVELSGEDASRADLDFLKELYKAGIEAGADR 159 (488)
T ss_pred HhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC-EEEEEEeeCCCCCHHHHHHHHHHHHhCCCCE
Confidence 4689999999987655443344433 1368888889999999998 6777654322145556778888888888863
No 170
>KOG0256|consensus
Probab=88.28 E-value=2 Score=36.75 Aligned_cols=124 Identities=18% Similarity=0.241 Sum_probs=71.5
Q ss_pred cCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCC-------HHHHHHHHHHHhcCCCe
Q psy5052 4 AGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFN-------DDEILDFVLLTRDRPID 76 (172)
Q Consensus 4 aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N-------~~ei~~l~~~a~~~g~~ 76 (172)
.|++-+-|-++|-+- -+|+ -+..-++.+++++.|+ +|+=-.+..| .| .+++..+++||.+.+++
T Consensus 191 Tgveivpv~c~Ss~~---f~it----v~alE~A~~~A~~~~~-kVkGvlitNP-sNPLG~~~~~e~L~~ll~Fa~~kniH 261 (471)
T KOG0256|consen 191 TGVEIVPVHCSSSNG---FQIT----VEALEAALNQARKLGL-KVKGVLITNP-SNPLGTTLSPEELISLLNFASRKNIH 261 (471)
T ss_pred cCceEEEEEeecCCC---cccc----HHHHHHHHHHHHHhCC-ceeEEEEeCC-CCCCCCccCHHHHHHHHHHHhhcceE
Confidence 466656666666442 2232 3555567778888887 6664444444 34 36899999999999998
Q ss_pred EEEEeeeeCCCCCCCCCCCCCHHHHHHHHHHhCCCceeccCCCCCceeEEEeC---CCC-ceEEEEcCCCCCcccC
Q psy5052 77 VRFIEYMPFSGNQWNNTKIMPFSEMLTKIKEAHPDLLTLENAPNDTSKAYKVP---EFK-GQVGFITSMTEHFCGT 148 (172)
Q Consensus 77 ~~~i~~~p~g~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~g~i~~~~~~~C~~ 148 (172)
+-.-|.. -..-+...++.+..|+.+... +.+ ......|.+. |.+ -++|+|-+.....|.+
T Consensus 262 vI~DEIy--a~sVF~~~~F~Sv~ev~~~~~-----~~~-----~rvHivyslSKD~GlpGfRvGviYS~ne~Vvsa 325 (471)
T KOG0256|consen 262 VISDEIY--AGSVFDKSEFRSVLEVRKDPH-----LDP-----DRVHIVYSLSKDFGLPGFRVGVIYSNNEDVVSA 325 (471)
T ss_pred EEeehhh--cccccCccCceEHHHHhhccc-----cCC-----CcEEEEEEeccccCCCceEEEEEEecChHHHHH
Confidence 7665531 111122335677777655432 111 1223445432 111 2789888887766654
No 171
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=86.55 E-value=3.5 Score=33.69 Aligned_cols=78 Identities=14% Similarity=0.222 Sum_probs=48.8
Q ss_pred hhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEE--ec-CCCHHHHHHHHHHHhcCCCeEE
Q psy5052 2 KKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVV--MK-NFNDDEILDFVLLTRDRPIDVR 78 (172)
Q Consensus 2 ~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~--~~-g~N~~ei~~l~~~a~~~g~~~~ 78 (172)
...|++.|-|-+.+... ....+.++..++|+.++++- +.+.|.+++ ++ |.+.+- .++++-++..|+.+.
T Consensus 101 ~~y~~dgiDfDiE~~~~------~d~~~~~~~~~al~~Lq~~~-p~l~vs~Tlp~~p~gl~~~g-~~~l~~a~~~Gv~~d 172 (294)
T cd06543 101 DAYGLTHLDFDIEGGAL------TDTAAIDRRAQALALLQKEY-PDLKISFTLPVLPTGLTPDG-LNVLEAAAANGVDLD 172 (294)
T ss_pred HHhCCCeEEEeccCCcc------ccchhHHHHHHHHHHHHHHC-CCcEEEEecCCCCCCCChhH-HHHHHHHHHcCCCcc
Confidence 34566666665555331 11124677788888888653 234555443 44 444333 368899999999999
Q ss_pred EEeeeeCCC
Q psy5052 79 FIEYMPFSG 87 (172)
Q Consensus 79 ~i~~~p~g~ 87 (172)
++.+|++.-
T Consensus 173 ~VNiMtmDy 181 (294)
T cd06543 173 TVNIMTMDY 181 (294)
T ss_pred eeeeeeecC
Confidence 999988754
No 172
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=86.24 E-value=4.2 Score=32.04 Aligned_cols=44 Identities=20% Similarity=0.319 Sum_probs=33.7
Q ss_pred CCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEec
Q psy5052 5 GLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMK 56 (172)
Q Consensus 5 Gl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~ 56 (172)
.++.++||+++.++.. .+.|+...++|+.+.+ +. ++.+.+|+..
T Consensus 118 ~~d~v~vs~K~~~sg~------~~~~~~~~~~ik~l~~-~~-~~~vK~Vv~~ 161 (238)
T TIGR03365 118 DLDDLTLSPKPPSSGM------ETDWQALDDCIERLDD-GP-QTSLKVVVFD 161 (238)
T ss_pred hCCEEEEeCCCCCCCC------CCcHHHHHHHHHHhhh-cC-ceEEEEEECC
Confidence 3567889999876521 1358888999998887 66 7999999885
No 173
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=85.50 E-value=11 Score=30.61 Aligned_cols=73 Identities=12% Similarity=0.211 Sum_probs=46.7
Q ss_pred hhcCCCeEEEeeeCCCHhhhccccC--CCCHHHHHHHHHHHHHcCCCcEEEEEE-EecCCCH-----HHHHHHHHHHhcC
Q psy5052 2 KKAGLDSINISLDTLKPDKYEFITR--RKGWSRVLAGIDLAVQLGYDNLKVNVV-VMKNFND-----DEILDFVLLTRDR 73 (172)
Q Consensus 2 ~~aGl~~v~iSlds~~~e~~~~i~g--~~~~~~vl~~i~~~~~~g~~~v~in~v-~~~g~N~-----~ei~~l~~~a~~~ 73 (172)
.++|++.|++++-..+.-...+++. ...++++.+.++.+++.|+ .|.+..- ..| .+. +-+.++++.+.+.
T Consensus 84 ~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~-~v~~~~ed~~r-~d~~~~v~~~~~~~~~~~~~~ 161 (279)
T cd07947 84 KEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGI-KPRCHLEDITR-ADIYGFVLPFVNKLMKLSKES 161 (279)
T ss_pred HHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCC-eEEEEEEcccC-CCcccchHHHHHHHHHHHHHC
Confidence 3679999999884433223334432 2368888889999999998 6665542 122 111 2366777777778
Q ss_pred CCe
Q psy5052 74 PID 76 (172)
Q Consensus 74 g~~ 76 (172)
|++
T Consensus 162 G~~ 164 (279)
T cd07947 162 GIP 164 (279)
T ss_pred CCC
Confidence 986
No 174
>PF10126 Nit_Regul_Hom: Uncharacterized protein, homolog of nitrogen regulatory protein PII; InterPro: IPR019296 This family consists of various hypothetical archaeal proteins. It includes a putative nitrogen regulatory protein PII homolog.
Probab=84.85 E-value=4.8 Score=27.87 Aligned_cols=64 Identities=9% Similarity=0.131 Sum_probs=45.0
Q ss_pred ChhcCCCeEE-EeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHH
Q psy5052 1 YKKAGLDSIN-ISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVL 68 (172)
Q Consensus 1 L~~aGl~~v~-iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~ 68 (172)
|.+.|+..+. .-..+++|+.+..+.-....+.++++|+.+.+. .|-|+||+-. .+...|.+.++
T Consensus 23 Lte~GITGFyl~eYkGmSP~~wkgf~l~EDpe~ai~~I~d~s~~---aV~I~TVV~~-~~~~~i~~~i~ 87 (110)
T PF10126_consen 23 LTEGGITGFYLHEYKGMSPQDWKGFLLDEDPEMAIKAINDLSEN---AVLIGTVVDE-EKVEKIEKLIK 87 (110)
T ss_pred HHhcCccEEEeEeecCCChHHhcCcccccCHHHHHHHHHHhccC---cEEEEEEECH-HHHHHHHHHHH
Confidence 4577887776 677899999888775445678888888877664 4789998765 34445555444
No 175
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=83.20 E-value=4.8 Score=33.72 Aligned_cols=70 Identities=14% Similarity=0.159 Sum_probs=47.6
Q ss_pred hcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCC-cEEEEEEEecCCCHHHHHHHHHHHhcCCCe
Q psy5052 3 KAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYD-NLKVNVVVMKNFNDDEILDFVLLTRDRPID 76 (172)
Q Consensus 3 ~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~-~v~in~v~~~g~N~~ei~~l~~~a~~~g~~ 76 (172)
++|.|.|.++.....-..+. ..-+.+++.++|+.++++|.+ -|.+|+.+.. .....+...++.+.+.|++
T Consensus 24 ~~GADaVY~G~~~~~~R~~a---~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~-~~~~~~~~~l~~l~e~GvD 94 (347)
T COG0826 24 AAGADAVYIGEKEFGLRRRA---LNFSVEDLAEAVELAHSAGKKVYVAVNTLLHN-DELETLERYLDRLVELGVD 94 (347)
T ss_pred HcCCCEEEeCCccccccccc---ccCCHHHHHHHHHHHHHcCCeEEEEecccccc-chhhHHHHHHHHHHHcCCC
Confidence 57889999987733321111 123678899999999999961 3666766655 3555667777877778876
No 176
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=83.18 E-value=1.4 Score=35.66 Aligned_cols=79 Identities=13% Similarity=0.181 Sum_probs=50.3
Q ss_pred hhcCCCeEEEeeeCCCHhhhccccCC-------------C--CHHHHHHHHHHHHHcCCCcEEEEEEEec-----C--CC
Q psy5052 2 KKAGLDSINISLDTLKPDKYEFITRR-------------K--GWSRVLAGIDLAVQLGYDNLKVNVVVMK-----N--FN 59 (172)
Q Consensus 2 ~~aGl~~v~iSlds~~~e~~~~i~g~-------------~--~~~~vl~~i~~~~~~g~~~v~in~v~~~-----g--~N 59 (172)
.++|++.|-+..-+.+|+.++.++.- . +|....++++.+.++|...|.+-+.+-. . .+
T Consensus 30 ~~~Gv~~IEvg~~~~s~~e~~av~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t 109 (280)
T cd07945 30 QELKVDRIEVASARVSEGEFEAVQKIIDWAAEEGLLDRIEVLGFVDGDKSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKT 109 (280)
T ss_pred HHhCCCEEEecCCCCCHHHHHHHHHHHHHhhhhccccCcEEEEecCcHHHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcC
Confidence 35599999998776777555444210 0 1445567899999999854444432211 0 11
Q ss_pred H----HHHHHHHHHHhcCCCeEEEE
Q psy5052 60 D----DEILDFVLLTRDRPIDVRFI 80 (172)
Q Consensus 60 ~----~ei~~l~~~a~~~g~~~~~i 80 (172)
. +++.+++++|++.|..+++.
T Consensus 110 ~~e~l~~~~~~i~~a~~~G~~v~~~ 134 (280)
T cd07945 110 PEEHFADIREVIEYAIKNGIEVNIY 134 (280)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 1 34778899999999887663
No 177
>KOG1160|consensus
Probab=81.86 E-value=3.9 Score=35.44 Aligned_cols=65 Identities=17% Similarity=0.311 Sum_probs=51.4
Q ss_pred CCeEEEeeeCCCHhhhccccCCC---CHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHh
Q psy5052 6 LDSINISLDTLKPDKYEFITRRK---GWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTR 71 (172)
Q Consensus 6 l~~v~iSlds~~~e~~~~i~g~~---~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~ 71 (172)
|..+.+|+|..+++.-..+-++- =|++.++.++.+++.- .+..+.+++.+|.|.+|+++-.++..
T Consensus 403 vtqlyvsvda~Tktslk~idrPlfkdFwEr~~d~l~~lk~K~-qrtvyRlTlVkg~n~dd~~Ayfnlv~ 470 (601)
T KOG1160|consen 403 VTQLYVSVDASTKTSLKKIDRPLFKDFWERFLDSLKALKKKQ-QRTVYRLTLVKGWNSDDLPAYFNLVS 470 (601)
T ss_pred hheeEEEEeecchhhhcCCCCchHHHHHHHHHHHHHHHHHhh-cceEEEEEEeccccccccHHHHHHHh
Confidence 45678999999998888776542 3677778888887544 36899999999999999998888765
No 178
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=81.68 E-value=16 Score=32.30 Aligned_cols=74 Identities=11% Similarity=0.070 Sum_probs=49.3
Q ss_pred hhcCCCeEEEeeeCCCHhhhccccC--CCCHHHHHHHHHHHHHcCCCcEEEEEEEe-cC--CCHHHHHHHHHHHhcCCCe
Q psy5052 2 KKAGLDSINISLDTLKPDKYEFITR--RKGWSRVLAGIDLAVQLGYDNLKVNVVVM-KN--FNDDEILDFVLLTRDRPID 76 (172)
Q Consensus 2 ~~aGl~~v~iSlds~~~e~~~~i~g--~~~~~~vl~~i~~~~~~g~~~v~in~v~~-~g--~N~~ei~~l~~~a~~~g~~ 76 (172)
+++|.+.|.|.+-+.+....++++. ...++.+.++++.+++.|. .|.++..-. .+ .+.+.+.++++-+.+.|++
T Consensus 95 ~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~-~v~~~~e~~~Da~r~d~~~l~~~~~~~~~~Gad 173 (524)
T PRK12344 95 LDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGR-EVIFDAEHFFDGYKANPEYALATLKAAAEAGAD 173 (524)
T ss_pred HhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCC-eEEEccccccccccCCHHHHHHHHHHHHhCCCC
Confidence 4678888998887654433344432 2368888899999999998 777654311 11 3344566777777888886
No 179
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=79.92 E-value=33 Score=30.45 Aligned_cols=102 Identities=14% Similarity=0.092 Sum_probs=63.2
Q ss_pred hhcCCCeEEEeeeCCCHhhhccccC--CCCHHHHHHHHHHHHHcCCCcEEEEEE-EecC--CCHHHHHHHHHHHhcCCCe
Q psy5052 2 KKAGLDSINISLDTLKPDKYEFITR--RKGWSRVLAGIDLAVQLGYDNLKVNVV-VMKN--FNDDEILDFVLLTRDRPID 76 (172)
Q Consensus 2 ~~aGl~~v~iSlds~~~e~~~~i~g--~~~~~~vl~~i~~~~~~g~~~v~in~v-~~~g--~N~~ei~~l~~~a~~~g~~ 76 (172)
+++|.+.|.|.+-+.+.....+++. ...++.+.++++.+++.|. .|.+... ...+ .+.+.+.++++-+.+.|++
T Consensus 91 ~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~-~V~~~~e~f~D~~r~~~~~l~~~~~~a~~aGad 169 (526)
T TIGR00977 91 IKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGD-EVIYDAEHFFDGYKANPEYALATLATAQQAGAD 169 (526)
T ss_pred hcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-eEEEEeeeeeecccCCHHHHHHHHHHHHhCCCC
Confidence 4678888888887766555455543 2367778888999999998 6765433 1122 4566788888888888986
Q ss_pred EEEEeeeeCCCCCCCCCCCCCHHHHHHHHHHhCC
Q psy5052 77 VRFIEYMPFSGNQWNNTKIMPFSEMLTKIKEAHP 110 (172)
Q Consensus 77 ~~~i~~~p~g~~~~~~~~~~~~~e~~~~l~~~~~ 110 (172)
. +.+..+-+. . .+....++++.+.+.++
T Consensus 170 ~--i~i~DTvG~-~---~P~~v~~li~~l~~~~~ 197 (526)
T TIGR00977 170 W--LVLCDTNGG-T---LPHEISEITTKVKRSLK 197 (526)
T ss_pred e--EEEecCCCC-c---CHHHHHHHHHHHHHhCC
Confidence 3 222222111 1 12334556666766664
No 180
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=79.87 E-value=17 Score=32.80 Aligned_cols=89 Identities=15% Similarity=0.196 Sum_probs=54.9
Q ss_pred hhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEE--EEEEEecCCCHHHHHHHHHHHhcCCCeEEE
Q psy5052 2 KKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLK--VNVVVMKNFNDDEILDFVLLTRDRPIDVRF 79 (172)
Q Consensus 2 ~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~--in~v~~~g~N~~ei~~l~~~a~~~g~~~~~ 79 (172)
+++|++.+.|. |+++ .++.+..+|+.++++|. .+. |.++..+-.+.+.+.++++-+.+.|++.
T Consensus 107 ~~~Gid~~rif-d~ln-----------d~~~~~~ai~~ak~~G~-~~~~~i~yt~~p~~~~~~~~~~a~~l~~~Gad~-- 171 (593)
T PRK14040 107 VKNGMDVFRVF-DAMN-----------DPRNLETALKAVRKVGA-HAQGTLSYTTSPVHTLQTWVDLAKQLEDMGVDS-- 171 (593)
T ss_pred HhcCCCEEEEe-eeCC-----------cHHHHHHHHHHHHHcCC-eEEEEEEEeeCCccCHHHHHHHHHHHHHcCCCE--
Confidence 35677777766 3332 35788899999999997 654 5555555457777888888888899873
Q ss_pred EeeeeCCCCCCCCCCCCCHHHHHHHHHHhC
Q psy5052 80 IEYMPFSGNQWNNTKIMPFSEMLTKIKEAH 109 (172)
Q Consensus 80 i~~~p~g~~~~~~~~~~~~~e~~~~l~~~~ 109 (172)
+.+-.+.+. . .+....++.+.|++.+
T Consensus 172 i~i~Dt~G~-l---~P~~~~~lv~~lk~~~ 197 (593)
T PRK14040 172 LCIKDMAGL-L---KPYAAYELVSRIKKRV 197 (593)
T ss_pred EEECCCCCC-c---CHHHHHHHHHHHHHhc
Confidence 222222221 1 1223445666666665
No 181
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=78.89 E-value=16 Score=29.69 Aligned_cols=74 Identities=22% Similarity=0.337 Sum_probs=40.6
Q ss_pred ChhcCCCeEE-EeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCC-CcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEE
Q psy5052 1 YKKAGLDSIN-ISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGY-DNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVR 78 (172)
Q Consensus 1 L~~aGl~~v~-iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~-~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~ 78 (172)
|+..|+|.|- .=||...+- ....+.+++++++.+.+.|. +.+.| .+++.+.++++++. .+.-..++
T Consensus 95 l~rLg~dyvDLyLiHwP~~~------~~~~~~etw~alE~l~~~G~ir~IGV-----SNF~~~~L~~l~~~-~~~~p~~N 162 (280)
T COG0656 95 LKRLGLDYVDLYLIHWPVPN------KYVVIEETWKALEELVDEGLIRAIGV-----SNFGVEHLEELLSL-AKVKPAVN 162 (280)
T ss_pred HHHhCCCceeEEEECCCCCc------cCccHHHHHHHHHHHHhcCCccEEEe-----eCCCHHHHHHHHHh-cCCCCceE
Confidence 4566776665 334444332 01127788888988888884 11222 23666666666666 32333445
Q ss_pred EEeeeeCC
Q psy5052 79 FIEYMPFS 86 (172)
Q Consensus 79 ~i~~~p~g 86 (172)
.++|.|.-
T Consensus 163 QIe~hp~~ 170 (280)
T COG0656 163 QIEYHPYL 170 (280)
T ss_pred EEEeccCC
Confidence 55665553
No 182
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=78.88 E-value=5.1 Score=33.39 Aligned_cols=48 Identities=15% Similarity=0.223 Sum_probs=31.0
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEE
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVV 54 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~ 54 (172)
||++|+..|.+=+ -.+|.. -|..+++.+++..++++++|+ .|-|.+.-
T Consensus 33 lk~~G~N~vRlRv-wv~P~~----~g~~~~~~~~~~akrak~~Gm-~vlldfHY 80 (332)
T PF07745_consen 33 LKDHGVNAVRLRV-WVNPYD----GGYNDLEDVIALAKRAKAAGM-KVLLDFHY 80 (332)
T ss_dssp HHHTT--EEEEEE--SS-TT----TTTTSHHHHHHHHHHHHHTT--EEEEEE-S
T ss_pred HHhcCCCeEEEEe-ccCCcc----cccCCHHHHHHHHHHHHHCCC-eEEEeecc
Confidence 5788888777776 355544 344578999999999999998 67777653
No 183
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=78.06 E-value=27 Score=30.87 Aligned_cols=100 Identities=13% Similarity=0.063 Sum_probs=58.4
Q ss_pred hcCCCeEEEeeeCCCHhhhccccC--CCCHHHHHHHHHHHHHcCCCc-EEEEEEE-ecCCCHHHHHHHHHHHhcCCCeEE
Q psy5052 3 KAGLDSINISLDTLKPDKYEFITR--RKGWSRVLAGIDLAVQLGYDN-LKVNVVV-MKNFNDDEILDFVLLTRDRPIDVR 78 (172)
Q Consensus 3 ~aGl~~v~iSlds~~~e~~~~i~g--~~~~~~vl~~i~~~~~~g~~~-v~in~v~-~~g~N~~ei~~l~~~a~~~g~~~~ 78 (172)
++|.++|.|.+-..+.....+++. ...++.+.+.++.+++.|+ . +.+.+-- .+ .+.+.+.++++.+.+.|++.
T Consensus 179 ~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~-~~v~f~~EDa~R-td~efl~~~~~~a~~~Gad~- 255 (503)
T PLN03228 179 YAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGF-HDIQFGCEDGGR-SDKEFLCKILGEAIKAGATS- 255 (503)
T ss_pred ccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-ceEEeccccccc-cCHHHHHHHHHHHHhcCCCE-
Confidence 347778888877665433344432 2368888889999999997 4 4433321 12 23344678888888888863
Q ss_pred EEeeeeCCCCCCCCCCCCCHHHHHHHHHHhCC
Q psy5052 79 FIEYMPFSGNQWNNTKIMPFSEMLTKIKEAHP 110 (172)
Q Consensus 79 ~i~~~p~g~~~~~~~~~~~~~e~~~~l~~~~~ 110 (172)
+.+-.+-+. . .+....++.+.+.+.++
T Consensus 256 -I~l~DTvG~-~---tP~~v~~lV~~l~~~~~ 282 (503)
T PLN03228 256 -VGIADTVGI-N---MPHEFGELVTYVKANTP 282 (503)
T ss_pred -EEEecCCCC-C---CHHHHHHHHHHHHHHhc
Confidence 233222221 1 12235566677776654
No 184
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=77.66 E-value=14 Score=29.65 Aligned_cols=71 Identities=13% Similarity=0.139 Sum_probs=43.2
Q ss_pred hhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHc-CCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeE
Q psy5052 2 KKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQL-GYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDV 77 (172)
Q Consensus 2 ~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~-g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~ 77 (172)
.++|.+.|.|.+...+......+ ....+.+.+.++.++++ ++ +|.+.+. .+...+++.++++.+.+.|++.
T Consensus 121 ~~~G~d~ielN~~cP~~~~~~~~--~~~~~~~~eiv~~vr~~~~~-pv~vKl~--~~~~~~~~~~~a~~l~~~Gad~ 192 (289)
T cd02810 121 ERAGAKALELNLSCPNVGGGRQL--GQDPEAVANLLKAVKAAVDI-PLLVKLS--PYFDLEDIVELAKAAERAGADG 192 (289)
T ss_pred HHhCCCEEEEEcCCCCCCCCccc--ccCHHHHHHHHHHHHHccCC-CEEEEeC--CCCCHHHHHHHHHHHHHcCCCE
Confidence 45678877777765543221111 12455666666666654 66 6665543 2345668889999999999873
No 185
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=77.23 E-value=26 Score=25.86 Aligned_cols=69 Identities=12% Similarity=0.058 Sum_probs=43.3
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCC---------------HHHHHH
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFN---------------DDEILD 65 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N---------------~~ei~~ 65 (172)
++++|++.|.++.+...+..-. ...+-+-.+.+.+.|+.-+.+...... .+ ...+..
T Consensus 4 ~~~~G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~gl~i~~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~ 75 (213)
T PF01261_consen 4 AAEAGFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDYGLKIASLHPPTNF-WSPDEENGSANDEREEALEYLKK 75 (213)
T ss_dssp HHHTTHSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHTTCEEEEEEEEESS-SCTGTTSTTSSSHHHHHHHHHHH
T ss_pred HHHcCCCEEEEecCCCcccccc-------hHHHHHHHHHHHHcCCeEEEEeccccc-ccccccccCcchhhHHHHHHHHH
Confidence 3678999998888765543211 234444455556889832334443332 22 457889
Q ss_pred HHHHHhcCCCeE
Q psy5052 66 FVLLTRDRPIDV 77 (172)
Q Consensus 66 l~~~a~~~g~~~ 77 (172)
.+++|+.+|+..
T Consensus 76 ~i~~a~~lg~~~ 87 (213)
T PF01261_consen 76 AIDLAKRLGAKY 87 (213)
T ss_dssp HHHHHHHHTBSE
T ss_pred HHHHHHHhCCCc
Confidence 999999999874
No 186
>KOG2672|consensus
Probab=77.17 E-value=8 Score=31.63 Aligned_cols=98 Identities=20% Similarity=0.282 Sum_probs=59.2
Q ss_pred hhcCCCeEEEeeeCCCHhhhccccC-CCCHHHHHHHHHHHHHcCCCcEEEEEEEe--cCCCHHHHHHHHHHHhcCCCeEE
Q psy5052 2 KKAGLDSINISLDTLKPDKYEFITR-RKGWSRVLAGIDLAVQLGYDNLKVNVVVM--KNFNDDEILDFVLLTRDRPIDVR 78 (172)
Q Consensus 2 ~~aGl~~v~iSlds~~~e~~~~i~g-~~~~~~vl~~i~~~~~~g~~~v~in~v~~--~g~N~~ei~~l~~~a~~~g~~~~ 78 (172)
+..|||-..=-+.++. +.--.+|. +-.|++-|..++.+++..- .+.-.+.+| =|.++++|...++-.+..++++-
T Consensus 211 a~SGLDV~AHNvETVe-~Ltp~VRD~RA~yrQSL~VLk~aK~~~P-~litktsiMlglgetdeei~~tl~dLr~~~vdv~ 288 (360)
T KOG2672|consen 211 AKSGLDVYAHNVETVE-ELTPFVRDPRANYRQSLSVLKHAKEVKP-GLITKTSIMLGLGETDEEIKQTLKDLRAADVDVV 288 (360)
T ss_pred HhcCccceecchhhHH-hcchhhcCcccchHHhHHHHHHHHhhCC-CceehhhhhhccCCCHHHHHHHHHHHHHcCCcEE
Confidence 3567765544444432 22223342 2479999999999998742 322223333 35688999999999999999874
Q ss_pred -EEeeeeCCCCCCCCCCCCCHHHH
Q psy5052 79 -FIEYMPFSGNQWNNTKIMPFSEM 101 (172)
Q Consensus 79 -~i~~~p~g~~~~~~~~~~~~~e~ 101 (172)
|-.||+-..-.....+.++.+.|
T Consensus 289 t~gqym~ptkrhl~v~eyvtpekf 312 (360)
T KOG2672|consen 289 TFGQYMQPTKRHLKVKEYVTPEKF 312 (360)
T ss_pred ecccccCCccccceeEEeeCHHHH
Confidence 44677433322233455666654
No 187
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=76.78 E-value=35 Score=26.96 Aligned_cols=94 Identities=18% Similarity=0.259 Sum_probs=55.9
Q ss_pred hhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCH------HHHHHHHHHHhcCCC
Q psy5052 2 KKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFND------DEILDFVLLTRDRPI 75 (172)
Q Consensus 2 ~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~------~ei~~l~~~a~~~g~ 75 (172)
|+.|+..|.|-=|-.. ..|.+.-...+|... +-++|+.-++||. +.| +|. .+...|+++|+..|+
T Consensus 27 k~lg~s~VeiRndl~~----~~I~dg~p~a~vka~---Aek~Gl~IvSINA-lyp-Fn~wt~~~~a~a~~la~yA~acGA 97 (272)
T COG4130 27 KRLGLSKVEIRNDLPS----NAIADGTPAAEVKAL---AEKAGLTIVSINA-LYP-FNEWTEERVAEARGLADYAAACGA 97 (272)
T ss_pred HHcCcceeEEecCCCc----ccccCCCCHHHHHHH---HHHcCcEEEEeec-ccc-ccccChHHHHHHHHHHHHHHhcCC
Confidence 4566666666544332 223432245554432 3467875577885 345 664 367789999999998
Q ss_pred eEEEEeeeeCCCCCCCCCCCCCHHHHHHHHHH
Q psy5052 76 DVRFIEYMPFSGNQWNNTKIMPFSEMLTKIKE 107 (172)
Q Consensus 76 ~~~~i~~~p~g~~~~~~~~~~~~~e~~~~l~~ 107 (172)
. -.-+.|...+.|. ....+.+.+...|+.
T Consensus 98 ~--aLvlcPlNd~s~~-~~~vr~~~lv~Alka 126 (272)
T COG4130 98 K--ALVLCPLNDGSWP-GTAVRREDLVEALKA 126 (272)
T ss_pred c--eEEEEeccCCCCC-CcccchHHHHHHHHH
Confidence 6 3345677777775 345666666665554
No 188
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=76.48 E-value=30 Score=29.33 Aligned_cols=74 Identities=19% Similarity=0.185 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEecCCC---------H--------HHHHHHHHHHhcCCCeEE-EEeeeeCCCCCC
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVVVMKNFN---------D--------DEILDFVLLTRDRPIDVR-FIEYMPFSGNQW 90 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N---------~--------~ei~~l~~~a~~~g~~~~-~i~~~p~g~~~~ 90 (172)
+++...++|+.+.+.|- +. | +++.|.- . +-+..+.++|++.|..++ .+|.+|.-....
T Consensus 113 ai~~~kraId~A~eLGa-~~-v--~v~~G~~g~~~~~~~d~~~a~~~~~e~L~~lae~A~~~G~GV~laLEp~p~~~~~~ 188 (382)
T TIGR02631 113 ALRKVLRNMDLGAELGA-ET-Y--VVWGGREGAEYDGAKDVRAALDRMREALNLLAAYAEDQGYGLRFALEPKPNEPRGD 188 (382)
T ss_pred HHHHHHHHHHHHHHhCC-CE-E--EEccCCCCCcCccccCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEccCCCCCCcc
Confidence 58889999999999997 42 2 3344321 1 125567778888764443 356665421111
Q ss_pred CCCCCCCHHHHHHHHHHh
Q psy5052 91 NNTKIMPFSEMLTKIKEA 108 (172)
Q Consensus 91 ~~~~~~~~~e~~~~l~~~ 108 (172)
...-+..+.++.+++.
T Consensus 189 --~ll~T~~~al~li~~v 204 (382)
T TIGR02631 189 --ILLPTVGHALAFIETL 204 (382)
T ss_pred --eecCCHHHHHHHHHHc
Confidence 1234566666666553
No 189
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=76.28 E-value=14 Score=29.93 Aligned_cols=96 Identities=17% Similarity=0.298 Sum_probs=48.5
Q ss_pred ChhcCCCeEE----EeeeCCCHhhhccccCCC-CHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCC
Q psy5052 1 YKKAGLDSIN----ISLDTLKPDKYEFITRRK-GWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPI 75 (172)
Q Consensus 1 L~~aGl~~v~----iSlds~~~e~~~~i~g~~-~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~ 75 (172)
|++.|...|+ |++ .|-...+.+...+ .|++=++.|+.+++.|+ +++-+| +|.+|..+|.+ -|+
T Consensus 104 lk~~Gf~GV~NfPTvgl--iDG~fR~~LEe~Gmgy~~EVemi~~A~~~gl--~T~~yv----f~~e~A~~M~~----AGa 171 (268)
T PF09370_consen 104 LKELGFSGVQNFPTVGL--IDGQFRQNLEETGMGYDREVEMIRKAHEKGL--FTTAYV----FNEEQARAMAE----AGA 171 (268)
T ss_dssp HHHHT-SEEEE-S-GGG----HHHHHHHHHTT--HHHHHHHHHHHHHTT---EE--EE-----SHHHHHHHHH----HT-
T ss_pred HHHhCCceEEECCccee--eccHHHHHHHhcCCCHHHHHHHHHHHHHCCC--eeeeee----cCHHHHHHHHH----cCC
Confidence 4677777775 332 2223334444334 79999999999999997 666666 57788777764 488
Q ss_pred eEEEEee-eeCCCCCCCCCCCCCHHHHHHHHHHhC
Q psy5052 76 DVRFIEY-MPFSGNQWNNTKIMPFSEMLTKIKEAH 109 (172)
Q Consensus 76 ~~~~i~~-~p~g~~~~~~~~~~~~~e~~~~l~~~~ 109 (172)
++-...+ .-.++ .-..+...+.++-.+.+++.+
T Consensus 172 Diiv~H~GlT~gG-~~Ga~~~~sl~~a~~~~~~i~ 205 (268)
T PF09370_consen 172 DIIVAHMGLTTGG-SIGAKTALSLEEAAERIQEIF 205 (268)
T ss_dssp SEEEEE-SS-----------S--HHHHHHHHHHHH
T ss_pred CEEEecCCccCCC-CcCccccCCHHHHHHHHHHHH
Confidence 8655544 12222 111234567777655555443
No 190
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=76.01 E-value=35 Score=30.02 Aligned_cols=100 Identities=10% Similarity=0.009 Sum_probs=60.4
Q ss_pred hcCCCeEEEeeeCCCHhhhccccC--CCCHHHHHHHHHHHHHcCCCcEEEEEEE-ecCCCHHHHHHHHHHHhcCCCeEEE
Q psy5052 3 KAGLDSINISLDTLKPDKYEFITR--RKGWSRVLAGIDLAVQLGYDNLKVNVVV-MKNFNDDEILDFVLLTRDRPIDVRF 79 (172)
Q Consensus 3 ~aGl~~v~iSlds~~~e~~~~i~g--~~~~~~vl~~i~~~~~~g~~~v~in~v~-~~g~N~~ei~~l~~~a~~~g~~~~~ 79 (172)
+++.+.|.+.+-+.+.....+++. ...++.+.+.++.+++.|. .|.+..-- .+ .+.+.+.++++-+.+.|++.
T Consensus 87 ~~~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~-~v~f~~Ed~~r-~d~~~l~~~~~~~~~~Ga~~-- 162 (494)
T TIGR00973 87 PAEKFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTD-DVEFSCEDAGR-TEIPFLARIVEAAINAGATT-- 162 (494)
T ss_pred ccCCCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-eEEEEcCCCCC-CCHHHHHHHHHHHHHcCCCE--
Confidence 456778888888765554444543 1257777789999999997 66666431 23 45567888888888888862
Q ss_pred EeeeeCCCCCCCCCCCCCHHHHHHHHHHhCC
Q psy5052 80 IEYMPFSGNQWNNTKIMPFSEMLTKIKEAHP 110 (172)
Q Consensus 80 i~~~p~g~~~~~~~~~~~~~e~~~~l~~~~~ 110 (172)
+.+-.+-+ .. .+....++.+.+.+.++
T Consensus 163 i~l~DTvG-~~---~P~~~~~~i~~l~~~~~ 189 (494)
T TIGR00973 163 INIPDTVG-YA---LPAEYGNLIKGLRENVP 189 (494)
T ss_pred EEeCCCCC-CC---CHHHHHHHHHHHHHhhc
Confidence 22322211 11 12234556666666654
No 191
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=75.26 E-value=16 Score=22.20 Aligned_cols=51 Identities=22% Similarity=0.476 Sum_probs=33.8
Q ss_pred EEEecCCCHHHHHHHHHHHhcCCCeEEEE-eeeeCCCCCCCCCCCCCHHHHHHHHHHhC
Q psy5052 52 VVVMKNFNDDEILDFVLLTRDRPIDVRFI-EYMPFSGNQWNNTKIMPFSEMLTKIKEAH 109 (172)
Q Consensus 52 ~v~~~g~N~~ei~~l~~~a~~~g~~~~~i-~~~p~g~~~~~~~~~~~~~e~~~~l~~~~ 109 (172)
++++.|++..++..+++-.++.|+.+-+. -..|... .| +..++++.|.+.+
T Consensus 3 ~ll~~g~~~~el~~~l~~~r~~~~~~~~kAvlT~tN~-~W------t~~~L~~El~~Eh 54 (58)
T PF12646_consen 3 FLLFSGFSGEELDKFLDALRKAGIPIPLKAVLTPTNI-NW------TLKDLLEELKEEH 54 (58)
T ss_pred EEEECCCCHHHHHHHHHHHHHcCCCcceEEEECCCcc-cC------cHHHHHHHHHHHH
Confidence 56788899999999999999988854332 2334432 24 4666666666543
No 192
>PRK12677 xylose isomerase; Provisional
Probab=73.41 E-value=44 Score=28.34 Aligned_cols=74 Identities=22% Similarity=0.195 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEecCC---------CHH--------HHHHHHHHHhcCCCeEE-EEeeeeCCCCCC
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVVVMKNF---------NDD--------EILDFVLLTRDRPIDVR-FIEYMPFSGNQW 90 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v~~~g~---------N~~--------ei~~l~~~a~~~g~~~~-~i~~~p~g~~~~ 90 (172)
+.+.+.++|+.+.+.|-+.|. ++.|. +.. -+..+.++|++.|..++ .+|..|.-....
T Consensus 112 Ai~~~~r~IdlA~eLGa~~Vv----v~~G~~g~~~~~~~d~~~a~~~~~eaL~~l~~~A~~~G~gV~laIEpkp~ep~~~ 187 (384)
T PRK12677 112 ALRKVLRNIDLAAELGAKTYV----MWGGREGAEYDAAKDVRAALDRYREAIDLLAAYVKDQGYDLRFALEPKPNEPRGD 187 (384)
T ss_pred HHHHHHHHHHHHHHhCCCEEE----EeeCCCCccCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEccCCCCCCCC
Confidence 578899999999999974232 23331 222 24467788888664443 367776532111
Q ss_pred CCCCCCCHHHHHHHHHHh
Q psy5052 91 NNTKIMPFSEMLTKIKEA 108 (172)
Q Consensus 91 ~~~~~~~~~e~~~~l~~~ 108 (172)
...-+..+.+..+++.
T Consensus 188 --~~l~t~~~al~li~~l 203 (384)
T PRK12677 188 --ILLPTVGHALAFIATL 203 (384)
T ss_pred --eeeCCHHHHHHHHHHh
Confidence 1234566666666543
No 193
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=73.41 E-value=57 Score=28.03 Aligned_cols=102 Identities=15% Similarity=0.182 Sum_probs=64.1
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccC--CCCHHHHHHHHHHHHHcCCCcEEEEEEE-ecCCCHHHHHHHHHHHhcCCCeE
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITR--RKGWSRVLAGIDLAVQLGYDNLKVNVVV-MKNFNDDEILDFVLLTRDRPIDV 77 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g--~~~~~~vl~~i~~~~~~g~~~v~in~v~-~~g~N~~ei~~l~~~a~~~g~~~ 77 (172)
+.++|.+.|.|-+.+.+--...+++. ...++.+.+.++.+++.|+ .+.....- .+ .+.+.+.++++-+...|+.
T Consensus 85 ~~~a~~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~-~~~~~~Ed~~r-t~~~~l~~~~~~~~~~ga~- 161 (409)
T COG0119 85 LLEAGVDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGL-EVRFSAEDATR-TDPEFLAEVVKAAIEAGAD- 161 (409)
T ss_pred HHhCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-eEEEEeecccc-CCHHHHHHHHHHHHHcCCc-
Confidence 35789999998888765444444442 1368888899999999997 67753322 24 5677788888888877775
Q ss_pred EEEeeeeCCCCCCCCCCCCCHHHHHHHHHHhCC
Q psy5052 78 RFIEYMPFSGNQWNNTKIMPFSEMLTKIKEAHP 110 (172)
Q Consensus 78 ~~i~~~p~g~~~~~~~~~~~~~e~~~~l~~~~~ 110 (172)
.+.+-.+-+ .. .+....++.+.+.+..+
T Consensus 162 -~i~l~DTvG-~~---~P~~~~~~i~~l~~~v~ 189 (409)
T COG0119 162 -RINLPDTVG-VA---TPNEVADIIEALKANVP 189 (409)
T ss_pred -EEEECCCcC-cc---CHHHHHHHHHHHHHhCC
Confidence 222222211 11 12335566677776654
No 194
>COG4075 Uncharacterized conserved protein, homolog of nitrogen regulatory protein PII [Function unknown]
Probab=72.10 E-value=23 Score=24.18 Aligned_cols=65 Identities=14% Similarity=0.227 Sum_probs=44.2
Q ss_pred ChhcCCCeEE-EeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhc
Q psy5052 1 YKKAGLDSIN-ISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRD 72 (172)
Q Consensus 1 L~~aGl~~v~-iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~ 72 (172)
|.++|+..+. +-..+++|+.+.-+....+-+.++++|.-+.+. .|-|-+|+-. +-++.+.+++++
T Consensus 23 mad~GiTGFfl~eYrGvsPd~wkgf~~~EDpE~aik~i~D~s~~---AVlI~tVV~E----e~vekie~~~~E 88 (110)
T COG4075 23 MADAGITGFFLHEYRGVSPDKWKGFSKEEDPESAIKAIRDLSDK---AVLIGTVVKE----EKVEKIEELLKE 88 (110)
T ss_pred HHhcCcceEEEEEecCcChhHhcCcccccCHHHHHHHHHHhhhc---eEEEEEecCH----HHHHHHHHHHHH
Confidence 4678888765 778899999888876555678888888777654 4677766533 334455555544
No 195
>PRK15452 putative protease; Provisional
Probab=71.46 E-value=34 Score=29.74 Aligned_cols=68 Identities=15% Similarity=0.093 Sum_probs=43.3
Q ss_pred hcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHH---HHHHHHHHHhcCCCe
Q psy5052 3 KAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDD---EILDFVLLTRDRPID 76 (172)
Q Consensus 3 ~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~---ei~~l~~~a~~~g~~ 76 (172)
++|.|.|.+..++.+-..+. ..-+++.+.++++.+++.|. +|-+.+-.+. ..+ ++.+.++.+.+.|++
T Consensus 21 ~~GADaVY~G~~~~~~R~~~---~~f~~edl~eav~~ah~~g~-kvyvt~n~i~--~e~el~~~~~~l~~l~~~gvD 91 (443)
T PRK15452 21 AYGADAVYAGQPRYSLRVRN---NEFNHENLALGINEAHALGK-KFYVVVNIAP--HNAKLKTFIRDLEPVIAMKPD 91 (443)
T ss_pred HCCCCEEEECCCccchhhhc---cCCCHHHHHHHHHHHHHcCC-EEEEEecCcC--CHHHHHHHHHHHHHHHhCCCC
Confidence 57999999988876643221 22357888999999999996 5555443333 223 344455555566665
No 196
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=71.14 E-value=18 Score=25.37 Aligned_cols=51 Identities=18% Similarity=0.297 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHHH-HcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEEEE
Q psy5052 29 GWSRVLAGIDLAV-QLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRFI 80 (172)
Q Consensus 29 ~~~~vl~~i~~~~-~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~~i 80 (172)
+.+.+.++|+.+. +.|+.+-.|..+..-..-.+| +.++++++++|+.++|+
T Consensus 13 ~~~~i~~ai~~~l~~~~~~~~~i~~iasi~~K~~E-~~l~~~A~~l~~~~~~~ 64 (121)
T PF01890_consen 13 PAEEIEEAIEQALAEAGLSPRSIAAIASIDIKADE-PGLLELAEELGIPLRFF 64 (121)
T ss_dssp -HHHHHHHHHHHHHHCT--GGGEEEEEESSSSS---HHHHHHHHHCTSEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCChhhccEEEeccccCCC-HHHHHHHHHhCCCeEEE
Confidence 6899999999887 456643344444443223333 57999999999998886
No 197
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=71.05 E-value=12 Score=29.04 Aligned_cols=75 Identities=21% Similarity=0.392 Sum_probs=51.6
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccC--------------CCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCH------
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITR--------------RKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFND------ 60 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g--------------~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~------ 60 (172)
|.++|++.|-+.+-..+++.++.++. +...+.+..+++.+++.|+..+.+- .+ .|+
T Consensus 23 L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~i~i~---~~-~s~~~~~~~ 98 (237)
T PF00682_consen 23 LDEAGVDYIEVGFPFASEDDFEQVRRLREALPNARLQALCRANEEDIERAVEAAKEAGIDIIRIF---IS-VSDLHIRKN 98 (237)
T ss_dssp HHHHTTSEEEEEHCTSSHHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHHHTTSSEEEEE---EE-TSHHHHHHH
T ss_pred HHHhCCCEEEEcccccCHHHHHHhhhhhhhhcccccceeeeehHHHHHHHHHhhHhccCCEEEec---Cc-ccHHHHHHh
Confidence 46799999999987777765544421 0135666677888888998433332 33 454
Q ss_pred ---------HHHHHHHHHHhcCCCeEEE
Q psy5052 61 ---------DEILDFVLLTRDRPIDVRF 79 (172)
Q Consensus 61 ---------~ei~~l~~~a~~~g~~~~~ 79 (172)
+.+.+++++++++|..+.|
T Consensus 99 ~~~~~~~~~~~~~~~v~~ak~~g~~v~~ 126 (237)
T PF00682_consen 99 LNKSREEALERIEEAVKYAKELGYEVAF 126 (237)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHTTSEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHHhcCCceEe
Confidence 4678899999999998843
No 198
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=70.46 E-value=62 Score=26.97 Aligned_cols=72 Identities=15% Similarity=0.200 Sum_probs=39.9
Q ss_pred hhcCCCeEEEeeeC-------CCHh---hhccccCCCC-------HHHHHHHHHHHHH----cCCCcEEEEEEE----ec
Q psy5052 2 KKAGLDSINISLDT-------LKPD---KYEFITRRKG-------WSRVLAGIDLAVQ----LGYDNLKVNVVV----MK 56 (172)
Q Consensus 2 ~~aGl~~v~iSlds-------~~~e---~~~~i~g~~~-------~~~vl~~i~~~~~----~g~~~v~in~v~----~~ 56 (172)
++||.|.|.|..-. ++|- .-|+.- |+ ..+++++|+.+.- .++ +|.+.+-. -.
T Consensus 154 ~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yG--GslenR~r~~~eii~~vr~~vg~~~~~~~-~v~~R~s~~~~~~~ 230 (353)
T cd04735 154 IEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWG--GSLENRMRFPLAVVKAVQEVIDKHADKDF-ILGYRFSPEEPEEP 230 (353)
T ss_pred HHcCCCEEEEccccchHHHHhcCCccCCCCcccC--CcHHHHHHHHHHHHHHHHHHhccccCCCc-eEEEEECcccccCC
Confidence 57899998876421 2332 223221 23 3345556655543 344 45554332 12
Q ss_pred CCCHHHHHHHHHHHhcCCCe
Q psy5052 57 NFNDDEILDFVLLTRDRPID 76 (172)
Q Consensus 57 g~N~~ei~~l~~~a~~~g~~ 76 (172)
|...+|..++++.+.+.|++
T Consensus 231 g~~~ee~~~i~~~L~~~GvD 250 (353)
T cd04735 231 GIRMEDTLALVDKLADKGLD 250 (353)
T ss_pred CCCHHHHHHHHHHHHHcCCC
Confidence 44556777888888888876
No 199
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=70.40 E-value=10 Score=31.84 Aligned_cols=79 Identities=16% Similarity=0.268 Sum_probs=50.2
Q ss_pred ChhcCCCeEEEeeeCCCHhhhcccc-----CCC----CH-HHHHHHHHHHHHcCCCcEEEEEEEec-------CCC----
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFIT-----RRK----GW-SRVLAGIDLAVQLGYDNLKVNVVVMK-------NFN---- 59 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~-----g~~----~~-~~vl~~i~~~~~~g~~~v~in~v~~~-------g~N---- 59 (172)
|.++|++.|-+..-+.+++.++.++ +.. .| ....+.|+++.++|+..|.+-..+-. +.+
T Consensus 31 L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~ 110 (363)
T TIGR02090 31 LDELGVDVIEAGFPIASEGEFEAIKKISQEGLNAEICSLARALKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEV 110 (363)
T ss_pred HHHcCCCEEEEeCCCCChHHHHHHHHHHhcCCCcEEEEEcccCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHH
Confidence 4579999999987777766554432 111 12 33478899999999854444332211 012
Q ss_pred HHHHHHHHHHHhcCCCeEEE
Q psy5052 60 DDEILDFVLLTRDRPIDVRF 79 (172)
Q Consensus 60 ~~ei~~l~~~a~~~g~~~~~ 79 (172)
.+.+.+.+++|++.|..+.+
T Consensus 111 ~~~~~~~i~~ak~~G~~v~~ 130 (363)
T TIGR02090 111 LEKAVEAVEYAKEHGLIVEF 130 (363)
T ss_pred HHHHHHHHHHHHHcCCEEEE
Confidence 24466899999999988765
No 200
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=70.30 E-value=28 Score=27.40 Aligned_cols=37 Identities=3% Similarity=-0.016 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHH
Q psy5052 32 RVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLL 69 (172)
Q Consensus 32 ~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~ 69 (172)
...+.|+..++.|. +++.-.++.++...+.+..+++.
T Consensus 104 ~~~~~l~~Ik~~g~-~~kaGlalnP~Tp~~~i~~~l~~ 140 (228)
T PRK08091 104 DLALTIEWLAKQKT-TVLIGLCLCPETPISLLEPYLDQ 140 (228)
T ss_pred cHHHHHHHHHHCCC-CceEEEEECCCCCHHHHHHHHhh
Confidence 35678888889998 78889899997666677666654
No 201
>PRK15447 putative protease; Provisional
Probab=70.03 E-value=34 Score=27.92 Aligned_cols=61 Identities=10% Similarity=0.108 Sum_probs=39.8
Q ss_pred hhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEE-ecCCCHHHHHHHHHHHh
Q psy5052 2 KKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVV-MKNFNDDEILDFVLLTR 71 (172)
Q Consensus 2 ~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~-~~g~N~~ei~~l~~~a~ 71 (172)
++.|.|.|.+.....+.. ..-+.+.+.++++.++++|. .|-+.+.- ++ ..+|+..+.++..
T Consensus 25 ~~~gaDaVY~g~~~~~~R------~~f~~~~l~e~v~~~~~~gk-kvyva~p~i~~--~~~e~~~l~~~l~ 86 (301)
T PRK15447 25 ADSPVDIVYLGETVCSKR------RELKVGDWLELAERLAAAGK-EVVLSTLALVE--APSELKELRRLVE 86 (301)
T ss_pred HcCCCCEEEECCccCCCc------cCCCHHHHHHHHHHHHHcCC-EEEEEeccccc--CHHHHHHHHHHHh
Confidence 467999999986554432 12367999999999999997 67765522 22 2335444444443
No 202
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=69.88 E-value=24 Score=28.46 Aligned_cols=69 Identities=13% Similarity=0.113 Sum_probs=43.7
Q ss_pred hhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHc-CCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCe
Q psy5052 2 KKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQL-GYDNLKVNVVVMKNFNDDEILDFVLLTRDRPID 76 (172)
Q Consensus 2 ~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~-g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~ 76 (172)
+++|.|.|.|.+.+........-- .++.+.+.+-+++++++ ++ +|.+.+ . .+.+++.++++.+.+.|++
T Consensus 112 ~~~G~d~iElN~~cP~~~~~g~~~-~~~~~~~~eiv~~vr~~~~~-Pv~vKl---~-~~~~~~~~~a~~~~~~G~d 181 (296)
T cd04740 112 ADAGADAIELNISCPNVKGGGMAF-GTDPEAVAEIVKAVKKATDV-PVIVKL---T-PNVTDIVEIARAAEEAGAD 181 (296)
T ss_pred HHcCCCEEEEECCCCCCCCCcccc-cCCHHHHHHHHHHHHhccCC-CEEEEe---C-CCchhHHHHHHHHHHcCCC
Confidence 567888888777665532110000 12456666667777665 66 677663 2 3556788899989899986
No 203
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=69.43 E-value=37 Score=27.39 Aligned_cols=51 Identities=8% Similarity=0.168 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHcCCCcEE---------EEE---EEecCCCHHHHHHHHHHHh---cCCCeEEEEee
Q psy5052 31 SRVLAGIDLAVQLGYDNLK---------VNV---VVMKNFNDDEILDFVLLTR---DRPIDVRFIEY 82 (172)
Q Consensus 31 ~~vl~~i~~~~~~g~~~v~---------in~---v~~~g~N~~ei~~l~~~a~---~~g~~~~~i~~ 82 (172)
..+.+-|+.+.+.|+ +|. +++ -...|.+.++..++++-|+ +-|+..-++|-
T Consensus 116 ~~~~~~i~~l~~~gI-pV~gHiGltPq~a~~~ggy~~qgrt~~~a~~~i~~A~a~e~AGA~~ivlE~ 181 (263)
T TIGR00222 116 EWLVETVQMLTERGV-PVVGHLGLTPQSVNILGGYKVQGKDEEAAKKLLEDALALEEAGAQLLVLEC 181 (263)
T ss_pred HhHHHHHHHHHHCCC-CEEEecCCCceeEeecCCeeecCCCHHHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 334555666777776 555 332 1222455555555655554 34555545443
No 204
>COG0011 Uncharacterized conserved protein [Function unknown]
Probab=69.24 E-value=34 Score=23.44 Aligned_cols=73 Identities=15% Similarity=0.236 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHcCCCcEEEE--EEEecCCCHHHHHHHHHHHhcCCCeE---EEEeeeeCCCCCCCCCCCCCHHHHHHH
Q psy5052 30 WSRVLAGIDLAVQLGYDNLKVN--VVVMKNFNDDEILDFVLLTRDRPIDV---RFIEYMPFSGNQWNNTKIMPFSEMLTK 104 (172)
Q Consensus 30 ~~~vl~~i~~~~~~g~~~v~in--~v~~~g~N~~ei~~l~~~a~~~g~~~---~~i~~~p~g~~~~~~~~~~~~~e~~~~ 104 (172)
-+-|-++++.+++.|+ +.+++ -|++.| +.+|+.++++-+.+..... |+...+-+. +.++...++++-.+.
T Consensus 20 s~yVa~~i~~lk~~gl-ky~~~pm~T~iEg-~~del~~~ik~~~Ea~~~~g~~Rv~t~ikId---~R~d~~~t~e~Kv~~ 94 (100)
T COG0011 20 SKYVAEAIEILKESGL-KYQLGPMGTVIEG-ELDELMEAVKEAHEAVFEKGAPRVSTVIKID---ERRDKELTMEEKVKS 94 (100)
T ss_pred HHHHHHHHHHHHHcCC-ceeecCcceEEEe-cHHHHHHHHHHHHHHHHhcCCceEEEEEEee---eecCccccHHHHHHH
Confidence 4556678888899998 66666 477788 9999888887776543221 444444333 223445677766555
Q ss_pred HHH
Q psy5052 105 IKE 107 (172)
Q Consensus 105 l~~ 107 (172)
+++
T Consensus 95 v~e 97 (100)
T COG0011 95 VEE 97 (100)
T ss_pred HHH
Confidence 554
No 205
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=69.20 E-value=12 Score=33.03 Aligned_cols=52 Identities=17% Similarity=0.167 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEEEEe
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRFIE 81 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~~i~ 81 (172)
.|..+.+-|+.+++.|+ ++-|..--....++.|++.+.++++++|+.+-..+
T Consensus 341 G~~NL~~Hi~n~~~fg~-p~VVaiN~F~~Dt~~Ei~~v~~~~~~~g~~~~~~~ 392 (524)
T cd00477 341 GFANLRKHIENIKKFGV-PVVVAINKFSTDTDAELALVRKLAEEAGAFVAVSE 392 (524)
T ss_pred HHHHHHHHHHHHHHcCC-CeEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEeh
Confidence 47777778888888998 77666545555577899999999999998765543
No 206
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=69.01 E-value=36 Score=26.98 Aligned_cols=38 Identities=13% Similarity=0.159 Sum_probs=21.8
Q ss_pred ChhcCCCeEE-EeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcC
Q psy5052 1 YKKAGLDSIN-ISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLG 44 (172)
Q Consensus 1 L~~aGl~~v~-iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g 44 (172)
|+..|++.|- +-+|..++.. .-..+.++++++.+++.|
T Consensus 83 L~rL~~d~iDl~~lH~~~~~~------~~~~~~~~~~l~~l~~~G 121 (267)
T PRK11172 83 LQKLRTDYVDLTLIHWPSPND------EVSVEEFMQALLEAKKQG 121 (267)
T ss_pred HHHhCCCceEEEEeCCCCCCC------CCCHHHHHHHHHHHHHCC
Confidence 3556777775 6677654321 012455666677776666
No 207
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=68.69 E-value=54 Score=25.77 Aligned_cols=77 Identities=14% Similarity=0.125 Sum_probs=49.1
Q ss_pred ChhcCCCeEEEeeeCC--------CHhhhccccC---CCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHH
Q psy5052 1 YKKAGLDSINISLDTL--------KPDKYEFITR---RKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLL 69 (172)
Q Consensus 1 L~~aGl~~v~iSlds~--------~~e~~~~i~g---~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~ 69 (172)
|.++|+|-|..+.-|. +.|.++++.. ...+-.....++.++..|.+++.|-+.-+...|. ..++|
T Consensus 63 Lada~vdvI~Y~CtsgS~i~G~~~d~ei~~~ie~~~~v~vvTts~Avv~aL~al~a~ri~vlTPY~~evn~----~e~ef 138 (238)
T COG3473 63 LADAGVDVIVYGCTSGSLIGGPGYDKEIAQRIEEAKGVPVVTTSTAVVEALNALGAQRISVLTPYIDEVNQ----REIEF 138 (238)
T ss_pred cCccccCEEEEeccceeeecCCchhHHHHHHHHhccCCceeechHHHHHHHHhhCcceEEEeccchhhhhh----HHHHH
Confidence 5678888877655543 5666666632 2235555566666666677667777666654554 45678
Q ss_pred HhcCCCeE-EEEe
Q psy5052 70 TRDRPIDV-RFIE 81 (172)
Q Consensus 70 a~~~g~~~-~~i~ 81 (172)
....|+.+ +|.-
T Consensus 139 ~~~~Gfeiv~~~~ 151 (238)
T COG3473 139 LEANGFEIVDFKG 151 (238)
T ss_pred HHhCCeEEEEeec
Confidence 88899875 5543
No 208
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=67.73 E-value=17 Score=28.82 Aligned_cols=79 Identities=22% Similarity=0.371 Sum_probs=47.5
Q ss_pred ChhcCCCeEEEeeeCCCHhh---hccccC--CC----CHHH-HHHHHHHHHHcCCCcEEEEEEEecC-----CC------
Q psy5052 1 YKKAGLDSINISLDTLKPDK---YEFITR--RK----GWSR-VLAGIDLAVQLGYDNLKVNVVVMKN-----FN------ 59 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~---~~~i~g--~~----~~~~-vl~~i~~~~~~g~~~v~in~v~~~g-----~N------ 59 (172)
|.++|++.|-+.+-++.+.. ...+.. .+ .|.+ ..+.++.+.+.|++.+.+-+.+..- .|
T Consensus 29 L~~~Gv~~iE~g~p~~~~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~ 108 (259)
T cd07939 29 LDEAGVDEIEVGIPAMGEEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWV 108 (259)
T ss_pred HHHcCCCEEEEecCCCCHHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHH
Confidence 45789999999876664433 222321 11 2442 3678889999998544444322210 11
Q ss_pred HHHHHHHHHHHhcCCCeEEE
Q psy5052 60 DDEILDFVLLTRDRPIDVRF 79 (172)
Q Consensus 60 ~~ei~~l~~~a~~~g~~~~~ 79 (172)
.+.+.++++++++.|..+.|
T Consensus 109 ~~~~~~~i~~a~~~G~~v~~ 128 (259)
T cd07939 109 LDQLRRLVGRAKDRGLFVSV 128 (259)
T ss_pred HHHHHHHHHHHHHCCCeEEE
Confidence 13466889999999987764
No 209
>TIGR00620 sporelyase spore photoproduct lyase. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=67.57 E-value=17 Score=28.12 Aligned_cols=43 Identities=9% Similarity=0.123 Sum_probs=32.6
Q ss_pred CeEEEeeeCCCHhhhcccc-CCCCHHHHHHHHHHHHHcCCCcEEEEE
Q psy5052 7 DSINISLDTLKPDKYEFIT-RRKGWSRVLAGIDLAVQLGYDNLKVNV 52 (172)
Q Consensus 7 ~~v~iSlds~~~e~~~~i~-g~~~~~~vl~~i~~~~~~g~~~v~in~ 52 (172)
..+..||+. +++-+++- +..++++-++|++.+.++|. +|.+.+
T Consensus 48 t~~rfSlnp--~~Ii~~~E~~T~sl~~Rl~Aa~k~a~aGy-~Vg~~~ 91 (199)
T TIGR00620 48 TRFRFSINA--DYVIKNFEPGTSPLDKRIEAAVKVAKAGY-PLGFII 91 (199)
T ss_pred EEEEEEeCH--HHHHHHhcCCCCCHHHHHHHHHHHHHcCC-eEEEEe
Confidence 356677775 34545453 44589999999999999998 898885
No 210
>KOG2535|consensus
Probab=67.53 E-value=10 Score=32.02 Aligned_cols=103 Identities=17% Similarity=0.224 Sum_probs=65.4
Q ss_pred hcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCC-CH---HHHHHHHHHHhcCCCe--
Q psy5052 3 KAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNF-ND---DEILDFVLLTRDRPID-- 76 (172)
Q Consensus 3 ~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~-N~---~ei~~l~~~a~~~g~~-- 76 (172)
..|..++.|.+.|.-+++-+.-.++.....|-+....++++|+ +|-..+|++. |. .|++.+.+|..+-+..
T Consensus 244 ~YGCTRlEiGVQS~YEDVARDTNRGHTV~aVce~F~laKDaG~---KvV~HMMPdLPNVg~eRDieqF~E~FenP~FR~D 320 (554)
T KOG2535|consen 244 TYGCTRLEIGVQSVYEDVARDTNRGHTVKAVCESFHLAKDAGF---KVVAHMMPDLPNVGMERDIEQFKEYFENPAFRPD 320 (554)
T ss_pred hcCCceEEeccchhHHHhhhcccCCccHHHHHHHhhhhhccCc---eeehhhCCCCCCCchhhhHHHHHHHhcCcCcCCC
Confidence 4688899999999888775544444689999999999999998 4455566654 43 3788999998753332
Q ss_pred -EEEEe-eeeCCCC---CCCCC--CCCCHHHHHHHHHHh
Q psy5052 77 -VRFIE-YMPFSGN---QWNNT--KIMPFSEMLTKIKEA 108 (172)
Q Consensus 77 -~~~i~-~~p~g~~---~~~~~--~~~~~~e~~~~l~~~ 108 (172)
+.+.. ++--|.+ -|... ...++.++.+.+.+.
T Consensus 321 GLKiYPTLVIrGTGLyELWKtgrYk~Y~p~~LvdlvArI 359 (554)
T KOG2535|consen 321 GLKIYPTLVIRGTGLYELWKTGRYKSYSPSALVDLVARI 359 (554)
T ss_pred cceecceEEEecccHHHHHhcCCcccCCHHHHHHHHHHH
Confidence 22222 1112222 14322 245677766665543
No 211
>smart00642 Aamy Alpha-amylase domain.
Probab=67.48 E-value=34 Score=25.34 Aligned_cols=53 Identities=13% Similarity=0.192 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCcEEEEEEEecCC---------------------CHHHHHHHHHHHhcCCCeEEE
Q psy5052 27 RKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNF---------------------NDDEILDFVLLTRDRPIDVRF 79 (172)
Q Consensus 27 ~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~---------------------N~~ei~~l~~~a~~~g~~~~~ 79 (172)
.|+|+.+.+-+..+++.|++.|-+.-+.-... +.+|+.+|++-|.+.|+.+-+
T Consensus 15 ~G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vil 88 (166)
T smart00642 15 GGDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVIL 88 (166)
T ss_pred CcCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEE
Confidence 46899999999999999996555543321110 225788888888888887644
No 212
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=67.21 E-value=18 Score=31.59 Aligned_cols=58 Identities=19% Similarity=0.290 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEEEEeeeeCCC
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRFIEYMPFSG 87 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~~i~~~p~g~ 87 (172)
.|..+.+-|++.++.|+ ++-|-.--....++.|+..+.+++.++|+++-+.+....|+
T Consensus 354 G~aNL~~Hi~Nikkfgv-p~VVAIN~F~tDt~~Ei~~i~~~~~~~gv~~~ls~vwakGg 411 (554)
T COG2759 354 GFANLLKHIENIKKFGV-PVVVAINKFPTDTEAEIAAIEKLCEEHGVEVALSEVWAKGG 411 (554)
T ss_pred HHHHHHHHHHHHHHcCC-CeEEEeccCCCCCHHHHHHHHHHHHHcCCceeehhhhhccC
Confidence 47777788888888998 66554333333467799999999999999887766544443
No 213
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=67.15 E-value=22 Score=28.81 Aligned_cols=50 Identities=14% Similarity=0.233 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEecCC---------------CHHHHHHHHHHHhcCCCeEEEEee
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVVVMKNF---------------NDDEILDFVLLTRDRPIDVRFIEY 82 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v~~~g~---------------N~~ei~~l~~~a~~~g~~~~~i~~ 82 (172)
+++...+=|+.+.+.|++-+-|+ .|. .+.++++++++|++.||.+.+.--
T Consensus 30 ~t~~~k~yIDfAa~~G~eYvlvD----~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~ 94 (273)
T PF10566_consen 30 TTETQKRYIDFAAEMGIEYVLVD----AGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYH 94 (273)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEEB----TTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEec----cccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEe
Confidence 79999999999999999655553 343 345899999999999999877643
No 214
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=67.05 E-value=28 Score=29.26 Aligned_cols=79 Identities=16% Similarity=0.193 Sum_probs=46.3
Q ss_pred ChhcCCCeEEEee-eCC-------C-HhhhccccC-C----CCHHHHHHHHHHHHHcCCCcEEEEEEEec-------CCC
Q psy5052 1 YKKAGLDSINISL-DTL-------K-PDKYEFITR-R----KGWSRVLAGIDLAVQLGYDNLKVNVVVMK-------NFN 59 (172)
Q Consensus 1 L~~aGl~~v~iSl-ds~-------~-~e~~~~i~g-~----~~~~~vl~~i~~~~~~g~~~v~in~v~~~-------g~N 59 (172)
|.++|++.|-+.- =+. + +|....++. . ..+-...+.++++.++|...|.+-+.+-. +.+
T Consensus 77 L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~~~~~~~~~~l~~n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t 156 (347)
T PLN02746 77 LVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVRNLEGARFPVLTPNLKGFEAAIAAGAKEVAVFASASESFSKSNINCS 156 (347)
T ss_pred HHHcCCCEEEECCCcCcccccccccHHHHHHHHHhccCCceeEEcCCHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCC
Confidence 4678999988752 111 1 133333332 1 13444788999999999854444433211 122
Q ss_pred HH----HHHHHHHHHhcCCCeEEE
Q psy5052 60 DD----EILDFVLLTRDRPIDVRF 79 (172)
Q Consensus 60 ~~----ei~~l~~~a~~~g~~~~~ 79 (172)
.+ ++.+++++|++.|..++.
T Consensus 157 ~~e~l~~~~~~v~~Ak~~Gl~v~~ 180 (347)
T PLN02746 157 IEESLVRYREVALAAKKHSIPVRG 180 (347)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEE
Confidence 23 355899999999988753
No 215
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=67.03 E-value=51 Score=25.17 Aligned_cols=72 Identities=15% Similarity=0.188 Sum_probs=41.8
Q ss_pred hhcCCCeEEEeeeCCCHhhhccccCC---CCHHHHHHHHHHHHHc-CCCcEEEEEEEecCCCH-HHHHHHHHHHhcCCCe
Q psy5052 2 KKAGLDSINISLDTLKPDKYEFITRR---KGWSRVLAGIDLAVQL-GYDNLKVNVVVMKNFND-DEILDFVLLTRDRPID 76 (172)
Q Consensus 2 ~~aGl~~v~iSlds~~~e~~~~i~g~---~~~~~vl~~i~~~~~~-g~~~v~in~v~~~g~N~-~ei~~l~~~a~~~g~~ 76 (172)
+++|.+.|.|.+-...+...+.=.|. +..+.+.+-++..+++ ++ ++.+-+-. |... .+..++++.+.+.|++
T Consensus 77 ~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~-~v~vk~r~--~~~~~~~~~~~~~~l~~~Gvd 153 (231)
T cd02801 77 EELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPI-PVTVKIRL--GWDDEEETLELAKALEDAGAS 153 (231)
T ss_pred HhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCC-CEEEEEee--ccCCchHHHHHHHHHHHhCCC
Confidence 46799988887766544332221221 2456666667766643 44 44444322 2333 3777888888888875
No 216
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=66.86 E-value=12 Score=26.45 Aligned_cols=51 Identities=22% Similarity=0.210 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHHH-HcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEEEE
Q psy5052 29 GWSRVLAGIDLAV-QLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRFI 80 (172)
Q Consensus 29 ~~~~vl~~i~~~~-~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~~i 80 (172)
+.+.+.++|+.+. +.|+.+-.|..+..-..-.+| +.|+++++++|+.++|+
T Consensus 15 ~~e~i~~ai~~~L~~~~l~~~si~~lasi~~K~~E-~~L~~~A~~lg~pl~~~ 66 (126)
T PRK07027 15 PAEQIEAAIRAALAQRPLASADVRVVATLDLKADE-AGLLALCARHGWPLRAF 66 (126)
T ss_pred CHHHHHHHHHHHHHHcCCCHHHhheeEehhhhcCC-HHHHHHHHHhCCCeEEe
Confidence 6889999999887 567744444444443222223 56889999999999887
No 217
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=66.83 E-value=51 Score=28.87 Aligned_cols=89 Identities=20% Similarity=0.187 Sum_probs=51.5
Q ss_pred hcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEE--EEecCCCHHHHHHHHHHHhcCCCeEEEE
Q psy5052 3 KAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNV--VVMKNFNDDEILDFVLLTRDRPIDVRFI 80 (172)
Q Consensus 3 ~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~--v~~~g~N~~ei~~l~~~a~~~g~~~~~i 80 (172)
++|++.+.|... ++ .++.+..+++.+++.|. .+.... +..+-.+.+.+.++++-+.+.|++. |
T Consensus 106 ~~Gvd~irif~~-ln-----------d~~n~~~~i~~ak~~G~-~v~~~i~~t~~p~~t~e~~~~~a~~l~~~Gad~--I 170 (467)
T PRK14041 106 EYGLDIIRIFDA-LN-----------DIRNLEKSIEVAKKHGA-HVQGAISYTVSPVHTLEYYLEFARELVDMGVDS--I 170 (467)
T ss_pred HCCcCEEEEEEe-CC-----------HHHHHHHHHHHHHHCCC-EEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCE--E
Confidence 456666665443 22 25677888999999997 676443 3333346666777777777888863 2
Q ss_pred eeeeCCCCCCCCCCCCCHHHHHHHHHHhCC
Q psy5052 81 EYMPFSGNQWNNTKIMPFSEMLTKIKEAHP 110 (172)
Q Consensus 81 ~~~p~g~~~~~~~~~~~~~e~~~~l~~~~~ 110 (172)
.+-.+-+. . .+....++.+.|++.++
T Consensus 171 ~i~Dt~G~-l---~P~~v~~Lv~~lk~~~~ 196 (467)
T PRK14041 171 CIKDMAGL-L---TPKRAYELVKALKKKFG 196 (467)
T ss_pred EECCccCC-c---CHHHHHHHHHHHHHhcC
Confidence 22222221 1 12234556667776663
No 218
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=64.43 E-value=57 Score=25.40 Aligned_cols=80 Identities=20% Similarity=0.274 Sum_probs=47.2
Q ss_pred ChhcCCCeEEEeeeCCC------Hhhhc---cccCCC------CHHHH-HHHHHHHHHcCCCcEEEEEEEe---------
Q psy5052 1 YKKAGLDSINISLDTLK------PDKYE---FITRRK------GWSRV-LAGIDLAVQLGYDNLKVNVVVM--------- 55 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~------~e~~~---~i~g~~------~~~~v-l~~i~~~~~~g~~~v~in~v~~--------- 55 (172)
|.++|++.|.+..=... ++.++ .++... .+-+. .+.++.+.+.|+..+.+-....
T Consensus 28 L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~ 107 (265)
T cd03174 28 LDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAGVDEVRIFDSASETHSRKNLN 107 (265)
T ss_pred HHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCCcCEEEEEEecCHHHHHHHhC
Confidence 45788888887655443 23222 222211 12222 6778888899875455444332
Q ss_pred cCC--CHHHHHHHHHHHhcCCCeEEEE
Q psy5052 56 KNF--NDDEILDFVLLTRDRPIDVRFI 80 (172)
Q Consensus 56 ~g~--N~~ei~~l~~~a~~~g~~~~~i 80 (172)
++. +.+.+.+.++++++.|..+.+.
T Consensus 108 ~~~~~~~~~~~~~i~~a~~~G~~v~~~ 134 (265)
T cd03174 108 KSREEDLENAEEAIEAAKEAGLEVEGS 134 (265)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 110 3456888999999999876553
No 219
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=64.38 E-value=42 Score=26.76 Aligned_cols=79 Identities=11% Similarity=0.170 Sum_probs=51.9
Q ss_pred hhcCCCeEEEeeeCCCHh---------hhccccCCCCHHHHHHHHHHHHHc--CCCcEEEEEEEecCCCH---HHHHHHH
Q psy5052 2 KKAGLDSINISLDTLKPD---------KYEFITRRKGWSRVLAGIDLAVQL--GYDNLKVNVVVMKNFND---DEILDFV 67 (172)
Q Consensus 2 ~~aGl~~v~iSlds~~~e---------~~~~i~g~~~~~~vl~~i~~~~~~--g~~~v~in~v~~~g~N~---~ei~~l~ 67 (172)
.++|.|.+-|-+-..||- ..+.+..+-+++++++.++.+++. .+ ++-+.+. .|. --+++++
T Consensus 34 ~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~-plv~m~Y----~Npi~~~G~e~f~ 108 (256)
T TIGR00262 34 IEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNI-PIGLLTY----YNLIFRKGVEEFY 108 (256)
T ss_pred HHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC-CEEEEEe----ccHHhhhhHHHHH
Confidence 467888888888766652 233344444799999999999864 55 5433332 343 1357788
Q ss_pred HHHhcCCCeEEEEeeeeC
Q psy5052 68 LLTRDRPIDVRFIEYMPF 85 (172)
Q Consensus 68 ~~a~~~g~~~~~i~~~p~ 85 (172)
+.+++.|++.-++...|.
T Consensus 109 ~~~~~aGvdgviipDlp~ 126 (256)
T TIGR00262 109 AKCKEVGVDGVLVADLPL 126 (256)
T ss_pred HHHHHcCCCEEEECCCCh
Confidence 888999998666554443
No 220
>PF08032 SpoU_sub_bind: RNA 2'-O ribose methyltransferase substrate binding; InterPro: IPR013123 Most cellular RNAs undergo a number of post-transcriptional nucleoside modifications. While the biological role of many of these modifications is unknown, some have been shown to be necessary for cell growth or for resistance to antibiotics [, ]. One of the most common modifications is 2'O-ribose methylation catalysed by the RNA 2'O-ribose methyltransferases, a large enzyme family that transfer a methyl group from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of the backbone ribose []. This entry represents a substrate-binding domain found in a variety of bacterial and mitochondrial RNA 2'-O ribose methyltransferases. These include the bacterial enzyme RlmB, which specifically methylates the conserved nucleotide guanosine 2251 in 23S RNA, and PET56, which specifically methylates the equivalent guanosine in mitochondrial 21S RNA [, ]. This domain forms a four-stranded mixed beta sheet similar to that found in other RNA binding enzymes []. It shows considerable conformational flexibility which is thought to be important for its ability to bind RNA.; GO: 0008168 methyltransferase activity; PDB: 1GZ0_D 1IPA_A.
Probab=64.00 E-value=25 Score=21.82 Aligned_cols=43 Identities=19% Similarity=0.293 Sum_probs=26.5
Q ss_pred HHHHHHHHcCCCcEEEEE-EEecCCCHHHHHHHHHHHhcCCCeEEEE
Q psy5052 35 AGIDLAVQLGYDNLKVNV-VVMKNFNDDEILDFVLLTRDRPIDVRFI 80 (172)
Q Consensus 35 ~~i~~~~~~g~~~v~in~-v~~~g~N~~ei~~l~~~a~~~g~~~~~i 80 (172)
+.+..+.+++. + +.. .+.++.++..+.++++.+++.|+.+...
T Consensus 6 ~~V~eaL~~~~-~--i~~l~~~~~~~~~~~~~i~~~~~~~~i~v~~v 49 (76)
T PF08032_consen 6 HAVEEALKSGP-R--IKKLFVTEEKADKRIKEILKLAKKKGIPVYEV 49 (76)
T ss_dssp HHHHHHHHCTG-G--EEEEEEETT---CCTHHHHHHHHHCT-EEEEE
T ss_pred HHHHHHHcCCC-C--ccEEEEEcCccchhHHHHHHHHHHcCCeEEEe
Confidence 45666777775 5 333 3445434556889999999999887654
No 221
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=63.85 E-value=17 Score=30.77 Aligned_cols=76 Identities=21% Similarity=0.400 Sum_probs=49.7
Q ss_pred ChhcCCCeEEEeeeCCCHhhhcc---ccC--CC----CHHHH-HHHHHHHHHcCCCcEEEEEEEecCCCH----------
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEF---ITR--RK----GWSRV-LAGIDLAVQLGYDNLKVNVVVMKNFND---------- 60 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~---i~g--~~----~~~~v-l~~i~~~~~~g~~~v~in~v~~~g~N~---------- 60 (172)
|.++|++.|-+..-++.++.++. +.. .. .|-+. .+.|+.+.++|+..|.+-+ + .++
T Consensus 35 L~~~GV~~IE~G~p~~~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i~i~~---~-~Sd~h~~~~~~~s 110 (378)
T PRK11858 35 LDEIGVDQIEAGFPAVSEDEKEAIKAIAKLGLNASILALNRAVKSDIDASIDCGVDAVHIFI---A-TSDIHIKHKLKKT 110 (378)
T ss_pred HHHhCCCEEEEeCCCcChHHHHHHHHHHhcCCCeEEEEEcccCHHHHHHHHhCCcCEEEEEE---c-CCHHHHHHHhCCC
Confidence 46899999999887777654333 321 11 24333 6789999999984333332 2 343
Q ss_pred -----HHHHHHHHHHhcCCCeEEEE
Q psy5052 61 -----DEILDFVLLTRDRPIDVRFI 80 (172)
Q Consensus 61 -----~ei~~l~~~a~~~g~~~~~i 80 (172)
+.+.+.+++|++.|..+.+.
T Consensus 111 ~~~~l~~~~~~v~~a~~~G~~v~~~ 135 (378)
T PRK11858 111 REEVLERMVEAVEYAKDHGLYVSFS 135 (378)
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 44677999999999887663
No 222
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=63.68 E-value=61 Score=26.80 Aligned_cols=37 Identities=19% Similarity=0.300 Sum_probs=23.2
Q ss_pred ChhcCCCeEE-EeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCC
Q psy5052 1 YKKAGLDSIN-ISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGY 45 (172)
Q Consensus 1 L~~aGl~~v~-iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~ 45 (172)
|+..|+++|- +.+|..++. ..++.++++++.+++.|.
T Consensus 124 L~rLg~d~iDl~~lH~~~~~--------~~~~e~~~al~~l~~~Gk 161 (346)
T PRK09912 124 LKRMGLEYVDIFYSHRVDEN--------TPMEETASALAHAVQSGK 161 (346)
T ss_pred HHHHCCCcEEEEEeCCCCCC--------CCHHHHHHHHHHHHHcCC
Confidence 3556777665 666765431 136677777777777763
No 223
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=63.19 E-value=18 Score=28.94 Aligned_cols=80 Identities=16% Similarity=0.225 Sum_probs=48.8
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccc---c--C--CC--C-HHHHHHHHHHHHHcCCCcEEEEEEEec-------CCCHH--
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFI---T--R--RK--G-WSRVLAGIDLAVQLGYDNLKVNVVVMK-------NFNDD-- 61 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i---~--g--~~--~-~~~vl~~i~~~~~~g~~~v~in~v~~~-------g~N~~-- 61 (172)
|.++|++.|.+.--+..|+..+.+ . + .. . .....+.++.+.++|++.|.+-+.+-. +.+.+
T Consensus 31 L~~~Gv~~IEvG~P~~~~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~ 110 (262)
T cd07948 31 LDAFGVDYIELTSPAASPQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVETGVDGVDLVFGTSPFLREASHGKSITEI 110 (262)
T ss_pred HHHcCCCEEEEECCCCCHHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHH
Confidence 468999999987666666544322 1 1 11 1 234467899999999853444332211 12223
Q ss_pred --HHHHHHHHHhcCCCeEEEE
Q psy5052 62 --EILDFVLLTRDRPIDVRFI 80 (172)
Q Consensus 62 --ei~~l~~~a~~~g~~~~~i 80 (172)
.+.++++++++.|..+.+.
T Consensus 111 ~~~~~~~i~~a~~~G~~v~~~ 131 (262)
T cd07948 111 IESAVEVIEFVKSKGIEVRFS 131 (262)
T ss_pred HHHHHHHHHHHHHCCCeEEEE
Confidence 4667889999999877664
No 224
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=62.62 E-value=9.3 Score=34.00 Aligned_cols=50 Identities=14% Similarity=0.107 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEEEE
Q psy5052 30 WSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRFI 80 (172)
Q Consensus 30 ~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~~i 80 (172)
|..+.+-|+.+++.|+ ++-|-.=-....++.|++.+.++|+++|+.+-..
T Consensus 357 ~~NL~rHIeNik~fGv-pvVVAIN~F~tDT~aEi~~I~~~~~~~Gv~~avs 406 (557)
T PF01268_consen 357 FANLERHIENIKKFGV-PVVVAINRFPTDTDAEIELIRELCEELGVRAAVS 406 (557)
T ss_dssp HHHHHHHHHHHHCTT---EEEEEE--TTS-HHHHHHHHHHCCCCCEEEEEC
T ss_pred HHHHHHHHHHHHhcCC-CeEEEecCCCCCCHHHHHHHHHHHHhCCCCEEEe
Confidence 6777777777777888 6555544455456789999999999999875443
No 225
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=62.53 E-value=31 Score=30.92 Aligned_cols=51 Identities=18% Similarity=0.078 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEEEEe
Q psy5052 30 WSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRFIE 81 (172)
Q Consensus 30 ~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~~i~ 81 (172)
|..+.+-|+++++.|+ ++-|..--....++.|+..+.+++++.|+.+-..+
T Consensus 387 ~~NL~~Hi~n~~~fg~-pvVVaiN~F~~Dt~~Ei~~l~~~~~~~g~~~~v~~ 437 (587)
T PRK13507 387 CANLLHHIGTVKKSGI-NPVVCINAFYTDTHAEIAIVRRLAEQAGARVAVSR 437 (587)
T ss_pred HHHHHHHHHHHHHcCC-CeEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEec
Confidence 5666667777788898 76666545554577899999999999998755443
No 226
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=61.28 E-value=80 Score=25.79 Aligned_cols=75 Identities=11% Similarity=0.077 Sum_probs=41.6
Q ss_pred hhcCCCeEEEeeeCCCHhhhccccCC---CCHHHHHHHHHHHHH-cCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeE
Q psy5052 2 KKAGLDSINISLDTLKPDKYEFITRR---KGWSRVLAGIDLAVQ-LGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDV 77 (172)
Q Consensus 2 ~~aGl~~v~iSlds~~~e~~~~i~g~---~~~~~vl~~i~~~~~-~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~ 77 (172)
+++|.|.|.|.+-...+..-++-.|. ...+.+.+-++..++ .++ +|.+-+.+--..+..+..++++.+.+.|++.
T Consensus 85 ~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~-pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~ 163 (319)
T TIGR00737 85 EELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDI-PVTVKIRIGWDDAHINAVEAARIAEDAGAQA 163 (319)
T ss_pred HhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCC-CEEEEEEcccCCCcchHHHHHHHHHHhCCCE
Confidence 46899988887765433222222121 124566666666654 466 6666643311012235667888888888863
No 227
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=60.75 E-value=48 Score=28.02 Aligned_cols=72 Identities=15% Similarity=0.178 Sum_probs=39.2
Q ss_pred hhcCCCeEEEee-e-CC---------CHhhhccccCCCCHH-------HHHHHHHHHHHcCCCcEEEEEEE---------
Q psy5052 2 KKAGLDSINISL-D-TL---------KPDKYEFITRRKGWS-------RVLAGIDLAVQLGYDNLKVNVVV--------- 54 (172)
Q Consensus 2 ~~aGl~~v~iSl-d-s~---------~~e~~~~i~g~~~~~-------~vl~~i~~~~~~g~~~v~in~v~--------- 54 (172)
++||.|.|.|.- + +- ....-|+. | ++++ +++++|++..-.++ +|.+.+-.
T Consensus 160 ~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDey-G-GslenR~rf~~eii~~vr~~~g~~f-~v~vri~~~~~~~~~~~ 236 (382)
T cd02931 160 KEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKY-G-GSLENRLRFAIEIVEEIKARCGEDF-PVSLRYSVKSYIKDLRQ 236 (382)
T ss_pred HHcCCCEEEEeccccChHHHHhcCCccCCCCCcC-C-CCHHHHhHHHHHHHHHHHHhcCCCc-eEEEEEechhhcccccc
Confidence 579999998876 4 42 11222332 2 3443 45555554433344 55554432
Q ss_pred ---------ecCCCHHHHHHHHHHHhcCCCe
Q psy5052 55 ---------MKNFNDDEILDFVLLTRDRPID 76 (172)
Q Consensus 55 ---------~~g~N~~ei~~l~~~a~~~g~~ 76 (172)
-.|.+.+|..++++.+.+.|++
T Consensus 237 ~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD 267 (382)
T cd02931 237 GALPGEEFQEKGRDLEEGLKAAKILEEAGYD 267 (382)
T ss_pred ccccccccccCCCCHHHHHHHHHHHHHhCCC
Confidence 1134456666788888788875
No 228
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=59.53 E-value=59 Score=25.58 Aligned_cols=36 Identities=28% Similarity=0.350 Sum_probs=22.0
Q ss_pred hhcCCCeEE-EeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcC
Q psy5052 2 KKAGLDSIN-ISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLG 44 (172)
Q Consensus 2 ~~aGl~~v~-iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g 44 (172)
++.|++.+- +-||..+.... ....++++++.+++.|
T Consensus 104 ~~L~~~~iDl~~lh~~~~~~~-------~~~~~~~~l~~l~~~G 140 (285)
T cd06660 104 KRLGTDYIDLYLLHWPDPDTP-------DIEETLRALEELVKEG 140 (285)
T ss_pred HHhCCCceeEEEecCCCCCCC-------CHHHHHHHHHHHHHcC
Confidence 455666664 55665443211 3677788888888777
No 229
>smart00642 Aamy Alpha-amylase domain.
Probab=59.44 E-value=24 Score=26.14 Aligned_cols=55 Identities=22% Similarity=0.212 Sum_probs=37.2
Q ss_pred ChhcCCCeEEEeee-----------CCCHhhhcccc-CCCCHHHHHHHHHHHHHcCCCcEEEEEEEec
Q psy5052 1 YKKAGLDSINISLD-----------TLKPDKYEFIT-RRKGWSRVLAGIDLAVQLGYDNLKVNVVVMK 56 (172)
Q Consensus 1 L~~aGl~~v~iSld-----------s~~~e~~~~i~-g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~ 56 (172)
|++.|++.|.++== +-++.-|..+. .-|+.++..+.++++++.|+ .|-+-+|+.-
T Consensus 28 l~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi-~vilD~V~NH 94 (166)
T smart00642 28 LKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGI-KVILDVVINH 94 (166)
T ss_pred HHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCC-EEEEEECCCC
Confidence 56788888875432 11222333443 23577888999999999999 7888887754
No 230
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=59.43 E-value=79 Score=25.13 Aligned_cols=67 Identities=12% Similarity=0.162 Sum_probs=43.4
Q ss_pred HHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEEEEeeeeCCCCCCCCCCCCCHHHHHHHHHH
Q psy5052 36 GIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRFIEYMPFSGNQWNNTKIMPFSEMLTKIKE 107 (172)
Q Consensus 36 ~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~~i~~~p~g~~~~~~~~~~~~~e~~~~l~~ 107 (172)
-++.+++.|+..|.|+--.+. ++.++...+++.+++.|..+.. | +|......+..++..+.++.+++
T Consensus 76 Yl~~~k~lGf~~IEiS~G~~~-i~~~~~~rlI~~~~~~g~~v~~-E---vG~K~~~~~~~~~~~~~i~~~~~ 142 (237)
T TIGR03849 76 YLNECDELGFEAVEISDGSME-ISLEERCNLIERAKDNGFMVLS-E---VGKKSPEKDSELTPDDRIKLINK 142 (237)
T ss_pred HHHHHHHcCCCEEEEcCCccC-CCHHHHHHHHHHHHhCCCeEec-c---ccccCCcccccCCHHHHHHHHHH
Confidence 345778889877888766566 7888888999999988865432 1 23321122335677777777643
No 231
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=58.71 E-value=1e+02 Score=26.56 Aligned_cols=69 Identities=13% Similarity=0.105 Sum_probs=46.2
Q ss_pred cCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCC-------HHHHHHHHHHHhcCCCe
Q psy5052 4 AGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFN-------DDEILDFVLLTRDRPID 76 (172)
Q Consensus 4 aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N-------~~ei~~l~~~a~~~g~~ 76 (172)
.|+..+.|++++.+ .| .-+++.+.++++.+.+.|. +++.-++..+ .| .+++.++++||++.++.
T Consensus 165 ~g~~vv~v~~~~~~--~f-----~~~~~~le~a~~~a~~~~~-~vk~lll~nP-~NPtG~~~s~e~l~~l~~~~~~~~i~ 235 (447)
T PLN02607 165 TGVKIVPIHCDSSN--NF-----QVTPQALEAAYQEAEAANI-RVRGVLITNP-SNPLGATVQRSVLEDILDFVVRKNIH 235 (447)
T ss_pred CCcEEEEEeCCCCC--CC-----cCCHHHHHHHHHHHHHhCC-CeeEEEEeCC-CCCcCcccCHHHHHHHHHHHHHCCCE
Confidence 46666667766432 11 1256777777777888887 7776655555 45 35799999999999987
Q ss_pred EEEEe
Q psy5052 77 VRFIE 81 (172)
Q Consensus 77 ~~~i~ 81 (172)
+-.-|
T Consensus 236 lI~DE 240 (447)
T PLN02607 236 LVSDE 240 (447)
T ss_pred EEEec
Confidence 65444
No 232
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=58.34 E-value=45 Score=25.36 Aligned_cols=46 Identities=24% Similarity=0.289 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHHHHc--CCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCe
Q psy5052 29 GWSRVLAGIDLAVQL--GYDNLKVNVVVMKNFNDDEILDFVLLTRDRPID 76 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~--g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~ 76 (172)
.++.+++-|..+.++ |+ ++++.+-.-. .+++++....+.+.+.|++
T Consensus 99 ~~~~~~~ei~~v~~~~~g~-~lkvI~e~~~-l~~~~i~~a~ria~e~GaD 146 (203)
T cd00959 99 DYEAVYEEIAAVVEACGGA-PLKVILETGL-LTDEEIIKACEIAIEAGAD 146 (203)
T ss_pred CHHHHHHHHHHHHHhcCCC-eEEEEEecCC-CCHHHHHHHHHHHHHhCCC
Confidence 355566666655543 55 5666332222 4566777777777777776
No 233
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=58.22 E-value=89 Score=24.50 Aligned_cols=74 Identities=8% Similarity=0.177 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEecC--CCHH--------HHHHHHHHHhcCCCeEEEEeeeeCCCCCCCCCCCCCH
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVVVMKN--FNDD--------EILDFVLLTRDRPIDVRFIEYMPFSGNQWNNTKIMPF 98 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v~~~g--~N~~--------ei~~l~~~a~~~g~~~~~i~~~p~g~~~~~~~~~~~~ 98 (172)
.++.+.+.|+.+...|.+.+.+.. ...+ ...+ -+..+.++|++.|+.+-+-...|.... ..-+.
T Consensus 88 ~~~~~~~~i~~a~~lGa~~i~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~~~~~~~~-----~~~t~ 161 (275)
T PRK09856 88 SLDMIKLAMDMAKEMNAGYTLISA-AHAGYLTPPNVIWGRLAENLSELCEYAENIGMDLILEPLTPYESN-----VVCNA 161 (275)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEecCCCCccc-----ccCCH
Confidence 467778888999998974232221 1111 1111 377899999999987654323333211 12356
Q ss_pred HHHHHHHHHh
Q psy5052 99 SEMLTKIKEA 108 (172)
Q Consensus 99 ~e~~~~l~~~ 108 (172)
+++.+.++..
T Consensus 162 ~~~~~l~~~~ 171 (275)
T PRK09856 162 NDVLHALALV 171 (275)
T ss_pred HHHHHHHHHc
Confidence 6776766653
No 234
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=58.09 E-value=46 Score=26.84 Aligned_cols=48 Identities=15% Similarity=0.130 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHcCCCcEE---------E----EEEEecCCCHHHHHHHHHHHh---cCCCeEEEEe
Q psy5052 32 RVLAGIDLAVQLGYDNLK---------V----NVVVMKNFNDDEILDFVLLTR---DRPIDVRFIE 81 (172)
Q Consensus 32 ~vl~~i~~~~~~g~~~v~---------i----n~v~~~g~N~~ei~~l~~~a~---~~g~~~~~i~ 81 (172)
...+-|+++.++|+ +|. + .+.+ .|.+++++.++++-++ +-|+..-|+|
T Consensus 118 ~~~~~I~al~~agI-pV~gHiGL~pq~~~~~gg~~i-~grt~~~a~~~i~ra~a~~eAGA~~i~lE 181 (264)
T PRK00311 118 EVAETIKRLVERGI-PVMGHLGLTPQSVNVLGGYKV-QGRDEEAAEKLLEDAKALEEAGAFALVLE 181 (264)
T ss_pred HHHHHHHHHHHCCC-CEeeeecccceeecccCCeee-ecCCHHHHHHHHHHHHHHHHCCCCEEEEc
Confidence 44566666667776 542 1 1222 3445555555555544 3566555543
No 235
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=58.00 E-value=70 Score=26.28 Aligned_cols=53 Identities=9% Similarity=0.066 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHcCC--CcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEEEEee
Q psy5052 30 WSRVLAGIDLAVQLGY--DNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRFIEY 82 (172)
Q Consensus 30 ~~~vl~~i~~~~~~g~--~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~~i~~ 82 (172)
-+.+++-|+.+++.|+ .-|.+...+..+...+++.+.++...++|..+.+-|+
T Consensus 187 ~~~~~~lv~~l~~~gvpIdgIG~Q~H~~~~~~~~~i~~~l~~~~~~Gl~i~ITEl 241 (320)
T PF00331_consen 187 RDAYLNLVKDLKARGVPIDGIGLQSHFDAGYPPEQIWNALDRFASLGLPIHITEL 241 (320)
T ss_dssp HHHHHHHHHHHHHTTHCS-EEEEEEEEETTSSHHHHHHHHHHHHTTTSEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCccceechhhccCCCCCHHHHHHHHHHHHHcCCceEEEee
Confidence 4667888888888875 2378888888766667899999888999999888877
No 236
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=57.60 E-value=22 Score=29.81 Aligned_cols=72 Identities=21% Similarity=0.369 Sum_probs=48.7
Q ss_pred ChhcCCCeEEEeeeCCCHh-hhccccCC-------C-CHHHHHHHHHHHHHcCCCcEEEEEEEecCCCH---HHHHHHHH
Q psy5052 1 YKKAGLDSINISLDTLKPD-KYEFITRR-------K-GWSRVLAGIDLAVQLGYDNLKVNVVVMKNFND---DEILDFVL 68 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e-~~~~i~g~-------~-~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~---~ei~~l~~ 68 (172)
|.++|-+-|.|+++..... .+.+|..+ + .|+ -+-+-.+-+.|+..+.|| || |. +.+.++++
T Consensus 45 L~~aG~dIVRvtv~~~e~A~A~~~Ik~~~~vPLVaDiHf~--~rla~~~~~~g~~k~RIN----PG-Nig~~~~v~~vVe 117 (361)
T COG0821 45 LERAGCDIVRVTVPDMEAAEALKEIKQRLNVPLVADIHFD--YRLALEAAECGVDKVRIN----PG-NIGFKDRVREVVE 117 (361)
T ss_pred HHHcCCCEEEEecCCHHHHHHHHHHHHhCCCCEEEEeecc--HHHHHHhhhcCcceEEEC----Cc-ccCcHHHHHHHHH
Confidence 5689999999999987653 34445321 1 244 333334445666567777 65 43 46999999
Q ss_pred HHhcCCCeEEE
Q psy5052 69 LTRDRPIDVRF 79 (172)
Q Consensus 69 ~a~~~g~~~~~ 79 (172)
.|++.|..+|.
T Consensus 118 ~Ak~~g~piRI 128 (361)
T COG0821 118 AAKDKGIPIRI 128 (361)
T ss_pred HHHHcCCCEEE
Confidence 99999988775
No 237
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=57.41 E-value=98 Score=24.73 Aligned_cols=43 Identities=19% Similarity=0.248 Sum_probs=29.1
Q ss_pred HHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEEE
Q psy5052 34 LAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRF 79 (172)
Q Consensus 34 l~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~~ 79 (172)
.+.++.+.+.|+..+.+.+ +-...+++.++++++++.|..+.+
T Consensus 85 ~~~l~~a~~~gv~~iri~~---~~~~~~~~~~~i~~ak~~G~~v~~ 127 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAF---HKHEFDEALPLIKAIKEKGYEVFF 127 (266)
T ss_pred HHHHHHHhcCCcCEEEEec---ccccHHHHHHHHHHHHHCCCeEEE
Confidence 4556666677774344433 213567888999999999987665
No 238
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=57.00 E-value=60 Score=25.74 Aligned_cols=70 Identities=11% Similarity=0.166 Sum_probs=36.1
Q ss_pred HHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEEEEeeeeCCCCCCCCCCCCCHHHHHHHHHH
Q psy5052 33 VLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRFIEYMPFSGNQWNNTKIMPFSEMLTKIKE 107 (172)
Q Consensus 33 vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~~i~~~p~g~~~~~~~~~~~~~e~~~~l~~ 107 (172)
|-+=++.|.+.|+..+.|+.-.++ .|.++...+++-+.+-|..+ +--+|...-.....+++++..+.+..
T Consensus 92 vdeyl~e~~~lGfe~iEIS~G~i~-m~~eek~~lIe~a~d~Gf~v----lsEvGkk~~e~~~~l~~~d~~k~i~~ 161 (258)
T COG1809 92 VDEYLNEAKELGFEAIEISNGTIP-MSTEEKCRLIERAVDEGFMV----LSEVGKKDPESDSALSPDDRVKLIND 161 (258)
T ss_pred HHHHHHHHHHcCccEEEecCCeee-cchHHHHHHHHHHHhcccEE----ehhhcccCcchhhhcChHHHHHHHHH
Confidence 334445555666655566654444 56666666666666655432 11223211122345677776666554
No 239
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=56.85 E-value=25 Score=28.70 Aligned_cols=52 Identities=12% Similarity=0.096 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEEEE
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRFI 80 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~~i 80 (172)
+.+++++.++.+.+.|+..+.+..-..+..+.+.+.++++..++...++.+.
T Consensus 37 s~eeI~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~i~~~Ik~~~~~i~~~ 88 (309)
T TIGR00423 37 SLEEILEKVKEAVAKGATEVCIQGGLNPQLDIEYYEELFRAIKQEFPDVHIH 88 (309)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCceEE
Confidence 6788888888888888754444322222234455677777777654344433
No 240
>KOG0258|consensus
Probab=56.79 E-value=46 Score=28.68 Aligned_cols=50 Identities=16% Similarity=0.215 Sum_probs=40.0
Q ss_pred cCCC-CHHHHHHHHHHHHHcCCCcEEEEEEEecCCCH-------HHHHHHHHHHhcCCCeE
Q psy5052 25 TRRK-GWSRVLAGIDLAVQLGYDNLKVNVVVMKNFND-------DEILDFVLLTRDRPIDV 77 (172)
Q Consensus 25 ~g~~-~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~-------~ei~~l~~~a~~~g~~~ 77 (172)
++++ ..+++.++++.++ .|+ ++++-+|+.+| |- +.|+++++||.+.|.-+
T Consensus 194 ~~W~ld~~el~~~~~eA~-k~i-~~r~lvvINPG-NPTGqvls~e~ie~i~~fa~~~~l~l 251 (475)
T KOG0258|consen 194 SNWSLDVAELERSVDEAR-KGI-NPRALVVINPG-NPTGQVLSEENIEGIICFAAEEGLVL 251 (475)
T ss_pred cCCCCCHHHHHHHHHHHh-ccC-CceEEEEECCC-CccchhhcHHHHHHHHHHHHHcCeEE
Confidence 3443 6888888899988 788 79999999997 53 35999999999988643
No 241
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=56.38 E-value=67 Score=26.74 Aligned_cols=70 Identities=11% Similarity=0.136 Sum_probs=37.2
Q ss_pred hhcCCCeEEEeeeCC---------CHh---hhccccCCCC----HHHHHHHHHHHHHc-C--CCcEEEEEEEe----cCC
Q psy5052 2 KKAGLDSINISLDTL---------KPD---KYEFITRRKG----WSRVLAGIDLAVQL-G--YDNLKVNVVVM----KNF 58 (172)
Q Consensus 2 ~~aGl~~v~iSlds~---------~~e---~~~~i~g~~~----~~~vl~~i~~~~~~-g--~~~v~in~v~~----~g~ 58 (172)
+++|.|.|.| ++. +|. .-|+. +|+ .+.+++-++.++++ | + .|.+.+... .|.
T Consensus 147 ~~aGfDgVei--h~ahGyLl~qFlsp~~N~RtD~y--GGslenR~r~~~eiv~aIR~~vG~d~-~v~iRi~~~D~~~~g~ 221 (353)
T cd02930 147 REAGYDGVEI--MGSEGYLINQFLAPRTNKRTDEW--GGSFENRMRFPVEIVRAVRAAVGEDF-IIIYRLSMLDLVEGGS 221 (353)
T ss_pred HHcCCCEEEE--ecccchHHHHhcCCccCCCcCcc--CCCHHHHhHHHHHHHHHHHHHcCCCc-eEEEEecccccCCCCC
Confidence 5799999988 552 332 12222 123 34444445555432 3 4 455444322 233
Q ss_pred CHHHHHHHHHHHhcCCCe
Q psy5052 59 NDDEILDFVLLTRDRPID 76 (172)
Q Consensus 59 N~~ei~~l~~~a~~~g~~ 76 (172)
+.+|..++++...+.|++
T Consensus 222 ~~~e~~~i~~~Le~~G~d 239 (353)
T cd02930 222 TWEEVVALAKALEAAGAD 239 (353)
T ss_pred CHHHHHHHHHHHHHcCCC
Confidence 445666777777778876
No 242
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=55.97 E-value=34 Score=27.36 Aligned_cols=46 Identities=20% Similarity=0.281 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEE
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVR 78 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~ 78 (172)
.-+.+.+.++.+.++|. ++-+.++ |.+.++...+.+.|++.|+.+-
T Consensus 77 ~p~~~~~~~~~al~~g~-~vVigtt---g~~~e~~~~l~~aA~~~g~~v~ 122 (266)
T TIGR00036 77 TPEGVLNHLKFALEHGV-RLVVGTT---GFSEEDKQELADLAEKAGIAAV 122 (266)
T ss_pred ChHHHHHHHHHHHHCCC-CEEEECC---CCCHHHHHHHHHHHhcCCccEE
Confidence 35677788999999998 7887764 6899999999999998776543
No 243
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=55.86 E-value=1.1e+02 Score=27.53 Aligned_cols=73 Identities=15% Similarity=0.101 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHcCCCcEEEE--EEEecCCCHHHHHHHHHHHhcCCCeEEEEeeeeCCCCCCCCCCCCCHHHHHHHHHHh
Q psy5052 31 SRVLAGIDLAVQLGYDNLKVN--VVVMKNFNDDEILDFVLLTRDRPIDVRFIEYMPFSGNQWNNTKIMPFSEMLTKIKEA 108 (172)
Q Consensus 31 ~~vl~~i~~~~~~g~~~v~in--~v~~~g~N~~ei~~l~~~a~~~g~~~~~i~~~p~g~~~~~~~~~~~~~e~~~~l~~~ 108 (172)
+.+..+++.++++|+ .+.+. ++..+-.+.+.+.++++-+.+.|++. |.+-.+.+. . .+....++.+.|++.
T Consensus 118 ~n~~~~i~~ak~~G~-~v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad~--I~i~Dt~G~-~---~P~~v~~lv~~lk~~ 190 (582)
T TIGR01108 118 RNLQAAIQAAKKHGA-HAQGTISYTTSPVHTLETYLDLAEELLEMGVDS--ICIKDMAGI-L---TPKAAYELVSALKKR 190 (582)
T ss_pred HHHHHHHHHHHHcCC-EEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCE--EEECCCCCC-c---CHHHHHHHHHHHHHh
Confidence 678889999999998 67755 33333235667777888788889863 223222221 1 122345666777766
Q ss_pred CC
Q psy5052 109 HP 110 (172)
Q Consensus 109 ~~ 110 (172)
++
T Consensus 191 ~~ 192 (582)
T TIGR01108 191 FG 192 (582)
T ss_pred CC
Confidence 64
No 244
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=54.88 E-value=37 Score=28.15 Aligned_cols=75 Identities=13% Similarity=0.073 Sum_probs=41.6
Q ss_pred hhcCCCeEEEeeeCCCHhhhccccCC---CCHHHHHHHHHHHHH-cCCCcEEEEEEE-ecC-CCHHHHHHHHHHHhcCCC
Q psy5052 2 KKAGLDSINISLDTLKPDKYEFITRR---KGWSRVLAGIDLAVQ-LGYDNLKVNVVV-MKN-FNDDEILDFVLLTRDRPI 75 (172)
Q Consensus 2 ~~aGl~~v~iSlds~~~e~~~~i~g~---~~~~~vl~~i~~~~~-~g~~~v~in~v~-~~g-~N~~ei~~l~~~a~~~g~ 75 (172)
+++|.|.|.|-+....+...+.=.|. ...+.+.+-++.+++ .++ +|.+.+-+ ..+ .+..++.++++.+.+.|+
T Consensus 87 ~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~-pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG~ 165 (333)
T PRK11815 87 EDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSI-PVTVKHRIGIDDQDSYEFLCDFVDTVAEAGC 165 (333)
T ss_pred HhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCC-ceEEEEEeeeCCCcCHHHHHHHHHHHHHhCC
Confidence 46788888877765444332211121 235556666666654 355 56664422 222 123456778888888888
Q ss_pred eE
Q psy5052 76 DV 77 (172)
Q Consensus 76 ~~ 77 (172)
+.
T Consensus 166 d~ 167 (333)
T PRK11815 166 DT 167 (333)
T ss_pred CE
Confidence 63
No 245
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=54.78 E-value=73 Score=26.48 Aligned_cols=70 Identities=16% Similarity=0.216 Sum_probs=38.0
Q ss_pred hhcCCCeEEEeeeC-------CCHhh---hccccCCCCHH-------HHHHHHHHHHHcCCCcEEEEEEEe----cCCCH
Q psy5052 2 KKAGLDSINISLDT-------LKPDK---YEFITRRKGWS-------RVLAGIDLAVQLGYDNLKVNVVVM----KNFND 60 (172)
Q Consensus 2 ~~aGl~~v~iSlds-------~~~e~---~~~i~g~~~~~-------~vl~~i~~~~~~g~~~v~in~v~~----~g~N~ 60 (172)
+++|.|.|.|.--. ++|-. -|+. +|+++ +++++|+... ++ +|.+.+-.. .|.+.
T Consensus 152 ~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~y--GGslenR~Rf~~eii~~ir~~~--~~-~v~vRis~~d~~~~G~~~ 226 (337)
T PRK13523 152 KEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEY--GGSPENRYRFLREIIDAVKEVW--DG-PLFVRISASDYHPGGLTV 226 (337)
T ss_pred HHcCCCEEEEccccchHHHHhcCCccCCcCCCC--CCCHHHHHHHHHHHHHHHHHhc--CC-CeEEEecccccCCCCCCH
Confidence 57899988765431 12321 1221 23433 4455555443 55 555554331 24556
Q ss_pred HHHHHHHHHHhcCCCe
Q psy5052 61 DEILDFVLLTRDRPID 76 (172)
Q Consensus 61 ~ei~~l~~~a~~~g~~ 76 (172)
+|..++++...+.|++
T Consensus 227 ~e~~~i~~~l~~~gvD 242 (337)
T PRK13523 227 QDYVQYAKWMKEQGVD 242 (337)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 6777788887777876
No 246
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=54.77 E-value=59 Score=26.83 Aligned_cols=72 Identities=18% Similarity=0.288 Sum_probs=40.6
Q ss_pred hhcCCCeEEEeeeC-------CCHhh---hccccCCCC----HHHHHHHHHHHHHc-C--CCcEEEEEEEe----cCCCH
Q psy5052 2 KKAGLDSINISLDT-------LKPDK---YEFITRRKG----WSRVLAGIDLAVQL-G--YDNLKVNVVVM----KNFND 60 (172)
Q Consensus 2 ~~aGl~~v~iSlds-------~~~e~---~~~i~g~~~----~~~vl~~i~~~~~~-g--~~~v~in~v~~----~g~N~ 60 (172)
+++|.|.|.|..-. ++|-. -|+. | |+ .+-+++-|++.+++ | + +|.+.+... .|.+.
T Consensus 159 ~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~y-G-GslenR~rf~~EiI~aIR~avG~d~-~v~vris~~~~~~~g~~~ 235 (338)
T cd04733 159 QEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEY-G-GSLENRARLLLEIYDAIRAAVGPGF-PVGIKLNSADFQRGGFTE 235 (338)
T ss_pred HHcCCCEEEEchhhhhHHHHhcCCcCCCCCccC-C-CCHHHHHHHHHHHHHHHHHHcCCCC-eEEEEEcHHHcCCCCCCH
Confidence 57999998887543 33432 2332 2 23 44444555555532 3 4 455554321 34566
Q ss_pred HHHHHHHHHHhcCCCe
Q psy5052 61 DEILDFVLLTRDRPID 76 (172)
Q Consensus 61 ~ei~~l~~~a~~~g~~ 76 (172)
+|..++++.+.+.|++
T Consensus 236 eea~~ia~~Le~~Gvd 251 (338)
T cd04733 236 EDALEVVEALEEAGVD 251 (338)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 6777788888888875
No 247
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=54.70 E-value=43 Score=27.85 Aligned_cols=72 Identities=17% Similarity=0.160 Sum_probs=45.1
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCC-CHHHHHHHHHHHHHcCCCcEEEEEEEecCCCH---------------HHHH
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRK-GWSRVLAGIDLAVQLGYDNLKVNVVVMKNFND---------------DEIL 64 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~-~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~---------------~ei~ 64 (172)
|.++|++.|||- +|.... ... ..+..++++..+.+ |+ +..+.+.+++| |. ....
T Consensus 165 L~~aG~~~IQiD----eP~l~~---~~~~~~~~~v~~~n~~~~-g~-~~~v~~HvC~G-~~~~~~~~~~~~~~~~~g~y~ 234 (339)
T PRK09121 165 LEAAGVDIIQFD----EPAFNV---FFDEVNDWGVAALERAIE-GL-KCETAVHICYG-YGIKANTDWKKTLGSEWRQYE 234 (339)
T ss_pred HHHCCCCEEEec----ccHHhh---hhHHHHHHHHHHHHHHHc-CC-CCceEEEEeCC-CCCCCccccccccccccccHH
Confidence 457888776653 222211 111 25566666766665 66 67788889998 53 2345
Q ss_pred HHHHHHhcCCCeEEEEee
Q psy5052 65 DFVLLTRDRPIDVRFIEY 82 (172)
Q Consensus 65 ~l~~~a~~~g~~~~~i~~ 82 (172)
.++....+++++.-++|+
T Consensus 235 ~i~~~l~~~~vd~~~lE~ 252 (339)
T PRK09121 235 EAFPKLQKSNIDIISLEC 252 (339)
T ss_pred HHHHHHHhCCCCEEEEEe
Confidence 666777778888877786
No 248
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=54.48 E-value=55 Score=26.43 Aligned_cols=68 Identities=12% Similarity=0.105 Sum_probs=40.4
Q ss_pred hhcC-CCeEEEeeeCCCHhh-hccccCCCCHHHHHHHHHHHHHc-CCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCe
Q psy5052 2 KKAG-LDSINISLDTLKPDK-YEFITRRKGWSRVLAGIDLAVQL-GYDNLKVNVVVMKNFNDDEILDFVLLTRDRPID 76 (172)
Q Consensus 2 ~~aG-l~~v~iSlds~~~e~-~~~i~g~~~~~~vl~~i~~~~~~-g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~ 76 (172)
+++| .|.|.|.+....... ...+. ...+.+.+-++..+++ .+ +|.+.+. .+.+++.++++.+.+.|++
T Consensus 114 ~~aG~~D~iElN~~cP~~~~gg~~~~--~~~~~~~eiv~~vr~~~~~-pv~vKl~----~~~~~~~~~a~~l~~~G~d 184 (301)
T PRK07259 114 SKAPNVDAIELNISCPNVKHGGMAFG--TDPELAYEVVKAVKEVVKV-PVIVKLT----PNVTDIVEIAKAAEEAGAD 184 (301)
T ss_pred hccCCcCEEEEECCCCCCCCCccccc--cCHHHHHHHHHHHHHhcCC-CEEEEcC----CCchhHHHHHHHHHHcCCC
Confidence 4677 888877765544221 01111 1345566666666654 55 5655532 2456788889988889986
No 249
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=54.14 E-value=74 Score=26.82 Aligned_cols=73 Identities=15% Similarity=0.209 Sum_probs=38.2
Q ss_pred hhcCCCeEEEeeeC-------CCH---hhhccccCCCCHH-------HHHHHHHHHHHcCCCcEEEEEEEe-------c-
Q psy5052 2 KKAGLDSINISLDT-------LKP---DKYEFITRRKGWS-------RVLAGIDLAVQLGYDNLKVNVVVM-------K- 56 (172)
Q Consensus 2 ~~aGl~~v~iSlds-------~~~---e~~~~i~g~~~~~-------~vl~~i~~~~~~g~~~v~in~v~~-------~- 56 (172)
++||.|.|.|.--. ++| ..-|+. | ++++ +++++|+......+ +|.+.+-.- +
T Consensus 154 ~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeY-G-GslenR~Rf~~eii~air~~vG~d~-~v~vRis~~~~~~~~~~~ 230 (361)
T cd04747 154 RRLGFDGIELHGAHGYLIDQFFWAGTNRRADGY-G-GSLAARSRFAAEVVKAIRAAVGPDF-PIILRFSQWKQQDYTARL 230 (361)
T ss_pred HHcCCCEEEEecccchHHHHhcCCCCCCCCCCC-C-CCHHHHHHHHHHHHHHHHHHcCCCC-eEEEEECcccccccccCC
Confidence 57899988776432 112 122221 2 3433 45555555443335 565554321 1
Q ss_pred CCCHHHHHHHHHHHhcCCCeE
Q psy5052 57 NFNDDEILDFVLLTRDRPIDV 77 (172)
Q Consensus 57 g~N~~ei~~l~~~a~~~g~~~ 77 (172)
|.+.+|...+++.+.+.|++.
T Consensus 231 g~~~~e~~~~~~~l~~~gvd~ 251 (361)
T cd04747 231 ADTPDELEALLAPLVDAGVDI 251 (361)
T ss_pred CCCHHHHHHHHHHHHHcCCCE
Confidence 244456667777788888763
No 250
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=53.39 E-value=46 Score=26.43 Aligned_cols=56 Identities=14% Similarity=0.124 Sum_probs=39.2
Q ss_pred CCHhhhccccCC------CCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEEEEee
Q psy5052 16 LKPDKYEFITRR------KGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRFIEY 82 (172)
Q Consensus 16 ~~~e~~~~i~g~------~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~~i~~ 82 (172)
+-||...++|-. +.++.+.+.|+.++++|+ +|++- +=+ + .+-++.|++.|++ .+|+
T Consensus 89 LVPEkr~ElTTegGldv~~~~~~l~~~i~~l~~~gI-~VSLF--iDP--~----~~qi~~A~~~GAd--~VEL 150 (237)
T TIGR00559 89 LVPEARDEVTTEGGLDVARLKDKLCELVKRFHAAGI-EVSLF--IDA--D----KDQISAAAEVGAD--RIEI 150 (237)
T ss_pred ECCCCCCCccCCcCchhhhCHHHHHHHHHHHHHCCC-EEEEE--eCC--C----HHHHHHHHHhCcC--EEEE
Confidence 346777777632 247778899999999999 77765 222 2 4567888999997 4554
No 251
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=53.10 E-value=25 Score=25.18 Aligned_cols=26 Identities=12% Similarity=0.236 Sum_probs=14.8
Q ss_pred ecCCCHHHHHHHHHHHhcCCCeEEEE
Q psy5052 55 MKNFNDDEILDFVLLTRDRPIDVRFI 80 (172)
Q Consensus 55 ~~g~N~~ei~~l~~~a~~~g~~~~~i 80 (172)
++....+++.++++.+++.|++++++
T Consensus 149 l~~~~~~~i~~ii~~~~~~~v~v~~v 174 (175)
T PF13727_consen 149 LPWSEEEQIKRIIEELENHGVRVRVV 174 (175)
T ss_dssp -TTS-HHHHHHHHHHHHTTT-EEEE-
T ss_pred cCccCHHHHHHHHHHHHhCCCEEEEe
Confidence 45345556777777777777776654
No 252
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=52.78 E-value=1.1e+02 Score=24.02 Aligned_cols=73 Identities=15% Similarity=0.192 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEecC-C--CHHHHHHHHHHHhcCCCe-EEEEeeeeCCCCCCCCCCCCCHHHHHHHH
Q psy5052 30 WSRVLAGIDLAVQLGYDNLKVNVVVMKN-F--NDDEILDFVLLTRDRPID-VRFIEYMPFSGNQWNNTKIMPFSEMLTKI 105 (172)
Q Consensus 30 ~~~vl~~i~~~~~~g~~~v~in~v~~~g-~--N~~ei~~l~~~a~~~g~~-~~~i~~~p~g~~~~~~~~~~~~~e~~~~l 105 (172)
-+.++++++.+++.|- .+-+-=.+-.| + ..+.+.+|+++|++.|+. |.+.-++ -|+- ..+-|...+++.|
T Consensus 13 n~~l~~~~~~~k~~~~-~lHl~GLlSdGGVHSh~~Hl~al~~~a~~~gv~~V~vH~f~-DGRD----t~P~S~~~yl~~l 86 (223)
T PF06415_consen 13 NPVLLEAIEHAKKNGG-RLHLMGLLSDGGVHSHIDHLFALIKLAKKQGVKKVYVHAFT-DGRD----TPPKSALKYLEEL 86 (223)
T ss_dssp SHHHHHHHHHHCCTT---EEEEEEESS-SSS--HHHHHHHHHHHHHTT-SEEEEEEEE--SSS----S-TTTHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCC-eEEEEEEecCCCccccHHHHHHHHHHHHHcCCCEEEEEEec-CCCC----CCcchHHHHHHHH
Confidence 3667788888888875 78887777665 1 234689999999999986 5444343 3442 1233455555555
Q ss_pred HHh
Q psy5052 106 KEA 108 (172)
Q Consensus 106 ~~~ 108 (172)
++.
T Consensus 87 ~~~ 89 (223)
T PF06415_consen 87 EEK 89 (223)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 253
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=52.71 E-value=25 Score=29.51 Aligned_cols=79 Identities=20% Similarity=0.385 Sum_probs=47.9
Q ss_pred ChhcCCCeEEEeeeCCCHhhhc---cccC--CC----CHH-HHHHHHHHHHHcCCCcEEEEEEEec-------CCCH---
Q psy5052 1 YKKAGLDSINISLDTLKPDKYE---FITR--RK----GWS-RVLAGIDLAVQLGYDNLKVNVVVMK-------NFND--- 60 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~---~i~g--~~----~~~-~vl~~i~~~~~~g~~~v~in~v~~~-------g~N~--- 60 (172)
|.++|++.|-+.+-++.+..++ .+.. .+ .|- ...+.|+.+.++|...|.+-..+-. +.+.
T Consensus 32 L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~ 111 (365)
T TIGR02660 32 LDEAGVDELEVGIPAMGEEERAVIRAIVALGLPARLMAWCRARDADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWV 111 (365)
T ss_pred HHHcCCCEEEEeCCCCCHHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHH
Confidence 4679999999988777764433 3321 11 232 3467888899999843333322210 0111
Q ss_pred -HHHHHHHHHHhcCCCeEEE
Q psy5052 61 -DEILDFVLLTRDRPIDVRF 79 (172)
Q Consensus 61 -~ei~~l~~~a~~~g~~~~~ 79 (172)
+.+.+.+++|++.|..+.|
T Consensus 112 l~~~~~~i~~ak~~g~~v~~ 131 (365)
T TIGR02660 112 LERLARLVSFARDRGLFVSV 131 (365)
T ss_pred HHHHHHHHHHHHhCCCEEEE
Confidence 3355889999999987765
No 254
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=52.22 E-value=57 Score=25.79 Aligned_cols=69 Identities=13% Similarity=0.104 Sum_probs=36.5
Q ss_pred hhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHH-Hc-CCCcEEEEEEEe---cCCC-------HHHHHHHHHH
Q psy5052 2 KKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAV-QL-GYDNLKVNVVVM---KNFN-------DDEILDFVLL 69 (172)
Q Consensus 2 ~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~-~~-g~~~v~in~v~~---~g~N-------~~ei~~l~~~ 69 (172)
+++|++.|.+.++...... ....+ +.-++.++.+. +. ++ .+.+..... ...+ .+.+.+.+++
T Consensus 20 ~~~G~d~vEl~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~ 93 (279)
T cd00019 20 KEIGFDTVAMFLGNPRSWL----SRPLK-KERAEKFKAIAEEGPSI-CLSVHAPYLINLASPDKEKREKSIERLKDEIER 93 (279)
T ss_pred HHcCCCEEEEEcCCCCccC----CCCCC-HHHHHHHHHHHHHcCCC-cEEEEcCceeccCCCCHHHHHHHHHHHHHHHHH
Confidence 6899999999988654211 11001 23334444443 44 44 455442211 0011 1246778888
Q ss_pred HhcCCCe
Q psy5052 70 TRDRPID 76 (172)
Q Consensus 70 a~~~g~~ 76 (172)
|+.+|+.
T Consensus 94 A~~lG~~ 100 (279)
T cd00019 94 CEELGIR 100 (279)
T ss_pred HHHcCCC
Confidence 8888886
No 255
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=52.18 E-value=48 Score=20.02 Aligned_cols=36 Identities=14% Similarity=0.154 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEEEecCCCHH-HHHHHHH
Q psy5052 31 SRVLAGIDLAVQLGYDNLKVNVVVMKNFNDD-EILDFVL 68 (172)
Q Consensus 31 ~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~-ei~~l~~ 68 (172)
+++.+.|..+++.|+ ++.+-.++++ .|.+ .+.+|++
T Consensus 12 ~el~~~l~~~r~~~~-~~~~kAvlT~-tN~~Wt~~~L~~ 48 (58)
T PF12646_consen 12 EELDKFLDALRKAGI-PIPLKAVLTP-TNINWTLKDLLE 48 (58)
T ss_pred HHHHHHHHHHHHcCC-CcceEEEECC-CcccCcHHHHHH
Confidence 566777788888899 8999999998 6875 4555443
No 256
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=51.26 E-value=19 Score=24.69 Aligned_cols=34 Identities=21% Similarity=0.544 Sum_probs=26.4
Q ss_pred EEecCCCHHHHHHHHHHHhcCCCeEEEEeeeeCC
Q psy5052 53 VVMKNFNDDEILDFVLLTRDRPIDVRFIEYMPFS 86 (172)
Q Consensus 53 v~~~g~N~~ei~~l~~~a~~~g~~~~~i~~~p~g 86 (172)
++++..++.++.-++.+|++.|+.+....-||+.
T Consensus 59 vLVr~~~~pd~~Hl~~LA~ekgVpVe~~~d~~Y~ 92 (100)
T PF15608_consen 59 VLVRDPDDPDLAHLLLLAEEKGVPVEVYPDLPYS 92 (100)
T ss_pred EEECCCCCccHHHHHHHHHHcCCcEEEeCCCCeE
Confidence 4556567788999999999999998776666654
No 257
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=51.23 E-value=68 Score=26.08 Aligned_cols=73 Identities=16% Similarity=0.207 Sum_probs=39.0
Q ss_pred hhcCCCeEEEeeeC-------CCHhhhccccC--CCCH----HHHHHHHHHHHH---cCCCcEEEEEEEe----cCCCHH
Q psy5052 2 KKAGLDSINISLDT-------LKPDKYEFITR--RKGW----SRVLAGIDLAVQ---LGYDNLKVNVVVM----KNFNDD 61 (172)
Q Consensus 2 ~~aGl~~v~iSlds-------~~~e~~~~i~g--~~~~----~~vl~~i~~~~~---~g~~~v~in~v~~----~g~N~~ 61 (172)
+++|.|.|.|..-. ++|.. ++-+. ++++ +-+++-++.+++ .++ +|.+.+... .|.+.+
T Consensus 151 ~~aGfDgveih~~~gyL~~qFlsp~~-n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~-~i~vris~~~~~~~g~~~~ 228 (327)
T cd02803 151 KEAGFDGVEIHGAHGYLLSQFLSPYT-NKRTDEYGGSLENRARFLLEIVAAVREAVGPDF-PVGVRLSADDFVPGGLTLE 228 (327)
T ss_pred HHcCCCEEEEcchhhhHHHHhcCccc-cCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCc-eEEEEechhccCCCCCCHH
Confidence 57899998876531 12221 11111 1233 333444555543 244 555544322 223556
Q ss_pred HHHHHHHHHhcCCCe
Q psy5052 62 EILDFVLLTRDRPID 76 (172)
Q Consensus 62 ei~~l~~~a~~~g~~ 76 (172)
+..++++.+.+.|++
T Consensus 229 e~~~la~~l~~~G~d 243 (327)
T cd02803 229 EAIEIAKALEEAGVD 243 (327)
T ss_pred HHHHHHHHHHHcCCC
Confidence 778888888888876
No 258
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=51.06 E-value=32 Score=27.88 Aligned_cols=51 Identities=16% Similarity=0.188 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEecC-----CC--H----HHHHHHHHHHhcCCCeEEEE
Q psy5052 30 WSRVLAGIDLAVQLGYDNLKVNVVVMKN-----FN--D----DEILDFVLLTRDRPIDVRFI 80 (172)
Q Consensus 30 ~~~vl~~i~~~~~~g~~~v~in~v~~~g-----~N--~----~ei~~l~~~a~~~g~~~~~i 80 (172)
.....++++++.++|.+.|.+-+.+... +| . +.+.+++++|++.|..+++-
T Consensus 73 ~r~~~~die~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~ 134 (279)
T cd07947 73 IRANKEDLKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCH 134 (279)
T ss_pred ecCCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 3445788999999998545544333211 11 1 23677999999999877653
No 259
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=50.91 E-value=75 Score=24.81 Aligned_cols=47 Identities=26% Similarity=0.336 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHHHHc--CCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCe
Q psy5052 28 KGWSRVLAGIDLAVQL--GYDNLKVNVVVMKNFNDDEILDFVLLTRDRPID 76 (172)
Q Consensus 28 ~~~~~vl~~i~~~~~~--g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~ 76 (172)
+.++.+.+-|+.+.++ +. .+||-.-. .-++++++.++.+.+.+.|++
T Consensus 103 g~~~~v~~ei~~v~~~~~~~-~lKvIlEt-~~L~~e~i~~a~~~~~~agad 151 (221)
T PRK00507 103 GDWDAVEADIRAVVEAAGGA-VLKVIIET-CLLTDEEKVKACEIAKEAGAD 151 (221)
T ss_pred CCHHHHHHHHHHHHHhcCCc-eEEEEeec-CcCCHHHHHHHHHHHHHhCCC
Confidence 3589999988888874 54 56654332 226888999999999999998
No 260
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=50.69 E-value=1.4e+02 Score=27.09 Aligned_cols=74 Identities=12% Similarity=0.086 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEEE--ecCCCHHHHHHHHHHHhcCCCeEEEEeeeeCCCCCCCCCCCCCHHHHHHHHHH
Q psy5052 30 WSRVLAGIDLAVQLGYDNLKVNVVV--MKNFNDDEILDFVLLTRDRPIDVRFIEYMPFSGNQWNNTKIMPFSEMLTKIKE 107 (172)
Q Consensus 30 ~~~vl~~i~~~~~~g~~~v~in~v~--~~g~N~~ei~~l~~~a~~~g~~~~~i~~~p~g~~~~~~~~~~~~~e~~~~l~~ 107 (172)
.+.+..+++.++++|. .+..+... .+-.+.+.+.++++-+.+.|++. |.+-.+.+. . .+....++.+.|++
T Consensus 122 ~~n~~~~i~~ak~~G~-~v~~~i~~t~~p~~t~~~~~~~a~~l~~~Gad~--I~i~Dt~G~-~---~P~~~~~lv~~lk~ 194 (592)
T PRK09282 122 VRNMEVAIKAAKKAGA-HVQGTISYTTSPVHTIEKYVELAKELEEMGCDS--ICIKDMAGL-L---TPYAAYELVKALKE 194 (592)
T ss_pred HHHHHHHHHHHHHcCC-EEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCE--EEECCcCCC-c---CHHHHHHHHHHHHH
Confidence 4678889999999998 67755433 23245566777777777888863 222222221 1 12234566677776
Q ss_pred hCC
Q psy5052 108 AHP 110 (172)
Q Consensus 108 ~~~ 110 (172)
.++
T Consensus 195 ~~~ 197 (592)
T PRK09282 195 EVD 197 (592)
T ss_pred hCC
Confidence 663
No 261
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=50.59 E-value=78 Score=29.36 Aligned_cols=72 Identities=11% Similarity=0.149 Sum_probs=39.1
Q ss_pred hhcCCCeEEEeeeC-------CCHhh---hccccCCCCHH-------HHHHHHHHHHHcCCCcEEEEEEEe----cCCCH
Q psy5052 2 KKAGLDSINISLDT-------LKPDK---YEFITRRKGWS-------RVLAGIDLAVQLGYDNLKVNVVVM----KNFND 60 (172)
Q Consensus 2 ~~aGl~~v~iSlds-------~~~e~---~~~i~g~~~~~-------~vl~~i~~~~~~g~~~v~in~v~~----~g~N~ 60 (172)
+++|.|.|.|..-. ++|-. -|+. | ++++ +++++|+.+...++ +|.+.+... .|.+.
T Consensus 561 ~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~y-G-GslenR~r~~~eiv~~ir~~~~~~~-~v~~ri~~~~~~~~g~~~ 637 (765)
T PRK08255 561 AEAGFDWLELHCAHGYLLSSFISPLTNQRTDEY-G-GSLENRLRYPLEVFRAVRAVWPAEK-PMSVRISAHDWVEGGNTP 637 (765)
T ss_pred HHcCCCEEEEecccchHHHHhcCCCCCCCCCCC-C-CCHHHHhHHHHHHHHHHHHhcCCCC-eeEEEEccccccCCCCCH
Confidence 57899998876541 13321 1221 2 3543 45555555443345 555554432 23345
Q ss_pred HHHHHHHHHHhcCCCe
Q psy5052 61 DEILDFVLLTRDRPID 76 (172)
Q Consensus 61 ~ei~~l~~~a~~~g~~ 76 (172)
+|...+++.+.+.|++
T Consensus 638 ~~~~~~~~~l~~~g~d 653 (765)
T PRK08255 638 DDAVEIARAFKAAGAD 653 (765)
T ss_pred HHHHHHHHHHHhcCCc
Confidence 5666777777788876
No 262
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=50.47 E-value=43 Score=26.67 Aligned_cols=79 Identities=22% Similarity=0.330 Sum_probs=44.8
Q ss_pred ChhcCCCeEEEeeeCCCHhhhcc---ccC--CC----CHH-HHHHHHHHHHHcC----CCcEEEEEEEec-------CC-
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEF---ITR--RK----GWS-RVLAGIDLAVQLG----YDNLKVNVVVMK-------NF- 58 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~---i~g--~~----~~~-~vl~~i~~~~~~g----~~~v~in~v~~~-------g~- 58 (172)
|.++|++.|-+-.-+.+|+-++. +.. ++ .+- ...+.++.+.++| +..+.+-..+.. +.
T Consensus 29 L~~~Gv~~iEvg~~~~~~~~~~~~~~l~~~~~~~~~~~l~r~~~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~ 108 (268)
T cd07940 29 LDELGVDVIEAGFPAASPGDFEAVKRIAREVLNAEICGLARAVKKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKT 108 (268)
T ss_pred HHHcCCCEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEEEccCCHhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCC
Confidence 45789999988665544432222 211 11 122 3366777777777 643443322210 01
Q ss_pred ---CHHHHHHHHHHHhcCCCeEEE
Q psy5052 59 ---NDDEILDFVLLTRDRPIDVRF 79 (172)
Q Consensus 59 ---N~~ei~~l~~~a~~~g~~~~~ 79 (172)
+.+.+.++++++++.|..+.|
T Consensus 109 ~~~~~~~~~~~i~~a~~~G~~v~~ 132 (268)
T cd07940 109 REEVLERAVEAVEYAKSHGLDVEF 132 (268)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEE
Confidence 234577899999999987764
No 263
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=50.25 E-value=80 Score=24.91 Aligned_cols=71 Identities=18% Similarity=0.149 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEec-CCC--------HHHHHHHHHHHhcCCCeEEEEeeeeCCCCCCCCCCCCCHH
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVVVMK-NFN--------DDEILDFVLLTRDRPIDVRFIEYMPFSGNQWNNTKIMPFS 99 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v~~~-g~N--------~~ei~~l~~~a~~~g~~~~~i~~~p~g~~~~~~~~~~~~~ 99 (172)
..+.+.+.|+.+++.|.+.+.+...... +.. .+.+.++.++|++.|+.+-+ |.++.. ..-+..
T Consensus 97 ~~~~~~~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~i-E~~~~~-------~~~~~~ 168 (283)
T PRK13209 97 ALEIMRKAIQLAQDLGIRVIQLAGYDVYYEQANNETRRRFIDGLKESVELASRASVTLAF-EIMDTP-------FMNSIS 168 (283)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEE-eecCCc-------ccCCHH
Confidence 4667778899999999843332211000 111 12366788999999987654 333211 122455
Q ss_pred HHHHHHHH
Q psy5052 100 EMLTKIKE 107 (172)
Q Consensus 100 e~~~~l~~ 107 (172)
+.++.+++
T Consensus 169 ~~~~ll~~ 176 (283)
T PRK13209 169 KALGYAHY 176 (283)
T ss_pred HHHHHHHH
Confidence 66666654
No 264
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=49.39 E-value=83 Score=25.92 Aligned_cols=77 Identities=17% Similarity=0.267 Sum_probs=39.7
Q ss_pred hhcCCCeEEEeeeC-------CCH---hhhccccCC---CCHHHHHHHHHHHHHc---CCCcEEEEEEEe----cCCCHH
Q psy5052 2 KKAGLDSINISLDT-------LKP---DKYEFITRR---KGWSRVLAGIDLAVQL---GYDNLKVNVVVM----KNFNDD 61 (172)
Q Consensus 2 ~~aGl~~v~iSlds-------~~~---e~~~~i~g~---~~~~~vl~~i~~~~~~---g~~~v~in~v~~----~g~N~~ 61 (172)
+++|.|.|.|..-. ++| ...|+. |+ +..+.+++-++..+++ ++ +|.+.+... .|.+.+
T Consensus 164 ~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~y-Ggsl~nr~rf~~eiv~aIR~~vG~d~-~v~vri~~~~~~~~g~~~~ 241 (336)
T cd02932 164 VEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEY-GGSLENRMRFLLEVVDAVRAVWPEDK-PLFVRISATDWVEGGWDLE 241 (336)
T ss_pred HHcCCCEEEEccccccHHHHhcCCccCCCCccc-CCCHHHHhHHHHHHHHHHHHHcCCCc-eEEEEEcccccCCCCCCHH
Confidence 57999998886521 112 222332 21 1234444444444432 44 455554321 334556
Q ss_pred HHHHHHHHHhcCCCeEEEEee
Q psy5052 62 EILDFVLLTRDRPIDVRFIEY 82 (172)
Q Consensus 62 ei~~l~~~a~~~g~~~~~i~~ 82 (172)
|...+++.+.+.|++ +++.
T Consensus 242 e~~~ia~~Le~~gvd--~iev 260 (336)
T cd02932 242 DSVELAKALKELGVD--LIDV 260 (336)
T ss_pred HHHHHHHHHHHcCCC--EEEE
Confidence 666777777777765 4443
No 265
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=49.24 E-value=72 Score=25.13 Aligned_cols=52 Identities=17% Similarity=0.267 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEecCCC--HHHHHHHHHHHh-----------cCCCeEEEE
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVVVMKNFN--DDEILDFVLLTR-----------DRPIDVRFI 80 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N--~~ei~~l~~~a~-----------~~g~~~~~i 80 (172)
.++.+.+.++.+.+.|++.+++=.-=+.+.+ .+|+..|+++.+ +.|+.++++
T Consensus 28 G~~~~~~v~~~c~~~GI~~lT~yaFStEN~~Rp~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~i 92 (226)
T TIGR00055 28 GVKSLRRILRWCANLGVECLTLYAFSTENWKRPKEEVDFLMELFEKKLDREVKELHRYNVRIRII 92 (226)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEEeehhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 5888999999999999964554432232222 357777666643 567877776
No 266
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=49.02 E-value=37 Score=23.69 Aligned_cols=15 Identities=27% Similarity=0.603 Sum_probs=10.8
Q ss_pred CCcee-eccCCcEEec
Q psy5052 149 CNRLR-LMADGSLKVC 163 (172)
Q Consensus 149 c~~~~-i~~~G~v~pC 163 (172)
...+. |++||++.-|
T Consensus 123 v~~~~~V~~~G~v~~~ 138 (139)
T PF01565_consen 123 VLSVEVVLADGEVVRC 138 (139)
T ss_dssp EEEEEEEETTSSEEEE
T ss_pred EEEEEEEcCCCcEEEe
Confidence 33444 7999999876
No 267
>PF13918 PLDc_3: PLD-like domain
Probab=48.98 E-value=62 Score=24.53 Aligned_cols=82 Identities=20% Similarity=0.291 Sum_probs=46.6
Q ss_pred CHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEE--EEEecCCCH-----HHHHHHHHHH-hcCCCeEEEEeeeeCCCC
Q psy5052 17 KPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVN--VVVMKNFND-----DEILDFVLLT-RDRPIDVRFIEYMPFSGN 88 (172)
Q Consensus 17 ~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in--~v~~~g~N~-----~ei~~l~~~a-~~~g~~~~~i~~~p~g~~ 88 (172)
+|+.+..-.+..+.+.++..|+.|++. + .+.|. ..+++ .+. ..|.+.++-| -++||.||+. ++
T Consensus 71 SPp~~~~~gRT~DldAIl~~I~~A~~f-I-~IsVMdY~P~~~-~~~~~~YWP~ID~ALR~AA~~R~V~VRlL----IS-- 141 (177)
T PF13918_consen 71 SPPPFCPKGRTLDLDAILSVIDSAKKF-I-YISVMDYLPTSR-YSKPNRYWPVIDDALRRAAIERGVKVRLL----IS-- 141 (177)
T ss_pred CCcccCCCCCCcHHHHHHHHHHhHhhe-E-EEEEeecCCeee-cCCCCCcchhHHHHHHHHHHHcCCeEEEE----Ee--
Confidence 344444433445899999999999985 3 34444 12222 221 3576655544 5899999875 11
Q ss_pred CCCCCCCCCHHHHHHHHHHh
Q psy5052 89 QWNNTKIMPFSEMLTKIKEA 108 (172)
Q Consensus 89 ~~~~~~~~~~~e~~~~l~~~ 108 (172)
.|.... .....+++.|...
T Consensus 142 ~W~ht~-p~~~~fL~SL~~l 160 (177)
T PF13918_consen 142 CWKHTD-PSMFPFLRSLQAL 160 (177)
T ss_pred ecCCCC-hhHHHHHHHHHHh
Confidence 254322 2334566777654
No 268
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=48.64 E-value=74 Score=28.60 Aligned_cols=51 Identities=14% Similarity=0.072 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhc-CCCeEEEEe
Q psy5052 30 WSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRD-RPIDVRFIE 81 (172)
Q Consensus 30 ~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~-~g~~~~~i~ 81 (172)
|..+.+-|+.+++.|+ ++-|..--.+..++.|++.+.+++++ .++.+-..+
T Consensus 379 ~~NL~~Hi~n~~~fg~-pvVVaiN~F~~Dt~~Ei~~~~~~~~~~~~~~~~~~~ 430 (578)
T PRK13506 379 FANLKWHINNVAQYGL-PVVVAINRFPTDTDEELEWLKEAVLLTGAFGCEISE 430 (578)
T ss_pred HHHHHHHHHHHHHcCC-CeEEEecCCCCCCHHHHHHHHHHHHHcCCCcEEEec
Confidence 6666677778888898 76666544554567899999999998 676654433
No 269
>PLN00196 alpha-amylase; Provisional
Probab=48.48 E-value=36 Score=29.41 Aligned_cols=54 Identities=11% Similarity=0.166 Sum_probs=38.5
Q ss_pred ChhcCCCeEEEe--eeCCCHhhhc-----ccc--CCCCHHHHHHHHHHHHHcCCCcEEEEEEEe
Q psy5052 1 YKKAGLDSINIS--LDTLKPDKYE-----FIT--RRKGWSRVLAGIDLAVQLGYDNLKVNVVVM 55 (172)
Q Consensus 1 L~~aGl~~v~iS--lds~~~e~~~-----~i~--g~~~~~~vl~~i~~~~~~g~~~v~in~v~~ 55 (172)
|+++|++.|-|+ .++.+..-|+ .+. .-|+-++..+.|+++++.|+ +|-+-.|+.
T Consensus 53 L~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GI-kVilDvV~N 115 (428)
T PLN00196 53 IAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGV-QVIADIVIN 115 (428)
T ss_pred HHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCC-EEEEEECcc
Confidence 578999999876 4444333332 232 34678889999999999999 788887765
No 270
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=48.21 E-value=90 Score=21.60 Aligned_cols=67 Identities=15% Similarity=0.171 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEecCCCHH---HHHHHHHHHhcCCCeEEEEeeeeCCCCCCCCCCCCCHHHHHHHHH
Q psy5052 30 WSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDD---EILDFVLLTRDRPIDVRFIEYMPFSGNQWNNTKIMPFSEMLTKIK 106 (172)
Q Consensus 30 ~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~---ei~~l~~~a~~~g~~~~~i~~~p~g~~~~~~~~~~~~~e~~~~l~ 106 (172)
.+++.+-++.+.+.|+ ..++-++... -+.. .+....+.|+++|+....+.+ | ...+.+++++.|+
T Consensus 13 ~~~l~~~i~~l~~~~~-~P~Laii~vg-~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l-~---------~~~~~~el~~~i~ 80 (117)
T PF00763_consen 13 KEELKEEIEKLKEKGI-TPKLAIILVG-DDPASISYVRSKQKAAEKLGIEFELIEL-P---------EDISEEELLELIE 80 (117)
T ss_dssp HHHHHHHHHHHHHCT----EEEEEEES---HHHHHHHHHHHHHHHHHT-EEEEEEE-----------TTSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CcEEEEEecC-CChhHHHHHHHHHHHHHHcCCceEEEEC-C---------CCcCHHHHHHHHH
Confidence 4667778888888887 6777776664 3333 366788999999998877766 1 2345677777777
Q ss_pred Hh
Q psy5052 107 EA 108 (172)
Q Consensus 107 ~~ 108 (172)
+.
T Consensus 81 ~l 82 (117)
T PF00763_consen 81 KL 82 (117)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 271
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=48.15 E-value=27 Score=27.22 Aligned_cols=54 Identities=13% Similarity=0.151 Sum_probs=34.8
Q ss_pred ChhcCCCeEEEeeeC--CCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEe
Q psy5052 1 YKKAGLDSINISLDT--LKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVM 55 (172)
Q Consensus 1 L~~aGl~~v~iSlds--~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~ 55 (172)
|++.|++.|.|-+.- ..+..-..-.....++++.+.|+.+.+.|+ .|-|...-.
T Consensus 30 ~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi-~vild~h~~ 85 (281)
T PF00150_consen 30 LKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGI-YVILDLHNA 85 (281)
T ss_dssp HHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT--EEEEEEEES
T ss_pred HHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCC-eEEEEeccC
Confidence 478899988888773 211000000112358999999999999999 787776664
No 272
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=47.96 E-value=32 Score=28.79 Aligned_cols=75 Identities=19% Similarity=0.286 Sum_probs=0.0
Q ss_pred ChhcCCCeEEEeeeCCCH-hhhccccCCCC--------HHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHh
Q psy5052 1 YKKAGLDSINISLDTLKP-DKYEFITRRKG--------WSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTR 71 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~-e~~~~i~g~~~--------~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~ 71 (172)
|.+||-+-|.|++.+... +....|+..-. |+ ..-...+.++|...+.||-=-+. ..+.+.++++.|+
T Consensus 43 L~~aGceiVRvavp~~~~A~al~~I~~~~~iPlVADIHFd--~~lAl~a~~~g~dkiRINPGNig--~~e~v~~vv~~ak 118 (346)
T TIGR00612 43 LEEAGCDIVRVTVPDRESAAAFEAIKEGTNVPLVADIHFD--YRLAALAMAKGVAKVRINPGNIG--FRERVRDVVEKAR 118 (346)
T ss_pred HHHcCCCEEEEcCCCHHHHHhHHHHHhCCCCCEEEeeCCC--cHHHHHHHHhccCeEEECCCCCC--CHHHHHHHHHHHH
Q ss_pred cCCCeEEE
Q psy5052 72 DRPIDVRF 79 (172)
Q Consensus 72 ~~g~~~~~ 79 (172)
++++.+|.
T Consensus 119 ~~~ipIRI 126 (346)
T TIGR00612 119 DHGKAMRI 126 (346)
T ss_pred HCCCCEEE
No 273
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=47.84 E-value=1.9e+02 Score=25.20 Aligned_cols=89 Identities=18% Similarity=0.150 Sum_probs=49.4
Q ss_pred hcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEE--EEEecCCCHHHHHHHHHHHhcCCCeEEEE
Q psy5052 3 KAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVN--VVVMKNFNDDEILDFVLLTRDRPIDVRFI 80 (172)
Q Consensus 3 ~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in--~v~~~g~N~~ei~~l~~~a~~~g~~~~~i 80 (172)
++|++.+.|... +++ .+.+.++++.+++.|. .+.+. ++.-+-.+.+.+.++++-+.+.|++. |
T Consensus 107 ~~Gvd~irif~~-lnd-----------~~n~~~~v~~ak~~G~-~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~--I 171 (448)
T PRK12331 107 ENGIDIIRIFDA-LND-----------VRNLETAVKATKKAGG-HAQVAISYTTSPVHTIDYFVKLAKEMQEMGADS--I 171 (448)
T ss_pred HCCCCEEEEEEe-cCc-----------HHHHHHHHHHHHHcCC-eEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCE--E
Confidence 567776665543 221 1346678899999997 66544 33322235556667777777888863 2
Q ss_pred eeeeCCCCCCCCCCCCCHHHHHHHHHHhCC
Q psy5052 81 EYMPFSGNQWNNTKIMPFSEMLTKIKEAHP 110 (172)
Q Consensus 81 ~~~p~g~~~~~~~~~~~~~e~~~~l~~~~~ 110 (172)
.+-.+.+. . .+....++++.|++.++
T Consensus 172 ~i~Dt~G~-l---~P~~v~~lv~alk~~~~ 197 (448)
T PRK12331 172 CIKDMAGI-L---TPYVAYELVKRIKEAVT 197 (448)
T ss_pred EEcCCCCC-C---CHHHHHHHHHHHHHhcC
Confidence 22222221 1 12234556666776653
No 274
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=47.77 E-value=1e+02 Score=25.61 Aligned_cols=72 Identities=17% Similarity=0.226 Sum_probs=37.6
Q ss_pred hhcCCCeEEEeee-C------CCHhhh---ccccCCCCH----HHHHHHHHHHHHc-C--CCcEEEEEEEe----cCCCH
Q psy5052 2 KKAGLDSINISLD-T------LKPDKY---EFITRRKGW----SRVLAGIDLAVQL-G--YDNLKVNVVVM----KNFND 60 (172)
Q Consensus 2 ~~aGl~~v~iSld-s------~~~e~~---~~i~g~~~~----~~vl~~i~~~~~~-g--~~~v~in~v~~----~g~N~ 60 (172)
+++|.|.|.|..- + ++|-+. |+. | +++ +-+++-++..+++ | + .|++..-.. .|.+.
T Consensus 151 ~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~y-G-GslenR~r~~~eiv~~ir~~vg~~~-~v~iRl~~~~~~~~G~~~ 227 (343)
T cd04734 151 QAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEY-G-GSLENRMRFLLEVLAAVRAAVGPDF-IVGIRISGDEDTEGGLSP 227 (343)
T ss_pred HHcCCCEEEEccccchHHHHhhCCCcCCCCCcC-C-CCHHHHhHHHHHHHHHHHHHcCCCC-eEEEEeehhhccCCCCCH
Confidence 5799999988773 1 133221 222 2 233 3444444444432 4 4 455543321 22345
Q ss_pred HHHHHHHHHHhcCC-Ce
Q psy5052 61 DEILDFVLLTRDRP-ID 76 (172)
Q Consensus 61 ~ei~~l~~~a~~~g-~~ 76 (172)
+|..++++...+.| ++
T Consensus 228 ~e~~~~~~~l~~~G~vd 244 (343)
T cd04734 228 DEALEIAARLAAEGLID 244 (343)
T ss_pred HHHHHHHHHHHhcCCCC
Confidence 56667777777777 55
No 275
>PTZ00124 adenosine deaminase; Provisional
Probab=47.76 E-value=57 Score=27.50 Aligned_cols=66 Identities=14% Similarity=0.120 Sum_probs=39.2
Q ss_pred hcCCCeEEEeeeCCCHhhhccccCCCCHHHHH----HHHHHHHH---cCCCcEEEEEEEecCCCHHHHHHHHHHHhcC
Q psy5052 3 KAGLDSINISLDTLKPDKYEFITRRKGWSRVL----AGIDLAVQ---LGYDNLKVNVVVMKNFNDDEILDFVLLTRDR 73 (172)
Q Consensus 3 ~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl----~~i~~~~~---~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~ 73 (172)
+-|+..+-+.. +|..+..-+| -+++.++ ++++.+.+ .|+ .+++-+.++|....++..+++++|.++
T Consensus 117 ~dgV~Y~Eir~---~P~~~~~~~g-l~~~~vv~av~~g~~~a~~~~~~gI-~~~lI~~~~R~~~~e~a~e~~~~a~~~ 189 (362)
T PTZ00124 117 KEGVVLMEFRY---SPTFVAFKHN-LDIDLIHQAIVKGIKEAVELLDHKI-EVGLLCIGDTGHDAAPIKESADFCLKH 189 (362)
T ss_pred HcCCEEEEEEc---CchhhhcCCC-CCHHHHHHHHHHHHHHHHhccCCCc-eEeEEEEecCCCCHHHHHHHHHHHHhc
Confidence 34665555665 3432221112 2445554 55555644 466 577777778866777788899999874
No 276
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=47.62 E-value=1.2e+02 Score=24.59 Aligned_cols=84 Identities=12% Similarity=0.101 Sum_probs=53.4
Q ss_pred ChhcCCCeEEEeeeCCCHh--------hhc-cccCCCCHHHHHHHHHHHHHcCCC-cEEEEEEEecCCCHHHHHHHHHHH
Q psy5052 1 YKKAGLDSINISLDTLKPD--------KYE-FITRRKGWSRVLAGIDLAVQLGYD-NLKVNVVVMKNFNDDEILDFVLLT 70 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e--------~~~-~i~g~~~~~~vl~~i~~~~~~g~~-~v~in~v~~~g~N~~ei~~l~~~a 70 (172)
|.++|.|.+-+-+-..||= .|. .+.++-+.+++++-++...+.+.. ++-+.+-..+ .=..-++++++.+
T Consensus 40 L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Np-i~~~Gie~F~~~~ 118 (265)
T COG0159 40 LVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNP-IFNYGIEKFLRRA 118 (265)
T ss_pred HHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccH-HHHhhHHHHHHHH
Confidence 3577888888888777762 122 234444799999999999976541 4544443332 1123577899999
Q ss_pred hcCCCeEEEEeeeeC
Q psy5052 71 RDRPIDVRFIEYMPF 85 (172)
Q Consensus 71 ~~~g~~~~~i~~~p~ 85 (172)
++.|++--++.=+|.
T Consensus 119 ~~~GvdGlivpDLP~ 133 (265)
T COG0159 119 KEAGVDGLLVPDLPP 133 (265)
T ss_pred HHcCCCEEEeCCCCh
Confidence 999987555533343
No 277
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=46.92 E-value=37 Score=22.84 Aligned_cols=17 Identities=12% Similarity=0.266 Sum_probs=7.8
Q ss_pred CHHHHHHHHHHHhcCCC
Q psy5052 59 NDDEILDFVLLTRDRPI 75 (172)
Q Consensus 59 N~~ei~~l~~~a~~~g~ 75 (172)
|.+|+.++++.+++.|.
T Consensus 98 ~~~~~~~l~~~a~~~~~ 114 (120)
T PF01408_consen 98 TLEEAEELVEAAKEKGV 114 (120)
T ss_dssp SHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 44444444444444443
No 278
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=46.69 E-value=33 Score=27.04 Aligned_cols=44 Identities=16% Similarity=0.112 Sum_probs=27.1
Q ss_pred HHHHHHHHHhcCCCeEEEEeeeeCCCCCCCCCCCCCHHHHHHHHHHhC
Q psy5052 62 EILDFVLLTRDRPIDVRFIEYMPFSGNQWNNTKIMPFSEMLTKIKEAH 109 (172)
Q Consensus 62 ei~~l~~~a~~~g~~~~~i~~~p~g~~~~~~~~~~~~~e~~~~l~~~~ 109 (172)
.+.++++.+++.|..+ |++-.| -.....+..+..++++...+..
T Consensus 186 ~~~~il~~~~~~g~~l---EiNt~g-~r~~~~~~yP~~~il~~~~~~g 229 (253)
T TIGR01856 186 LLQRILKLVASQGKAL---EFNTSG-LRKPLEEAYPSKELLNLAKELG 229 (253)
T ss_pred HHHHHHHHHHHcCCEE---EEEcHh-hcCCCCCCCCCHHHHHHHHHcC
Confidence 4788899999888753 333222 1112234566778888887753
No 279
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=46.67 E-value=1.9e+02 Score=25.67 Aligned_cols=74 Identities=15% Similarity=0.065 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHcCCCcEEEE--EEEecCCCHHHHHHHHHHHhcCCCeEEEEeeeeCCCCCCCCCCCCCHHHHHHHHHH
Q psy5052 30 WSRVLAGIDLAVQLGYDNLKVN--VVVMKNFNDDEILDFVLLTRDRPIDVRFIEYMPFSGNQWNNTKIMPFSEMLTKIKE 107 (172)
Q Consensus 30 ~~~vl~~i~~~~~~g~~~v~in--~v~~~g~N~~ei~~l~~~a~~~g~~~~~i~~~p~g~~~~~~~~~~~~~e~~~~l~~ 107 (172)
.+....+++.++++|. .+... +++.+-.+.+.+.++++-+.+.|++. |.+-.+-+. . .+....++.+.|++
T Consensus 123 v~nl~~ai~~vk~ag~-~~~~~i~yt~sp~~t~e~~~~~a~~l~~~Gad~--I~IkDtaGl-l---~P~~~~~LV~~Lk~ 195 (499)
T PRK12330 123 PRNLEHAMKAVKKVGK-HAQGTICYTVSPIHTVEGFVEQAKRLLDMGADS--ICIKDMAAL-L---KPQPAYDIVKGIKE 195 (499)
T ss_pred HHHHHHHHHHHHHhCC-eEEEEEEEecCCCCCHHHHHHHHHHHHHcCCCE--EEeCCCccC-C---CHHHHHHHHHHHHH
Confidence 4677778888888886 56444 34454356677777887778888863 222222110 0 12234456666776
Q ss_pred hCC
Q psy5052 108 AHP 110 (172)
Q Consensus 108 ~~~ 110 (172)
.++
T Consensus 196 ~~~ 198 (499)
T PRK12330 196 ACG 198 (499)
T ss_pred hCC
Confidence 663
No 280
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=46.49 E-value=91 Score=24.95 Aligned_cols=52 Identities=23% Similarity=0.296 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEecCCC--HHHHHHHHHHHh-----------cCCCeEEEE
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVVVMKNFN--DDEILDFVLLTR-----------DRPIDVRFI 80 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N--~~ei~~l~~~a~-----------~~g~~~~~i 80 (172)
.++.+.+.++.+.+.|++.|++-.--+.+.+ .+|+..+++++. +.|+.++++
T Consensus 51 G~~~l~~~l~~c~~~GI~~vTvYaFS~eN~~R~~~Ev~~Lm~l~~~~l~~~~~~~~~~~iri~vi 115 (251)
T PRK14830 51 GMDTVKKITKAASELGVKVLTLYAFSTENWKRPKDEVKFLMNLPVEFLDKFVPELIENNVKVNVI 115 (251)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEEEehhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 5889999999999999976777665444333 347777765442 468888776
No 281
>PLN02759 Formate--tetrahydrofolate ligase
Probab=46.28 E-value=77 Score=28.78 Aligned_cols=50 Identities=12% Similarity=0.084 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCC-eEEEE
Q psy5052 30 WSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPI-DVRFI 80 (172)
Q Consensus 30 ~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~-~~~~i 80 (172)
+..+.+-|+.+++.|+ ++-|-.--....++.|++.+.+++.++|+ +.-..
T Consensus 436 ~~NL~~Hi~n~~~fg~-pvVVaiN~F~~Dt~~Ei~~v~~~~~~~ga~~~~~~ 486 (637)
T PLN02759 436 CVNLARHIENTKSYGV-NVVVAINMFATDTEAELEAVRQAALAAGAFDAVLC 486 (637)
T ss_pred hhhHHHHHHHHHHcCC-CeEEEecCCCCCCHHHHHHHHHHHHHcCCCcEEEe
Confidence 5666677777788898 66555434444567899999999999994 65443
No 282
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=46.10 E-value=63 Score=26.21 Aligned_cols=57 Identities=11% Similarity=0.218 Sum_probs=44.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHH-HHHHHHHHhcCCCeE-EEEeee
Q psy5052 27 RKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDE-ILDFVLLTRDRPIDV-RFIEYM 83 (172)
Q Consensus 27 ~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~e-i~~l~~~a~~~g~~~-~~i~~~ 83 (172)
..+++..+++++.+.+.....+-|.=.++|+.|..+ ++.+-+.+++.|+.| .+-||+
T Consensus 221 ~~~~E~~irNl~~ii~~~~~~lViDHHllRD~~y~e~l~~l~~~~~~~GV~v~TaAE~l 279 (304)
T COG2248 221 PKSLEKGIRNLERIIEETNATLVIDHHLLRDKNYREFLEELFERAEKAGVEVATAAEFL 279 (304)
T ss_pred hHHHHHHHHHHHHHHHhCcceEEEeehhhcCCCHHHHHHHHHhhHhhcCceeeeHHHHc
Confidence 357888899999988765446778888899889986 778999999999986 333554
No 283
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=45.84 E-value=46 Score=28.09 Aligned_cols=73 Identities=19% Similarity=0.353 Sum_probs=0.0
Q ss_pred ChhcCCCeEEEeeeCCCH-hhhccccCC----------CCHHHHHHHHHHHHHcCCCcEEEEEEEecCCC-HHHHHHHHH
Q psy5052 1 YKKAGLDSINISLDTLKP-DKYEFITRR----------KGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFN-DDEILDFVL 68 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~-e~~~~i~g~----------~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N-~~ei~~l~~ 68 (172)
|.+||-+-|.|++.+... +....|+.. ..+..+++++ ++|...+.||-=-+. + .+.+.++++
T Consensus 51 L~~aGceiVRvav~~~~~a~al~~I~~~~~iPlvADIHFd~~lAl~a~----~~G~~~iRINPGNig--~~~~~v~~vv~ 124 (360)
T PRK00366 51 LARAGCEIVRVAVPDMEAAAALPEIKKQLPVPLVADIHFDYRLALAAA----EAGADALRINPGNIG--KRDERVREVVE 124 (360)
T ss_pred HHHcCCCEEEEccCCHHHHHhHHHHHHcCCCCEEEecCCCHHHHHHHH----HhCCCEEEECCCCCC--chHHHHHHHHH
Q ss_pred HHhcCCCeEEE
Q psy5052 69 LTRDRPIDVRF 79 (172)
Q Consensus 69 ~a~~~g~~~~~ 79 (172)
.|+++++.+|.
T Consensus 125 ~ak~~~ipIRI 135 (360)
T PRK00366 125 AAKDYGIPIRI 135 (360)
T ss_pred HHHHCCCCEEE
No 284
>PRK14847 hypothetical protein; Provisional
Probab=45.82 E-value=70 Score=26.76 Aligned_cols=71 Identities=8% Similarity=-0.126 Sum_probs=40.4
Q ss_pred cCCCeEEEeeeCCCHhhhccccCC--CCHHHHHHHHHHHHHcCCC----cEEEEEEEecCCCHHH---HHHHHHHHhc-C
Q psy5052 4 AGLDSINISLDTLKPDKYEFITRR--KGWSRVLAGIDLAVQLGYD----NLKVNVVVMKNFNDDE---ILDFVLLTRD-R 73 (172)
Q Consensus 4 aGl~~v~iSlds~~~e~~~~i~g~--~~~~~vl~~i~~~~~~g~~----~v~in~v~~~g~N~~e---i~~l~~~a~~-~ 73 (172)
++.+.|+|++-+.+-....+++.. ...+.+.++++.+++.|.. .+.|++..-. ....| +.++++.+.+ .
T Consensus 122 ~~~~~Vhi~~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~~~~ED-asRad~dfL~~~~~~a~~~~ 200 (333)
T PRK14847 122 SPRAIVHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRALADANPGTQWIYEYSPET-FSLAELDFAREVCDAVSAIW 200 (333)
T ss_pred CCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccccCCCceEEEEeeec-CCCCCHHHHHHHHHHHHHHh
Confidence 344668999887665444444431 2466777788888888430 2456666554 34344 4445554433 3
Q ss_pred CC
Q psy5052 74 PI 75 (172)
Q Consensus 74 g~ 75 (172)
|+
T Consensus 201 ga 202 (333)
T PRK14847 201 GP 202 (333)
T ss_pred CC
Confidence 64
No 285
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=45.25 E-value=68 Score=25.65 Aligned_cols=76 Identities=16% Similarity=0.212 Sum_probs=50.4
Q ss_pred hhcCCCeEEEeeeCCCH---------hhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCH--H-HHHHHHHH
Q psy5052 2 KKAGLDSINISLDTLKP---------DKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFND--D-EILDFVLL 69 (172)
Q Consensus 2 ~~aGl~~v~iSlds~~~---------e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~--~-ei~~l~~~ 69 (172)
.+.|+|.+-|-+-..|| ..++.+.++-+++++++.++.+++... .+.+ ++|--.|. + -++++++.
T Consensus 36 ~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~-~~p~--vlm~Y~N~i~~~G~e~f~~~ 112 (258)
T PRK13111 36 VEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDP-TIPI--VLMTYYNPIFQYGVERFAAD 112 (258)
T ss_pred HHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-CCCE--EEEecccHHhhcCHHHHHHH
Confidence 46788888888887665 223444544479999999999985433 2222 23332453 3 47789999
Q ss_pred HhcCCCeEEEE
Q psy5052 70 TRDRPIDVRFI 80 (172)
Q Consensus 70 a~~~g~~~~~i 80 (172)
+++.|++--++
T Consensus 113 ~~~aGvdGvii 123 (258)
T PRK13111 113 AAEAGVDGLII 123 (258)
T ss_pred HHHcCCcEEEE
Confidence 99999875555
No 286
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=45.00 E-value=1.2e+02 Score=27.31 Aligned_cols=48 Identities=17% Similarity=0.243 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEecCCC-HHHHHHHHHHHhcCCCeEEE
Q psy5052 30 WSRVLAGIDLAVQLGYDNLKVNVVVMKNFN-DDEILDFVLLTRDRPIDVRF 79 (172)
Q Consensus 30 ~~~vl~~i~~~~~~g~~~v~in~v~~~g~N-~~ei~~l~~~a~~~g~~~~~ 79 (172)
|..+.+-|+.+++.|+ ++-|-.=-.. .| +.|+..+.+||+++|+.+-.
T Consensus 358 l~NL~RHIenvr~FGv-PvVVAINKFd-~DTe~Ei~~I~~~c~e~Gv~va~ 406 (557)
T PRK13505 358 FANLERHIENIRKFGV-PVVVAINKFV-TDTDAEIAALKELCEELGVEVAL 406 (557)
T ss_pred HHHHHHHHHHHHHcCC-CEEEEEeCCC-CCCHHHHHHHHHHHHHcCCCEEE
Confidence 5555556666666777 5444322222 23 34899999999999997643
No 287
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=44.80 E-value=52 Score=23.50 Aligned_cols=52 Identities=13% Similarity=0.049 Sum_probs=32.8
Q ss_pred ChhcCCCeEEEeee---CC--CH-hhhccccCCC-CHHHHHHHHHHHHHcCCCcEEEEEEEe
Q psy5052 1 YKKAGLDSINISLD---TL--KP-DKYEFITRRK-GWSRVLAGIDLAVQLGYDNLKVNVVVM 55 (172)
Q Consensus 1 L~~aGl~~v~iSld---s~--~~-e~~~~i~g~~-~~~~vl~~i~~~~~~g~~~v~in~v~~ 55 (172)
|++++++.+.|-.. +. =| +++.. .++ ..+-+-+.++++++.|+ +|-+.+.+.
T Consensus 9 lk~~~v~si~i~a~~h~g~ayYPt~~~~~--hp~L~~Dllge~v~a~h~~Gi-rv~ay~~~~ 67 (132)
T PF14871_consen 9 LKEAHVNSITIFAKCHGGYAYYPTKVGPR--HPGLKRDLLGEQVEACHERGI-RVPAYFDFS 67 (132)
T ss_pred HHHhCCCEEEEEcccccEEEEccCCCCcC--CCCCCcCHHHHHHHHHHHCCC-EEEEEEeee
Confidence 57889998887322 11 11 12221 111 35667788999999999 788887765
No 288
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=44.78 E-value=17 Score=28.05 Aligned_cols=18 Identities=11% Similarity=0.102 Sum_probs=13.1
Q ss_pred HHHHHHHHhcCCCeEEEE
Q psy5052 63 ILDFVLLTRDRPIDVRFI 80 (172)
Q Consensus 63 i~~l~~~a~~~g~~~~~i 80 (172)
.+++++++++.++.+-..
T Consensus 105 ~~~~~~l~a~~~~~vV~m 122 (210)
T PF00809_consen 105 DPEMLPLAAEYGAPVVLM 122 (210)
T ss_dssp STTHHHHHHHHTSEEEEE
T ss_pred cchhhhhhhcCCCEEEEE
Confidence 567888888889865443
No 289
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=44.72 E-value=97 Score=24.03 Aligned_cols=47 Identities=26% Similarity=0.185 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHHHHc--CCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCe
Q psy5052 28 KGWSRVLAGIDLAVQL--GYDNLKVNVVVMKNFNDDEILDFVLLTRDRPID 76 (172)
Q Consensus 28 ~~~~~vl~~i~~~~~~--g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~ 76 (172)
+.++.+.+-|....++ |. ++++-.-.-. ++++++....+.+.+.|++
T Consensus 99 g~~~~v~~ei~~i~~~~~g~-~lKvIlE~~~-L~~~ei~~a~~ia~eaGAD 147 (211)
T TIGR00126 99 GNEEVVYDDIRAVVEACAGV-LLKVIIETGL-LTDEEIRKACEICIDAGAD 147 (211)
T ss_pred CcHHHHHHHHHHHHHHcCCC-eEEEEEecCC-CCHHHHHHHHHHHHHhCCC
Confidence 4677777777777753 66 6777433333 6778888899999999987
No 290
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=44.48 E-value=1.6e+02 Score=23.52 Aligned_cols=44 Identities=11% Similarity=-0.040 Sum_probs=30.9
Q ss_pred HHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEEE
Q psy5052 33 VLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRF 79 (172)
Q Consensus 33 vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~~ 79 (172)
..+-++.+.+.|+..|.|-+ +-.+.+.+.+.++++++.|..+.+
T Consensus 93 ~~~di~~~~~~g~~~iri~~---~~~~~~~~~~~i~~ak~~G~~v~~ 136 (275)
T cd07937 93 VELFVEKAAKNGIDIFRIFD---ALNDVRNLEVAIKAVKKAGKHVEG 136 (275)
T ss_pred HHHHHHHHHHcCCCEEEEee---cCChHHHHHHHHHHHHHCCCeEEE
Confidence 56678888888884444432 312446788999999999987765
No 291
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=44.32 E-value=89 Score=25.52 Aligned_cols=46 Identities=11% Similarity=0.068 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeE
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDV 77 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~ 77 (172)
.-+.+.++++.+.++|+ +.-+++..|+...+-.++.+.|++.|+.+
T Consensus 74 p~~~v~~~l~e~~~~gv---k~avI~s~Gf~~~~~~~l~~~a~~~girv 119 (291)
T PRK05678 74 PPPFAADAILEAIDAGI---DLIVCITEGIPVLDMLEVKAYLERKKTRL 119 (291)
T ss_pred CHHHHHHHHHHHHHCCC---CEEEEECCCCCHHHHHHHHHHHHHcCCEE
Confidence 35778888999988887 23334556666555557888888877653
No 292
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=44.25 E-value=1.4e+02 Score=23.73 Aligned_cols=55 Identities=16% Similarity=0.180 Sum_probs=35.3
Q ss_pred CHhhhccccCC------CCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEEEEee
Q psy5052 17 KPDKYEFITRR------KGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRFIEY 82 (172)
Q Consensus 17 ~~e~~~~i~g~------~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~~i~~ 82 (172)
-||...++|-. +..+++.+.|+.++++|+ +|++- +=+ + .+-++.|++.|++ .+|+
T Consensus 91 VPE~r~e~TTegGldv~~~~~~l~~~i~~L~~~gI-rvSLF--iDP-----~-~~qi~~A~~~Gad--~VEL 151 (239)
T PF03740_consen 91 VPEKREELTTEGGLDVAGNRDRLKPVIKRLKDAGI-RVSLF--IDP-----D-PEQIEAAKELGAD--RVEL 151 (239)
T ss_dssp E--SGGGBSTTSSB-TCGGHHHHHHHHHHHHHTT--EEEEE--E-S-------HHHHHHHHHTT-S--EEEE
T ss_pred CCCCCCCcCCCcCChhhcCHHHHHHHHHHHHhCCC-EEEEE--eCC-----C-HHHHHHHHHcCCC--EEEE
Confidence 36666777522 247889999999999998 67654 223 2 4567899999997 5555
No 293
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=44.17 E-value=93 Score=24.76 Aligned_cols=56 Identities=18% Similarity=0.213 Sum_probs=38.8
Q ss_pred CCHhhhccccCC------CCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEEEEee
Q psy5052 16 LKPDKYEFITRR------KGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRFIEY 82 (172)
Q Consensus 16 ~~~e~~~~i~g~------~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~~i~~ 82 (172)
+-||...++|-. +.++.+.+.++.++++|+ +|++-+ =+ + .+-++.|++.|++ .+|+
T Consensus 92 LVPE~r~E~TTegGldv~~~~~~l~~~i~~L~~~gI-rVSLFi--dP--~----~~qi~~A~~~GAd--~VEL 153 (239)
T PRK05265 92 LVPEKREELTTEGGLDVAGQFDKLKPAIARLKDAGI-RVSLFI--DP--D----PEQIEAAAEVGAD--RIEL 153 (239)
T ss_pred ECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCC-EEEEEe--CC--C----HHHHHHHHHhCcC--EEEE
Confidence 346677777521 257888899999999999 777653 12 2 3456788889987 4554
No 294
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=44.09 E-value=1.4e+02 Score=24.80 Aligned_cols=73 Identities=14% Similarity=0.185 Sum_probs=37.6
Q ss_pred hhcCCCeEEEeeeC-------CCH---hhhccccCC--CCHH---HHHHHHHHHHHcCCCcEEEEEEEe-------cCCC
Q psy5052 2 KKAGLDSINISLDT-------LKP---DKYEFITRR--KGWS---RVLAGIDLAVQLGYDNLKVNVVVM-------KNFN 59 (172)
Q Consensus 2 ~~aGl~~v~iSlds-------~~~---e~~~~i~g~--~~~~---~vl~~i~~~~~~g~~~v~in~v~~-------~g~N 59 (172)
+++|.|.|.|..-- ++| ..-|+.-|. +..+ +++++|+... |..+|.+.+..- .|.+
T Consensus 162 ~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~v--g~d~v~vRis~~~~~~~~~~~~~ 239 (338)
T cd02933 162 IEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAI--GADRVGIRLSPFGTFNDMGDSDP 239 (338)
T ss_pred HHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHh--CCCceEEEECccccCCCCCCCCC
Confidence 57899998886443 112 223332110 1223 4555555443 422344443321 1235
Q ss_pred HHHHHHHHHHHhcCCCe
Q psy5052 60 DDEILDFVLLTRDRPID 76 (172)
Q Consensus 60 ~~ei~~l~~~a~~~g~~ 76 (172)
.+|..++++++.+.|++
T Consensus 240 ~ee~~~~~~~l~~~g~d 256 (338)
T cd02933 240 EATFSYLAKELNKRGLA 256 (338)
T ss_pred HHHHHHHHHHHHHcCCc
Confidence 56777788888888875
No 295
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
Probab=44.07 E-value=65 Score=24.95 Aligned_cols=9 Identities=22% Similarity=0.475 Sum_probs=5.6
Q ss_pred eEEEeeeCC
Q psy5052 8 SINISLDTL 16 (172)
Q Consensus 8 ~v~iSlds~ 16 (172)
...||+|..
T Consensus 84 aFtVsVd~~ 92 (203)
T COG0108 84 AFTVSVDAR 92 (203)
T ss_pred ceEEEEecc
Confidence 456777754
No 296
>PRK12465 xylose isomerase; Provisional
Probab=44.02 E-value=2e+02 Score=25.01 Aligned_cols=73 Identities=23% Similarity=0.226 Sum_probs=43.0
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEecCC-------CH---HHHH---HHHH----HHhcCCCeEEE-EeeeeCCCCCC
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVVVMKNF-------ND---DEIL---DFVL----LTRDRPIDVRF-IEYMPFSGNQW 90 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v~~~g~-------N~---~ei~---~l~~----~a~~~g~~~~~-i~~~p~g~~~~ 90 (172)
+.+++.++|+.+++.|-. |+|+.-|. |. .++. ++++ ++.+.|.+.+| ||+-|....+.
T Consensus 174 A~~qvk~alD~~~eLGge----nyV~WGGREGye~l~ntd~~~e~d~~a~fl~ma~dY~~~iGf~g~f~IEPKP~EPr~h 249 (445)
T PRK12465 174 AAVQVKAAIDATVELGGE----NYVFWGGREGYACLHNTQMKREQDNMARFLTLARDYGRSIGFKGNFLIEPKPMEPMKH 249 (445)
T ss_pred HHHHHHHHHHHHHHhCCC----EEEECCCccchhhhhhhhHHHHHHHHHHHHHHHHHHhHhcCCCceEEeccCCCCCCcc
Confidence 478999999999998863 45555442 11 1233 4553 55567776554 67777654322
Q ss_pred CCCCCCCHHHHHHHHHH
Q psy5052 91 NNTKIMPFSEMLTKIKE 107 (172)
Q Consensus 91 ~~~~~~~~~e~~~~l~~ 107 (172)
....+....+..|++
T Consensus 250 --qyd~d~aT~l~fL~~ 264 (445)
T PRK12465 250 --QYDFDSATVIGFLRQ 264 (445)
T ss_pred --ccCCcHHHHHHHHHH
Confidence 233455655666655
No 297
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=44.01 E-value=2e+02 Score=24.45 Aligned_cols=49 Identities=18% Similarity=0.192 Sum_probs=33.2
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeE
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDV 77 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~ 77 (172)
..+...+-|+.++++||.-+.+|+--....+.+.+..+.+-|+..|.++
T Consensus 15 t~~dw~~di~~A~~~GIDgFaLNig~~d~~~~~~l~~a~~AA~~~gFKl 63 (386)
T PF03659_consen 15 TQEDWEADIRLAQAAGIDGFALNIGSSDSWQPDQLADAYQAAEAVGFKL 63 (386)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCcccHHHHHHHHHHHHhcCCEE
Confidence 4566667777888888766777765333355667777777777777544
No 298
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=43.96 E-value=27 Score=24.35 Aligned_cols=39 Identities=21% Similarity=0.372 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhc
Q psy5052 30 WSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRD 72 (172)
Q Consensus 30 ~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~ 72 (172)
-+.+.+.++.+.+.|. ++-+-| -|++++++..+-+++++
T Consensus 77 p~~~~~~~~~~~~~g~-~~ViGT---TG~~~~~~~~l~~~a~~ 115 (124)
T PF01113_consen 77 PDAVYDNLEYALKHGV-PLVIGT---TGFSDEQIDELEELAKK 115 (124)
T ss_dssp HHHHHHHHHHHHHHT--EEEEE----SSSHHHHHHHHHHHTTT
T ss_pred hHHhHHHHHHHHhCCC-CEEEEC---CCCCHHHHHHHHHHhcc
Confidence 5666677888888887 565554 36777788777777776
No 299
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=43.93 E-value=96 Score=28.13 Aligned_cols=51 Identities=18% Similarity=0.107 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHh-cCCC-eEEEEe
Q psy5052 30 WSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTR-DRPI-DVRFIE 81 (172)
Q Consensus 30 ~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~-~~g~-~~~~i~ 81 (172)
+..+.+-|+.+++.|+ ++-|..--....++.|++.+.++++ +.|+ .+-..+
T Consensus 423 ~~NL~~Hien~~~fgv-pvVVAIN~F~tDT~~Ei~~i~~~~~~~~ga~~~~~s~ 475 (625)
T PTZ00386 423 LSNLQRHIQNIRKFGV-PVVVALNKFSTDTDAELELVKELALQEGGAADVVVTD 475 (625)
T ss_pred HHHHHHHHHHHHHcCC-CeEEEecCCCCCCHHHHHHHHHHHHHhcCCccEEEec
Confidence 5666667777888898 7666654455456789999999999 8894 554433
No 300
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=43.81 E-value=1.2e+02 Score=24.74 Aligned_cols=49 Identities=14% Similarity=0.276 Sum_probs=32.6
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEE--------------Ee-c----------C-CCHHHHHHHHHHHhcCCCeE
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVV--------------VM-K----------N-FNDDEILDFVLLTRDRPIDV 77 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v--------------~~-~----------g-~N~~ei~~l~~~a~~~g~~~ 77 (172)
+.+.+.+-|+.+...++..+.+-.+ +. + | .+.+|+.+++++|+++|+.|
T Consensus 14 ~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~rgI~v 88 (303)
T cd02742 14 SVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAARGIEV 88 (303)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHcCCEE
Confidence 5777777788777766643333322 10 1 1 35579999999999999864
No 301
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.64 E-value=1.8e+02 Score=23.75 Aligned_cols=67 Identities=15% Similarity=0.095 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEecCCCHH---HHHHHHHHHhcCCCeEEEEeeeeCCCCCCCCCCCCCHHHHHHHHH
Q psy5052 30 WSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDD---EILDFVLLTRDRPIDVRFIEYMPFSGNQWNNTKIMPFSEMLTKIK 106 (172)
Q Consensus 30 ~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~---ei~~l~~~a~~~g~~~~~i~~~p~g~~~~~~~~~~~~~e~~~~l~ 106 (172)
.+++.+-++.+++.|+ ..++-+++.- -+.+ .+..-.+.|++.|+....+++ ++..+.+|+++.|+
T Consensus 16 ~~~lk~~i~~l~~~g~-~p~Laii~vg-~d~as~~Yv~~k~k~~~~~Gi~~~~~~l----------~~~~~~~~l~~~I~ 83 (285)
T PRK14189 16 RAEAAQRAAALTARGH-QPGLAVILVG-DNPASQVYVRNKVKACEDNGFHSLKDRY----------PADLSEAELLARID 83 (285)
T ss_pred HHHHHHHHHHHHhCCC-CCeEEEEEeC-CCchHHHHHHHHHHHHHHcCCEEEEEEC----------CCCCCHHHHHHHHH
Confidence 3556667777777787 5577666553 2322 366788889999998777766 12345666666666
Q ss_pred Hh
Q psy5052 107 EA 108 (172)
Q Consensus 107 ~~ 108 (172)
+.
T Consensus 84 ~l 85 (285)
T PRK14189 84 EL 85 (285)
T ss_pred HH
Confidence 54
No 302
>TIGR02630 xylose_isom_A xylose isomerase. Members of this family are the enzyme xylose isomerase (5.3.1.5), which interconverts D-xylose and D-xylulose.
Probab=43.63 E-value=2.1e+02 Score=24.88 Aligned_cols=73 Identities=15% Similarity=0.138 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEecCC---------CHH----H----HHHHHHHHhcCCCeEEE-EeeeeCCCCCC
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVVVMKNF---------NDD----E----ILDFVLLTRDRPIDVRF-IEYMPFSGNQW 90 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v~~~g~---------N~~----e----i~~l~~~a~~~g~~~~~-i~~~p~g~~~~ 90 (172)
+.++|.++|+.+++.|-. |+|+..|. +.. . +..+++++.+.|.+.+| ||.-|....+
T Consensus 163 A~~qvk~alD~~~eLGge----nyV~WgGREGye~~lntD~~~e~d~~~~~l~~~~dYa~~iGf~~~f~IEPKP~EPr~- 237 (434)
T TIGR02630 163 AAAQVKKALEVTKKLGGE----NYVFWGGREGYETLLNTDMKRELDHLARFLHMAVDYAKKIGFKGQFLIEPKPKEPTK- 237 (434)
T ss_pred HHHHHHHHHHHHHHhCCC----eEEECCCccccccccccCHHHHHHHHHHHHHHHHHHhhhcCCCceEEeccCCCCccc-
Confidence 588999999999998853 34444321 111 1 44566777788887654 6776665432
Q ss_pred CCCCCCCHHHHHHHHHH
Q psy5052 91 NNTKIMPFSEMLTKIKE 107 (172)
Q Consensus 91 ~~~~~~~~~e~~~~l~~ 107 (172)
.....+....+..|++
T Consensus 238 -hqyd~d~at~l~fl~~ 253 (434)
T TIGR02630 238 -HQYDFDAATVYAFLKK 253 (434)
T ss_pred -ccccccHHHHHHHHHH
Confidence 2234556666666665
No 303
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=43.60 E-value=48 Score=27.31 Aligned_cols=50 Identities=16% Similarity=0.118 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEE
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVR 78 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~ 78 (172)
+.+++++.++.+.+.|++.+.+..-..+....+.+.++++.+++.+..++
T Consensus 73 s~eei~~~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~li~~Ik~~~~~i~ 122 (340)
T TIGR03699 73 SVEEILQKIEELVAYGGTQILLQGGVNPDLGLDYYEDLFRAIKARFPHIH 122 (340)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcC
Confidence 67889999988888887545443222222334456677777776543333
No 304
>COG4639 Predicted kinase [General function prediction only]
Probab=43.53 E-value=84 Score=23.57 Aligned_cols=75 Identities=13% Similarity=0.233 Sum_probs=44.5
Q ss_pred eEEEeeeCCCHhh---hccccCCCC----HHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEEEE
Q psy5052 8 SINISLDTLKPDK---YEFITRRKG----WSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRFI 80 (172)
Q Consensus 8 ~v~iSlds~~~e~---~~~i~g~~~----~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~~i 80 (172)
.-.+|||++.... ..+..-.++ |+.+.+-++.....|- ..-|+.+-.+ ..+...++++|+.+|+...+|
T Consensus 26 ~~~lsld~~r~~lg~~~~~e~sqk~~~~~~~~l~~~l~qrl~~Gk-~tiidAtn~r---r~~r~~l~~La~~y~~~~~~i 101 (168)
T COG4639 26 NYVLSLDDLRLLLGVSASKENSQKNDELVWDILYKQLEQRLRRGK-FTIIDATNLR---REDRRKLIDLAKAYGYKIYAI 101 (168)
T ss_pred cceecHHHHHHHhhhchhhhhccccHHHHHHHHHHHHHHHHHcCC-eEEEEcccCC---HHHHHHHHHHHHHhCCeEEEE
Confidence 3457887776532 222222233 4555555555556774 4555543322 356788999999999988777
Q ss_pred ee-eeCC
Q psy5052 81 EY-MPFS 86 (172)
Q Consensus 81 ~~-~p~g 86 (172)
.| .|..
T Consensus 102 vfdtp~~ 108 (168)
T COG4639 102 VFDTPLE 108 (168)
T ss_pred EEeCCHH
Confidence 66 4654
No 305
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.33 E-value=1.8e+02 Score=23.71 Aligned_cols=67 Identities=10% Similarity=0.035 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEecCCCHH---HHHHHHHHHhcCCCeEEEEeeeeCCCCCCCCCCCCCHHHHHHHHH
Q psy5052 30 WSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDD---EILDFVLLTRDRPIDVRFIEYMPFSGNQWNNTKIMPFSEMLTKIK 106 (172)
Q Consensus 30 ~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~---ei~~l~~~a~~~g~~~~~i~~~p~g~~~~~~~~~~~~~e~~~~l~ 106 (172)
.+++.+.++.+++.|+ .-++-+++. |-+.+ .+....+.|++.|+....+++- +..+.+|+++.|+
T Consensus 16 ~~~l~~~v~~l~~~g~-~P~Laii~v-g~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~----------~~~~~~el~~~I~ 83 (284)
T PRK14190 16 REQLKEEVVKLKEQGI-VPGLAVILV-GDDPASHSYVRGKKKAAEKVGIYSELYEFP----------ADITEEELLALID 83 (284)
T ss_pred HHHHHHHHHHHHhCCC-CCeEEEEEe-CCCHHHHHHHHHHHHHHHHcCCEEEEEECC----------CCCCHHHHHHHHH
Confidence 3556667777777787 456666555 33332 3667788899999987777661 2345666777766
Q ss_pred Hh
Q psy5052 107 EA 108 (172)
Q Consensus 107 ~~ 108 (172)
+.
T Consensus 84 ~l 85 (284)
T PRK14190 84 RL 85 (284)
T ss_pred HH
Confidence 54
No 306
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=43.15 E-value=1.2e+02 Score=24.01 Aligned_cols=74 Identities=18% Similarity=0.220 Sum_probs=0.0
Q ss_pred ChhcCCCeEEEe--------eeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEE-EecCCCHHH--------H
Q psy5052 1 YKKAGLDSINIS--------LDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVV-VMKNFNDDE--------I 63 (172)
Q Consensus 1 L~~aGl~~v~iS--------lds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v-~~~g~N~~e--------i 63 (172)
|+++||.-..+. +-+.+++.+++ .++.+.+.|+.+.+.|.+.|.+... ...+....+ +
T Consensus 61 l~~~gl~i~~~~~~~~~~~~l~~~~~~~r~~-----~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l 135 (279)
T TIGR00542 61 IIETGVRIPSMCLSAHRRFPLGSKDKAVRQQ-----GLEIMEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRRFREGL 135 (279)
T ss_pred HHHcCCCceeeecCCCccCcCCCcCHHHHHH-----HHHHHHHHHHHHHHhCCCEEEecCcccccCcCCHHHHHHHHHHH
Q ss_pred HHHHHHHhcCCCeEEE
Q psy5052 64 LDFVLLTRDRPIDVRF 79 (172)
Q Consensus 64 ~~l~~~a~~~g~~~~~ 79 (172)
.+++++|++.|+.+-+
T Consensus 136 ~~l~~~A~~~Gv~l~l 151 (279)
T TIGR00542 136 KEAVELAARAQVTLAV 151 (279)
T ss_pred HHHHHHHHHcCCEEEE
No 307
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=42.97 E-value=1e+02 Score=24.75 Aligned_cols=80 Identities=15% Similarity=0.233 Sum_probs=53.0
Q ss_pred ChhcCCCeEEEeeeCCCHh---------hhccccCCCCHHHHHHHHHHHHHc-CCCcEEEEEEEecCCCH--H-HHHHHH
Q psy5052 1 YKKAGLDSINISLDTLKPD---------KYEFITRRKGWSRVLAGIDLAVQL-GYDNLKVNVVVMKNFND--D-EILDFV 67 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e---------~~~~i~g~~~~~~vl~~i~~~~~~-g~~~v~in~v~~~g~N~--~-ei~~l~ 67 (172)
|.++|.|.+-|-+-..||- .++.+..+-+++++++.++.+++. .+ ++ ++|--.|. . -+++++
T Consensus 38 l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~-p~----vlm~Y~N~i~~~G~e~F~ 112 (263)
T CHL00200 38 LDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKA-PI----VIFTYYNPVLHYGINKFI 112 (263)
T ss_pred HHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCC-CE----EEEecccHHHHhCHHHHH
Confidence 3468888888888777762 233344444788999999988743 33 33 24433464 2 478899
Q ss_pred HHHhcCCCeEEEEeeeeC
Q psy5052 68 LLTRDRPIDVRFIEYMPF 85 (172)
Q Consensus 68 ~~a~~~g~~~~~i~~~p~ 85 (172)
+.+++.|++--.+.-.|.
T Consensus 113 ~~~~~aGvdgviipDLP~ 130 (263)
T CHL00200 113 KKISQAGVKGLIIPDLPY 130 (263)
T ss_pred HHHHHcCCeEEEecCCCH
Confidence 999999998666655554
No 308
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=42.62 E-value=24 Score=27.66 Aligned_cols=54 Identities=22% Similarity=0.282 Sum_probs=36.6
Q ss_pred ChhcCCCeEEEee--eCC------CHhhhcccc-CCCCHHHHHHHHHHHHHcCCCcEEEEEEEe
Q psy5052 1 YKKAGLDSINISL--DTL------KPDKYEFIT-RRKGWSRVLAGIDLAVQLGYDNLKVNVVVM 55 (172)
Q Consensus 1 L~~aGl~~v~iSl--ds~------~~e~~~~i~-g~~~~~~vl~~i~~~~~~g~~~v~in~v~~ 55 (172)
|++.|++.|-+|= .+. .+.-|..+. .-|+.++..+-|++|++.|+ +|-+-+|+.
T Consensus 13 l~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi-~VilD~V~N 75 (316)
T PF00128_consen 13 LKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGI-KVILDVVPN 75 (316)
T ss_dssp HHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTC-EEEEEEETS
T ss_pred HHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccc-eEEEeeecc
Confidence 5678888887651 111 112233333 23679999999999999999 898888864
No 309
>PRK09389 (R)-citramalate synthase; Provisional
Probab=42.50 E-value=43 Score=29.43 Aligned_cols=79 Identities=19% Similarity=0.238 Sum_probs=46.6
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccC---C--C----CHHH-HHHHHHHHHHcCCCcEEEEEEEec-------CC----C
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITR---R--K----GWSR-VLAGIDLAVQLGYDNLKVNVVVMK-------NF----N 59 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g---~--~----~~~~-vl~~i~~~~~~g~~~v~in~v~~~-------g~----N 59 (172)
|.++|++.|-+..-+.++.-++.++. . + .|-+ ..+.|+++.++|.+.|.+-...-. +. +
T Consensus 33 L~~~Gv~~IE~G~p~~~~~d~e~v~~i~~~~~~~~i~a~~r~~~~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~ 112 (488)
T PRK09389 33 LDELGVDVIEAGSAITSEGEREAIKAVTDEGLNAEICSFARAVKVDIDAALECDVDSVHLVVPTSDLHIEYKLKKTREEV 112 (488)
T ss_pred HHHcCCCEEEEeCCcCCHHHHHHHHHHHhcCCCcEEEeecccCHHHHHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHH
Confidence 46899999998877666643333321 0 0 2322 367788899999843332221110 01 1
Q ss_pred HHHHHHHHHHHhcCCCeEEE
Q psy5052 60 DDEILDFVLLTRDRPIDVRF 79 (172)
Q Consensus 60 ~~ei~~l~~~a~~~g~~~~~ 79 (172)
.+.+.+.+++|++.|..+.|
T Consensus 113 l~~~~~~v~~ak~~g~~v~~ 132 (488)
T PRK09389 113 LETAVEAVEYAKDHGLIVEL 132 (488)
T ss_pred HHHHHHHHHHHHHCCCEEEE
Confidence 13466788999999987765
No 310
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=42.49 E-value=56 Score=25.56 Aligned_cols=52 Identities=13% Similarity=0.241 Sum_probs=36.9
Q ss_pred CCHHHHHHHHHHHHHcCCCcEEEEEEEecCC------------------CHHHHHHHHHHHhcCCCeEEE
Q psy5052 28 KGWSRVLAGIDLAVQLGYDNLKVNVVVMKNF------------------NDDEILDFVLLTRDRPIDVRF 79 (172)
Q Consensus 28 ~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~------------------N~~ei~~l~~~a~~~g~~~~~ 79 (172)
|+|+.+.+-|..+++.|++.|-++-+.-.+. +.+|+.+|++-|.++|+.|-+
T Consensus 1 Gd~~gi~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~Vil 70 (316)
T PF00128_consen 1 GDFRGIIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVIL 70 (316)
T ss_dssp SSHHHHHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCHHHHHHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEE
Confidence 4688899999999999986555553333210 115788999999999998754
No 311
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=42.38 E-value=83 Score=26.16 Aligned_cols=45 Identities=24% Similarity=0.298 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHHHc---CCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCe
Q psy5052 29 GWSRVLAGIDLAVQL---GYDNLKVNVVVMKNFNDDEILDFVLLTRDRPID 76 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~---g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~ 76 (172)
.+.+++++++..... .+ +|.+-+. ++...+++.++++.+.+.|++
T Consensus 193 ~~~eiv~aVr~~~~~~~~~~-PV~vKls--p~~~~~~~~~ia~~l~~~Gad 240 (344)
T PRK05286 193 ALDELLAALKEAQAELHGYV-PLLVKIA--PDLSDEELDDIADLALEHGID 240 (344)
T ss_pred HHHHHHHHHHHHHhccccCC-ceEEEeC--CCCCHHHHHHHHHHHHHhCCc
Confidence 466666777666542 25 6666544 445666888999998888986
No 312
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=42.20 E-value=98 Score=21.30 Aligned_cols=48 Identities=23% Similarity=0.225 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEEEEeee
Q psy5052 32 RVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRFIEYM 83 (172)
Q Consensus 32 ~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~~i~~~ 83 (172)
.+.+.++.+.+.|. .+-|..+ ..+..+...+.+++++.|+.+.++.+.
T Consensus 58 ~~~~~~~~~l~~g~-~~vvd~~---~~~~~~r~~~~~~~~~~~~~~~~v~l~ 105 (143)
T PF13671_consen 58 ILNAAIRKALRNGN-SVVVDNT---NLSREERARLRELARKHGYPVRVVYLD 105 (143)
T ss_dssp HHHHHHHHHHHTT--EEEEESS-----SHHHHHHHHHHHHHCTEEEEEEEEC
T ss_pred HHHHHHHHHHHcCC-CceeccC---cCCHHHHHHHHHHHHHcCCeEEEEEEE
Confidence 33456666677886 5444322 134467889999999999988887764
No 313
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional
Probab=42.10 E-value=97 Score=24.66 Aligned_cols=72 Identities=22% Similarity=0.270 Sum_probs=43.9
Q ss_pred CeEEEeeeCCCHhhhccccCC-------CCHHHHHHHHHHHHHcCCCcEEEEEEEecCC--CHHHHHHHHHHHh------
Q psy5052 7 DSINISLDTLKPDKYEFITRR-------KGWSRVLAGIDLAVQLGYDNLKVNVVVMKNF--NDDEILDFVLLTR------ 71 (172)
Q Consensus 7 ~~v~iSlds~~~e~~~~i~g~-------~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~--N~~ei~~l~~~a~------ 71 (172)
..|.|=+||= ..+.+-+|- ..++.+.+.++.+.+.|++.|++=.-=+.++ ..+|+..|++++.
T Consensus 12 ~HVAiImDGN--rRwA~~~gl~~~~GH~~G~~~l~~i~~~~~~~gI~~lT~YaFS~EN~kR~~~Ev~~Lm~l~~~~l~~~ 89 (242)
T PRK14838 12 QHIAIIMDGN--GRWAKERGKERSFGHQAGAETVHIITEEAARLGVKFLTLYTFSTENWNRPSDEVAALMSLLLDSIEEE 89 (242)
T ss_pred CEEEEeccCC--HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeechhhcCCCHHHHHHHHHHHHHHHHHH
Confidence 4566666663 233333331 1588999999999999996455443222222 2357777777754
Q ss_pred ---cCCCeEEEE
Q psy5052 72 ---DRPIDVRFI 80 (172)
Q Consensus 72 ---~~g~~~~~i 80 (172)
+.|+.++++
T Consensus 90 ~~~~~~irir~i 101 (242)
T PRK14838 90 TFMKNNIRFRII 101 (242)
T ss_pred HHHHcCcEEEEE
Confidence 467888776
No 314
>PRK06852 aldolase; Validated
Probab=42.05 E-value=1.8e+02 Score=24.01 Aligned_cols=64 Identities=11% Similarity=-0.114 Sum_probs=41.0
Q ss_pred CCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCH------HHHHHHHHHHhcCCCeE
Q psy5052 6 LDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFND------DEILDFVLLTRDRPIDV 77 (172)
Q Consensus 6 l~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~------~ei~~l~~~a~~~g~~~ 77 (172)
.+.|.+.+.--++...+ .++.+-+..+.+.+.|+ ++-+ ++.-||.+. +-+...++.+.++|+++
T Consensus 135 AdAV~v~v~~Gs~~E~~------ml~~l~~v~~ea~~~Gl-Pll~-~~yprG~~i~~~~~~~~ia~aaRiaaELGADI 204 (304)
T PRK06852 135 ILGVGYTIYLGSEYESE------MLSEAAQIIYEAHKHGL-IAVL-WIYPRGKAVKDEKDPHLIAGAAGVAACLGADF 204 (304)
T ss_pred ceEEEEEEecCCHHHHH------HHHHHHHHHHHHHHhCC-cEEE-EeeccCcccCCCccHHHHHHHHHHHHHHcCCE
Confidence 55566666544433322 36677778888999999 7655 445566432 23666778888999884
No 315
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.90 E-value=1.9e+02 Score=23.59 Aligned_cols=67 Identities=16% Similarity=0.136 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEecCCCHH---HHHHHHHHHhcCCCeEEEEeeeeCCCCCCCCCCCCCHHHHHHHHH
Q psy5052 30 WSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDD---EILDFVLLTRDRPIDVRFIEYMPFSGNQWNNTKIMPFSEMLTKIK 106 (172)
Q Consensus 30 ~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~---ei~~l~~~a~~~g~~~~~i~~~p~g~~~~~~~~~~~~~e~~~~l~ 106 (172)
.+++.+-++.+++.|+ .-++-+++.- -+.+ .+..-.+.|++.|+....+.+- +..+.+|+++.|+
T Consensus 15 ~~~ik~~i~~l~~~g~-~P~Laii~vg-~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~----------~~~~~~el~~~I~ 82 (284)
T PRK14170 15 QEKVTREVAELVKEGK-KPGLAVVLVG-DNQASRTYVRNKQKRTEEAGMKSVLIELP----------ENVTEEKLLSVVE 82 (284)
T ss_pred HHHHHHHHHHHHhCCC-CCeEEEEEeC-CCHHHHHHHHHHHHHHHHcCCEEEEEECC----------CCCCHHHHHHHHH
Confidence 3556667777777787 4566665543 3332 3667888899999988777661 2345667777776
Q ss_pred Hh
Q psy5052 107 EA 108 (172)
Q Consensus 107 ~~ 108 (172)
+.
T Consensus 83 ~l 84 (284)
T PRK14170 83 EL 84 (284)
T ss_pred HH
Confidence 64
No 316
>PRK14847 hypothetical protein; Provisional
Probab=41.89 E-value=1.2e+02 Score=25.33 Aligned_cols=90 Identities=12% Similarity=0.118 Sum_probs=48.0
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCC--CcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEE
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGY--DNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVR 78 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~--~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~ 78 (172)
|.++|++.|-+++-+++++.++ +++.+.+.+. ..+.| +++.| ...++|..-++-..+.+...
T Consensus 63 L~~lGVd~IEvG~Pa~s~~e~e-------------~ir~I~~~~~~~~~~~i-~~~~r-~~~~dId~a~e~~~~~~~~~- 126 (333)
T PRK14847 63 LVAVGLKEIEVAFPSASQTDFD-------------FVRKLIDERRIPDDVTI-EALTQ-SRPDLIARTFEALAGSPRAI- 126 (333)
T ss_pred HHHcCCCEEEeeCCCCCHHHHH-------------HHHHHHHhCCCCCCcEE-EEEec-CcHHHHHHHHHHhCCCCCCE-
Confidence 4578888888888887766543 4444444442 12333 34556 57778877777665443332
Q ss_pred EEeeeeCCCCCCCCCCCCCHHHHHHHHH
Q psy5052 79 FIEYMPFSGNQWNNTKIMPFSEMLTKIK 106 (172)
Q Consensus 79 ~i~~~p~g~~~~~~~~~~~~~e~~~~l~ 106 (172)
+.-+.|+..-.-......+.+++++.+.
T Consensus 127 Vhi~~p~Sd~h~~~kl~~s~~~vl~~~~ 154 (333)
T PRK14847 127 VHLYNPIAPQWRRIVFGMSRAEIKEIAL 154 (333)
T ss_pred EEEEecCCHHHHHHHhCCCHHHHHHHHH
Confidence 2235566542111111244555555443
No 317
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=41.73 E-value=65 Score=26.81 Aligned_cols=52 Identities=13% Similarity=0.190 Sum_probs=35.0
Q ss_pred ChhcCCCeEEEeeeCCCH-hh-hccccC-CCCHHHHHHHHHHHHHcCCCcEEEEEEE
Q psy5052 1 YKKAGLDSINISLDTLKP-DK-YEFITR-RKGWSRVLAGIDLAVQLGYDNLKVNVVV 54 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~-e~-~~~i~g-~~~~~~vl~~i~~~~~~g~~~v~in~v~ 54 (172)
||++|+..|.+-+=- +| +. -...-| .+++.++++--+++++.|+ +|-+.+.-
T Consensus 72 LK~~GvNyvRlRvwn-dP~dsngn~yggGnnD~~k~ieiakRAk~~Gm-KVl~dFHY 126 (403)
T COG3867 72 LKNHGVNYVRLRVWN-DPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGM-KVLLDFHY 126 (403)
T ss_pred HHHcCcCeEEEEEec-CCccCCCCccCCCcchHHHHHHHHHHHHhcCc-EEEeeccc
Confidence 688999988766542 22 11 111222 2478999999999999999 78888653
No 318
>KOG2463|consensus
Probab=41.57 E-value=29 Score=28.95 Aligned_cols=34 Identities=18% Similarity=0.415 Sum_probs=23.6
Q ss_pred eEEEEcCCCCCcccCCC-------ceeeccCCcEEecCCCC
Q psy5052 134 QVGFITSMTEHFCGTCN-------RLRLMADGSLKVCLFGN 167 (172)
Q Consensus 134 ~~g~i~~~~~~~C~~c~-------~~~i~~~G~v~pC~~~~ 167 (172)
++.+.+-....||..|. .+.|++||.+.+=+..+
T Consensus 248 Cfsit~~m~k~FCp~CG~~TL~K~aVsv~~dG~~~~h~k~r 288 (376)
T KOG2463|consen 248 CFSITSEMPKDFCPSCGHKTLTKCAVSVDEDGNGQTHFKKR 288 (376)
T ss_pred eeEecCccchhcccccCCCeeeEEEEEecCCCceeEEeecc
Confidence 44444444567999985 36799999998876644
No 319
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.20 E-value=2e+02 Score=23.50 Aligned_cols=67 Identities=10% Similarity=0.003 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEecCCCHH---HHHHHHHHHhcCCCeEEEEeeeeCCCCCCCCCCCCCHHHHHHHHH
Q psy5052 30 WSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDD---EILDFVLLTRDRPIDVRFIEYMPFSGNQWNNTKIMPFSEMLTKIK 106 (172)
Q Consensus 30 ~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~---ei~~l~~~a~~~g~~~~~i~~~p~g~~~~~~~~~~~~~e~~~~l~ 106 (172)
.+++.+-++.+++.|+ .-++-+++.- -+.+ .+..-.+.|+++|+....+++- +..+.+|+++.|+
T Consensus 14 ~~~l~~~v~~l~~~g~-~P~Laii~vg-~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~----------~~~t~~~l~~~I~ 81 (282)
T PRK14166 14 KEELKEKNQFLKSKGI-ESCLAVILVG-DNPASQTYVKSKAKACEECGIKSLVYHLN----------ENTTQNELLALIN 81 (282)
T ss_pred HHHHHHHHHHHHhCCC-CceEEEEEeC-CCHHHHHHHHHHHHHHHHcCCEEEEEECC----------CCCCHHHHHHHHH
Confidence 3556667777777787 4566655543 2332 3667888999999987777661 2345666767766
Q ss_pred Hh
Q psy5052 107 EA 108 (172)
Q Consensus 107 ~~ 108 (172)
+.
T Consensus 82 ~l 83 (282)
T PRK14166 82 TL 83 (282)
T ss_pred HH
Confidence 54
No 320
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=40.82 E-value=1.3e+02 Score=23.96 Aligned_cols=72 Identities=19% Similarity=0.233 Sum_probs=43.4
Q ss_pred CeEEEeeeCCCHhhhccccCC-------CCHHHHHHHHHHHHHcCCCcEEEEEEEecCCC--HHHHHHHHHHH-------
Q psy5052 7 DSINISLDTLKPDKYEFITRR-------KGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFN--DDEILDFVLLT------- 70 (172)
Q Consensus 7 ~~v~iSlds~~~e~~~~i~g~-------~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N--~~ei~~l~~~a------- 70 (172)
..|.|=+|+=. .+.+-+|- ..++.+.+.++.+.+.|++.|++=.--+.+++ .+|+..|+++.
T Consensus 16 ~HVAiImDGNr--RwAk~~g~~~~~GH~~G~~~l~~i~~~c~~lgI~~lTvYaFS~eN~~R~~~EV~~Lm~L~~~~l~~~ 93 (249)
T PRK14834 16 RHVAIIMDGNG--RWAKARGLPRAAGHRAGVEALRRVVRAAGELGIGYLTLFAFSSENWSRPASEVSDLFGLLRLFIRRD 93 (249)
T ss_pred CeEEEEecCch--HHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEEeccccCCCHHHHHHHHHHHHHHHHHH
Confidence 45666666632 23333321 25899999999999999965665443333232 34777665543
Q ss_pred ----hcCCCeEEEE
Q psy5052 71 ----RDRPIDVRFI 80 (172)
Q Consensus 71 ----~~~g~~~~~i 80 (172)
.+.|+.++++
T Consensus 94 ~~~~~~~~iri~vi 107 (249)
T PRK14834 94 LAELHRNGVRVRVI 107 (249)
T ss_pred HHHHHHCCcEEEEE
Confidence 3567777775
No 321
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=40.81 E-value=2.3e+02 Score=27.89 Aligned_cols=74 Identities=8% Similarity=0.128 Sum_probs=43.0
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEe-------c-CCCHHHHHHHHHHHhcCCCeEEEEeeeeCCCCCCCCCCCCCHHH
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVVVM-------K-NFNDDEILDFVLLTRDRPIDVRFIEYMPFSGNQWNNTKIMPFSE 100 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v~~-------~-g~N~~ei~~l~~~a~~~g~~~~~i~~~p~g~~~~~~~~~~~~~e 100 (172)
..+.+..+|+.++++|. .+..+...+ + -.|.+-+.++++-+.+.|++.- .+-.+-+. . .+....+
T Consensus 650 ~~~n~~~~~~~~~~~g~-~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~~Gad~I--~ikDt~Gl-l---~P~~~~~ 722 (1143)
T TIGR01235 650 WVENMRVGMDAVAEAGK-VVEAAICYTGDILDPARPKYDLKYYTNLAVELEKAGAHIL--GIKDMAGL-L---KPAAAKL 722 (1143)
T ss_pred CHHHHHHHHHHHHHcCC-EEEEEEEEeccCCCcCCCCCCHHHHHHHHHHHHHcCCCEE--EECCCcCC-c---CHHHHHH
Confidence 47888889999999997 676665554 1 1234445566666677888632 22222111 0 1223445
Q ss_pred HHHHHHHhC
Q psy5052 101 MLTKIKEAH 109 (172)
Q Consensus 101 ~~~~l~~~~ 109 (172)
+.+.|++.+
T Consensus 723 Lv~~lk~~~ 731 (1143)
T TIGR01235 723 LIKALREKT 731 (1143)
T ss_pred HHHHHHHhc
Confidence 666676665
No 322
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.74 E-value=2e+02 Score=23.45 Aligned_cols=67 Identities=10% Similarity=0.079 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEecCCCHH---HHHHHHHHHhcCCCeEEEEeeeeCCCCCCCCCCCCCHHHHHHHHH
Q psy5052 30 WSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDD---EILDFVLLTRDRPIDVRFIEYMPFSGNQWNNTKIMPFSEMLTKIK 106 (172)
Q Consensus 30 ~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~---ei~~l~~~a~~~g~~~~~i~~~p~g~~~~~~~~~~~~~e~~~~l~ 106 (172)
.+++.+.++.+++.|+ ..++-+++.- -+.+ .+..-.+.|++.|+....+.+- +..+.+|+++.|+
T Consensus 14 ~~~l~~~v~~l~~~g~-~P~Laii~vg-~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~----------~~~~~~el~~~I~ 81 (282)
T PRK14169 14 LADLKQTVAKLAQQDV-TPTLAVVLVG-SDPASEVYVRNKQRRAEDIGVRSLMFRLP----------EATTQADLLAKVA 81 (282)
T ss_pred HHHHHHHHHHHHhCCC-CCeEEEEEeC-CChhHHHHHHHHHHHHHHcCCEEEEEECC----------CCCCHHHHHHHHH
Confidence 3555666777776687 4566665553 2332 3667888899999887776651 2245566666666
Q ss_pred Hh
Q psy5052 107 EA 108 (172)
Q Consensus 107 ~~ 108 (172)
+.
T Consensus 82 ~l 83 (282)
T PRK14169 82 EL 83 (282)
T ss_pred HH
Confidence 54
No 323
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=40.37 E-value=1.7e+02 Score=23.68 Aligned_cols=37 Identities=8% Similarity=0.289 Sum_probs=24.4
Q ss_pred ChhcCCCeEE-EeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCC
Q psy5052 1 YKKAGLDSIN-ISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGY 45 (172)
Q Consensus 1 L~~aGl~~v~-iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~ 45 (172)
|+..|++.|- +.+|..++. ..++.++++++.+++.|.
T Consensus 106 L~rL~td~iDl~~lH~~~~~--------~~~~e~~~aL~~l~~~G~ 143 (317)
T TIGR01293 106 LERLQLEYVDIVFANRPDPN--------TPMEETVRAMTYVINQGM 143 (317)
T ss_pred HHHhCCCcEeEEEeccCCCC--------CCHHHHHHHHHHHHHcCC
Confidence 4556777665 667766532 146777888888888774
No 324
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=40.25 E-value=1.2e+02 Score=24.05 Aligned_cols=69 Identities=14% Similarity=0.184 Sum_probs=43.9
Q ss_pred cCCCeEEEeeeCCCHhhhccccCC-------CCHHHHHHHHHHHHHcCCCcEEEEEEEecCC--CHHHHHHHHHHHhcCC
Q psy5052 4 AGLDSINISLDTLKPDKYEFITRR-------KGWSRVLAGIDLAVQLGYDNLKVNVVVMKNF--NDDEILDFVLLTRDRP 74 (172)
Q Consensus 4 aGl~~v~iSlds~~~e~~~~i~g~-------~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~--N~~ei~~l~~~a~~~g 74 (172)
..|.-+.|+--+.+...+..++-. -+|+-+.++.+.+++.|+ ++++-.|..... |. | .++.+.++++|
T Consensus 99 v~l~DvVia~~A~tds~~~~~~f~~~df~~~ad~~Ll~~a~~~A~e~gi-~~hvgnv~ssD~FY~~-~-~~~~~~~~~~g 175 (236)
T COG0813 99 VKLRDVVIAQGASTDSNVNRIRFKPHDFAPIADFELLEKAYETAKELGI-DTHVGNVFSSDLFYNP-D-TEMFDLMAKYG 175 (236)
T ss_pred cccceEEEeccccCcchhhhcccCcccccccCCHHHHHHHHHHHHHhCC-ceeeeeeeeeecccCC-C-HHHHHHHHHhC
Confidence 445566777777776666655421 258999999999999999 799855554332 22 2 34445555555
Q ss_pred C
Q psy5052 75 I 75 (172)
Q Consensus 75 ~ 75 (172)
+
T Consensus 176 v 176 (236)
T COG0813 176 V 176 (236)
T ss_pred C
Confidence 4
No 325
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=40.21 E-value=1.2e+02 Score=23.91 Aligned_cols=52 Identities=23% Similarity=0.367 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEecCC--CHHHHHHHHHHHh-----------cCCCeEEEE
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVVVMKNF--NDDEILDFVLLTR-----------DRPIDVRFI 80 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v~~~g~--N~~ei~~l~~~a~-----------~~g~~~~~i 80 (172)
.++.+.+.++.+.+.|++.+++-.-=+.+. ..+|+..|+++.. +.|+.++++
T Consensus 35 G~~~~~~i~~~c~~~GI~~lT~YaFS~EN~~Rp~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~i 99 (230)
T PRK14837 35 GLKRAKEIVKHSLKLGIKYLSLYVFSTENWNRTDSEIEHLMFLIADYLSSEFNFYKKNNIKIIVS 99 (230)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEE
Confidence 588999999999999996455443222222 2357777666553 457777765
No 326
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.10 E-value=2.1e+02 Score=23.41 Aligned_cols=67 Identities=7% Similarity=0.101 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEecCCCHH---HHHHHHHHHhcCCCeEEEEeeeeCCCCCCCCCCCCCHHHHHHHHH
Q psy5052 30 WSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDD---EILDFVLLTRDRPIDVRFIEYMPFSGNQWNNTKIMPFSEMLTKIK 106 (172)
Q Consensus 30 ~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~---ei~~l~~~a~~~g~~~~~i~~~p~g~~~~~~~~~~~~~e~~~~l~ 106 (172)
.+++.+-++.+++.|+ ..++-+++.- .+.+ .+..-.+.|++.|+....+++- +..+.+++++.|+
T Consensus 16 ~~~~~~~v~~l~~~g~-~p~Laii~vg-~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~----------~~~~~~~l~~~I~ 83 (286)
T PRK14175 16 RQGLQDQVEALKEKGF-TPKLSVILVG-NDGASQSYVRSKKKAAEKIGMISEIVHLE----------ETATEEEVLNELN 83 (286)
T ss_pred HHHHHHHHHHHHhcCC-CCeEEEEEeC-CCHHHHHHHHHHHHHHHHcCCEEEEEECC----------CCCCHHHHHHHHH
Confidence 4566667777777787 5576665553 3332 3667888999999987777661 2245667777776
Q ss_pred Hh
Q psy5052 107 EA 108 (172)
Q Consensus 107 ~~ 108 (172)
+.
T Consensus 84 ~l 85 (286)
T PRK14175 84 RL 85 (286)
T ss_pred HH
Confidence 54
No 327
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=40.08 E-value=42 Score=22.59 Aligned_cols=15 Identities=20% Similarity=0.663 Sum_probs=7.4
Q ss_pred CCCeEEEeeeCCCHh
Q psy5052 5 GLDSINISLDTLKPD 19 (172)
Q Consensus 5 Gl~~v~iSlds~~~e 19 (172)
|++.|||++.-+|.|
T Consensus 33 gVegVNItv~eiD~e 47 (97)
T COG1888 33 GVEGVNITVTEIDVE 47 (97)
T ss_pred CcceEEEEEEEeeeh
Confidence 445555555544444
No 328
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=39.81 E-value=1.2e+02 Score=24.34 Aligned_cols=52 Identities=25% Similarity=0.409 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEecCCC--HHHHHHHHHHHh-----------cCCCeEEEE
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVVVMKNFN--DDEILDFVLLTR-----------DRPIDVRFI 80 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N--~~ei~~l~~~a~-----------~~g~~~~~i 80 (172)
.++.+.+.++.+.+.|++.+++-.-=+.+++ .+|+..+++++. +.|+.++++
T Consensus 51 G~~~l~~v~~~c~~~GIk~lTvYaFS~EN~~R~~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~i 115 (250)
T PRK14840 51 GAKSLPQIVDTALHLGIEVLTLFAFSTENFSRSKEEVAELFSLFNSQLDSQLPYLHENEIRLRCI 115 (250)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 5889999999999999965554432232222 346666655443 568888876
No 329
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=39.80 E-value=1.3e+02 Score=21.06 Aligned_cols=42 Identities=10% Similarity=0.030 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEE-EEecCCCHHHHHHHHHHHh
Q psy5052 30 WSRVLAGIDLAVQLGYDNLKVNV-VVMKNFNDDEILDFVLLTR 71 (172)
Q Consensus 30 ~~~vl~~i~~~~~~g~~~v~in~-v~~~g~N~~ei~~l~~~a~ 71 (172)
...+-++++.+.+.|.++|-|.- .+++|.-.++|.+.++-.+
T Consensus 55 ~p~~~eaL~~l~~~G~~~V~V~Pl~l~~G~e~~di~~~v~~~~ 97 (127)
T cd03412 55 VDTPEEALAKLAADGYTEVIVQSLHIIPGEEYEKLKREVDAFK 97 (127)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEeCeeECcHHHHHHHHHHHHHh
Confidence 56667888888888887666664 5567766666766665443
No 330
>PLN02540 methylenetetrahydrofolate reductase
Probab=39.63 E-value=2.9e+02 Score=24.97 Aligned_cols=80 Identities=6% Similarity=0.034 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHHHc-CCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCe-EEEEe-eeeCCCCCCCC--CCCCCHHHHHH
Q psy5052 29 GWSRVLAGIDLAVQL-GYDNLKVNVVVMKNFNDDEILDFVLLTRDRPID-VRFIE-YMPFSGNQWNN--TKIMPFSEMLT 103 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~-g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~-~~~i~-~~p~g~~~~~~--~~~~~~~e~~~ 103 (172)
..+..++....+++. |+ ++-..++... .|..+|.+.++-+..+|+. +-.+. =-|.+...|.. ..+-...++++
T Consensus 42 t~~~Tl~la~~lq~~~Gi-e~i~HLTCrd-~n~~~L~~~L~~a~~~GIrNILALrGDpp~~~d~~~~~~g~F~~A~dLV~ 119 (565)
T PLN02540 42 TADLTLDIANRMQNMICV-ETMMHLTCTN-MPVEKIDHALETIKSNGIQNILALRGDPPHGQDKFVQVEGGFACALDLVK 119 (565)
T ss_pred cHHHHHHHHHHHHHhcCC-CeeEEeeecC-CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCcCCCCCCcccHHHHHH
Confidence 578888888888865 99 6777777654 8999999999999999985 21111 01221111211 12234668889
Q ss_pred HHHHhCC
Q psy5052 104 KIKEAHP 110 (172)
Q Consensus 104 ~l~~~~~ 110 (172)
.+++.++
T Consensus 120 ~Ir~~~g 126 (565)
T PLN02540 120 HIRSKYG 126 (565)
T ss_pred HHHHhCC
Confidence 9988764
No 331
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=39.47 E-value=1.4e+02 Score=21.18 Aligned_cols=70 Identities=16% Similarity=0.239 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEecC----------CCHHHHHHHHHHHhcCCCeEEEEee-eeCCCC--CCCCCCCC
Q psy5052 30 WSRVLAGIDLAVQLGYDNLKVNVVVMKN----------FNDDEILDFVLLTRDRPIDVRFIEY-MPFSGN--QWNNTKIM 96 (172)
Q Consensus 30 ~~~vl~~i~~~~~~g~~~v~in~v~~~g----------~N~~ei~~l~~~a~~~g~~~~~i~~-~p~g~~--~~~~~~~~ 96 (172)
...+++.++.+++.|. .+.+.|- |. +|.+.++.+.+|..+.++...-+.+ -|.++. -+..+..+
T Consensus 26 ~~~~ie~L~~l~~~G~-~IiiaTG--R~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipYd~l~~~kp~~~~~~~~~dD~~i 102 (126)
T TIGR01689 26 ILAVIEKLRHYKALGF-EIVISSS--RNMRTYEGNVGKINIHTLPIIILWLNQHNVPYDEIYVGKPWCGHDGFYVDDRAI 102 (126)
T ss_pred CHHHHHHHHHHHHCCC-EEEEECC--CCchhhhccccccchhhHHHHHHHHHHcCCCCceEEeCCCcCCCCCceecchhh
Confidence 4688889999989997 5554431 11 2344567899999999987644433 254432 22334445
Q ss_pred CHHHHH
Q psy5052 97 PFSEML 102 (172)
Q Consensus 97 ~~~e~~ 102 (172)
..++|.
T Consensus 103 r~~~~~ 108 (126)
T TIGR01689 103 RPSEFS 108 (126)
T ss_pred CHHHHH
Confidence 555543
No 332
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=39.45 E-value=1.2e+02 Score=24.73 Aligned_cols=44 Identities=18% Similarity=0.238 Sum_probs=30.3
Q ss_pred HHHHHHHHHHH-HcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCC
Q psy5052 31 SRVLAGIDLAV-QLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPI 75 (172)
Q Consensus 31 ~~vl~~i~~~~-~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~ 75 (172)
+.++++++.+. +.|+ ++.+-.++++.....++.+.++++.+.+.
T Consensus 110 ~~~~~~i~~a~~~~gi-~~~li~~~~r~~~~~~~~~~~~~~~~~~~ 154 (324)
T TIGR01430 110 EAVLDGLDEAERDFGI-KSRLILCGMRHKQPEAAEETLELAKPYKE 154 (324)
T ss_pred HHHHHHHHHHHHhcCC-eEEEEEEEeCCCCHHHHHHHHHHHHhhcc
Confidence 33445776664 5688 78888888874455678888888877654
No 333
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=39.44 E-value=36 Score=17.79 Aligned_cols=22 Identities=27% Similarity=0.723 Sum_probs=13.7
Q ss_pred CCcccCCC-ceeeccCCcEEecC
Q psy5052 143 EHFCGTCN-RLRLMADGSLKVCL 164 (172)
Q Consensus 143 ~~~C~~c~-~~~i~~~G~v~pC~ 164 (172)
+.||+.|. .....+.|..+-|.
T Consensus 3 ~rfC~~CG~~t~~~~~g~~r~C~ 25 (32)
T PF09297_consen 3 HRFCGRCGAPTKPAPGGWARRCP 25 (32)
T ss_dssp TSB-TTT--BEEE-SSSS-EEES
T ss_pred CcccCcCCccccCCCCcCEeECC
Confidence 45888886 57788888888884
No 334
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=39.27 E-value=98 Score=27.60 Aligned_cols=53 Identities=17% Similarity=0.275 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCcEEEEEEEec-----CC-------------CHHHHHHHHHHHhcCCCeEEE
Q psy5052 27 RKGWSRVLAGIDLAVQLGYDNLKVNVVVMK-----NF-------------NDDEILDFVLLTRDRPIDVRF 79 (172)
Q Consensus 27 ~~~~~~vl~~i~~~~~~g~~~v~in~v~~~-----g~-------------N~~ei~~l~~~a~~~g~~~~~ 79 (172)
.|.|+.+++.+..+++.|++.|-++-+.-. |. +.+++.+|++-|.++|+.|-+
T Consensus 29 ~Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vil 99 (551)
T PRK10933 29 TGDLRGVTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIIL 99 (551)
T ss_pred CcCHHHHHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEE
Confidence 468999999999999999965555433211 11 224788999999999988654
No 335
>PLN02361 alpha-amylase
Probab=39.21 E-value=68 Score=27.46 Aligned_cols=54 Identities=13% Similarity=0.115 Sum_probs=36.6
Q ss_pred ChhcCCCeEEEee--eCCCH-----hhhcccc-CCCCHHHHHHHHHHHHHcCCCcEEEEEEEe
Q psy5052 1 YKKAGLDSINISL--DTLKP-----DKYEFIT-RRKGWSRVLAGIDLAVQLGYDNLKVNVVVM 55 (172)
Q Consensus 1 L~~aGl~~v~iSl--ds~~~-----e~~~~i~-g~~~~~~vl~~i~~~~~~g~~~v~in~v~~ 55 (172)
|+++|++.|-|+= ++..+ .-+-.+. .-|+-++..+.|++|++.|+ +|-+-+|+.
T Consensus 38 l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi-~vi~D~V~N 99 (401)
T PLN02361 38 LAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNV-RAMADIVIN 99 (401)
T ss_pred HHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCC-EEEEEEccc
Confidence 5788999887653 22222 1122222 23678899999999999999 788877764
No 336
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=39.07 E-value=1.9e+02 Score=22.73 Aligned_cols=70 Identities=19% Similarity=0.227 Sum_probs=40.5
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEecCCC----H--------HHHHHHHHHHhcCCCeEEEEeeeeCCCCCCCCCCCC
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVVVMKNFN----D--------DEILDFVLLTRDRPIDVRFIEYMPFSGNQWNNTKIM 96 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N----~--------~ei~~l~~~a~~~g~~~~~i~~~p~g~~~~~~~~~~ 96 (172)
.++.+.+.|+.+++.|. +. + ++..|.. . +.+..++++|++.|+.+.+ |.++.... ...-
T Consensus 83 ~~~~~~~~i~~A~~lG~-~~-v--~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi~l~l-En~~~~~~----~~~~ 153 (279)
T cd00019 83 SIERLKDEIERCEELGI-RL-L--VFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGVVIAL-ETMAGQGN----EIGS 153 (279)
T ss_pred HHHHHHHHHHHHHHcCC-CE-E--EECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEE-eCCCCCCC----CCCC
Confidence 58888999999999998 42 2 2233322 1 1255677777788886544 44332211 1123
Q ss_pred CHHHHHHHHHH
Q psy5052 97 PFSEMLTKIKE 107 (172)
Q Consensus 97 ~~~e~~~~l~~ 107 (172)
+..++.+.+++
T Consensus 154 t~~~~~~li~~ 164 (279)
T cd00019 154 SFEELKEIIDL 164 (279)
T ss_pred CHHHHHHHHHh
Confidence 55666666654
No 337
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=38.78 E-value=1.2e+02 Score=24.49 Aligned_cols=45 Identities=16% Similarity=0.226 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHH-HcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCC
Q psy5052 30 WSRVLAGIDLAV-QLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPI 75 (172)
Q Consensus 30 ~~~vl~~i~~~~-~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~ 75 (172)
.+.++++++.+. +.|+ ++.+...+.+.....++.+.++++.+++.
T Consensus 110 ~~~~~~ai~~~~~~~gi-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (325)
T cd01320 110 VEAVLRGLDEAEAEFGI-KARLILCGLRHLSPESAQETLELALKYRD 155 (325)
T ss_pred HHHHHHHHHHHHHhcCC-eEEEEEEecCCCCHHHHHHHHHHHHhccC
Confidence 444566777664 4587 77777777774455567788888776543
No 338
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.68 E-value=2.2e+02 Score=23.38 Aligned_cols=66 Identities=15% Similarity=0.069 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEEEecCCCHH---HHHHHHHHHhcCCCeEEEEeeeeCCCCCCCCCCCCCHHHHHHHHHH
Q psy5052 31 SRVLAGIDLAVQLGYDNLKVNVVVMKNFNDD---EILDFVLLTRDRPIDVRFIEYMPFSGNQWNNTKIMPFSEMLTKIKE 107 (172)
Q Consensus 31 ~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~---ei~~l~~~a~~~g~~~~~i~~~p~g~~~~~~~~~~~~~e~~~~l~~ 107 (172)
+++.+-++.+++.|+ ..++-+++.- -+.+ .+....+.|++.|+....+++- +..+.+|+++.|++
T Consensus 16 ~~l~~~v~~l~~~g~-~P~LaiI~vg-~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~----------~~~~~~el~~~I~~ 83 (297)
T PRK14167 16 DDLTDAIETLEDAGV-TPGLATVLMS-DDPASETYVSMKQRDCEEVGIEAIDVEID----------PDAPAEELYDTIDE 83 (297)
T ss_pred HHHHHHHHHHHhCCC-CceEEEEEeC-CCHHHHHHHHHHHHHHHHcCCEEEEEECC----------CCCCHHHHHHHHHH
Confidence 455556667777787 5576666553 3332 3667888899999988777661 23455666666665
Q ss_pred h
Q psy5052 108 A 108 (172)
Q Consensus 108 ~ 108 (172)
.
T Consensus 84 l 84 (297)
T PRK14167 84 L 84 (297)
T ss_pred H
Confidence 4
No 339
>PLN02591 tryptophan synthase
Probab=38.66 E-value=1.4e+02 Score=23.84 Aligned_cols=76 Identities=12% Similarity=0.202 Sum_probs=48.9
Q ss_pred ChhcCCCeEEEeeeCCCHh---------hhccccCCCCHHHHHHHHHHHHHc-CCCcEEEEEEEecCCCH--H-HHHHHH
Q psy5052 1 YKKAGLDSINISLDTLKPD---------KYEFITRRKGWSRVLAGIDLAVQL-GYDNLKVNVVVMKNFND--D-EILDFV 67 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e---------~~~~i~g~~~~~~vl~~i~~~~~~-g~~~v~in~v~~~g~N~--~-ei~~l~ 67 (172)
|.++|.|.+-|-+-..||- .++.+..+-+++++++.++.+++. .+ ++ ++|--.|. + -+++++
T Consensus 25 l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~-p~----ilm~Y~N~i~~~G~~~F~ 99 (250)
T PLN02591 25 LDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSC-PI----VLFTYYNPILKRGIDKFM 99 (250)
T ss_pred HHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCC-CE----EEEecccHHHHhHHHHHH
Confidence 3468888888888777762 233344444788999999888743 33 33 23332453 2 577888
Q ss_pred HHHhcCCCeEEEEe
Q psy5052 68 LLTRDRPIDVRFIE 81 (172)
Q Consensus 68 ~~a~~~g~~~~~i~ 81 (172)
+.+++.|++--++.
T Consensus 100 ~~~~~aGv~Gviip 113 (250)
T PLN02591 100 ATIKEAGVHGLVVP 113 (250)
T ss_pred HHHHHcCCCEEEeC
Confidence 88888888655543
No 340
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=38.42 E-value=52 Score=26.38 Aligned_cols=69 Identities=19% Similarity=0.270 Sum_probs=44.0
Q ss_pred hhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEe---c----CCCHH-------H-HHHH
Q psy5052 2 KKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVM---K----NFNDD-------E-ILDF 66 (172)
Q Consensus 2 ~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~---~----g~N~~-------e-i~~l 66 (172)
|++|.|.|-+|+|-.|+. -.++- .+=++.++-...+.+.|+ ++ ++..+ | |..+. + +.+.
T Consensus 28 K~~GFDFvEmSvDEsDeR-LaRLD--Ws~~er~~l~~ai~etgv-~i--pSmClSaHRRfPfGS~D~~~r~~aleiM~Ka 101 (287)
T COG3623 28 KELGFDFVEMSVDESDER-LARLD--WSKEERLALVNAIQETGV-RI--PSMCLSAHRRFPFGSKDEATRQQALEIMEKA 101 (287)
T ss_pred HHcCCCeEEEeccchHHH-HHhcC--CCHHHHHHHHHHHHHhCC-Cc--cchhhhhhccCCCCCCCHHHHHHHHHHHHHH
Confidence 689999999999966643 23221 245666777777788887 33 32222 2 22222 1 5568
Q ss_pred HHHHhcCCCe
Q psy5052 67 VLLTRDRPID 76 (172)
Q Consensus 67 ~~~a~~~g~~ 76 (172)
+.+|.++|+.
T Consensus 102 I~LA~dLGIR 111 (287)
T COG3623 102 IQLAQDLGIR 111 (287)
T ss_pred HHHHHHhCce
Confidence 8899999975
No 341
>PLN02591 tryptophan synthase
Probab=38.42 E-value=2e+02 Score=22.87 Aligned_cols=16 Identities=19% Similarity=-0.070 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHcCC
Q psy5052 30 WSRVLAGIDLAVQLGY 45 (172)
Q Consensus 30 ~~~vl~~i~~~~~~g~ 45 (172)
+++.-+-.+.+++.|+
T Consensus 117 ~ee~~~~~~~~~~~gl 132 (250)
T PLN02591 117 LEETEALRAEAAKNGI 132 (250)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 5555555566666665
No 342
>PF08903 DUF1846: Domain of unknown function (DUF1846); InterPro: IPR014999 This group of proteins are functionally uncharacterised. ; PDB: 3BH1_B.
Probab=38.34 E-value=1.7e+02 Score=25.58 Aligned_cols=71 Identities=17% Similarity=0.044 Sum_probs=46.1
Q ss_pred eEEEeeeCCCHhhhccccCC-C-CH-HHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEEEEe
Q psy5052 8 SINISLDTLKPDKYEFITRR-K-GW-SRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRFIE 81 (172)
Q Consensus 8 ~v~iSlds~~~e~~~~i~g~-~-~~-~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~~i~ 81 (172)
.|-|.+.+-|=| ..++|+- | ++ ..|++-|+.+++.|+ .|. ++|+++=.+......+.+-...+|+.+....
T Consensus 66 EIvI~I~A~DIe-~nKvR~DlGItYd~dVLRLid~fr~~gl-~V~-sVVIT~y~~q~~a~~F~~kLe~~gIkvy~Hy 139 (491)
T PF08903_consen 66 EIVICINAGDIE-RNKVRGDLGITYDQDVLRLIDDFRSRGL-YVG-SVVITQYEGQPAADAFKNKLERLGIKVYRHY 139 (491)
T ss_dssp EEEEEEECHHHH-TT-BETTTSSBHHHHHHHHHHHHHHTT--EEE-EEEEECE-T-HHHHHHHHHHHTTT-EEEEEE
T ss_pred eEEEEEEhhhHh-hccccccCCCCHhHHHHHHHHHHHhcCc-eee-eEEEEecCCCHHHHHHHHHHHHCCCcEEEec
Confidence 466777776655 4678863 2 44 579999999999998 443 4555662233456778888899999986653
No 343
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.33 E-value=2.2e+02 Score=23.24 Aligned_cols=67 Identities=9% Similarity=-0.070 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEecCCCHH---HHHHHHHHHhcCCCeEEEEeeeeCCCCCCCCCCCCCHHHHHHHHH
Q psy5052 30 WSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDD---EILDFVLLTRDRPIDVRFIEYMPFSGNQWNNTKIMPFSEMLTKIK 106 (172)
Q Consensus 30 ~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~---ei~~l~~~a~~~g~~~~~i~~~p~g~~~~~~~~~~~~~e~~~~l~ 106 (172)
.+++.+-++.+++.|+ +-++-+++.- -+.+ .+..-.+.|++.|+....+.+- +..+.+|+++.|.
T Consensus 16 ~~~l~~~v~~l~~~g~-~P~LaiI~vg-~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~----------~~~t~~el~~~I~ 83 (284)
T PRK14193 16 KADLAERVAALKEKGI-TPGLGTVLVG-DDPGSQAYVRGKHRDCAEVGITSIRRDLP----------ADATQEELNAVID 83 (284)
T ss_pred HHHHHHHHHHHHhCCC-CceEEEEEeC-CCHHHHHHHHHHHHHHHHcCCEEEEEECC----------CCCCHHHHHHHHH
Confidence 4555566677777787 4566665543 3332 3667888999999987777661 2345666767666
Q ss_pred Hh
Q psy5052 107 EA 108 (172)
Q Consensus 107 ~~ 108 (172)
+.
T Consensus 84 ~l 85 (284)
T PRK14193 84 EL 85 (284)
T ss_pred HH
Confidence 54
No 344
>PRK08227 autoinducer 2 aldolase; Validated
Probab=38.21 E-value=1.9e+02 Score=23.30 Aligned_cols=44 Identities=7% Similarity=0.051 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEecCCCH---HH-HHHHHHHHhcCCCe
Q psy5052 30 WSRVLAGIDLAVQLGYDNLKVNVVVMKNFND---DE-ILDFVLLTRDRPID 76 (172)
Q Consensus 30 ~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~---~e-i~~l~~~a~~~g~~ 76 (172)
++.+-+..+.+.+.|+ ++-+ +.-+|.+. .+ |.-..+.+.++|++
T Consensus 126 l~~l~~v~~ea~~~G~-Plla--~~prG~~~~~~~~~ia~aaRiaaELGAD 173 (264)
T PRK08227 126 IKNIIQLVDAGLRYGM-PVMA--VTAVGKDMVRDARYFSLATRIAAEMGAQ 173 (264)
T ss_pred HHHHHHHHHHHHHhCC-cEEE--EecCCCCcCchHHHHHHHHHHHHHHcCC
Confidence 4444455555666666 5444 22344222 11 33344444556655
No 345
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=38.15 E-value=2.4e+02 Score=24.14 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=16.8
Q ss_pred hcCCCeEEEeeeCCCHhhhc
Q psy5052 3 KAGLDSINISLDTLKPDKYE 22 (172)
Q Consensus 3 ~aGl~~v~iSlds~~~e~~~ 22 (172)
+.|+|.|.|.+.|-+|+..+
T Consensus 151 ~~~aD~Ialr~~S~DP~~~d 170 (389)
T TIGR00381 151 EFGADMVTIHLISTDPKLDD 170 (389)
T ss_pred HhCCCEEEEEecCCCccccc
Confidence 57899999999999998444
No 346
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=38.09 E-value=79 Score=25.01 Aligned_cols=56 Identities=13% Similarity=0.106 Sum_probs=36.9
Q ss_pred CHhhhccccCCC------CHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEEEEeee
Q psy5052 17 KPDKYEFITRRK------GWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRFIEYM 83 (172)
Q Consensus 17 ~~e~~~~i~g~~------~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~~i~~~ 83 (172)
-||...++|-.+ ..+++.+.+++++++|+ +|++-.= -+. +=++.+++.|++ +||+-
T Consensus 91 VPe~r~evTTegGlD~~~~~~~l~~~v~~L~~~Gi-rVSLFiD----~d~----~qi~aa~~~gA~--~IELh 152 (243)
T COG0854 91 VPEKREEVTTEGGLDVAGQLDKLRDAVRRLKNAGI-RVSLFID----PDP----EQIEAAAEVGAP--RIELH 152 (243)
T ss_pred CCCchhhcccccchhhhhhhhhHHHHHHHHHhCCC-eEEEEeC----CCH----HHHHHHHHhCCC--EEEEe
Confidence 356667776322 36677889999999999 7876531 233 345677778887 66663
No 347
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=38.03 E-value=1.5e+02 Score=23.54 Aligned_cols=52 Identities=19% Similarity=0.245 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEecCCC--HHHHHHHHHHHh-----------cCCCeEEEE
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVVVMKNFN--DDEILDFVLLTR-----------DRPIDVRFI 80 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N--~~ei~~l~~~a~-----------~~g~~~~~i 80 (172)
.++.+.+.++.+.+.|++.|++=.-=+.+.+ .+|+..|++++. +.|+.++++
T Consensus 37 G~~~l~~i~~~c~~lgI~~vTvYaFS~eN~~R~~~EV~~Lm~L~~~~l~~~~~~~~~~~irv~~i 101 (241)
T PRK14842 37 GANAIDRLMDASLEYGLKNISLYAFSTENWKRPITEIRSIFGLLVEFIETRLDTIHARGIRIHHS 101 (241)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 5889999999999999965554432222222 346666655543 467777775
No 348
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=37.83 E-value=1.6e+02 Score=23.28 Aligned_cols=16 Identities=13% Similarity=0.106 Sum_probs=11.9
Q ss_pred HHHHHHHhcCCCeEEE
Q psy5052 64 LDFVLLTRDRPIDVRF 79 (172)
Q Consensus 64 ~~l~~~a~~~g~~~~~ 79 (172)
+++++++++.|+.+-.
T Consensus 110 ~~~~~l~~~~~~~vV~ 125 (258)
T cd00423 110 PEMAPLAAEYGAPVVL 125 (258)
T ss_pred hHHHHHHHHcCCCEEE
Confidence 5678888888886544
No 349
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.74 E-value=2.3e+02 Score=23.17 Aligned_cols=67 Identities=12% Similarity=-0.020 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEecCCCHH---HHHHHHHHHhcCCCeEEEEeeeeCCCCCCCCCCCCCHHHHHHHHH
Q psy5052 30 WSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDD---EILDFVLLTRDRPIDVRFIEYMPFSGNQWNNTKIMPFSEMLTKIK 106 (172)
Q Consensus 30 ~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~---ei~~l~~~a~~~g~~~~~i~~~p~g~~~~~~~~~~~~~e~~~~l~ 106 (172)
.+++.+-++.+++.|+ .-++-+++.- .+.+ .+..-.+.|++.|+....+.+ ++..+.+++++.|+
T Consensus 14 ~~~ik~~v~~l~~~g~-~P~LaiI~vg-~d~as~~Yv~~k~k~a~~~Gi~~~~~~l----------~~~~t~~~l~~~I~ 81 (282)
T PRK14182 14 KGEVATEVRALAARGV-QTGLTVVRVG-DDPASAIYVRGKRKDCEEVGITSVEHHL----------PATTTQAELLALIA 81 (282)
T ss_pred HHHHHHHHHHHHhCCC-CCeEEEEEeC-CCHHHHHHHHHHHHHHHHcCCEEEEEEC----------CCCCCHHHHHHHHH
Confidence 4566677777777787 4566665543 3332 366788889999998877765 12345667777776
Q ss_pred Hh
Q psy5052 107 EA 108 (172)
Q Consensus 107 ~~ 108 (172)
+.
T Consensus 82 ~l 83 (282)
T PRK14182 82 RL 83 (282)
T ss_pred HH
Confidence 54
No 350
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=37.64 E-value=1.3e+02 Score=23.51 Aligned_cols=52 Identities=17% Similarity=0.314 Sum_probs=33.2
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEecCCC--HHHHHHHHHHHh-----------cCCCeEEEE
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVVVMKNFN--DDEILDFVLLTR-----------DRPIDVRFI 80 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N--~~ei~~l~~~a~-----------~~g~~~~~i 80 (172)
+.+.+.+.++.+.+.|++.+++=.-=+.+.+ .+|+..++++.. +.|+.++++
T Consensus 29 G~~~~~~i~~~~~~~gI~~lTvyaFS~eN~~R~~~EV~~Lm~l~~~~l~~~~~~~~~~~i~vr~i 93 (221)
T cd00475 29 GAEKLRDILRWCLELGVKEVTLYAFSTENWKRPKEEVDFLMELFRDVLRRILKELEKLGVRIRII 93 (221)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEeechhhhCcCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEE
Confidence 5888899999999999954544322222222 347766666554 457777776
No 351
>PRK05788 cobalamin biosynthesis protein CbiG; Validated
Probab=37.21 E-value=66 Score=26.58 Aligned_cols=51 Identities=14% Similarity=0.206 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHHH-HcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEEEE
Q psy5052 29 GWSRVLAGIDLAV-QLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRFI 80 (172)
Q Consensus 29 ~~~~vl~~i~~~~-~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~~i 80 (172)
+.+.+.++|+.+. +.|+.+-.|..+..-..-.+| +.++++++++|+.++|+
T Consensus 206 ~~e~i~~ai~~~L~~~~i~~~~i~~iatid~K~~E-~gL~~~a~~lg~pl~~~ 257 (315)
T PRK05788 206 SAEEIAEAVERALEALNIDPRAVKAIASITLKKDE-PGLLQLAEELGVPFITF 257 (315)
T ss_pred CHHHHHHHHHHHHHHcCCCHHHccEEeeeeccCCC-HHHHHHHHHhCCCeEEe
Confidence 6999999999997 567644344433332112223 47899999999998887
No 352
>TIGR02804 ExbD_2 TonB system transport protein ExbD, group 2. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=37.19 E-value=57 Score=22.63 Aligned_cols=23 Identities=9% Similarity=0.144 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEE
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVN 51 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in 51 (172)
.|+++++.++.++++|+.++.+.
T Consensus 96 ~~~~vv~v~d~~~~~G~~~v~l~ 118 (121)
T TIGR02804 96 KFQDFVTITDMLKAKEHENVQIV 118 (121)
T ss_pred CHhHHHHHHHHHHHcCCCeEEEE
Confidence 68899999999999988656553
No 353
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=37.12 E-value=2e+02 Score=22.47 Aligned_cols=14 Identities=36% Similarity=0.686 Sum_probs=9.4
Q ss_pred hhcCCCeEEEeeeC
Q psy5052 2 KKAGLDSINISLDT 15 (172)
Q Consensus 2 ~~aGl~~v~iSlds 15 (172)
+++|++.|.++++.
T Consensus 26 ~~~G~~~iEl~~~~ 39 (284)
T PRK13210 26 KELGFDFVEMSVDE 39 (284)
T ss_pred HHcCCCeEEEecCC
Confidence 46777777777654
No 354
>PLN02826 dihydroorotate dehydrogenase
Probab=37.00 E-value=1.3e+02 Score=25.81 Aligned_cols=50 Identities=16% Similarity=0.147 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHHH-------cCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCe-EEEE
Q psy5052 28 KGWSRVLAGIDLAVQ-------LGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPID-VRFI 80 (172)
Q Consensus 28 ~~~~~vl~~i~~~~~-------~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~-~~~i 80 (172)
..+..++++++..++ ... ++-+- +-+..+.+++.++++.+.+.|++ +-.+
T Consensus 239 ~~l~~ll~~V~~~~~~~~~~~~~~~-Pv~vK--laPdl~~~di~~ia~~a~~~G~dGIi~~ 296 (409)
T PLN02826 239 KQLKDLLKKVLAARDEMQWGEEGPP-PLLVK--IAPDLSKEDLEDIAAVALALGIDGLIIS 296 (409)
T ss_pred HHHHHHHHHHHHHHHHhhhccccCC-ceEEe--cCCCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 357777777766643 122 33333 33445667899999999999986 3333
No 355
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=37.00 E-value=1.4e+02 Score=22.52 Aligned_cols=64 Identities=14% Similarity=0.124 Sum_probs=40.0
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCe
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPID 76 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~ 76 (172)
|++.|+..+-+-||- +-=....+..=+++.+=+..++++|+ .+.|. . |-.| ..+..++..+|+.
T Consensus 23 L~~~Gikgvi~DlDN----TLv~wd~~~~tpe~~~W~~e~k~~gi-~v~vv----S--Nn~e-~RV~~~~~~l~v~ 86 (175)
T COG2179 23 LKAHGIKGVILDLDN----TLVPWDNPDATPELRAWLAELKEAGI-KVVVV----S--NNKE-SRVARAAEKLGVP 86 (175)
T ss_pred HHHcCCcEEEEeccC----ceecccCCCCCHHHHHHHHHHHhcCC-EEEEE----e--CCCH-HHHHhhhhhcCCc
Confidence 567888888888772 22222344456788888889999998 44432 2 3222 2455667777765
No 356
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=36.98 E-value=2.2e+02 Score=22.80 Aligned_cols=43 Identities=7% Similarity=0.091 Sum_probs=19.9
Q ss_pred HHHHHHhcCCCeEEEEeeeeCCCCCC-CCCCCCCHHHHHHHHHH
Q psy5052 65 DFVLLTRDRPIDVRFIEYMPFSGNQW-NNTKIMPFSEMLTKIKE 107 (172)
Q Consensus 65 ~l~~~a~~~g~~~~~i~~~p~g~~~~-~~~~~~~~~e~~~~l~~ 107 (172)
.+..-|..+|++--++|.-|.....| .....++.+++.+.+++
T Consensus 203 ~~a~AAvA~GAdGl~IE~H~~P~~A~sD~~q~l~~~~l~~l~~~ 246 (250)
T PRK13397 203 PAAKIAKAVGANGIMMEVHPDPDHALSDAAQQIDYKQLEQLGQE 246 (250)
T ss_pred HHHHHHHHhCCCEEEEEecCCcccccCchhhhCCHHHHHHHHHH
Confidence 33344444555444555544443222 12345666666555554
No 357
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=36.79 E-value=2.3e+02 Score=23.59 Aligned_cols=67 Identities=15% Similarity=0.206 Sum_probs=38.8
Q ss_pred hcCCCeEEEeeeCCCHhh-hccccCCCCHHHHHHHHH----HHHH-c--CCCcEEEEEEEecCCCHHHHHHHHHHHhcC
Q psy5052 3 KAGLDSINISLDTLKPDK-YEFITRRKGWSRVLAGID----LAVQ-L--GYDNLKVNVVVMKNFNDDEILDFVLLTRDR 73 (172)
Q Consensus 3 ~aGl~~v~iSlds~~~e~-~~~i~g~~~~~~vl~~i~----~~~~-~--g~~~v~in~v~~~g~N~~ei~~l~~~a~~~ 73 (172)
+-|+..+-+.+. |.. |..-.+.-+++.+++++. .+.+ . |+ .+.+-+.++|....++..+.+++|...
T Consensus 81 ~dgV~Y~Eir~~---P~~~~~~~~~g~~~~~v~~av~~~~~~~~~~~~~~i-~v~lI~~~~R~~~~e~~~e~~~~a~~~ 155 (345)
T cd01321 81 EDNVQYVELRSS---FSPLYDLDGREYDYEETVQLLEEVVEKFKKTHPDFI-GLKIIYATLRNFNDSEIKESMEQCLNL 155 (345)
T ss_pred HcCCEEEEEeec---chHHHHccCCCCCHHHHHHHHHHHHHHHHHhCCCCc-eEEEEEEecCCCCHHHHHHHHHHHHHH
Confidence 446655556553 322 332112236777766664 3332 2 55 566777778877777788888888763
No 358
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=36.74 E-value=1.5e+02 Score=23.41 Aligned_cols=52 Identities=21% Similarity=0.335 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEecCCC--HHHHHHHHHHHh-----------cCCCeEEEE
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVVVMKNFN--DDEILDFVLLTR-----------DRPIDVRFI 80 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N--~~ei~~l~~~a~-----------~~g~~~~~i 80 (172)
.++.+.+-++.+.+.|++.|++=.-=+.+.+ .+|+..|+++.. +.|+.++++
T Consensus 22 G~~~l~~i~~~c~~~GI~~lT~yaFS~eN~~R~~~Ev~~Lm~l~~~~l~~~~~~~~~~~i~vr~i 86 (229)
T PRK10240 22 GAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRHNVRLRII 86 (229)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEeeehhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEE
Confidence 4788888888888888854444322222222 246666555543 456777776
No 359
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=36.47 E-value=1.4e+02 Score=23.84 Aligned_cols=52 Identities=19% Similarity=0.284 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEecCC--CHHHHHHHHHHHh-----------cCCCeEEEE
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVVVMKNF--NDDEILDFVLLTR-----------DRPIDVRFI 80 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v~~~g~--N~~ei~~l~~~a~-----------~~g~~~~~i 80 (172)
+++.+.+.++.+.+.|++.|++=.-=+.+. ..+|+..|+++.. +.|+.++++
T Consensus 38 G~~~l~~i~~~c~~~GI~~lTvYaFS~EN~~R~~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~i 102 (239)
T PRK14839 38 GVEAIRRVVEAAPDLGIGTLTLYAFSSDNWRRPAAEVGGLMRLLRAYLRNETERLARNGVRLTVI 102 (239)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEEechhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 488999999999999996455433222222 2357776665443 467877776
No 360
>KOG2524|consensus
Probab=36.40 E-value=45 Score=27.02 Aligned_cols=61 Identities=20% Similarity=0.230 Sum_probs=39.3
Q ss_pred CCeEEEeeeCCCHhhhccccCCC----CHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHH
Q psy5052 6 LDSINISLDTLKPDKYEFITRRK----GWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVL 68 (172)
Q Consensus 6 l~~v~iSlds~~~e~~~~i~g~~----~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~ 68 (172)
+|.+|+|+=|.+...+-.+..+| .+=.+-.+|.++.++|+ +|. +--.+....+.+|..+.+
T Consensus 67 vDtlNFsFWsp~~~~~y~v~~~gk~YTGYfalCAAinkAi~aGi-pv~-sp~fy~q~~~~~i~~iF~ 131 (338)
T KOG2524|consen 67 VDTLNFSFWSPKHSKRYSVEYKGKLYTGYFALCAAINKAIDAGI-PVT-SPAFYAQCPDTLIASIFD 131 (338)
T ss_pred EeeeeeeeecCCCCceeeeecCcceehhHHHHHHHHHHHHhcCC-CcC-CHHHHhhCCHHHHHHHHc
Confidence 57889999987766666665432 46677899999999999 553 333333233444554443
No 361
>TIGR02801 tolR TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score.
Probab=36.32 E-value=61 Score=22.62 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=15.9
Q ss_pred CHHHHHHHHHHHHHcCCCcEEE
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKV 50 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~i 50 (172)
.|+.+++.++.++++|+.++.+
T Consensus 105 ~~~~vv~vmd~~~~~G~~~v~l 126 (129)
T TIGR02801 105 PYGEVIKVMALLKQAGIEKVGL 126 (129)
T ss_pred CHHHHHHHHHHHHHcCCCeEEE
Confidence 5788888888888888754544
No 362
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=35.87 E-value=1.1e+02 Score=27.11 Aligned_cols=54 Identities=15% Similarity=0.228 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCC------------------CHHHHHHHHHHHhcCCCeEEE
Q psy5052 26 RRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNF------------------NDDEILDFVLLTRDRPIDVRF 79 (172)
Q Consensus 26 g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~------------------N~~ei~~l~~~a~~~g~~~~~ 79 (172)
+.|.|..+.+-+..+++.|++.|-++-+.-.+. +.+++.+|++-|.+.|+.|-+
T Consensus 22 ~~G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vil 93 (543)
T TIGR02403 22 GTGDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIML 93 (543)
T ss_pred CccCHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEE
Confidence 346899999999999999995454443222111 225789999999999988654
No 363
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=35.78 E-value=1.5e+02 Score=24.50 Aligned_cols=72 Identities=14% Similarity=0.132 Sum_probs=40.5
Q ss_pred hhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHc-CCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCe-EEE
Q psy5052 2 KKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQL-GYDNLKVNVVVMKNFNDDEILDFVLLTRDRPID-VRF 79 (172)
Q Consensus 2 ~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~-g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~-~~~ 79 (172)
.++|.+.+.|.+...... ...++...-+.+.+.++.++++ .+ +|.+... + +..++.++++.+.+.|++ +.+
T Consensus 124 ~~agad~ielN~scpp~~--~~~~g~~~~~~~~eil~~v~~~~~i-PV~vKl~--p--~~~~~~~~a~~l~~~G~dgI~~ 196 (334)
T PRK07565 124 EQAGADALELNIYYLPTD--PDISGAEVEQRYLDILRAVKSAVSI-PVAVKLS--P--YFSNLANMAKRLDAAGADGLVL 196 (334)
T ss_pred HHcCCCEEEEeCCCCCCC--CCCccccHHHHHHHHHHHHHhccCC-cEEEEeC--C--CchhHHHHHHHHHHcCCCeEEE
Confidence 457777776655332211 1122322223455666666543 56 6776643 2 445788888988899986 344
Q ss_pred E
Q psy5052 80 I 80 (172)
Q Consensus 80 i 80 (172)
+
T Consensus 197 ~ 197 (334)
T PRK07565 197 F 197 (334)
T ss_pred E
Confidence 3
No 364
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=35.75 E-value=26 Score=31.10 Aligned_cols=78 Identities=12% Similarity=0.116 Sum_probs=47.4
Q ss_pred ChhcCCCeEEEeeeCCCHhhhcccc-----CC-C----CHH---------HHHHHHHHHHHcCCCcEEEEEEE-------
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFIT-----RR-K----GWS---------RVLAGIDLAVQLGYDNLKVNVVV------- 54 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~-----g~-~----~~~---------~vl~~i~~~~~~g~~~v~in~v~------- 54 (172)
|.++|++.|-+.+-+++|.-+..++ +. + .|- ...++++.+.++|...|.+-...
T Consensus 32 L~~~GVd~IE~G~p~~s~~d~~~v~~i~~~~~~~~~i~~~~r~~r~~~~~~~d~~~ea~~~~~~~~v~i~~~~Sd~h~~~ 111 (526)
T TIGR00977 32 LDDLGIHYIEGGWPGANPKDVQFFWQLKEMNFKNAKIVAFCSTRRPHKKVEEDKMLQALIKAETPVVTIFGKSWDLHVLE 111 (526)
T ss_pred HHHcCCCEEEEeCCCCChHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchHHHHHHHhcCCCCEEEEEeCCCHHHHHH
Confidence 5689999999988888775544333 10 0 232 12356788888886334432211
Q ss_pred -ecCCCHHH----HHHHHHHHhcCCCeEEE
Q psy5052 55 -MKNFNDDE----ILDFVLLTRDRPIDVRF 79 (172)
Q Consensus 55 -~~g~N~~e----i~~l~~~a~~~g~~~~~ 79 (172)
++ .+.+| +.+.+++|++.|..+.|
T Consensus 112 ~l~-~s~ee~l~~~~~~v~~ak~~g~~V~~ 140 (526)
T TIGR00977 112 ALQ-TTLEENLAMIYDTVAYLKRQGDEVIY 140 (526)
T ss_pred HhC-CCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 12 23333 56679999999988764
No 365
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=35.71 E-value=2.3e+02 Score=22.63 Aligned_cols=69 Identities=13% Similarity=0.243 Sum_probs=45.1
Q ss_pred HHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEEEEeeeeCCC-----CCCCCCCCCCHHHHHHHHHHh
Q psy5052 34 LAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRFIEYMPFSG-----NQWNNTKIMPFSEMLTKIKEA 108 (172)
Q Consensus 34 l~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~~i~~~p~g~-----~~~~~~~~~~~~e~~~~l~~~ 108 (172)
.+.++++.++|..+|.+-|+..+ |-+- +.+++++.|-.+-+ -..+.. ..|.....++..++.+.++..
T Consensus 87 ~~~v~~ll~~G~~rViiGt~av~--~p~~---v~~~~~~~g~rivv--~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~ 159 (241)
T COG0106 87 LEDVEALLDAGVARVIIGTAAVK--NPDL---VKELCEEYGDRIVV--ALDARDGKVAVSGWQEDSGVELEELAKRLEEV 159 (241)
T ss_pred HHHHHHHHHCCCCEEEEecceec--CHHH---HHHHHHHcCCcEEE--EEEccCCccccccccccccCCHHHHHHHHHhc
Confidence 56677888899988888888875 4444 45566667732211 111211 358877778899998888875
Q ss_pred C
Q psy5052 109 H 109 (172)
Q Consensus 109 ~ 109 (172)
.
T Consensus 160 g 160 (241)
T COG0106 160 G 160 (241)
T ss_pred C
Confidence 3
No 366
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=35.55 E-value=1.1e+02 Score=27.67 Aligned_cols=74 Identities=9% Similarity=0.197 Sum_probs=43.0
Q ss_pred ChhcCCCeEEEeeeCCCHhh-----hccccCC--------C---CHHHHHHHHHHHHHcCCCcEEEEEEEecC-------
Q psy5052 1 YKKAGLDSINISLDTLKPDK-----YEFITRR--------K---GWSRVLAGIDLAVQLGYDNLKVNVVVMKN------- 57 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~-----~~~i~g~--------~---~~~~vl~~i~~~~~~g~~~v~in~v~~~g------- 57 (172)
|.+||-+-|.|++.+..+.. .++++.. + ....++++++. +..|.||-=-+.+
T Consensus 50 l~~aGceiVRvtv~~~~~a~~l~~I~~~l~~~G~~iPLVADIHF~~~~A~~a~~~-----v~kiRINPGN~~~~~k~f~~ 124 (611)
T PRK02048 50 IIDAGGEYVRLTTQGVREAENLMNINIGLRSQGYMVPLVADVHFNPKVADVAAQY-----AEKVRINPGNYVDPGRTFKK 124 (611)
T ss_pred HHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCCcHHHHHHHHh-----hCCEEECCCcCCCccccccc
Confidence 57899999999999887642 2222211 1 23444444444 2346666211110
Q ss_pred --CCH-----------HHHHHHHHHHhcCCCeEEE
Q psy5052 58 --FND-----------DEILDFVLLTRDRPIDVRF 79 (172)
Q Consensus 58 --~N~-----------~ei~~l~~~a~~~g~~~~~ 79 (172)
.++ +.+..+++.|+++|+.+|.
T Consensus 125 ~~Ytdeey~~el~~i~e~~~~~v~~ak~~~~~iRI 159 (611)
T PRK02048 125 LEYTDEEYAQEIQKIRDRFVPFLNICKENHTAIRI 159 (611)
T ss_pred cccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEE
Confidence 111 3466799999999998775
No 367
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=35.27 E-value=18 Score=24.55 Aligned_cols=36 Identities=17% Similarity=0.373 Sum_probs=16.6
Q ss_pred CCCeEEEeeeCCCHhhhcc-c--cCCC-CHHHHHHHHHHH
Q psy5052 5 GLDSINISLDTLKPDKYEF-I--TRRK-GWSRVLAGIDLA 40 (172)
Q Consensus 5 Gl~~v~iSlds~~~e~~~~-i--~g~~-~~~~vl~~i~~~ 40 (172)
|++.+|||+.-.|.++-.- + -|.+ .|+.+.++|+.+
T Consensus 31 gV~gVnitv~EvD~ete~lkitiEG~~id~d~i~~~Ie~~ 70 (95)
T PF02680_consen 31 GVDGVNITVVEVDVETENLKITIEGDDIDFDEIKEAIEEL 70 (95)
T ss_dssp TEEEEEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHHHHT
T ss_pred CcceEEEEEEEeeccccEEEEEEEeCCCCHHHHHHHHHHc
Confidence 4556666666655554221 1 2322 455555555544
No 368
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=35.22 E-value=1.8e+02 Score=23.39 Aligned_cols=66 Identities=8% Similarity=-0.007 Sum_probs=39.6
Q ss_pred CCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHc-CCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeE
Q psy5052 6 LDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQL-GYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDV 77 (172)
Q Consensus 6 l~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~-g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~ 77 (172)
.+.+.|.+.+.....+..-- .+..+.+.+-+++++++ ++ +|.+.+ + .+.++..++++.+.+.|++.
T Consensus 119 ~d~ielN~~cP~~~~~g~~l-~~~~~~~~eiv~~vr~~~~~-pv~vKi---~-~~~~~~~~~a~~l~~~G~d~ 185 (300)
T TIGR01037 119 VDAYELNLSCPHVKGGGIAI-GQDPELSADVVKAVKDKTDV-PVFAKL---S-PNVTDITEIAKAAEEAGADG 185 (300)
T ss_pred cCEEEEECCCCCCCCCcccc-ccCHHHHHHHHHHHHHhcCC-CEEEEC---C-CChhhHHHHHHHHHHcCCCE
Confidence 56666666655432111000 12466667777777654 66 666653 3 36667888999898999874
No 369
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=35.13 E-value=1.3e+02 Score=20.83 Aligned_cols=50 Identities=16% Similarity=0.297 Sum_probs=30.5
Q ss_pred CCHH--HHHHHHHHHhcCCC-eEE-EEeeeeCCCCC-CCCCCCCCHHHHHHHHHH
Q psy5052 58 FNDD--EILDFVLLTRDRPI-DVR-FIEYMPFSGNQ-WNNTKIMPFSEMLTKIKE 107 (172)
Q Consensus 58 ~N~~--ei~~l~~~a~~~g~-~~~-~i~~~p~g~~~-~~~~~~~~~~e~~~~l~~ 107 (172)
.|++ |+.-+++-+++.|+ .+. +++|+|+.+.. ..+.+.++.+-+-+.|+.
T Consensus 60 ~nd~lmeLll~i~a~r~~~a~~i~~ViPYl~YaRQDr~~~ge~isak~~a~lL~~ 114 (116)
T PF13793_consen 60 VNDNLMELLLLIDALRRAGAKRITLVIPYLPYARQDRRKPGEPISAKVVAKLLSA 114 (116)
T ss_dssp HHHHHHHHHHHHHHHHHTTBSEEEEEESS-TTTTSSSSSTTC--HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHcCCcEEEEeccchhhhhhccCCCCCcchHHHHHHHHHh
Confidence 4454 66678888888887 454 45789998743 233456777766666654
No 370
>COG3343 RpoE DNA-directed RNA polymerase, delta subunit [Transcription]
Probab=35.02 E-value=79 Score=23.86 Aligned_cols=63 Identities=24% Similarity=0.406 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHH-HHHHHHhcCCCeEEEEeeeeCCCCCCCCCCCCCHHHHHHHHHH
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEIL-DFVLLTRDRPIDVRFIEYMPFSGNQWNNTKIMPFSEMLTKIKE 107 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~-~l~~~a~~~g~~~~~i~~~p~g~~~~~~~~~~~~~e~~~~l~~ 107 (172)
.|..+++-|.++.. .+..++. .+..|=..+..+-||| |.|...|.....++..++-+.+..
T Consensus 32 ~F~dii~EI~~~~~---------------~s~~ei~~~i~~FYTdln~DgrFi---~LGdn~WgLRswy~~Deideei~~ 93 (175)
T COG3343 32 NFSDIINEIQKLLG---------------VSKEEIRSRIGQFYTDLNIDGRFI---SLGDNKWGLRSWYPLDEIDEEIQA 93 (175)
T ss_pred cHHHHHHHHHHHhC---------------cCHHHHHHHHHHHHHHhccCCcee---eccccccchhhccchhHHHHHHhh
Confidence 67777777766542 3445544 4667777888888876 668888988888999888776654
Q ss_pred hC
Q psy5052 108 AH 109 (172)
Q Consensus 108 ~~ 109 (172)
.+
T Consensus 94 ~~ 95 (175)
T COG3343 94 MT 95 (175)
T ss_pred hh
Confidence 43
No 371
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=34.98 E-value=1.2e+02 Score=23.88 Aligned_cols=100 Identities=16% Similarity=0.178 Sum_probs=54.1
Q ss_pred hhcCCCeEE-EeeeCCCHh------hhccccC-------CCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHH
Q psy5052 2 KKAGLDSIN-ISLDTLKPD------KYEFITR-------RKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFV 67 (172)
Q Consensus 2 ~~aGl~~v~-iSlds~~~e------~~~~i~g-------~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~ 67 (172)
.+.|.+.+. +.||++... .-+++.. .+.. +-++.++.+.+.|..+|.|++...+ |-+-+.++.
T Consensus 40 ~~~ga~~lhivDLd~a~~g~~~n~~~i~~i~~~~~~v~vGGGI-rs~e~~~~~l~~Ga~rvvigT~a~~--~p~~l~~~~ 116 (241)
T PRK14114 40 IEEGFTLIHVVDLSKAIENSVENLPVLEKLSEFAEHIQIGGGI-RSLDYAEKLRKLGYRRQIVSSKVLE--DPSFLKFLK 116 (241)
T ss_pred HHCCCCEEEEEECCCcccCCcchHHHHHHHHhhcCcEEEecCC-CCHHHHHHHHHCCCCEEEECchhhC--CHHHHHHHH
Confidence 457888777 788865321 1122211 0111 1245566677788877888887765 555555564
Q ss_pred HHHhcCCCeEEEEeeeeCC---CCCCCCCCCCCHHHHHHHHHHh
Q psy5052 68 LLTRDRPIDVRFIEYMPFS---GNQWNNTKIMPFSEMLTKIKEA 108 (172)
Q Consensus 68 ~~a~~~g~~~~~i~~~p~g---~~~~~~~~~~~~~e~~~~l~~~ 108 (172)
+|..+ +-+.+ ... -| ...|.....++..|+.+.+++.
T Consensus 117 ~~~~~--ivvsl-D~k-~g~v~~~gw~~~~~~~~~e~~~~~~~~ 156 (241)
T PRK14114 117 EIDVE--PVFSL-DTR-GGKVAFKGWLAEEEIDPVSLLKRLKEY 156 (241)
T ss_pred HhCCC--EEEEE-Ecc-CCEEeeCCCeecCCCCHHHHHHHHHhc
Confidence 44221 21111 111 01 1236655667888888888764
No 372
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=34.86 E-value=1.8e+02 Score=23.01 Aligned_cols=52 Identities=19% Similarity=0.302 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEecCCC--HHHHHHHHHHH-----------hcCCCeEEEE
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVVVMKNFN--DDEILDFVLLT-----------RDRPIDVRFI 80 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N--~~ei~~l~~~a-----------~~~g~~~~~i 80 (172)
.++.+.+.++.+.+.|++.|++=.-=+.+.+ .+|+..++++. .+.|+.++++
T Consensus 32 G~~~l~~i~~~~~~lgIk~lTvYaFS~eN~~R~~~Ev~~Lm~L~~~~l~~~~~~~~~~~irvr~i 96 (233)
T PRK14841 32 GAEVLHNTVKWSLELGIKYLTAFSFSTENWKRPKEEVEFLMDLFVQMIDREMELLRRERVRVRIL 96 (233)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEeeeHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEEE
Confidence 5889999999999999964554432232222 35776666554 3567888876
No 373
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=34.75 E-value=1.4e+02 Score=24.64 Aligned_cols=51 Identities=10% Similarity=0.130 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEEE
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRF 79 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~~ 79 (172)
+.+++++.++.+.+.|++.+.+..-..+..+.+.+.++++..++.+..+.+
T Consensus 71 s~eeI~e~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~~ 121 (343)
T TIGR03551 71 SLEEIAERAAEAWKAGATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMHI 121 (343)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCceE
Confidence 789999999999998885444331112223455667777777765433333
No 374
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional
Probab=34.73 E-value=1.4e+02 Score=23.66 Aligned_cols=52 Identities=13% Similarity=0.143 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEecCCC--HHHHHHHHHHHh-----------cCCCeEEEE
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVVVMKNFN--DDEILDFVLLTR-----------DRPIDVRFI 80 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N--~~ei~~l~~~a~-----------~~g~~~~~i 80 (172)
+++.+.+.++.+.+.|++.+++=.-=+.+.+ .+|+..+++++. +.|+.++++
T Consensus 33 G~~~l~~~~~~c~~~gI~~lTvyaFS~eN~~R~~~Ev~~Lm~L~~~~l~~~~~~~~~~~irvr~i 97 (233)
T PRK14833 33 GVKTLREITIWCANHKLECLTLYAFSTENWKRPKSEVDFLMKLLKKYLKDERSTYLENNIRFKAI 97 (233)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeecchhhcCcCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 5889999999999999964554432222222 357776666554 357777775
No 375
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=34.67 E-value=1.8e+02 Score=23.11 Aligned_cols=56 Identities=16% Similarity=0.171 Sum_probs=38.6
Q ss_pred CCHhhhccccCC------CCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEEEEee
Q psy5052 16 LKPDKYEFITRR------KGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRFIEY 82 (172)
Q Consensus 16 ~~~e~~~~i~g~------~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~~i~~ 82 (172)
+-||...++|-. +.++.+.+.|+.++++|+ +|++- +=+ + .+-++.|++.|++ .+|+
T Consensus 89 LVPEkr~E~TTegGldv~~~~~~l~~~i~~l~~~gI-~VSLF--iDP--d----~~qi~~A~~~GAd--~VEL 150 (234)
T cd00003 89 LVPEKREELTTEGGLDVAGQAEKLKPIIERLKDAGI-RVSLF--IDP--D----PEQIEAAKEVGAD--RVEL 150 (234)
T ss_pred ECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCC-EEEEE--eCC--C----HHHHHHHHHhCcC--EEEE
Confidence 346677777622 257888899999999999 67654 223 2 3566888889987 4554
No 376
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=34.49 E-value=2e+02 Score=23.24 Aligned_cols=52 Identities=19% Similarity=0.213 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEe----------cCCCHHHHHHHHHHHhcCCCeEEEE
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVVVM----------KNFNDDEILDFVLLTRDRPIDVRFI 80 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v~~----------~g~N~~ei~~l~~~a~~~g~~~~~i 80 (172)
..+++.+.++.+.+.|...||+-+.-- ...+.+++.++++.|++.|..+...
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H 179 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYVAAH 179 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEEEEE
Confidence 467788889999988986677665310 1256778999999999999776543
No 377
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=34.48 E-value=1.9e+02 Score=23.56 Aligned_cols=14 Identities=7% Similarity=-0.154 Sum_probs=6.5
Q ss_pred HHHHHHHHhcCCCe
Q psy5052 63 ILDFVLLTRDRPID 76 (172)
Q Consensus 63 i~~l~~~a~~~g~~ 76 (172)
.++..+|+++.|++
T Consensus 155 pe~a~~Fv~~TgvD 168 (283)
T PRK07998 155 PEKVKDFVERTGCD 168 (283)
T ss_pred HHHHHHHHHHhCcC
Confidence 33444455545544
No 378
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=34.43 E-value=1.6e+02 Score=26.34 Aligned_cols=49 Identities=14% Similarity=0.156 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEEEEee
Q psy5052 30 WSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRFIEY 82 (172)
Q Consensus 30 ~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~~i~~ 82 (172)
++..++.++.+.++|. +|-|.-+. ....+-..++++|++.|+.++++.+
T Consensus 406 ~~~~~~~a~~~L~~G~-sVVIDaTn---~~~~~R~~~i~lAk~~gv~v~~i~~ 454 (526)
T TIGR01663 406 TQNCLTACERALDQGK-RCAIDNTN---PDAASRAKFLQCARAAGIPCRCFLF 454 (526)
T ss_pred HHHHHHHHHHHHhCCC-cEEEECCC---CCHHHHHHHHHHHHHcCCeEEEEEe
Confidence 5667778888888996 66665432 2334678899999999999888755
No 379
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=34.28 E-value=60 Score=26.85 Aligned_cols=46 Identities=15% Similarity=0.163 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCe-EEEEe
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPID-VRFIE 81 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~-~~~i~ 81 (172)
.++.++++++...+ + ||-+- +.+ |.+++.++++.+.+.|++ +..++
T Consensus 148 ~l~~l~~~vk~~~~--~-Pv~vK--l~P--~~~di~~iA~~~~~~g~Dgl~~~N 194 (310)
T COG0167 148 LLEKLLEAVKAATK--V-PVFVK--LAP--NITDIDEIAKAAEEAGADGLIAIN 194 (310)
T ss_pred HHHHHHHHHHhccc--C-ceEEE--eCC--CHHHHHHHHHHHHHcCCcEEEEEe
Confidence 34444544444444 3 44444 334 899999999999999986 44443
No 380
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=33.96 E-value=1.6e+02 Score=23.91 Aligned_cols=46 Identities=11% Similarity=0.085 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeE
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDV 77 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~ 77 (172)
.-+.|.+.++.+.++|+ + .-+++..|+-..+-.++.+.|++.|+.+
T Consensus 72 pa~~v~~~l~e~~~~Gv-k--~avIis~Gf~e~~~~~l~~~a~~~giri 117 (286)
T TIGR01019 72 PAPFAADAIFEAIDAGI-E--LIVCITEGIPVHDMLKVKRYMEESGTRL 117 (286)
T ss_pred CHHHHHHHHHHHHHCCC-C--EEEEECCCCCHHHHHHHHHHHHHcCCEE
Confidence 36778888888888887 3 2334556665544467888888887653
No 381
>PRK13912 nuclease NucT; Provisional
Probab=33.81 E-value=1.6e+02 Score=21.80 Aligned_cols=45 Identities=13% Similarity=0.268 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEEEE
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRFI 80 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~~i 80 (172)
.++.+++.|+.+++ .|.+.+-.. .+.++.+.+.-|.+.|++|+++
T Consensus 34 ~~~~l~~~I~~Ak~----sI~i~~Y~~---~~~~i~~aL~~Aa~RGV~VrIl 78 (177)
T PRK13912 34 ALNKLVSLISNARS----SIKIAIYSF---THKDIAKALKSAAKRGVKISII 78 (177)
T ss_pred HHHHHHHHHHhccc----EEEEEEEEE---chHHHHHHHHHHHHCCCEEEEE
Confidence 36777788877664 355554443 3356666666666799999886
No 382
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=33.74 E-value=64 Score=26.15 Aligned_cols=69 Identities=10% Similarity=0.037 Sum_probs=40.8
Q ss_pred hhcCCCeEEEeeeCCCHhhhccccCC---CCHHHHHHHHHHHHH-cCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCe
Q psy5052 2 KKAGLDSINISLDTLKPDKYEFITRR---KGWSRVLAGIDLAVQ-LGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPID 76 (172)
Q Consensus 2 ~~aGl~~v~iSlds~~~e~~~~i~g~---~~~~~vl~~i~~~~~-~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~ 76 (172)
.++|.+.|.|.+...+....+. .|. ...+.+.+-++.+++ .++ +|.+-. + .|.+++.++++.+.+.|++
T Consensus 123 ~~~gad~ielN~sCP~~~~~~~-~G~~l~~~~~~~~~iv~~v~~~~~~-Pv~vKl---~-~~~~~~~~~a~~~~~~Gad 195 (299)
T cd02940 123 EEAGADALELNFSCPHGMPERG-MGAAVGQDPELVEEICRWVREAVKI-PVIAKL---T-PNITDIREIARAAKEGGAD 195 (299)
T ss_pred HhcCCCEEEEECCCCCCCCCCC-CchhhccCHHHHHHHHHHHHHhcCC-CeEEEC---C-CCchhHHHHHHHHHHcCCC
Confidence 3567777777777666421111 110 134555555555554 355 666553 3 3666788899988888986
No 383
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=33.66 E-value=1.7e+02 Score=24.57 Aligned_cols=26 Identities=27% Similarity=0.263 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCcEEEEE
Q psy5052 27 RKGWSRVLAGIDLAVQLGYDNLKVNV 52 (172)
Q Consensus 27 ~~~~~~vl~~i~~~~~~g~~~v~in~ 52 (172)
.|+|+++.+.|++++++|-.-|++.+
T Consensus 26 nG~le~A~~lIdaAk~aGADavKfQt 51 (347)
T COG2089 26 NGDLERAKELIDAAKEAGADAVKFQT 51 (347)
T ss_pred cCcHHHHHHHHHHHHHcCcceeeeec
Confidence 46899999999999999976688887
No 384
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=33.60 E-value=1.9e+02 Score=22.87 Aligned_cols=64 Identities=19% Similarity=0.297 Sum_probs=0.0
Q ss_pred ChhcCCCeEE-EeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEEE
Q psy5052 1 YKKAGLDSIN-ISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRF 79 (172)
Q Consensus 1 L~~aGl~~v~-iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~~ 79 (172)
|++.|.+.|. ..+++++ ..++...-.+++.+.|+ ++. -+-|+..+.++.+++.|.+-|+.
T Consensus 144 l~dmG~~SiKffPM~Gl~-----------~leE~~avA~aca~~g~-~lE----PTGGIdl~Nf~~I~~i~ldaGv~--- 204 (236)
T TIGR03581 144 LKDMGGSSVKFFPMGGLK-----------HLEEYAAVAKACAKHGF-YLE----PTGGIDLDNFEEIVQIALDAGVE--- 204 (236)
T ss_pred HHHcCCCeeeEeecCCcc-----------cHHHHHHHHHHHHHcCC-ccC----CCCCccHHhHHHHHHHHHHcCCC---
Q ss_pred Eeeee
Q psy5052 80 IEYMP 84 (172)
Q Consensus 80 i~~~p 84 (172)
.+||
T Consensus 205 -kviP 208 (236)
T TIGR03581 205 -KVIP 208 (236)
T ss_pred -eecc
No 385
>PLN02321 2-isopropylmalate synthase
Probab=33.47 E-value=3.8e+02 Score=24.56 Aligned_cols=96 Identities=10% Similarity=0.072 Sum_probs=52.5
Q ss_pred eEEEeeeCCCHhhhccccC--CCCHHHHHHHHHHHHHcCCCcEEEEEE-EecCCCHHHHHHHHHHHhcCCCeEEEEeeee
Q psy5052 8 SINISLDTLKPDKYEFITR--RKGWSRVLAGIDLAVQLGYDNLKVNVV-VMKNFNDDEILDFVLLTRDRPIDVRFIEYMP 84 (172)
Q Consensus 8 ~v~iSlds~~~e~~~~i~g--~~~~~~vl~~i~~~~~~g~~~v~in~v-~~~g~N~~ei~~l~~~a~~~g~~~~~i~~~p 84 (172)
+|++.+-+.+--...+++. ...++.+.+.++.+++.|...+.+..- ..+ .+.+.+.++++-+.+.|++. |.+-.
T Consensus 185 ~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~EDa~r-td~d~l~~~~~~a~~aGa~~--I~L~D 261 (632)
T PLN02321 185 RIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPEDAGR-SDPEFLYRILGEVIKAGATT--LNIPD 261 (632)
T ss_pred EEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecccCCC-CCHHHHHHHHHHHHHcCCCE--EEecc
Confidence 5666664443323333432 125777888888899888622444432 122 35566778888888889862 33322
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhCC
Q psy5052 85 FSGNQWNNTKIMPFSEMLTKIKEAHP 110 (172)
Q Consensus 85 ~g~~~~~~~~~~~~~e~~~~l~~~~~ 110 (172)
+-+. . .+....++++.|.+.++
T Consensus 262 TvG~-~---~P~~v~~li~~l~~~~~ 283 (632)
T PLN02321 262 TVGY-T---LPSEFGQLIADIKANTP 283 (632)
T ss_pred cccC-C---CHHHHHHHHHHHHHhcC
Confidence 2111 1 12234556666766665
No 386
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.32 E-value=2.7e+02 Score=22.81 Aligned_cols=66 Identities=14% Similarity=0.026 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHc-CCCcEEEEEEEecCCCHH---HHHHHHHHHhcCCCeEEEEeeeeCCCCCCCCCCCCCHHHHHHHHH
Q psy5052 31 SRVLAGIDLAVQL-GYDNLKVNVVVMKNFNDD---EILDFVLLTRDRPIDVRFIEYMPFSGNQWNNTKIMPFSEMLTKIK 106 (172)
Q Consensus 31 ~~vl~~i~~~~~~-g~~~v~in~v~~~g~N~~---ei~~l~~~a~~~g~~~~~i~~~p~g~~~~~~~~~~~~~e~~~~l~ 106 (172)
+++.+.++.+++. |+ +.++-+++.- -+.+ .+..-.+.|++.|+....+.+ ++..+.+|+++.|+
T Consensus 16 ~~i~~~v~~l~~~~g~-~p~La~i~vg-~~~~s~~Yv~~k~k~a~~~Gi~~~~~~l----------~~~~~~~el~~~i~ 83 (296)
T PRK14188 16 ATVAAEVARLKAAHGV-TPGLAVVLVG-EDPASQVYVRSKGKQTKEAGMASFEHKL----------PADTSQAELLALIA 83 (296)
T ss_pred HHHHHHHHHHHHccCC-CCeEEEEEeC-CChhHHHHHHHHHHHHHHcCCEEEEEEC----------CCCCCHHHHHHHHH
Confidence 4555666666655 77 4566665543 2332 366678888889988766655 12345566666666
Q ss_pred Hh
Q psy5052 107 EA 108 (172)
Q Consensus 107 ~~ 108 (172)
+.
T Consensus 84 ~l 85 (296)
T PRK14188 84 RL 85 (296)
T ss_pred HH
Confidence 54
No 387
>PRK08123 histidinol-phosphatase; Reviewed
Probab=33.28 E-value=71 Score=25.44 Aligned_cols=11 Identities=36% Similarity=0.413 Sum_probs=7.7
Q ss_pred CCeEEEeeeCC
Q psy5052 6 LDSINISLDTL 16 (172)
Q Consensus 6 l~~v~iSlds~ 16 (172)
+|.|-.|+|.+
T Consensus 111 ~DyvIgSvH~~ 121 (270)
T PRK08123 111 LDDSILSVHFL 121 (270)
T ss_pred cceEEEEEEEE
Confidence 57777788744
No 388
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.26 E-value=2.7e+02 Score=22.72 Aligned_cols=67 Identities=13% Similarity=0.063 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHc-CCCcEEEEEEEecCCCHH---HHHHHHHHHhcCCCeEEEEeeeeCCCCCCCCCCCCCHHHHHHHH
Q psy5052 30 WSRVLAGIDLAVQL-GYDNLKVNVVVMKNFNDD---EILDFVLLTRDRPIDVRFIEYMPFSGNQWNNTKIMPFSEMLTKI 105 (172)
Q Consensus 30 ~~~vl~~i~~~~~~-g~~~v~in~v~~~g~N~~---ei~~l~~~a~~~g~~~~~i~~~p~g~~~~~~~~~~~~~e~~~~l 105 (172)
.+++.+.++.+++. |+ .-++-+++.- -+.+ .+....+.|+++|+....+.+- +..+.+|+++.|
T Consensus 14 ~~~lk~~v~~~~~~~g~-~P~La~I~vg-~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~----------~~~~~~el~~~I 81 (282)
T PRK14180 14 KERLATQVQEYKHHTAI-TPKLVAIIVG-NDPASKTYVASKEKACAQVGIDSQVITLP----------EHTTESELLELI 81 (282)
T ss_pred HHHHHHHHHHHHhccCC-CCeEEEEEeC-CCHHHHHHHHHHHHHHHHcCCEEEEEECC----------CCCCHHHHHHHH
Confidence 34556666777655 76 4566655543 3332 3667888899999987776551 234456666666
Q ss_pred HHh
Q psy5052 106 KEA 108 (172)
Q Consensus 106 ~~~ 108 (172)
++.
T Consensus 82 ~~l 84 (282)
T PRK14180 82 DQL 84 (282)
T ss_pred HHH
Confidence 654
No 389
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=33.13 E-value=1.2e+02 Score=23.76 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=22.0
Q ss_pred ChhcCCCeEE-EeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcC
Q psy5052 1 YKKAGLDSIN-ISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLG 44 (172)
Q Consensus 1 L~~aGl~~v~-iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g 44 (172)
|+..|++.|- +-||..+.... ..+++++.++.+++.|
T Consensus 92 L~~L~~d~iDl~~lH~~~~~~~-------~~~~~~~~l~~l~~~G 129 (283)
T PF00248_consen 92 LERLGTDYIDLLLLHWPDPSED-------ALEEVWEALEELKKEG 129 (283)
T ss_dssp HHHHTSSSEEEEEESSSSTTSS-------HHHHHHHHHHHHHHTT
T ss_pred cccccccchhcccccccccccc-------ccchhhhhhhhccccc
Confidence 3456677665 66676654332 3566666666666665
No 390
>PRK14836 undecaprenyl pyrophosphate synthase; Provisional
Probab=33.00 E-value=96 Score=24.85 Aligned_cols=52 Identities=27% Similarity=0.375 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEecCC--CHHHHHHHHHHHh-----------cCCCeEEEE
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVVVMKNF--NDDEILDFVLLTR-----------DRPIDVRFI 80 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v~~~g~--N~~ei~~l~~~a~-----------~~g~~~~~i 80 (172)
.++.+.+-++.+.+.|++.+++-.--+.+. ..+|+..++++.. +.|+.++++
T Consensus 43 G~~~~~~iv~~c~~~gI~~lTvYaFS~eN~~R~~~EV~~Lm~l~~~~l~~~~~~~~~~~irv~vi 107 (253)
T PRK14836 43 GVRAVRRTIEFCLEKGIEMLTLFAFSSENWLRPADEVSALMELFLKALDREVDKLHRNGIRVRFI 107 (253)
T ss_pred HHHHHHHHHHHHHHcCCCEEehhHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 588999999999999996566554333322 2357777776654 368888776
No 391
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=32.94 E-value=3.5e+02 Score=24.02 Aligned_cols=73 Identities=16% Similarity=0.160 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEecCC---CHHHHHHHHHHHhcCCC-eEEEEeeeeCCCCCCCCCCCCCHHHHHHHH
Q psy5052 30 WSRVLAGIDLAVQLGYDNLKVNVVVMKNF---NDDEILDFVLLTRDRPI-DVRFIEYMPFSGNQWNNTKIMPFSEMLTKI 105 (172)
Q Consensus 30 ~~~vl~~i~~~~~~g~~~v~in~v~~~g~---N~~ei~~l~~~a~~~g~-~~~~i~~~p~g~~~~~~~~~~~~~e~~~~l 105 (172)
-+..+++++.+++.|- .+-+-=.+-.|= +.+.+.+|+++|++.|+ .+.+.-++ -||. . .+-|..++++.|
T Consensus 91 n~~l~~~~~~~~~~~~-~lHl~GL~SdGgVHsh~~hl~~l~~~a~~~g~~~v~vH~~~-DGRD--~--~p~s~~~~~~~l 164 (501)
T TIGR01307 91 NPALLGAIDRAKDNNG-KLHLMGLVSDGGVHSHIDHLIALIELAAERGIEKVVLHAFT-DGRD--T--APKSAESYLEQL 164 (501)
T ss_pred CHHHHHHHHHHHhcCC-ceEEEEeccCCCCcchHHHHHHHHHHHHHcCCCeEEEEEec-CCCC--C--CchhHHHHHHHH
Confidence 3566788888888885 788777776651 23469999999999999 45554443 3331 1 233455555555
Q ss_pred HHh
Q psy5052 106 KEA 108 (172)
Q Consensus 106 ~~~ 108 (172)
++.
T Consensus 165 ~~~ 167 (501)
T TIGR01307 165 QAF 167 (501)
T ss_pred HHH
Confidence 554
No 392
>PRK13663 hypothetical protein; Provisional
Probab=32.89 E-value=1.7e+02 Score=25.49 Aligned_cols=70 Identities=20% Similarity=0.149 Sum_probs=49.2
Q ss_pred eEEEeeeCCCHhhhccccCC-C-CH-HHHHHHHHHHHHcCCCcEEEEEEEecCCCH-HHHHHHHHHHhcCCCeEEEEe
Q psy5052 8 SINISLDTLKPDKYEFITRR-K-GW-SRVLAGIDLAVQLGYDNLKVNVVVMKNFND-DEILDFVLLTRDRPIDVRFIE 81 (172)
Q Consensus 8 ~v~iSlds~~~e~~~~i~g~-~-~~-~~vl~~i~~~~~~g~~~v~in~v~~~g~N~-~ei~~l~~~a~~~g~~~~~i~ 81 (172)
.|-|-+.+-|=| ..++|+- | ++ ..|++-|+.+++.|+ .|. ++|+++ .+. .....+.+-..++|+.+....
T Consensus 67 EIvi~I~A~DIe-~nKiRgDlGItYd~dVLRLiD~fr~~gl-~V~-sVVITq-y~~qp~a~~F~~rLe~~GIkvy~Hy 140 (493)
T PRK13663 67 EIVIAINANDIE-RNKIRGDLGITYDQDVLRLIDDFRELGL-YVG-SVVITQ-YDGQPAADAFRNRLERLGIKVYRHY 140 (493)
T ss_pred eEEEEEEhhhhh-hccccccCCCchhHHHHHHHHHHHhcCc-eee-eEEEEe-cCCChHHHHHHHHHHHCCCceEEec
Confidence 466777777655 4778863 2 33 679999999999998 443 455566 443 456678888889999886543
No 393
>KOG1577|consensus
Probab=32.89 E-value=1.2e+02 Score=25.05 Aligned_cols=73 Identities=15% Similarity=0.227 Sum_probs=40.0
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHH------------------------HHHHHhcCCCeEEEEeeee
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILD------------------------FVLLTRDRPIDVRFIEYMP 84 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~------------------------l~~~a~~~g~~~~~i~~~p 84 (172)
.+..+.++++.+.+.|. -=.|. ..++|...+++ |++||++.|+. +.-|.|
T Consensus 136 ~~~~tW~amE~~~~~Gl-~rsIG---VSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~Q~~L~~fCk~~~I~--v~AYSp 209 (300)
T KOG1577|consen 136 DRIETWKAMEKLVDEGL-VRSIG---VSNFNIKQLEELLNLAKIKPAVNQVECHPYLQQKKLVEFCKSKGIV--VTAYSP 209 (300)
T ss_pred hHHHHHHHHHHHHHcCC-ceEee---eecCCHHHHHHHHhcCCCCCccceeeccCCcChHHHHHHHhhCCcE--EEEecC
Confidence 57889999999999984 11121 12244444443 56667777665 335667
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhC
Q psy5052 85 FSGNQWNNTKIMPFSEMLTKIKEAH 109 (172)
Q Consensus 85 ~g~~~~~~~~~~~~~e~~~~l~~~~ 109 (172)
.|+.... . .+-.++.+..|.++|
T Consensus 210 Lg~~~~~-~-~ll~~~~l~~iA~K~ 232 (300)
T KOG1577|consen 210 LGSPGRG-S-DLLEDPVLKEIAKKY 232 (300)
T ss_pred CCCCCCc-c-ccccCHHHHHHHHHh
Confidence 7764321 1 222333445555544
No 394
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=32.78 E-value=1.3e+02 Score=25.42 Aligned_cols=48 Identities=13% Similarity=0.238 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEecCCC----HHHHHHHHHHHhcCCCeE
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVVVMKNFN----DDEILDFVLLTRDRPIDV 77 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N----~~ei~~l~~~a~~~g~~~ 77 (172)
.+++..+-|+.+.++|++ --+....++... .+++.+++++|+++|..+
T Consensus 12 ~~~~~~~yi~~a~~~Gf~-~iFTSL~ipe~~~~~~~~~~~~l~~~a~~~~~~v 63 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFK-RIFTSLHIPEDDPEDYLERLKELLKLAKELGMEV 63 (357)
T ss_dssp -HHHHHHHHHHHHCTTEE-EEEEEE---------HHHHHHHHHHHHHHCT-EE
T ss_pred CHHHHHHHHHHHHHCCCC-EEECCCCcCCCCHHHHHHHHHHHHHHHHHCCCEE
Confidence 577777888888888873 233333333211 135777888888888764
No 395
>PRK11024 colicin uptake protein TolR; Provisional
Probab=32.74 E-value=75 Score=22.71 Aligned_cols=22 Identities=9% Similarity=0.359 Sum_probs=14.9
Q ss_pred CHHHHHHHHHHHHHcCCCcEEE
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKV 50 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~i 50 (172)
.|+.+++.++.++++|+.++.+
T Consensus 115 ~~~~vv~vmd~~k~aG~~~v~l 136 (141)
T PRK11024 115 PYDEIIKALNLLHSAGVKSVGL 136 (141)
T ss_pred CHHHHHHHHHHHHHcCCCeEEE
Confidence 4777777777777777754444
No 396
>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional
Probab=32.72 E-value=1.7e+02 Score=24.41 Aligned_cols=72 Identities=22% Similarity=0.341 Sum_probs=42.4
Q ss_pred CeEEEeeeCCCHhhhccccCC----C---CHHHHHHHHHHHHHcCCCcEEEEEEEecCCC--HHHHHHHHHHH-------
Q psy5052 7 DSINISLDTLKPDKYEFITRR----K---GWSRVLAGIDLAVQLGYDNLKVNVVVMKNFN--DDEILDFVLLT------- 70 (172)
Q Consensus 7 ~~v~iSlds~~~e~~~~i~g~----~---~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N--~~ei~~l~~~a------- 70 (172)
..|.|=+||= ..+.+-+|- | +++.+.+.++.+.+.|++.+++-.-=+.+++ .+|+..|++++
T Consensus 21 ~HVAiIMDGN--rRwAk~~gl~~~~GH~~G~~~l~~il~~c~~lGIk~lTlYAFStENwkRp~~EV~~Lm~L~~~~l~~~ 98 (322)
T PTZ00349 21 KHISIIMDGN--RRFAKEKGLHSAIGHFMGSKALIQIIEICIKLKIKILSVFSFSLLNYNRSPEEIHFLFYLNLLILINE 98 (322)
T ss_pred CcEEEEcCCC--HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhhCCCHHHHHHHHHHHHHHHHHh
Confidence 3555666652 233333331 1 5899999999999999964554432222222 24666555443
Q ss_pred -------hcCCCeEEEE
Q psy5052 71 -------RDRPIDVRFI 80 (172)
Q Consensus 71 -------~~~g~~~~~i 80 (172)
.+.|+.++++
T Consensus 99 ~~~~~~l~~~~irirvi 115 (322)
T PTZ00349 99 DFFFKFIKDNKIKIKII 115 (322)
T ss_pred hhhHHHHHHCCCEEEEE
Confidence 4578888876
No 397
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=32.71 E-value=1.4e+02 Score=24.40 Aligned_cols=49 Identities=18% Similarity=0.284 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEe-------c------------------CCCHHHHHHHHHHHhcCCCeE
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVVVM-------K------------------NFNDDEILDFVLLTRDRPIDV 77 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v~~-------~------------------g~N~~ei~~l~~~a~~~g~~~ 77 (172)
+.+.+.+-|+.+...++..+.+-++=. + -.+.+|+.+|+++|+++|+.|
T Consensus 16 ~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~V 89 (351)
T PF00728_consen 16 SVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIEV 89 (351)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-EE
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCHHHHHHHHHHHHHcCCce
Confidence 577777888888777664344443211 0 034478999999999999874
No 398
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=32.54 E-value=1.7e+02 Score=23.25 Aligned_cols=52 Identities=19% Similarity=0.289 Sum_probs=33.6
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEecCC--CHHHHHHHHHHHh-----------cCCCeEEEE
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVVVMKNF--NDDEILDFVLLTR-----------DRPIDVRFI 80 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v~~~g~--N~~ei~~l~~~a~-----------~~g~~~~~i 80 (172)
.++.+.+.++.+.+.|++.|++-.-=+.+. ..+|+..++++++ +.|+.++++
T Consensus 43 G~~~l~~iv~~c~~~gI~~vTvYaFS~eN~kR~~~Ev~~lm~L~~~~l~~~~~~~~~~~iri~~i 107 (243)
T PRK14829 43 GEPVLFDVVAGAIEAGVPYLSLYTFSTENWKRSPDEVRFLMGFSRDVIHRRREQMDEWGVRVRWS 107 (243)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeeecchhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEEE
Confidence 488899999999999996455432212212 2357776666543 567888776
No 399
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=32.34 E-value=2.5e+02 Score=21.99 Aligned_cols=14 Identities=21% Similarity=0.244 Sum_probs=7.8
Q ss_pred HHHHHHHHhcCCCe
Q psy5052 63 ILDFVLLTRDRPID 76 (172)
Q Consensus 63 i~~l~~~a~~~g~~ 76 (172)
+...+++|+.+|+.
T Consensus 96 ~~~~i~~a~~lG~~ 109 (284)
T PRK13210 96 MKKAIRLAQDLGIR 109 (284)
T ss_pred HHHHHHHHHHhCCC
Confidence 44555556666654
No 400
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=32.14 E-value=3.1e+02 Score=23.11 Aligned_cols=68 Identities=10% Similarity=0.136 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHc-CCCcEEEEEEEecCCCHH---HHHHHHHHHhcCCCeEEEEeeeeCCCCCCCCCCCCCHHHHHHHH
Q psy5052 30 WSRVLAGIDLAVQL-GYDNLKVNVVVMKNFNDD---EILDFVLLTRDRPIDVRFIEYMPFSGNQWNNTKIMPFSEMLTKI 105 (172)
Q Consensus 30 ~~~vl~~i~~~~~~-g~~~v~in~v~~~g~N~~---ei~~l~~~a~~~g~~~~~i~~~p~g~~~~~~~~~~~~~e~~~~l 105 (172)
.+++.+-++.+++. |+ .-++-+++.- .+.+ .+..-.+.|++.|+....+++ ++..+.+|+++.|
T Consensus 69 ~~~lk~~v~~l~~~~g~-~P~LaiIlvG-ddpaS~~Yv~~k~K~a~~~GI~~~~~~l----------~~~~te~ell~~I 136 (345)
T PLN02897 69 RTKIASEVRKMKKAVGK-VPGLAVVLVG-QQRDSQTYVRNKIKACEETGIKSLLAEL----------PEDCTEGQILSAL 136 (345)
T ss_pred HHHHHHHHHHHHhccCC-CCeEEEEEeC-CChHHHHHHHHHHHHHHhcCCEEEEEEC----------CCCCCHHHHHHHH
Confidence 35555666667665 77 4566666553 3332 366788899999998777766 1234667777777
Q ss_pred HHhC
Q psy5052 106 KEAH 109 (172)
Q Consensus 106 ~~~~ 109 (172)
++..
T Consensus 137 ~~lN 140 (345)
T PLN02897 137 RKFN 140 (345)
T ss_pred HHHh
Confidence 7653
No 401
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=32.02 E-value=3.2e+02 Score=23.18 Aligned_cols=73 Identities=10% Similarity=0.071 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHH--------HHHHHHHHhcCCCeEEEEeeeeCCCCCCCCCCCCCHHH
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDE--------ILDFVLLTRDRPIDVRFIEYMPFSGNQWNNTKIMPFSE 100 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~e--------i~~l~~~a~~~g~~~~~i~~~p~g~~~~~~~~~~~~~e 100 (172)
..+++.+.++.+++.|+..+.|.+.+-.+..+.+ +..++++++++|..+.++ .+|++-. ....+.++
T Consensus 148 ~~~~~~~~l~~~~~~~l~~~Gih~HiGS~~~~~~~~~~a~~~~~~~~~~~~~~g~~l~~l---diGGGf~--~~~~~~~~ 222 (394)
T cd06831 148 TLKNCRHLLECAKELDVQIVGVKFHVSSSCKEYQTYVHALSDARCVFDMAEEFGFKMNML---DIGGGFT--GSEIQLEE 222 (394)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEE---EeCCCcC--CCCCCHHH
Confidence 6788888888888888855777777655433221 245778888888775554 5576521 12245555
Q ss_pred HHHHHH
Q psy5052 101 MLTKIK 106 (172)
Q Consensus 101 ~~~~l~ 106 (172)
+.+.|.
T Consensus 223 ~~~~i~ 228 (394)
T cd06831 223 VNHVIR 228 (394)
T ss_pred HHHHHH
Confidence 444433
No 402
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=32.02 E-value=1.3e+02 Score=23.90 Aligned_cols=42 Identities=26% Similarity=0.401 Sum_probs=29.4
Q ss_pred HcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCC-eEEEEeeeeCCC
Q psy5052 42 QLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPI-DVRFIEYMPFSG 87 (172)
Q Consensus 42 ~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~-~~~~i~~~p~g~ 87 (172)
+.|+.+|-|-+| . ...++..++++.++.|+ .++++++|=+-+
T Consensus 164 ~~~f~~v~v~~v--e--~yP~~d~vi~~l~~~~~~~v~L~PlMlvAG 206 (265)
T COG4822 164 EYGFDNVFVAAV--E--GYPLVDTVIEYLRKNGIKEVHLIPLMLVAG 206 (265)
T ss_pred hcCCCceEEEEe--c--CCCcHHHHHHHHHHcCCceEEEeeeEEeec
Confidence 456654544433 3 45678889999999998 589999886654
No 403
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=31.94 E-value=1.5e+02 Score=24.04 Aligned_cols=47 Identities=11% Similarity=0.237 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHHHhcCCCeEEEEeeeeCCCCCCC------------CCCCCCHHHHHHHHHHhC
Q psy5052 57 NFNDDEILDFVLLTRDRPIDVRFIEYMPFSGNQWN------------NTKIMPFSEMLTKIKEAH 109 (172)
Q Consensus 57 g~N~~ei~~l~~~a~~~g~~~~~i~~~p~g~~~~~------------~~~~~~~~e~~~~l~~~~ 109 (172)
|.|.+.....++||+++|++..++. ..|. ......++|+.++-+++.
T Consensus 28 g~~t~~~k~yIDfAa~~G~eYvlvD------~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~Kg 86 (273)
T PF10566_consen 28 GATTETQKRYIDFAAEMGIEYVLVD------AGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKG 86 (273)
T ss_dssp SSSHHHHHHHHHHHHHTT-SEEEEB------TTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEec------cccccccccccccccccCCccCHHHHHHHHHHcC
Confidence 5788899999999999999866652 1232 123467788888877765
No 404
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=31.92 E-value=1.3e+02 Score=25.76 Aligned_cols=74 Identities=9% Similarity=0.035 Sum_probs=38.6
Q ss_pred hhcCCCeEEEeeeCCCHhhhccc---cCCCCHHHHHHHHHHHHHc-CCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCe-
Q psy5052 2 KKAGLDSINISLDTLKPDKYEFI---TRRKGWSRVLAGIDLAVQL-GYDNLKVNVVVMKNFNDDEILDFVLLTRDRPID- 76 (172)
Q Consensus 2 ~~aGl~~v~iSlds~~~e~~~~i---~g~~~~~~vl~~i~~~~~~-g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~- 76 (172)
.++|.|.+-+.+-..+-..-+.. -+ ...+.+-+-++.+++. .+ ||-+-. .+ |..++.++++-+.+.|++
T Consensus 137 e~~GaD~iELNiSCPn~~~~r~~g~~~g-q~~e~~~~i~~~Vk~~~~i-Pv~vKL--sP--n~t~i~~ia~aa~~~Gadg 210 (385)
T PLN02495 137 EETGVDALEINFSCPHGMPERKMGAAVG-QDCDLLEEVCGWINAKATV-PVWAKM--TP--NITDITQPARVALKSGCEG 210 (385)
T ss_pred HhcCCCEEEEECCCCCCCCcCccchhhc-cCHHHHHHHHHHHHHhhcC-ceEEEe--CC--ChhhHHHHHHHHHHhCCCE
Confidence 35677777666644432111111 11 1233333333444432 34 554443 24 667799999999988885
Q ss_pred EEEEe
Q psy5052 77 VRFIE 81 (172)
Q Consensus 77 ~~~i~ 81 (172)
+.+++
T Consensus 211 i~liN 215 (385)
T PLN02495 211 VAAIN 215 (385)
T ss_pred EEEec
Confidence 44443
No 405
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=31.88 E-value=2.3e+02 Score=22.17 Aligned_cols=75 Identities=16% Similarity=0.171 Sum_probs=45.8
Q ss_pred ChhcCCCeEEEeeeCCCHh---------hhccccCCCCHHHHHHHHHHHHHc-CCCcEEEEEEEecCCCH--HH-HHHHH
Q psy5052 1 YKKAGLDSINISLDTLKPD---------KYEFITRRKGWSRVLAGIDLAVQL-GYDNLKVNVVVMKNFND--DE-ILDFV 67 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e---------~~~~i~g~~~~~~vl~~i~~~~~~-g~~~v~in~v~~~g~N~--~e-i~~l~ 67 (172)
|.++|+|.+.+-+-..||- .++.+..+.+++..++-++.+++. .+ ++- +|--.|. +. +++++
T Consensus 23 l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~-pv~----lm~y~n~~~~~G~~~fi 97 (242)
T cd04724 23 LVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTI-PIV----LMGYYNPILQYGLERFL 97 (242)
T ss_pred HHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCC-CEE----EEEecCHHHHhCHHHHH
Confidence 3568999988886554441 123333334678888999888864 45 543 2221343 22 57788
Q ss_pred HHHhcCCCeEEEE
Q psy5052 68 LLTRDRPIDVRFI 80 (172)
Q Consensus 68 ~~a~~~g~~~~~i 80 (172)
+.+++.|++--.+
T Consensus 98 ~~~~~aG~~giii 110 (242)
T cd04724 98 RDAKEAGVDGLII 110 (242)
T ss_pred HHHHHCCCcEEEE
Confidence 8888888874333
No 406
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=31.88 E-value=2.4e+02 Score=21.70 Aligned_cols=51 Identities=12% Similarity=0.110 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHc-CCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEEEEeee
Q psy5052 32 RVLAGIDLAVQL-GYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRFIEYM 83 (172)
Q Consensus 32 ~vl~~i~~~~~~-g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~~i~~~ 83 (172)
.+++.|+++++. ..+++.+-+.+ .-.+..+-..+-++++++|+.+.++.++
T Consensus 136 T~lnli~al~~~~p~~~yvvasL~-d~~~~~~~~~~~~~~~~lgi~i~~vsL~ 187 (191)
T PF15609_consen 136 TFLNLIRALHAKYPRKRYVVASLL-DWRSEEDRARFEALAEELGIPIDVVSLL 187 (191)
T ss_pred HHHHHHHHHHHhCCCceEEEEEEe-eCCCHHHHHHHHHHHHHcCCcEEEEEee
Confidence 345555555543 22233333322 2235566677888999999998887664
No 407
>PRK08444 hypothetical protein; Provisional
Probab=31.85 E-value=1.1e+02 Score=25.57 Aligned_cols=44 Identities=11% Similarity=0.189 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhc
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRD 72 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~ 72 (172)
+.+++++.++.+.+.|.+.+.+..-..+....+.+.++++..++
T Consensus 81 s~eeI~~~a~~a~~~G~~ei~iv~G~~p~~~~e~y~e~ir~Ik~ 124 (353)
T PRK08444 81 SHEEILEIVKNSVKRGIKEVHIVSAHNPNYGYEWYLEIFKKIKE 124 (353)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeccCCCCCCHHHHHHHHHHHHH
Confidence 57999999999999998766666554443344566777777776
No 408
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=31.71 E-value=2.8e+02 Score=22.50 Aligned_cols=49 Identities=18% Similarity=0.154 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEE----------e--cC-CCHHHHHHHHHHHhcCCCeE
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVVV----------M--KN-FNDDEILDFVLLTRDRPIDV 77 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v~----------~--~g-~N~~ei~~l~~~a~~~g~~~ 77 (172)
..+.+.+-|+.+...|+..+.+-++= . +| .+.+|+.+++++|+++|+.|
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~~ei~ei~~yA~~~gI~v 76 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTKEEIREIDDYAAELGIEV 76 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCHHHHHHHHHHHHHcCCEE
Confidence 56777777777777766434443211 1 22 35679999999999999864
No 409
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=31.69 E-value=32 Score=22.56 Aligned_cols=25 Identities=24% Similarity=0.704 Sum_probs=15.9
Q ss_pred eEEEEcCCCCCcccCCC-ceeeccCC
Q psy5052 134 QVGFITSMTEHFCGTCN-RLRLMADG 158 (172)
Q Consensus 134 ~~g~i~~~~~~~C~~c~-~~~i~~~G 158 (172)
-+|++.+.+.-.|..|+ +..+...|
T Consensus 56 ilGvVENMs~~~Cp~Cg~~~~iFg~G 81 (81)
T PF10609_consen 56 ILGVVENMSYFVCPHCGERIYIFGKG 81 (81)
T ss_dssp EEEEEECT-EEE-TTT--EEETTTTT
T ss_pred cEEEEECCCccCCCCCCCeecCCCCC
Confidence 46888888887898886 45665554
No 410
>KOG1651|consensus
Probab=31.58 E-value=1.1e+02 Score=23.03 Aligned_cols=94 Identities=15% Similarity=0.201 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHHHhcCCCeEEEEeeeeCCCCCCCCCCCCCHHHHHHHHHHhCC----CceeccCCCCCceeEEEeC-CCC
Q psy5052 58 FNDDEILDFVLLTRDRPIDVRFIEYMPFSGNQWNNTKIMPFSEMLTKIKEAHP----DLLTLENAPNDTSKAYKVP-EFK 132 (172)
Q Consensus 58 ~N~~ei~~l~~~a~~~g~~~~~i~~~p~g~~~~~~~~~~~~~e~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~-~~~ 132 (172)
.|..++..|.+--++.|..+- ..|+... ..+++-+.+|+...+...+. -..+..+-+.++.+.|..- ...
T Consensus 51 ~~Y~~l~~L~~ky~~~Gl~IL---aFPCNQF--g~QEp~~n~Ei~~f~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~ 125 (171)
T KOG1651|consen 51 SQYTELNELYEKYKDQGLEIL---AFPCNQF--GNQEPGSNEEILNFVKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVK 125 (171)
T ss_pred hcchhHHHHHHHHhhCCeEEE---Eeccccc--cCcCCCCcHHHHHHHHhccCCCCccEeEEecCCCCCchHHHHHhhcC
Confidence 366788888888888886532 2366542 23355567788777776553 2333444344556666532 111
Q ss_pred ceEEEEcCCCCCcccCCCceeeccCCcEE
Q psy5052 133 GQVGFITSMTEHFCGTCNRLRLMADGSLK 161 (172)
Q Consensus 133 ~~~g~i~~~~~~~C~~c~~~~i~~~G~v~ 161 (172)
+ | ++....+++.....|++||.+.
T Consensus 126 ~--~---~lg~~IkWNF~KFLVd~~G~vv 149 (171)
T KOG1651|consen 126 G--G---PLGDDIKWNFTKFLVDKDGHVV 149 (171)
T ss_pred C--C---cccccceeeeEEEeECCCCcEE
Confidence 1 1 1222457777889999999874
No 411
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=31.56 E-value=83 Score=25.10 Aligned_cols=41 Identities=15% Similarity=0.375 Sum_probs=22.0
Q ss_pred HHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeE
Q psy5052 36 GIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDV 77 (172)
Q Consensus 36 ~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~ 77 (172)
-++.+++.|+..|.|+--.+. +..++..++++.+++.|..+
T Consensus 89 yl~~~k~lGf~~IEiSdGti~-l~~~~r~~~I~~~~~~Gf~v 129 (244)
T PF02679_consen 89 YLEECKELGFDAIEISDGTID-LPEEERLRLIRKAKEEGFKV 129 (244)
T ss_dssp HHHHHHHCT-SEEEE--SSS----HHHHHHHHHHHCCTTSEE
T ss_pred HHHHHHHcCCCEEEecCCcee-CCHHHHHHHHHHHHHCCCEE
Confidence 445566667765666654444 55666667777777777653
No 412
>cd00443 ADA_AMPD Adenosine/AMP deaminase. Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway.
Probab=31.54 E-value=1.2e+02 Score=24.65 Aligned_cols=68 Identities=15% Similarity=0.160 Sum_probs=41.5
Q ss_pred hcCCCeEEEeeeCCCHhhhc---cccCCCCHHHHHHHHHHHHH-cC-CCcEEEEEEEecCCCHH----HHHHHHHHHhcC
Q psy5052 3 KAGLDSINISLDTLKPDKYE---FITRRKGWSRVLAGIDLAVQ-LG-YDNLKVNVVVMKNFNDD----EILDFVLLTRDR 73 (172)
Q Consensus 3 ~aGl~~v~iSlds~~~e~~~---~i~g~~~~~~vl~~i~~~~~-~g-~~~v~in~v~~~g~N~~----ei~~l~~~a~~~ 73 (172)
+.|+..+-+..+- ..+. .+.....++.+.++++.+.+ .| + .+++-+.++|..+.+ ...++++++..+
T Consensus 57 ~d~V~Y~E~r~~p---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I-~~~lI~~~~R~~~~~~~~~~~~~~~~l~~~~ 132 (305)
T cd00443 57 EDNVQYLELRTTP---RLLETEKGLTKEQYWLLVIEGISEAKQWFPPI-KVRLILSVDRRGPYVQNYLVASEILELAKFL 132 (305)
T ss_pred HcCCEEEEEEcch---hhcCcccCCCHHHHHHHHHHHHHHHHHHcCCe-eEeEEEEEeCCCChhhhhhhHHHHHHHHHHh
Confidence 4566666565552 2221 12111246666777777764 34 6 678888888877776 777888888875
Q ss_pred C
Q psy5052 74 P 74 (172)
Q Consensus 74 g 74 (172)
.
T Consensus 133 ~ 133 (305)
T cd00443 133 S 133 (305)
T ss_pred c
Confidence 4
No 413
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.36 E-value=3e+02 Score=22.68 Aligned_cols=67 Identities=13% Similarity=0.125 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEecCCCHH---HHHHHHHHHhcCCCeEEEEeeeeCCCCCCCCCCCCCHHHHHHHHH
Q psy5052 30 WSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDD---EILDFVLLTRDRPIDVRFIEYMPFSGNQWNNTKIMPFSEMLTKIK 106 (172)
Q Consensus 30 ~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~---ei~~l~~~a~~~g~~~~~i~~~p~g~~~~~~~~~~~~~e~~~~l~ 106 (172)
.+++.+.++.+++.|+ .-++-+++.- -+.+ .+..-.+.|++.|+....+++ | +..+.+|+++.|+
T Consensus 17 ~~~lk~~i~~l~~~g~-~P~LaiI~vg-~d~as~~Yv~~k~k~a~~~Gi~~~~~~l-~---------~~~t~~~l~~~I~ 84 (301)
T PRK14194 17 LAQVREDVRTLKAAGI-EPALAVILVG-NDPASQVYVRNKILRAEEAGIRSLEHRL-P---------ADTSQARLLALIA 84 (301)
T ss_pred HHHHHHHHHHHHhCCC-CCeEEEEEeC-CChhHHHHHHHHHHHHHHcCCEEEEEEC-C---------CCCCHHHHHHHHH
Confidence 4566677777777787 4566665543 2332 366678888899988777665 1 2345566666666
Q ss_pred Hh
Q psy5052 107 EA 108 (172)
Q Consensus 107 ~~ 108 (172)
+.
T Consensus 85 ~l 86 (301)
T PRK14194 85 EL 86 (301)
T ss_pred HH
Confidence 54
No 414
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=31.28 E-value=2.7e+02 Score=22.20 Aligned_cols=73 Identities=12% Similarity=0.169 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEEEEeeeeCCCCCCCCCCCCCHHHHHHHHHHh
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRFIEYMPFSGNQWNNTKIMPFSEMLTKIKEA 108 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~~i~~~p~g~~~~~~~~~~~~~e~~~~l~~~ 108 (172)
.+++.-+-++.+++.|+..| ..+.+....+++..+.+.+. |. +..+..+.+.+. .........++++.+++.
T Consensus 127 p~ee~~~~~~~~~~~gl~~I---~lvap~t~~eri~~i~~~s~--gf-IY~vs~~GvTG~--~~~~~~~~~~~i~~vk~~ 198 (258)
T PRK13111 127 PPEEAEELRAAAKKHGLDLI---FLVAPTTTDERLKKIASHAS--GF-VYYVSRAGVTGA--RSADAADLAELVARLKAH 198 (258)
T ss_pred CHHHHHHHHHHHHHcCCcEE---EEeCCCCCHHHHHHHHHhCC--Cc-EEEEeCCCCCCc--ccCCCccHHHHHHHHHhc
Confidence 46777777777888887422 22234233456666665543 21 223334433222 222334566777777774
Q ss_pred C
Q psy5052 109 H 109 (172)
Q Consensus 109 ~ 109 (172)
.
T Consensus 199 ~ 199 (258)
T PRK13111 199 T 199 (258)
T ss_pred C
Confidence 3
No 415
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=31.27 E-value=1.7e+02 Score=25.54 Aligned_cols=48 Identities=15% Similarity=0.338 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEecCC-CHHHHHHHHHHHhcCCCeEEEE
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVVVMKNF-NDDEILDFVLLTRDRPIDVRFI 80 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v~~~g~-N~~ei~~l~~~a~~~g~~~~~i 80 (172)
.|+.+++.|+.|++ .|-+.+-+.+.- --.++.+.+.-+.+.||+|+++
T Consensus 127 ~~~~l~~~I~~Ak~----~I~l~~yi~~~d~~g~~i~~aL~~aa~rGV~VriL 175 (483)
T PRK01642 127 TFQAIIRDIELARH----YILMEFYIWRPDGLGDQVAEALIAAAKRGVRVRLL 175 (483)
T ss_pred HHHHHHHHHHHhhc----EEEEEEEEEccCCcHHHHHHHHHHHHHCCCEEEEE
Confidence 47888888888875 466666665421 1246666666666789999875
No 416
>PF08772 NOB1_Zn_bind: Nin one binding (NOB1) Zn-ribbon like; InterPro: IPR014881 This entry corresponds to a zinc ribbon and is found on the RNA binding protein NOB1. ; PDB: 2CON_A.
Probab=31.19 E-value=29 Score=22.31 Aligned_cols=31 Identities=29% Similarity=0.599 Sum_probs=9.2
Q ss_pred EEEcCCCCCcccCCC-------ceeeccCCcEEecCCC
Q psy5052 136 GFITSMTEHFCGTCN-------RLRLMADGSLKVCLFG 166 (172)
Q Consensus 136 g~i~~~~~~~C~~c~-------~~~i~~~G~v~pC~~~ 166 (172)
-+-.-.+..||..|. .+.|++||.+..-+-.
T Consensus 17 ~~t~~~~k~FCp~CGn~TL~rvsvsv~~~G~~~~~~~~ 54 (73)
T PF08772_consen 17 KITKDMTKQFCPKCGNATLKRVSVSVDEDGKIKLHLKK 54 (73)
T ss_dssp -EES-SS--S-SSS--S--EEEE-B--SS---B-----
T ss_pred cCcCCCCceeCcccCCCcceEEEEEECCCCCEEEEecC
Confidence 333444567999885 2567889988765543
No 417
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=31.17 E-value=2.9e+02 Score=22.55 Aligned_cols=73 Identities=11% Similarity=0.150 Sum_probs=50.7
Q ss_pred HHHHHHHHHc--CCCcEEEEEEEe---c-------CCCHHHHHHHHHHHhcCCCeEEEEeeeeCCCCCCC-CCCCCCHHH
Q psy5052 34 LAGIDLAVQL--GYDNLKVNVVVM---K-------NFNDDEILDFVLLTRDRPIDVRFIEYMPFSGNQWN-NTKIMPFSE 100 (172)
Q Consensus 34 l~~i~~~~~~--g~~~v~in~v~~---~-------g~N~~ei~~l~~~a~~~g~~~~~i~~~p~g~~~~~-~~~~~~~~e 100 (172)
+.+|..+++. ++ +|-+-.+=- + |=+.+-++.|.+-|...|++--|+|.-|-+...|. .++.++.++
T Consensus 179 ~~~ip~mk~~~t~l-PVi~DpSHsvq~p~~~g~~s~G~re~v~~larAAvA~GaDGl~iEvHpdP~~AlsDg~q~l~~~~ 257 (281)
T PRK12457 179 MLGFRQMKRTTGDL-PVIFDVTHSLQCRDPLGAASGGRRRQVLDLARAGMAVGLAGLFLEAHPDPDRARCDGPSALPLDQ 257 (281)
T ss_pred hHHHHHHHhhCCCC-CEEEeCCccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCEEEEEecCCccccCCCcccccCHHH
Confidence 4677777875 88 777764321 1 11334588888888889999999999888765443 356788888
Q ss_pred HHHHHHH
Q psy5052 101 MLTKIKE 107 (172)
Q Consensus 101 ~~~~l~~ 107 (172)
+.+.+++
T Consensus 258 ~~~l~~~ 264 (281)
T PRK12457 258 LEPFLSQ 264 (281)
T ss_pred HHHHHHH
Confidence 7666554
No 418
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.16 E-value=3e+02 Score=22.57 Aligned_cols=67 Identities=13% Similarity=0.156 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHc-CCCcEEEEEEEecCCCHH---HHHHHHHHHhcCCCeEEEEeeeeCCCCCCCCCCCCCHHHHHHHH
Q psy5052 30 WSRVLAGIDLAVQL-GYDNLKVNVVVMKNFNDD---EILDFVLLTRDRPIDVRFIEYMPFSGNQWNNTKIMPFSEMLTKI 105 (172)
Q Consensus 30 ~~~vl~~i~~~~~~-g~~~v~in~v~~~g~N~~---ei~~l~~~a~~~g~~~~~i~~~p~g~~~~~~~~~~~~~e~~~~l 105 (172)
.+++.+-++.+++. |+ .-++-+++.- -+.+ .+..-.+.|++.|+....+++ ++..+.+++++.|
T Consensus 15 ~~~lk~~v~~l~~~~g~-~P~LaiI~vg-~d~as~~Yv~~k~k~a~~~Gi~~~~~~l----------~~~~~~~~l~~~I 82 (288)
T PRK14171 15 LADLKLEIQELKSQTNA-SPKLAIVLVG-DNPASIIYVKNKIKNAHKIGIDTLLVNL----------STTIHTNDLISKI 82 (288)
T ss_pred HHHHHHHHHHHHhccCC-CCeEEEEEeC-CCccHHHHHHHHHHHHHHcCCEEEEEEC----------CCCCCHHHHHHHH
Confidence 45566667777665 77 4566655543 2322 356788889999998777665 1234566777777
Q ss_pred HHh
Q psy5052 106 KEA 108 (172)
Q Consensus 106 ~~~ 108 (172)
++.
T Consensus 83 ~~L 85 (288)
T PRK14171 83 NEL 85 (288)
T ss_pred HHH
Confidence 664
No 419
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=31.12 E-value=2.8e+02 Score=22.34 Aligned_cols=73 Identities=15% Similarity=0.181 Sum_probs=48.4
Q ss_pred HHHHHHHHHcCCCcEEEEEEEe---c-------CCCHHHHHHHHHHHhcCCCeEEEEeeeeCCCCCCC-CCCCCCHHHHH
Q psy5052 34 LAGIDLAVQLGYDNLKVNVVVM---K-------NFNDDEILDFVLLTRDRPIDVRFIEYMPFSGNQWN-NTKIMPFSEML 102 (172)
Q Consensus 34 l~~i~~~~~~g~~~v~in~v~~---~-------g~N~~ei~~l~~~a~~~g~~~~~i~~~p~g~~~~~-~~~~~~~~e~~ 102 (172)
++++-.+++.++ ||-+-.+=- + +=+.+-++.+.+-|...|++--|+|.-|-+...|. .++.++.+++.
T Consensus 165 ~~~ip~~k~~~~-PVi~DpSHsvq~pg~~g~~s~G~r~~v~~la~AAvA~GaDGl~iEvHpdP~~AlsDg~q~l~~~~~~ 243 (258)
T TIGR01362 165 MRSLPIMRELGC-PVIFDATHSVQQPGGLGGASGGLREFVPTLARAAVAVGIDGLFMETHPDPKNAKSDGPNMLPLSELE 243 (258)
T ss_pred hhhhHHHHhcCC-CEEEeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCEEEEEeCCCccccCCCccccCCHHHHH
Confidence 456666676677 777664321 1 11334477888888889999899998888765443 35678888876
Q ss_pred HHHHH
Q psy5052 103 TKIKE 107 (172)
Q Consensus 103 ~~l~~ 107 (172)
+.+++
T Consensus 244 ~ll~~ 248 (258)
T TIGR01362 244 GLLEK 248 (258)
T ss_pred HHHHH
Confidence 66654
No 420
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=31.07 E-value=2e+02 Score=20.51 Aligned_cols=36 Identities=11% Similarity=0.088 Sum_probs=19.6
Q ss_pred HHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCC
Q psy5052 38 DLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPI 75 (172)
Q Consensus 38 ~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~ 75 (172)
+++.+.+-.-|.++..+. .....+.++++..++.|.
T Consensus 44 ~aa~~~~adiVglS~L~t--~~~~~~~~~~~~l~~~gl 79 (128)
T cd02072 44 DAAIETDADAILVSSLYG--HGEIDCKGLREKCDEAGL 79 (128)
T ss_pred HHHHHcCCCEEEEecccc--CCHHHHHHHHHHHHHCCC
Confidence 344444432244443332 456667777777777766
No 421
>TIGR00506 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal.
Probab=30.97 E-value=1.4e+02 Score=23.08 Aligned_cols=16 Identities=31% Similarity=0.231 Sum_probs=8.5
Q ss_pred cCCCCHHHHHHHHHHHH
Q psy5052 25 TRRKGWSRVLAGIDLAV 41 (172)
Q Consensus 25 ~g~~~~~~vl~~i~~~~ 41 (172)
+|-.+.+++. .|+.+.
T Consensus 97 TGISa~DRa~-Tir~~a 112 (199)
T TIGR00506 97 TGISANDRAL-TIRAAL 112 (199)
T ss_pred CCcCHHHHHH-HHHHHh
Confidence 5555566554 366444
No 422
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=30.89 E-value=2.9e+02 Score=22.70 Aligned_cols=49 Identities=18% Similarity=0.293 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEE----------Ee-----cC-----CCHHHHHHHHHHHhcCCCeE
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVV----------VM-----KN-----FNDDEILDFVLLTRDRPIDV 77 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v----------~~-----~g-----~N~~ei~~l~~~a~~~g~~~ 77 (172)
+.+.+.+-|+.+...++..+.+..+ -. +| .+.+|+.+++++|+.+|+.|
T Consensus 16 ~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~rgI~v 84 (311)
T cd06570 16 PVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDRGIRV 84 (311)
T ss_pred CHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCHHHHHHHHHHHHHcCCEE
Confidence 5777777777777666532333221 00 11 45679999999999999864
No 423
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=30.86 E-value=2.9e+02 Score=22.37 Aligned_cols=73 Identities=11% Similarity=0.168 Sum_probs=48.1
Q ss_pred HHHHHHHHHcCCCcEEEEEEEe---c-------CCCHHHHHHHHHHHhcCCCeEEEEeeeeCCCCCCC-CCCCCCHHHHH
Q psy5052 34 LAGIDLAVQLGYDNLKVNVVVM---K-------NFNDDEILDFVLLTRDRPIDVRFIEYMPFSGNQWN-NTKIMPFSEML 102 (172)
Q Consensus 34 l~~i~~~~~~g~~~v~in~v~~---~-------g~N~~ei~~l~~~a~~~g~~~~~i~~~p~g~~~~~-~~~~~~~~e~~ 102 (172)
++++-.+++.++ ||-+-.+=- + +=+.+-++.+.+-|...|++--|+|.-|.+...|. ..+.++.+++.
T Consensus 173 ~~~vp~~k~~~l-PVi~DpSHsvq~pg~~~~~s~G~r~~v~~la~AAvA~GadGl~iEvHpdP~~AlsDg~q~l~~~~~~ 251 (264)
T PRK05198 173 MRGLPIMRETGA-PVIFDATHSVQLPGGQGGSSGGQREFVPVLARAAVAVGVAGLFIETHPDPDNALSDGPNMLPLDKLE 251 (264)
T ss_pred hhhhHHHhhCCC-CEEEeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHcCCCEEEEEeCCCccccCCCccccCCHHHHH
Confidence 455666666776 666653221 1 11334577888888889999899999888765443 35678888877
Q ss_pred HHHHH
Q psy5052 103 TKIKE 107 (172)
Q Consensus 103 ~~l~~ 107 (172)
+.+++
T Consensus 252 ~ll~~ 256 (264)
T PRK05198 252 PLLEQ 256 (264)
T ss_pred HHHHH
Confidence 66654
No 424
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=30.79 E-value=1.3e+02 Score=25.97 Aligned_cols=79 Identities=22% Similarity=0.444 Sum_probs=47.8
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccc---c---C------CCCHHHHHH-HHHHHHHcCCCcEEEEEEEec-------CCCH
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFI---T---R------RKGWSRVLA-GIDLAVQLGYDNLKVNVVVMK-------NFND 60 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i---~---g------~~~~~~vl~-~i~~~~~~g~~~v~in~v~~~-------g~N~ 60 (172)
|-++|++.|-+..-+.++..++.+ . + .-++.+..+ .++++.++|...|.+-.-.-. +.+.
T Consensus 33 Ld~lGv~~IE~g~p~~s~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~~~~i~if~~tSd~h~~~~~~~t~ 112 (409)
T COG0119 33 LDDLGVDYIEAGFPVASPGDFEFVRAIAEKAGLFICALIAALARAIKRDIEALLEAGVDRIHIFIATSDLHLRYKLKKTR 112 (409)
T ss_pred HHHcCCCEEEEeCCcCChhhHHHHHHHHHhcCcccchhhhhhHHhHHhhHHHHHhCCCCEEEEEEcCCHHHHHHHhCCCH
Confidence 457899999988888777544433 2 0 013444454 999999998743322211000 0111
Q ss_pred H----HHHHHHHHHhcCCCeEEE
Q psy5052 61 D----EILDFVLLTRDRPIDVRF 79 (172)
Q Consensus 61 ~----ei~~l~~~a~~~g~~~~~ 79 (172)
. -+.+.+++|+++|+.+++
T Consensus 113 ~e~l~~~~~~v~ya~~~g~~~~~ 135 (409)
T COG0119 113 EEVLERAVDAVEYARDHGLEVRF 135 (409)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEE
Confidence 2 266789999999987766
No 425
>PRK01060 endonuclease IV; Provisional
Probab=30.71 E-value=2.6e+02 Score=21.96 Aligned_cols=70 Identities=9% Similarity=0.084 Sum_probs=37.4
Q ss_pred hhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHH-HHHcCCCc---EEEEEE--EecCC-CH-------HHHHHHH
Q psy5052 2 KKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDL-AVQLGYDN---LKVNVV--VMKNF-ND-------DEILDFV 67 (172)
Q Consensus 2 ~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~-~~~~g~~~---v~in~v--~~~g~-N~-------~ei~~l~ 67 (172)
+++|.+.|.+.+.+... +. ....+-+. ++.++. +.+.|+ . +.+... +.-.. +. +.+.+.+
T Consensus 22 ~~~G~d~vEl~~~~p~~--~~--~~~~~~~~-~~~lk~~~~~~gl-~~~~~~~h~~~~~nl~~~d~~~r~~s~~~~~~~i 95 (281)
T PRK01060 22 AEIGANAFMIFTGNPQQ--WK--RKPLEELN-IEAFKAACEKYGI-SPEDILVHAPYLINLGNPNKEILEKSRDFLIQEI 95 (281)
T ss_pred HHcCCCEEEEECCCCCC--Cc--CCCCCHHH-HHHHHHHHHHcCC-CCCceEEecceEecCCCCCHHHHHHHHHHHHHHH
Confidence 67899999998875421 11 11112333 333443 446777 4 333211 11111 11 2477788
Q ss_pred HHHhcCCCeE
Q psy5052 68 LLTRDRPIDV 77 (172)
Q Consensus 68 ~~a~~~g~~~ 77 (172)
++|+++|+..
T Consensus 96 ~~A~~lga~~ 105 (281)
T PRK01060 96 ERCAALGAKL 105 (281)
T ss_pred HHHHHcCCCE
Confidence 8999999873
No 426
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=30.64 E-value=1.6e+02 Score=23.50 Aligned_cols=52 Identities=15% Similarity=0.238 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEecCC--CHHHHHHHHHHH-----------hcCCCeEEEE
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVVVMKNF--NDDEILDFVLLT-----------RDRPIDVRFI 80 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v~~~g~--N~~ei~~l~~~a-----------~~~g~~~~~i 80 (172)
+++.+.+-++.+.+.|++.|++-.-=+.++ +.+|+..|+++. .+.|+.++++
T Consensus 49 G~~~l~~i~~~c~~~GI~~vT~yaFS~eN~kR~~~Ev~~Lm~L~~~~l~~~~~~~~~~~iri~~i 113 (249)
T PRK14831 49 GVDALKDLLRCCKDWGIGALTAYAFSTENWSRPLEEVNFLMTLFERVLRRELEELMEENVRIRFV 113 (249)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeecchhhhCcCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEE
Confidence 588999999999999996455432211212 234666665553 4578888876
No 427
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=30.56 E-value=3.3e+02 Score=22.97 Aligned_cols=66 Identities=11% Similarity=0.019 Sum_probs=33.1
Q ss_pred cCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCH---H-------HHHHHHHHHhcC
Q psy5052 4 AGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFND---D-------EILDFVLLTRDR 73 (172)
Q Consensus 4 aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~---~-------ei~~l~~~a~~~ 73 (172)
.|-+.|.+.+.--++..++ .++.+-+.++.+.+.|+ ++-+ ++.-||.+. + -+.-..+.|.++
T Consensus 158 LGAdAV~~tvy~Gs~~E~~------ml~~l~~i~~ea~~~Gl-Plv~-~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaEL 229 (348)
T PRK09250 158 LGAVAVGATIYFGSEESRR------QIEEISEAFEEAHELGL-ATVL-WSYLRNSAFKKDGDYHTAADLTGQANHLAATI 229 (348)
T ss_pred CCCCEEEEEEecCCHHHHH------HHHHHHHHHHHHHHhCC-CEEE-EecccCcccCCcccccccHHHHHHHHHHHHHH
Confidence 3444455444443333222 25556666677777787 5544 334455331 1 133344455567
Q ss_pred CCeE
Q psy5052 74 PIDV 77 (172)
Q Consensus 74 g~~~ 77 (172)
|+++
T Consensus 230 GADI 233 (348)
T PRK09250 230 GADI 233 (348)
T ss_pred cCCE
Confidence 7763
No 428
>KOG3603|consensus
Probab=30.46 E-value=1.5e+02 Score=25.73 Aligned_cols=73 Identities=22% Similarity=0.241 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHHHHHcCCCcEEEE-----EEEecCCCHHHHHHHHHHHhcCCCeEEEEeeeeCCCCCCCCCCCCCHHHHH
Q psy5052 28 KGWSRVLAGIDLAVQLGYDNLKVN-----VVVMKNFNDDEILDFVLLTRDRPIDVRFIEYMPFSGNQWNNTKIMPFSEML 102 (172)
Q Consensus 28 ~~~~~vl~~i~~~~~~g~~~v~in-----~v~~~g~N~~ei~~l~~~a~~~g~~~~~i~~~p~g~~~~~~~~~~~~~e~~ 102 (172)
.+++.+++.|..|++. + .+.|. +.-.+..+.-+|.+-++-|.-+||.||+.- + .|.. ...++-.++
T Consensus 276 ~DL~ail~~i~~A~~f-v-~isVMdY~Ps~~y~k~~~fw~iDdaiR~aa~RgV~vR~lv----s--~~~~-~~~~m~~~L 346 (456)
T KOG3603|consen 276 WDLEAILNTIDEAQKF-V-YISVMDYFPSTIYSKNHRFWEIDDAIRRAAVRGVKVRLLV----S--CWKH-SEPSMFRFL 346 (456)
T ss_pred hhHHHHHHHHHHHhhh-e-eeeehhccchheeecCcchhhhhHHHHHHhhcceEEEEEE----e--ccCC-CCchHHHHH
Confidence 4799999999999875 2 34433 222333445589999999988999998751 1 2322 223445566
Q ss_pred HHHHHhC
Q psy5052 103 TKIKEAH 109 (172)
Q Consensus 103 ~~l~~~~ 109 (172)
..|+...
T Consensus 347 ~SLq~l~ 353 (456)
T KOG3603|consen 347 RSLQDLS 353 (456)
T ss_pred HHHHHhc
Confidence 6666544
No 429
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=30.41 E-value=1.4e+02 Score=18.67 Aligned_cols=41 Identities=20% Similarity=0.262 Sum_probs=24.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhc
Q psy5052 27 RKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRD 72 (172)
Q Consensus 27 ~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~ 72 (172)
+..|+.+.+..+.+++ |- .|-+|+ ...+.++...+++|++.
T Consensus 6 p~~~~D~~~i~~~l~~-g~-~Vivnl---~~l~~~~~~Ri~Dfl~G 46 (73)
T PF04472_consen 6 PKSFEDAREIVDALRE-GK-IVIVNL---ENLDDEEAQRILDFLSG 46 (73)
T ss_dssp -SSGGGHHHHHHHHHT-T---EEEE----TTS-HHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHc-CC-EEEEEC---CCCCHHHHHHHHHHHhc
Confidence 4467887775555554 54 577774 33667778888888764
No 430
>PLN02231 alanine transaminase
Probab=30.29 E-value=2.9e+02 Score=24.53 Aligned_cols=49 Identities=16% Similarity=0.149 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEecCCC-------HHHHHHHHHHHhcCCCeEEE
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVVVMKNFN-------DDEILDFVLLTRDRPIDVRF 79 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N-------~~ei~~l~~~a~~~g~~~~~ 79 (172)
+++.+.+.++.....|. ++++-++..+ .| .+++.+++++|++.++-+-.
T Consensus 254 d~~~Le~~l~~~~~~~~-~~k~ivl~nP-~NPTG~vls~e~l~~Iv~~a~~~~l~lI~ 309 (534)
T PLN02231 254 EISELKKQLEDARSKGI-TVRALVVINP-GNPTGQVLAEENQRDIVEFCKQEGLVLLA 309 (534)
T ss_pred CHHHHHHHHHHHhhcCC-CeEEEEEeCC-CCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 46777677766666665 5666555555 34 35788999999988875433
No 431
>PRK00915 2-isopropylmalate synthase; Validated
Probab=30.24 E-value=1.2e+02 Score=26.85 Aligned_cols=79 Identities=15% Similarity=0.242 Sum_probs=42.3
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccC-----CC---------CHHHHHHHHHHHHHcCCCcEEEEEEEec-------CCC
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITR-----RK---------GWSRVLAGIDLAVQLGYDNLKVNVVVMK-------NFN 59 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g-----~~---------~~~~vl~~i~~~~~~g~~~v~in~v~~~-------g~N 59 (172)
|.++|++.|-+..-+.+|.-++.++. .+ .-+.+-.+++.+.++|...|.+-..... +.+
T Consensus 35 L~~~Gv~~IE~G~p~~s~~d~~~v~~i~~~~~~~~i~a~~r~~~~did~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s 114 (513)
T PRK00915 35 LERLGVDVIEAGFPASSPGDFEAVKRIARTVKNSTVCGLARAVKKDIDAAAEALKPAEAPRIHTFIATSPIHMEYKLKMS 114 (513)
T ss_pred HHHcCCCEEEEcCCCCChHHHHHHHHHHhhCCCCEEEEEccCCHHHHHHHHHHhhcCCCCEEEEEECCcHHHHHHHhCCC
Confidence 46789999999887776644443311 11 1223333333333666532333221100 112
Q ss_pred HH----HHHHHHHHHhcCCCeEEE
Q psy5052 60 DD----EILDFVLLTRDRPIDVRF 79 (172)
Q Consensus 60 ~~----ei~~l~~~a~~~g~~~~~ 79 (172)
.+ .+.+.+++|+++|..+.|
T Consensus 115 ~~e~l~~~~~~v~~ak~~g~~v~f 138 (513)
T PRK00915 115 REEVLEMAVEAVKYARSYTDDVEF 138 (513)
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEE
Confidence 22 356899999999988754
No 432
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=30.06 E-value=2.7e+02 Score=22.97 Aligned_cols=20 Identities=25% Similarity=0.512 Sum_probs=17.2
Q ss_pred CCHHHHHHHHHHHhcCCCeE
Q psy5052 58 FNDDEILDFVLLTRDRPIDV 77 (172)
Q Consensus 58 ~N~~ei~~l~~~a~~~g~~~ 77 (172)
.+.+|+.+|+++|+++|+.|
T Consensus 72 YT~~di~elv~yA~~rgI~v 91 (329)
T cd06568 72 YTQEDYKDIVAYAAERHITV 91 (329)
T ss_pred CCHHHHHHHHHHHHHcCCEE
Confidence 36689999999999999874
No 433
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=30.05 E-value=3e+02 Score=22.31 Aligned_cols=81 Identities=14% Similarity=0.138 Sum_probs=45.5
Q ss_pred HHHHHHHHHHH-HcCCCcEEEEEEEec-CCCHHHHHHHHHHHhcCCCeEEEEeeeeCCCCC--CCCCCCCCHHHHHHHHH
Q psy5052 31 SRVLAGIDLAV-QLGYDNLKVNVVVMK-NFNDDEILDFVLLTRDRPIDVRFIEYMPFSGNQ--WNNTKIMPFSEMLTKIK 106 (172)
Q Consensus 31 ~~vl~~i~~~~-~~g~~~v~in~v~~~-g~N~~ei~~l~~~a~~~g~~~~~i~~~p~g~~~--~~~~~~~~~~e~~~~l~ 106 (172)
+.+.+-++++. +.|+.-+++.-+..- --|+..+..+.+.|+++|+.+.+ .+|.+. +.....-+..-+++-+-
T Consensus 112 ~~a~~E~er~v~~~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~i----htG~~~~~~~~~~~~~~p~~~~~va 187 (293)
T COG2159 112 EAAAEELERRVRELGFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVI----HTGAGPGGAGLEKGHSDPLYLDDVA 187 (293)
T ss_pred HHHHHHHHHHHHhcCceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEE----EeCCCCCCcccccCCCCchHHHHHH
Confidence 54555555555 567744666544442 13667789999999999998777 344321 21111112222345555
Q ss_pred HhCCCceec
Q psy5052 107 EAHPDLLTL 115 (172)
Q Consensus 107 ~~~~~~~~~ 115 (172)
.++|+++-.
T Consensus 188 ~~fP~l~IV 196 (293)
T COG2159 188 RKFPELKIV 196 (293)
T ss_pred HHCCCCcEE
Confidence 567765543
No 434
>KOG4355|consensus
Probab=30.05 E-value=3.7e+02 Score=23.37 Aligned_cols=76 Identities=12% Similarity=0.238 Sum_probs=48.4
Q ss_pred EEEeeeCCCHhhhccccCC---CCHHHHHHHHHHHHHcCCCcEEEEEEEe---cCCCHHHHHHHHHHHhcCCCeEEEE-e
Q psy5052 9 INISLDTLKPDKYEFITRR---KGWSRVLAGIDLAVQLGYDNLKVNVVVM---KNFNDDEILDFVLLTRDRPIDVRFI-E 81 (172)
Q Consensus 9 v~iSlds~~~e~~~~i~g~---~~~~~vl~~i~~~~~~g~~~v~in~v~~---~g~N~~ei~~l~~~a~~~g~~~~~i-~ 81 (172)
+++-+.|.+..+--++.+. ..|+.|.+-+. +. .+-+.|.|-++ +|.+++|.++-++++++....--|| .
T Consensus 301 lhvpvqsgsdsvl~emkreyc~~dfk~Vvd~Lt---er-VPgi~IATDiIcgFPtETdeDFeeTmeLv~kYKFPslfInQ 376 (547)
T KOG4355|consen 301 LHVPVQSGSDSVLTEMKREYCNFDFKIVVDFLT---ER-VPGITIATDIICGFPTETDEDFEETMELVRKYKFPSLFINQ 376 (547)
T ss_pred EecccccCchhHHHHHHHHHhhhhHHHHHHHHH---hh-CCCcEEeeeeeecCCCCchHHHHHHHHHHHHccCchhhhhh
Confidence 3455666666555444332 25777766543 32 22356665443 6678899999999999998865566 4
Q ss_pred eeeCCCC
Q psy5052 82 YMPFSGN 88 (172)
Q Consensus 82 ~~p~g~~ 88 (172)
|.|-.+.
T Consensus 377 fyPRpGT 383 (547)
T KOG4355|consen 377 FYPRPGT 383 (547)
T ss_pred cCCCCCC
Confidence 6676654
No 435
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=30.02 E-value=3.1e+02 Score=22.43 Aligned_cols=47 Identities=13% Similarity=0.166 Sum_probs=31.7
Q ss_pred HHHHHHHHHcCCC-cEEEE--E--------EEecCCCHHHHHHHHHHHhcCCCeEEEE
Q psy5052 34 LAGIDLAVQLGYD-NLKVN--V--------VVMKNFNDDEILDFVLLTRDRPIDVRFI 80 (172)
Q Consensus 34 l~~i~~~~~~g~~-~v~in--~--------v~~~g~N~~ei~~l~~~a~~~g~~~~~i 80 (172)
-+-++.++++|.. .|.+- + .+.||++.+++.+.++.+++.|+.+...
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg~t~~~~~~ai~~~~~~Gi~v~~~ 174 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETANDRIREKSINKGSTFEDFIRAAELARKYGAGVKAY 174 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCCCCHHHHHHHHHHHHHcCCcEEEE
Confidence 3556667778873 23332 2 2456777778889999999999986543
No 436
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=29.93 E-value=3.2e+02 Score=22.64 Aligned_cols=44 Identities=14% Similarity=0.142 Sum_probs=30.5
Q ss_pred HHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEEEE
Q psy5052 34 LAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRFI 80 (172)
Q Consensus 34 l~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~~i 80 (172)
.+.++.+.+.|+..|.|-+.. ...+.+.+.+++++++|..+.+.
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~---~e~d~~~~~i~~ak~~G~~v~~~ 133 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHC---TEADVSEQHIGMARELGMDTVGF 133 (333)
T ss_pred HHHHHHHHHCCCCEEEEEecc---chHHHHHHHHHHHHHcCCeEEEE
Confidence 467888888898545544322 12346788999999999886543
No 437
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=29.90 E-value=2.5e+02 Score=22.69 Aligned_cols=52 Identities=13% Similarity=0.259 Sum_probs=35.6
Q ss_pred CCHH--HHHHHHHHHhcCCC-eEE-EEeeeeCCCCC--CCCCCCCCHHHHHHHHHHhC
Q psy5052 58 FNDD--EILDFVLLTRDRPI-DVR-FIEYMPFSGNQ--WNNTKIMPFSEMLTKIKEAH 109 (172)
Q Consensus 58 ~N~~--ei~~l~~~a~~~g~-~~~-~i~~~p~g~~~--~~~~~~~~~~e~~~~l~~~~ 109 (172)
.|++ |+.-+++-+++.|+ .+. .++|+|+.+.. ....+.++.+-+-+.|+...
T Consensus 58 ~~d~l~ell~~~~alr~~ga~~i~~v~PY~~YaRqDr~~~~ge~isak~~a~ll~~~~ 115 (285)
T PRK00934 58 QDENLVELLLLIDALRDEGAKSITLVIPYLGYARQDKRFKPGEPISARAIAKIISAYY 115 (285)
T ss_pred CcHHHHHHHHHHHHHHHcCCCeEEEEecCCcccccccccCCCCCccHHHHHHHHHHhc
Confidence 4554 66677888888888 453 46889998743 33346788887777777643
No 438
>PRK01792 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=29.90 E-value=1.5e+02 Score=23.23 Aligned_cols=29 Identities=21% Similarity=0.286 Sum_probs=14.9
Q ss_pred eEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHH
Q psy5052 8 SINISLDTLKPDKYEFITRRKGWSRVLAGIDLAV 41 (172)
Q Consensus 8 ~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~ 41 (172)
.+.||+|... ..-+|-.+.+++. .|+.+.
T Consensus 94 aFtvsVda~~----g~~TGISA~DRa~-Tir~la 122 (214)
T PRK01792 94 AFTVTIEAAK----GVSTGVSAADRVT-TIQAAI 122 (214)
T ss_pred CEEEEEecCC----CCCCCcCHHHHHH-HHHHHh
Confidence 4678888531 1224444556543 355554
No 439
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=29.75 E-value=64 Score=23.08 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeeeeCCC
Q psy5052 60 DDEILDFVLLTRDRPIDVRFIEYMPFSG 87 (172)
Q Consensus 60 ~~ei~~l~~~a~~~g~~~~~i~~~p~g~ 87 (172)
.+|++-+++.+++.|+++.|+ ..|+.+
T Consensus 35 y~Dl~l~L~~~k~~g~~~lfV-i~PvNg 61 (130)
T PF04914_consen 35 YDDLQLLLDVCKELGIDVLFV-IQPVNG 61 (130)
T ss_dssp HHHHHHHHHHHHHTT-EEEEE-E----H
T ss_pred HHHHHHHHHHHHHcCCceEEE-ecCCcH
Confidence 457888999999999998876 457754
No 440
>PF02762 Cbl_N3: CBL proto-oncogene N-terminus, SH2-like domain; InterPro: IPR014742 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the SH2-like domain.; PDB: 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B 3BUW_B ....
Probab=29.53 E-value=1.7e+02 Score=19.19 Aligned_cols=15 Identities=7% Similarity=0.401 Sum_probs=10.2
Q ss_pred CCCCHHHHHHHHHHh
Q psy5052 94 KIMPFSEMLTKIKEA 108 (172)
Q Consensus 94 ~~~~~~e~~~~l~~~ 108 (172)
.+++.+|+.++|+..
T Consensus 7 AFlTYdevk~~L~~~ 21 (86)
T PF02762_consen 7 AFLTYDEVKARLQHY 21 (86)
T ss_dssp TT--HHHHHHHHGGG
T ss_pred EEEeHHHHHHHHHHH
Confidence 478999998888763
No 441
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=29.51 E-value=1.7e+02 Score=24.77 Aligned_cols=55 Identities=9% Similarity=-0.063 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHHH-HcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEEEEeeeeCC
Q psy5052 29 GWSRVLAGIDLAV-QLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRFIEYMPFS 86 (172)
Q Consensus 29 ~~~~vl~~i~~~~-~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~~i~~~p~g 86 (172)
..+.+.++++++. +.|- ++-+-.-+. +. .+|+.+-.+++++.|+..-.+.++.+|
T Consensus 175 Rv~~v~~av~~a~~eTG~-~~~y~~Nit-a~-~~em~~ra~~a~~~Ga~~vMv~~~~~G 230 (364)
T cd08210 175 RVKACQEAVAEANAETGG-RTLYAPNVT-GP-PTQLLERARFAKEAGAGGVLIAPGLTG 230 (364)
T ss_pred HHHHHHHHHHHHHhhcCC-cceEEEecC-CC-HHHHHHHHHHHHHcCCCEEEeecccch
Confidence 3667777777776 4563 333322222 23 458999999999999876555555554
No 442
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional
Probab=29.51 E-value=2.2e+02 Score=22.79 Aligned_cols=52 Identities=17% Similarity=0.239 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEecCCC--HHHHHHHHHHH-----------hcCCCeEEEE
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVVVMKNFN--DDEILDFVLLT-----------RDRPIDVRFI 80 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N--~~ei~~l~~~a-----------~~~g~~~~~i 80 (172)
+++.+.+.++.+.+.|++.+++=.-=+.+.+ .+|+..|+++. .+.|+.++++
T Consensus 47 G~~~l~~i~~~c~~~gI~~lTvyaFS~EN~~Rp~~EV~~Lm~L~~~~l~~~~~~~~~~~irv~~i 111 (253)
T PRK14832 47 GARTLKELLRCCKDWGIKALTAYAFSTENWQRPIEEVDFLMLLFERLLRRELAQMHREGVRISFI 111 (253)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 5888999999999999964554432222222 34776655553 3467777776
No 443
>PRK05474 xylose isomerase; Provisional
Probab=29.50 E-value=3.8e+02 Score=23.36 Aligned_cols=73 Identities=18% Similarity=0.121 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEecCC---------CHH-H-------HHHHHHHHhcCCCeEEE-EeeeeCCCCCC
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVVVMKNF---------NDD-E-------ILDFVLLTRDRPIDVRF-IEYMPFSGNQW 90 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v~~~g~---------N~~-e-------i~~l~~~a~~~g~~~~~-i~~~p~g~~~~ 90 (172)
+.++|.++|+.+++.|-. |+|+..|. +.. + +..+++++.+.|.+.+| ||+-|....+.
T Consensus 164 A~~qvk~alD~~~eLGge----~yV~WgGREGye~~~ntD~~~e~d~~~~~l~~v~dYa~~iGf~~~f~IEPKP~EPr~h 239 (437)
T PRK05474 164 AAAQVKTALDATKRLGGE----NYVFWGGREGYETLLNTDLKREREQLARFLQMVVDYKHKIGFKGTFLIEPKPQEPTKH 239 (437)
T ss_pred HHHHHHHHHHHHHHhCCC----eEEECCCcccccchhhcCHHHHHHHHHHHHHHHHHHhhhcCCCceEEeccCCCCCCCc
Confidence 578999999999998863 44444331 111 1 33346667788887654 67777654322
Q ss_pred CCCCCCCHHHHHHHHHH
Q psy5052 91 NNTKIMPFSEMLTKIKE 107 (172)
Q Consensus 91 ~~~~~~~~~e~~~~l~~ 107 (172)
....+....+..|++
T Consensus 240 --qyd~d~at~l~fl~~ 254 (437)
T PRK05474 240 --QYDYDAATVYGFLKQ 254 (437)
T ss_pred --cccccHHHHHHHHHH
Confidence 233456666666665
No 444
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=29.48 E-value=1.3e+02 Score=25.55 Aligned_cols=80 Identities=14% Similarity=0.109 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhc-CCCeEEEEeeeeCCCCCCCCCCCCCHHHHHHHHHH
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRD-RPIDVRFIEYMPFSGNQWNNTKIMPFSEMLTKIKE 107 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~-~g~~~~~i~~~p~g~~~~~~~~~~~~~e~~~~l~~ 107 (172)
+.+++++-++.+.+.|++.|-+..=..+..+.+-..++++..++ .. ++...-+-|..-..-.....++.+|.++.|++
T Consensus 91 s~eeI~~~~~~~~~~G~~Evli~gG~~p~~~~~y~~~~~~~ik~~~p-~~~i~a~s~~ei~~~~~~~~~s~~E~l~~Lk~ 169 (370)
T COG1060 91 SPEEILEEVREAVKRGITEVLIVGGEHPELSLEYYEELFRTIKEEFP-DLHIHALSAGEILFLAREGGLSYEEVLKRLKE 169 (370)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEecCcCCCcchHHHHHHHHHHHHhCc-chhhcccCHHHhHHHHhccCCCHHHHHHHHHH
Confidence 68999999999999999767776666665555556677777775 22 32222222211100111235678887788776
Q ss_pred hC
Q psy5052 108 AH 109 (172)
Q Consensus 108 ~~ 109 (172)
..
T Consensus 170 aG 171 (370)
T COG1060 170 AG 171 (370)
T ss_pred cC
Confidence 53
No 445
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=29.44 E-value=1.1e+02 Score=27.24 Aligned_cols=54 Identities=17% Similarity=0.151 Sum_probs=36.3
Q ss_pred ChhcCCCeEEEeeeCC--------CHhhhccccC-CCCHHHHHHHHHHHHHcCCCcEEEEEEEe
Q psy5052 1 YKKAGLDSINISLDTL--------KPDKYEFITR-RKGWSRVLAGIDLAVQLGYDNLKVNVVVM 55 (172)
Q Consensus 1 L~~aGl~~v~iSlds~--------~~e~~~~i~g-~~~~~~vl~~i~~~~~~g~~~v~in~v~~ 55 (172)
|++.|++.|-++==.. +..-|..+.. -|+.+...+-|+++++.|+ +|-+-.|+.
T Consensus 42 l~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi-~vilD~V~N 104 (551)
T PRK10933 42 LQKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGI-RIILDMVFN 104 (551)
T ss_pred HHhCCCCEEEECCCCCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCC-EEEEEECCC
Confidence 5789999988643211 2222333332 2578889999999999999 788877754
No 446
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=29.43 E-value=1.6e+02 Score=20.26 Aligned_cols=40 Identities=23% Similarity=0.212 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCe
Q psy5052 30 WSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPID 76 (172)
Q Consensus 30 ~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~ 76 (172)
-+.+.+.++.+.+.|.+ ...++.| .+-+++++++++.|+.
T Consensus 65 ~~~~~~~v~~~~~~g~~----~v~~~~g---~~~~~~~~~a~~~gi~ 104 (116)
T PF13380_consen 65 PDKVPEIVDEAAALGVK----AVWLQPG---AESEELIEAAREAGIR 104 (116)
T ss_dssp HHHHHHHHHHHHHHT-S----EEEE-TT---S--HHHHHHHHHTT-E
T ss_pred HHHHHHHHHHHHHcCCC----EEEEEcc---hHHHHHHHHHHHcCCE
Confidence 45666666666666652 2334444 3334556666666543
No 447
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=29.43 E-value=1.4e+02 Score=26.55 Aligned_cols=24 Identities=13% Similarity=0.325 Sum_probs=18.8
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccc
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFI 24 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i 24 (172)
|.++|++.|-+..-+..++.++.+
T Consensus 115 L~~~GVd~IEvG~Pa~s~~e~e~i 138 (503)
T PLN03228 115 LAKLRVDIMEVGFPGSSEEEFEAV 138 (503)
T ss_pred HHHcCCCEEEEeCCCCCHHHHHHH
Confidence 468999999998888887666544
No 448
>PRK00910 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=29.41 E-value=1.5e+02 Score=23.32 Aligned_cols=30 Identities=20% Similarity=0.206 Sum_probs=16.2
Q ss_pred eEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHH
Q psy5052 8 SINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQ 42 (172)
Q Consensus 8 ~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~ 42 (172)
.+.||+|.. |..-+|-.+.+++. .|+.+.+
T Consensus 95 aFtvsVda~----~g~~TGISA~DRa~-Tir~la~ 124 (218)
T PRK00910 95 AFTVSIEAK----HGVTTGVSAQDRVT-TIKTAAN 124 (218)
T ss_pred CeEEEEecC----CCCCCCcCHHHHHH-HHHHHhC
Confidence 357888853 22234544566543 4666653
No 449
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=29.40 E-value=2.3e+02 Score=23.60 Aligned_cols=20 Identities=30% Similarity=0.562 Sum_probs=17.1
Q ss_pred CCHHHHHHHHHHHhcCCCeE
Q psy5052 58 FNDDEILDFVLLTRDRPIDV 77 (172)
Q Consensus 58 ~N~~ei~~l~~~a~~~g~~~ 77 (172)
.+.+|+.+++++|+++|+.|
T Consensus 83 YT~~di~eiv~yA~~rgI~V 102 (357)
T cd06563 83 YTQEEIREIVAYAAERGITV 102 (357)
T ss_pred ECHHHHHHHHHHHHHcCCEE
Confidence 35679999999999999874
No 450
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=29.17 E-value=2.8e+02 Score=23.38 Aligned_cols=27 Identities=19% Similarity=0.194 Sum_probs=20.9
Q ss_pred HHHHHHHHHhcCCCeEEEE--eeeeCCCC
Q psy5052 62 EILDFVLLTRDRPIDVRFI--EYMPFSGN 88 (172)
Q Consensus 62 ei~~l~~~a~~~g~~~~~i--~~~p~g~~ 88 (172)
-.+.++++|++.++++-.+ ||.|-+..
T Consensus 101 pae~Iv~~Aee~~aDLIVm~~~~~~~~~~ 129 (357)
T PRK12652 101 YAEVLIAYAEEHGIDRVVLDPEYNPGGTA 129 (357)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCCCCC
Confidence 3556899999999997666 67777764
No 451
>TIGR03356 BGL beta-galactosidase.
Probab=29.16 E-value=1.1e+02 Score=26.37 Aligned_cols=49 Identities=18% Similarity=0.102 Sum_probs=31.1
Q ss_pred ChhcCCCeEEEeeeCCCHhhh--ccccCCCCHHHHHHHHHHHHHcCCCcEEEE
Q psy5052 1 YKKAGLDSINISLDTLKPDKY--EFITRRKGWSRVLAGIDLAVQLGYDNLKVN 51 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~--~~i~g~~~~~~vl~~i~~~~~~g~~~v~in 51 (172)
|+++|++.+.+||.-..=+.- ..+. ...++.--+.|+.+++.|+ .+-|.
T Consensus 63 ~~~~G~~~~R~si~Wsri~p~g~~~~n-~~~~~~y~~~i~~l~~~gi-~pivt 113 (427)
T TIGR03356 63 MKELGVDAYRFSIAWPRIFPEGTGPVN-PKGLDFYDRLVDELLEAGI-EPFVT 113 (427)
T ss_pred HHHcCCCeEEcccchhhcccCCCCCcC-HHHHHHHHHHHHHHHHcCC-eeEEe
Confidence 578999999999853211110 1111 1147777889999999999 44444
No 452
>PRK05773 3,4-dihydroxy-2-butanone 4-phosphate synthase; Validated
Probab=29.15 E-value=1.4e+02 Score=23.45 Aligned_cols=8 Identities=0% Similarity=0.260 Sum_probs=5.1
Q ss_pred eEEEeeeC
Q psy5052 8 SINISLDT 15 (172)
Q Consensus 8 ~v~iSlds 15 (172)
.+.||+|.
T Consensus 94 aFtvsVd~ 101 (219)
T PRK05773 94 AFSLWVNH 101 (219)
T ss_pred eEEEEEcC
Confidence 36677774
No 453
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=29.10 E-value=1.1e+02 Score=27.55 Aligned_cols=53 Identities=17% Similarity=0.087 Sum_probs=35.7
Q ss_pred ChhcCCCeEEEeeeC---------CCHhhhccccC-CCCHHHHHHHHHHHHHcCCCcEEEEEEE
Q psy5052 1 YKKAGLDSINISLDT---------LKPDKYEFITR-RKGWSRVLAGIDLAVQLGYDNLKVNVVV 54 (172)
Q Consensus 1 L~~aGl~~v~iSlds---------~~~e~~~~i~g-~~~~~~vl~~i~~~~~~g~~~v~in~v~ 54 (172)
|++.|++.|.++=-. -++.-|-.+.. -|+-+...+-|++|++.|+ .|-+-+|.
T Consensus 166 l~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi-~VilD~V~ 228 (613)
T TIGR01515 166 VKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGI-GVILDWVP 228 (613)
T ss_pred HHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCC-EEEEEecc
Confidence 578999999873211 12222333332 2567888999999999999 78887765
No 454
>cd01304 FMDH_A Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor. FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen.
Probab=28.93 E-value=4.3e+02 Score=23.76 Aligned_cols=75 Identities=15% Similarity=0.283 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHH-cCCCcEEEEEE----EecCCCHHHHHHHHHHHhcCCCe-------EEEEeeeeCCCCCCCCCCCC
Q psy5052 29 GWSRVLAGIDLAVQ-LGYDNLKVNVV----VMKNFNDDEILDFVLLTRDRPID-------VRFIEYMPFSGNQWNNTKIM 96 (172)
Q Consensus 29 ~~~~vl~~i~~~~~-~g~~~v~in~v----~~~g~N~~ei~~l~~~a~~~g~~-------~~~i~~~p~g~~~~~~~~~~ 96 (172)
+-.+++.++..+.+ .|+ +..|-+. =.+| |.+...+.++.++++++. +--+.|..+|+..|. .+-
T Consensus 206 tp~~ii~~l~~~~~~lg~-ph~iH~h~nnlg~pg-n~~~t~~t~~~~~~~~~~~~~~~~h~tH~qfhsyg~~~~~--~~~ 281 (541)
T cd01304 206 TPREILKGLAEANEELGL-PHSIHVHCNNLGVPG-NYETTLETMKAAEGVKPDPRRQVLHLTHVQFHSYGGTSWR--DFE 281 (541)
T ss_pred CHHHHHHHHHHHHHhcCC-ceEEEEccccCCCCC-cHHHHHHHHHHhhcCCCccccceeEeeeeeEEeeccCCcc--cHh
Confidence 46888998888874 587 7776654 2355 888888899999988752 334566678887775 233
Q ss_pred CH-HHHHHHHHH
Q psy5052 97 PF-SEMLTKIKE 107 (172)
Q Consensus 97 ~~-~e~~~~l~~ 107 (172)
|. +++.+++.+
T Consensus 282 s~a~~i~~~~n~ 293 (541)
T cd01304 282 SGAERIADYVNA 293 (541)
T ss_pred HHHHHHHHHHHc
Confidence 33 345566654
No 455
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=28.89 E-value=2.9e+02 Score=22.36 Aligned_cols=21 Identities=14% Similarity=0.328 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHcCCCcEEEEE
Q psy5052 31 SRVLAGIDLAVQLGYDNLKVNV 52 (172)
Q Consensus 31 ~~vl~~i~~~~~~g~~~v~in~ 52 (172)
+...+.++.+++.|+ .|..+.
T Consensus 110 ~~t~~vv~~ah~~gv-~VEaEl 130 (276)
T cd00947 110 AKTKEVVELAHAYGV-SVEAEL 130 (276)
T ss_pred HHHHHHHHHHHHcCC-eEEEEE
Confidence 334444444444444 344443
No 456
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=28.84 E-value=1.8e+02 Score=24.21 Aligned_cols=50 Identities=20% Similarity=0.240 Sum_probs=34.9
Q ss_pred CHH--HHHHHHHHHhcCCCe-E-EEEeeeeCCCCC--CCCCCCCCHHHHHHHHHHh
Q psy5052 59 NDD--EILDFVLLTRDRPID-V-RFIEYMPFSGNQ--WNNTKIMPFSEMLTKIKEA 108 (172)
Q Consensus 59 N~~--ei~~l~~~a~~~g~~-~-~~i~~~p~g~~~--~~~~~~~~~~e~~~~l~~~ 108 (172)
|++ |+.-+++-+++.|+. + -.++|+|+.+.. ....+.++..-+-+.|+..
T Consensus 82 nd~l~eLll~~~alr~~ga~ri~~ViPYl~YaRQDr~~~~~e~isak~vA~lL~~~ 137 (330)
T PRK02812 82 NDHLMELLIMVDACRRASARQITAVIPYYGYARADRKTAGRESITAKLVANLITKA 137 (330)
T ss_pred cHHHHHHHHHHHHHHHhCCceEEEEEecccccccccccCCCCCchHHHHHHHHHhc
Confidence 554 666677778888884 5 446899998753 3344578888887888764
No 457
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional
Probab=28.78 E-value=2.1e+02 Score=23.49 Aligned_cols=52 Identities=17% Similarity=0.243 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEecCC--CHHHHHHHHHH-----------HhcCCCeEEEE
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVVVMKNF--NDDEILDFVLL-----------TRDRPIDVRFI 80 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v~~~g~--N~~ei~~l~~~-----------a~~~g~~~~~i 80 (172)
.++.+.+.++.+.+.|++.|++-.-=+.++ +.+|+..|+++ ..+.|+.++++
T Consensus 96 G~~~l~~v~~~c~~lGI~~lTvYaFStEN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~irir~i 160 (296)
T PRK14827 96 GEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLMGFNRDVVRRRRDNLNKMGVRIRWV 160 (296)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeeecchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEE
Confidence 588899999999999996455432212211 23576666555 34578888876
No 458
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=28.77 E-value=2.6e+02 Score=22.71 Aligned_cols=21 Identities=5% Similarity=0.146 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHcCCCcEEEEE
Q psy5052 31 SRVLAGIDLAVQLGYDNLKVNV 52 (172)
Q Consensus 31 ~~vl~~i~~~~~~g~~~v~in~ 52 (172)
+...+.++.+++.|+ .|..+.
T Consensus 115 ~~T~~vv~~Ah~~gv-sVEaEl 135 (284)
T PRK12737 115 AIVKEVVEFCHRYDA-SVEAEL 135 (284)
T ss_pred HHHHHHHHHHHHcCC-EEEEEE
Confidence 344444445555555 444444
No 459
>KOG1602|consensus
Probab=28.73 E-value=1.3e+02 Score=24.32 Aligned_cols=43 Identities=21% Similarity=0.390 Sum_probs=31.6
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEecCCCH--HHHHHHHHHHh
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVVVMKNFND--DEILDFVLLTR 71 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~--~ei~~l~~~a~ 71 (172)
.|.++.+-++.+.+.|+..|++-.--+.+++. .|+..++++++
T Consensus 65 Gf~~l~~ile~C~~lGI~~vT~fAFSieNFkRs~eEVd~LM~L~~ 109 (271)
T KOG1602|consen 65 GFEALKEILELCKELGIKEVTVFAFSIENFKRSPEEVDGLMDLAL 109 (271)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEEEehhhhCCCHHHHHHHHHHHH
Confidence 59999999999999999656665544543332 47888887765
No 460
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=28.67 E-value=3.6e+02 Score=23.57 Aligned_cols=69 Identities=13% Similarity=0.137 Sum_probs=41.1
Q ss_pred cCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCC-------HHHHHHHHHHHhcCCCe
Q psy5052 4 AGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFN-------DDEILDFVLLTRDRPID 76 (172)
Q Consensus 4 aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N-------~~ei~~l~~~a~~~g~~ 76 (172)
+|+.-+.|.+++.+. + .-..+.+.++++.+.+.+. ++++-++..+ .| .+++.+++++|++.++.
T Consensus 164 ~G~~vv~v~~~~~~~--~-----~~~~~~le~a~~~a~~~~~-~~k~l~l~nP-~NPTG~~~s~e~l~~L~~~a~~~~i~ 234 (496)
T PLN02376 164 TGVEIIPVPCSSSDN--F-----KLTVDAADWAYKKAQESNK-KVKGLILTNP-SNPLGTMLDKDTLTNLVRFVTRKNIH 234 (496)
T ss_pred CCCEEEEEeCCCCcc--C-----cCCHHHHHHHHHHHHhcCC-CeeEEEEcCC-CCCCCccCCHHHHHHHHHHHHHcCCE
Confidence 577666677754221 1 1145555555555555554 5665554455 34 36899999999988876
Q ss_pred EEEEe
Q psy5052 77 VRFIE 81 (172)
Q Consensus 77 ~~~i~ 81 (172)
+-.-|
T Consensus 235 lI~DE 239 (496)
T PLN02376 235 LVVDE 239 (496)
T ss_pred EEEEc
Confidence 54433
No 461
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=28.67 E-value=2.1e+02 Score=26.69 Aligned_cols=76 Identities=17% Similarity=0.159 Sum_probs=46.8
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCC---CHHHHHHHHHHHHHcCCC-cEEEEEEEecCCCHHHHHHHHHHHhcCCCe
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRK---GWSRVLAGIDLAVQLGYD-NLKVNVVVMKNFNDDEILDFVLLTRDRPID 76 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~---~~~~vl~~i~~~~~~g~~-~v~in~v~~~g~N~~ei~~l~~~a~~~g~~ 76 (172)
|.++|++.|||-=-++.+ .-..++.. -++.++++++.+.+ |++ .++|.+.++.| |..+ +++...+++++
T Consensus 590 L~~aG~~~IQiDEPal~e--~~~~~~~~~~~~l~~~v~a~n~a~~-~~~~~~~i~tH~C~g-~~~~---i~~~i~~l~vD 662 (758)
T PRK05222 590 LEAAGIKIIQIDEPALRE--GLPLRRSDWDAYLDWAVEAFRLATS-GVKDETQIHTHMCYS-EFND---IIDAIAALDAD 662 (758)
T ss_pred HHHcCCCEEEeeCchhhh--cCcccccCHHHHHHHHHHHHHHHHc-CCCCCCEEEEEEecc-ChHH---HHHHHHhCCCC
Confidence 457898877764333321 11122221 24666777776665 552 37899999996 6655 45555678999
Q ss_pred EEEEeee
Q psy5052 77 VRFIEYM 83 (172)
Q Consensus 77 ~~~i~~~ 83 (172)
+-.+|+-
T Consensus 663 ~~~lE~~ 669 (758)
T PRK05222 663 VISIETS 669 (758)
T ss_pred EEEEEec
Confidence 8888853
No 462
>PF04461 DUF520: Protein of unknown function (DUF520); InterPro: IPR007551 This entry represents the UPF0234 family of uncharacterised proteins.; PDB: 1IN0_A.
Probab=28.66 E-value=2.5e+02 Score=20.94 Aligned_cols=51 Identities=12% Similarity=0.259 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHcCCCcEEEEE----EEecCCCHHHHHHHHHHHhc--CCCeEEEEee
Q psy5052 31 SRVLAGIDLAVQLGYDNLKVNV----VVMKNFNDDEILDFVLLTRD--RPIDVRFIEY 82 (172)
Q Consensus 31 ~~vl~~i~~~~~~g~~~v~in~----v~~~g~N~~ei~~l~~~a~~--~g~~~~~i~~ 82 (172)
+.+.+-++..++.++ .|+... +=..|-+.+++.+.+.+.++ +++.++|.+|
T Consensus 103 d~AKkIvK~IKd~kl-KVqa~IQgd~vRVtgKkrDDLQ~viallk~~d~~~pLQF~Nf 159 (160)
T PF04461_consen 103 DTAKKIVKLIKDSKL-KVQAQIQGDQVRVTGKKRDDLQEVIALLKEQDLGIPLQFNNF 159 (160)
T ss_dssp HHHHHHHHHHHHH---SEEEEEETTEEEEEES-HHHHHHHHHHHHHS--SS--EEEEE
T ss_pred HHHHHHHHHHHhcCC-ceeEEecCcEEEEecCCHHHHHHHHHHHHcccCCCCceeccC
Confidence 444444445555555 344331 11235677888888888876 4556677655
No 463
>PRK12999 pyruvate carboxylase; Reviewed
Probab=28.56 E-value=5.6e+02 Score=25.34 Aligned_cols=89 Identities=18% Similarity=0.224 Sum_probs=49.8
Q ss_pred hhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEe-------cC-CCHHHHHHHHHHHhcC
Q psy5052 2 KKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVM-------KN-FNDDEILDFVLLTRDR 73 (172)
Q Consensus 2 ~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~-------~g-~N~~ei~~l~~~a~~~ 73 (172)
+++|++.+.|. |+++. .+.+..+|+.++++|. ...+.+..+ +. .+.+.+.++++-+.+.
T Consensus 637 ~~~Gid~~rif-d~lnd-----------~~~~~~~i~~vk~~g~-~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~ 703 (1146)
T PRK12999 637 AAAGIDVFRIF-DSLNW-----------VENMRVAIDAVRETGK-IAEAAICYTGDILDPARAKYDLDYYVDLAKELEKA 703 (1146)
T ss_pred HHcCCCEEEEe-ccCCh-----------HHHHHHHHHHHHHcCC-eEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHc
Confidence 45678777775 44432 4557778888888885 444444333 21 3555566777777788
Q ss_pred CCeEEEEeeeeCCCCCCCCCCCCCHHHHHHHHHHhC
Q psy5052 74 PIDVRFIEYMPFSGNQWNNTKIMPFSEMLTKIKEAH 109 (172)
Q Consensus 74 g~~~~~i~~~p~g~~~~~~~~~~~~~e~~~~l~~~~ 109 (172)
|++. +.+-.+-+. . .+....++...|++.+
T Consensus 704 Ga~~--i~ikDt~G~-l---~P~~~~~lv~~lk~~~ 733 (1146)
T PRK12999 704 GAHI--LAIKDMAGL-L---KPAAAYELVSALKEEV 733 (1146)
T ss_pred CCCE--EEECCccCC-C---CHHHHHHHHHHHHHHc
Confidence 8863 222222111 1 1223445666677665
No 464
>PLN02321 2-isopropylmalate synthase
Probab=28.54 E-value=1.6e+02 Score=26.96 Aligned_cols=79 Identities=23% Similarity=0.296 Sum_probs=43.8
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccC---C--C------------CHHH-HHHHHHHHHHcC--CCcEEEEEEEec----
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITR---R--K------------GWSR-VLAGIDLAVQLG--YDNLKVNVVVMK---- 56 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g---~--~------------~~~~-vl~~i~~~~~~g--~~~v~in~v~~~---- 56 (172)
|.++|++.|-+...+++|.-++.++. . + .|.+ ..+.|+.+.+++ .....|.+.+--
T Consensus 117 L~~lGVd~IEvGfP~~Sp~D~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~dId~A~~al~~a~~~~I~i~~stSd~h 196 (632)
T PLN02321 117 LAKLGVDIIEAGFPIASPDDLEAVKTIAKEVGNEVDEDGYVPVICGLSRCNKKDIDAAWEAVKHAKRPRIHTFIATSEIH 196 (632)
T ss_pred HHHcCCCEEEEeCcCCCccHHHHHHHHHHhcccCCCccccceeeeeehhccHHhHHHHHHHhcCCCCCEEEEEEcCCHHH
Confidence 56899999999887776653333321 1 1 1222 356667776653 211234443310
Q ss_pred -----CCCH----HHHHHHHHHHhcCCCe-EEE
Q psy5052 57 -----NFND----DEILDFVLLTRDRPID-VRF 79 (172)
Q Consensus 57 -----g~N~----~ei~~l~~~a~~~g~~-~~~ 79 (172)
+.+. +.+.+.+++|+++|.. +.|
T Consensus 197 ~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~f 229 (632)
T PLN02321 197 MEHKLRKTPDEVVEIARDMVKYARSLGCEDVEF 229 (632)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEE
Confidence 0122 2377899999999873 444
No 465
>COG0848 ExbD Biopolymer transport protein [Intracellular trafficking and secretion]
Probab=28.32 E-value=99 Score=22.25 Aligned_cols=24 Identities=17% Similarity=0.374 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEE
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNV 52 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~ 52 (172)
.|+.+++.+..++++|+.+|.+-+
T Consensus 109 ~y~~vv~vm~~l~~aG~~~v~L~t 132 (137)
T COG0848 109 KYGTVVKVMDLLKEAGFKKVGLVT 132 (137)
T ss_pred CHHHHHHHHHHHHHcCCceEEEEe
Confidence 699999999999999986555443
No 466
>PF13096 CENP-P: CENP-A-nucleosome distal (CAD) centromere subunit, CENP-P
Probab=28.27 E-value=1.3e+02 Score=22.81 Aligned_cols=14 Identities=14% Similarity=0.344 Sum_probs=12.2
Q ss_pred ceeeccCCcEEecC
Q psy5052 151 RLRLMADGSLKVCL 164 (172)
Q Consensus 151 ~~~i~~~G~v~pC~ 164 (172)
++.|+.+|++.|=+
T Consensus 121 ~i~IdeeG~v~P~L 134 (177)
T PF13096_consen 121 KIHIDEEGKVLPKL 134 (177)
T ss_pred EEEECCCCceeeee
Confidence 68999999999854
No 467
>PRK00014 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=28.25 E-value=1.6e+02 Score=23.32 Aligned_cols=29 Identities=21% Similarity=0.226 Sum_probs=15.5
Q ss_pred eEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHH
Q psy5052 8 SINISLDTLKPDKYEFITRRKGWSRVLAGIDLAV 41 (172)
Q Consensus 8 ~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~ 41 (172)
...||+|.. +..-+|-.+.+++. .|+.+.
T Consensus 99 ~ftvSVDa~----~gttTGISA~DRa~-Tir~La 127 (230)
T PRK00014 99 AFTVSIEAR----EGVTTGVSAVDRVT-TIRAAI 127 (230)
T ss_pred CeEEEEEcC----CCCCCCcCHHHHHH-HHHHHh
Confidence 467898853 22224544566543 355553
No 468
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=28.19 E-value=3.5e+02 Score=22.47 Aligned_cols=44 Identities=16% Similarity=0.185 Sum_probs=31.1
Q ss_pred HHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEEEE
Q psy5052 34 LAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRFI 80 (172)
Q Consensus 34 l~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~~i 80 (172)
.+.++.+.+.|+..+.|-+... ..+.+.+.+++++++|..+.+.
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~---e~~~~~~~i~~ak~~G~~v~~~ 134 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCT---EADVSEQHIGLARELGMDTVGF 134 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecc---hHHHHHHHHHHHHHCCCeEEEE
Confidence 4778888899985455443221 2356888999999999887653
No 469
>PF06943 zf-LSD1: LSD1 zinc finger; InterPro: IPR005735 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC []. This domain may play a role in the regulation of transcription, via either repression of a prodeath pathway or activation of an antideath pathway, in response to signals emanating from cells undergoing pathogen-induced hypersensitive cell death. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].
Probab=28.12 E-value=45 Score=16.80 Aligned_cols=15 Identities=33% Similarity=0.853 Sum_probs=11.5
Q ss_pred ccCCCceeeccCCcE
Q psy5052 146 CGTCNRLRLMADGSL 160 (172)
Q Consensus 146 C~~c~~~~i~~~G~v 160 (172)
|++|..+...|.|--
T Consensus 1 C~~Cr~~L~yp~GA~ 15 (25)
T PF06943_consen 1 CGGCRTLLMYPRGAP 15 (25)
T ss_pred CCCCCceEEcCCCCC
Confidence 778888888887753
No 470
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=28.11 E-value=1.3e+02 Score=24.98 Aligned_cols=45 Identities=13% Similarity=0.147 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcC
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDR 73 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~ 73 (172)
+.+++++.++.+.+.|++.+.+....-+....+.+.++++..++.
T Consensus 80 ~~eeI~~~a~~~~~~G~~~v~l~~G~~p~~~~~~~~e~i~~Ik~~ 124 (351)
T TIGR03700 80 SLEEIVARVKEAYAPGATEVHIVGGLHPNLPFEWYLDMIRTLKEA 124 (351)
T ss_pred CHHHHHHHHHHHHHCCCcEEEEecCCCCCCCHHHHHHHHHHHHHH
Confidence 579999999988888886555553322222334667777777764
No 471
>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria. LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence
Probab=28.09 E-value=3.7e+02 Score=22.67 Aligned_cols=75 Identities=13% Similarity=0.077 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEEEE---eeeeCCCCCCCCCCCCCHHHHHHHH
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRFI---EYMPFSGNQWNNTKIMPFSEMLTKI 105 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~~i---~~~p~g~~~~~~~~~~~~~e~~~~l 105 (172)
.++.+++.+..+.+.|- +|-| =|... =+..+++++++.+..+++- -+|-.|+-+....+.++.+|+.+.+
T Consensus 176 d~~~~~~~L~~~~~~~~-pv~l-----~Gftf-~~~~~~~~l~~~~~~~~L~~~s~vi~~GGwK~~~~e~v~r~ef~~~l 248 (365)
T PF04443_consen 176 DLEGLIEALFRAEHSGE-PVLL-----FGFTF-FIWFLLDELEERGIRFRLPKGSIVIHGGGWKGRRKEAVSREEFYARL 248 (365)
T ss_pred CHHHHHHHHHHHHhCCC-CEEE-----ECchH-HHHHHHHHHHhcCCcccCCCCCEEEeCCCCCccccCccCHHHHHHHH
Confidence 47778888888877775 5543 25554 3455667777777765442 2334443222234668999999999
Q ss_pred HHhCC
Q psy5052 106 KEAHP 110 (172)
Q Consensus 106 ~~~~~ 110 (172)
++.++
T Consensus 249 ~~~~G 253 (365)
T PF04443_consen 249 QEVFG 253 (365)
T ss_pred HHHHC
Confidence 98774
No 472
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=28.07 E-value=1.5e+02 Score=23.22 Aligned_cols=16 Identities=13% Similarity=0.129 Sum_probs=8.1
Q ss_pred HHHHHHHHHHhcCCCe
Q psy5052 61 DEILDFVLLTRDRPID 76 (172)
Q Consensus 61 ~ei~~l~~~a~~~g~~ 76 (172)
.++.++.+.+++.|+.
T Consensus 47 ~~~~~l~~~~~~~gl~ 62 (275)
T PRK09856 47 GGIKQIKALAQTYQMP 62 (275)
T ss_pred hHHHHHHHHHHHcCCe
Confidence 3445555555555554
No 473
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=28.03 E-value=98 Score=22.11 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=13.1
Q ss_pred CHHHHHHHHHHHHHcCCCcEEE
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKV 50 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~i 50 (172)
.++.+++.++.++++|+.+|.+
T Consensus 111 ~~~~vv~vmd~l~~aG~~~v~l 132 (141)
T PRK11267 111 DYETLMKVMDTLHQAGYLKIGL 132 (141)
T ss_pred CHHHHHHHHHHHHHcCCCeEEE
Confidence 4666666666666666643443
No 474
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=27.62 E-value=2.6e+02 Score=23.89 Aligned_cols=39 Identities=28% Similarity=0.359 Sum_probs=24.0
Q ss_pred hhcCCCeEE-EeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcC
Q psy5052 2 KKAGLDSIN-ISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLG 44 (172)
Q Consensus 2 ~~aGl~~v~-iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g 44 (172)
...|+|.+- .=||+++.+.++++...+ +++.++.+++.|
T Consensus 104 ekl~~Dy~D~yliH~l~~e~~~k~~~~g----~~df~~kak~eG 143 (391)
T COG1453 104 EKLGTDYIDYYLIHGLNTETWEKIERLG----VFDFLEKAKAEG 143 (391)
T ss_pred HHhCCchhhhhhhccccHHHHHHHHccC----hHHHHHHHHhcC
Confidence 445566554 457778878877776533 455566666554
No 475
>PF07615 Ykof: YKOF-related Family; InterPro: IPR011522 This entry represents YkoF-related proteins. YkoF is involved in the hydroxymethyl pyrimidine (HMP) salvage pathway []. The domain is found in pairs in these proteins.; PDB: 1S7H_A 1S99_A 1SBR_B.
Probab=27.57 E-value=1.8e+02 Score=18.83 Aligned_cols=61 Identities=11% Similarity=0.198 Sum_probs=40.7
Q ss_pred eEEEeeeCCCHhhhccccCCCCH-HHHHHHHHHHHHcCCCcEEEE--EEEecCCCHHH----HHHHHHHHhcCCCeEEE
Q psy5052 8 SINISLDTLKPDKYEFITRRKGW-SRVLAGIDLAVQLGYDNLKVN--VVVMKNFNDDE----ILDFVLLTRDRPIDVRF 79 (172)
Q Consensus 8 ~v~iSlds~~~e~~~~i~g~~~~-~~vl~~i~~~~~~g~~~v~in--~v~~~g~N~~e----i~~l~~~a~~~g~~~~~ 79 (172)
..++||.-+.. +.| +.++++|+++...|+ .++-+ .+.++| ..++ +.++.+.+.+.+.++.+
T Consensus 3 ~a~~SLYPmg~---------~dy~~~I~~~i~~~~~~gl-~~~t~~~sT~l~G-~~~~Vf~~l~~~~~~a~~~~~H~v~ 70 (81)
T PF07615_consen 3 GAQFSLYPMGT---------DDYMDVILGAIDRLDDSGL-WVETDHYSTQLRG-DEEDVFDALEAAFERAAEEGPHVVM 70 (81)
T ss_dssp EEEEEEEETTS---------TTHHHHHHHHHHHCHHTTS-EEEEETTEEEEEC-BHHHHHHHHHHHHHHHHCCSSSEEE
T ss_pred eEEEEecccCC---------ccHHHHHHHHHHHHhhcCc-EEeecccEEEEEC-CHHHHHHHHHHHHHHHhccCCeEEE
Confidence 45678777631 233 667789999999998 67766 466777 5544 55677777777665543
No 476
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=27.54 E-value=1.5e+02 Score=24.09 Aligned_cols=42 Identities=14% Similarity=0.332 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCC
Q psy5052 30 WSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPI 75 (172)
Q Consensus 30 ~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~ 75 (172)
-+-+++.++.+.+.|. ++-|-|| |+.+++++.+-+++++.++
T Consensus 79 P~~~~~~l~~~~~~~~-~lVIGTT---Gf~~e~~~~l~~~a~~v~v 120 (266)
T COG0289 79 PEATLENLEFALEHGK-PLVIGTT---GFTEEQLEKLREAAEKVPV 120 (266)
T ss_pred chhhHHHHHHHHHcCC-CeEEECC---CCCHHHHHHHHHHHhhCCE
Confidence 4677889999999997 6777664 6788888888888887554
No 477
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=27.51 E-value=3.2e+02 Score=21.79 Aligned_cols=80 Identities=13% Similarity=0.066 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHH-HcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCe-EEEEe-eeeCCCCCCCCCCCCCHHHHHHHH
Q psy5052 29 GWSRVLAGIDLAV-QLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPID-VRFIE-YMPFSGNQWNNTKIMPFSEMLTKI 105 (172)
Q Consensus 29 ~~~~vl~~i~~~~-~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~-~~~i~-~~p~g~~~~~~~~~~~~~e~~~~l 105 (172)
.....++....++ +.|+ ++-...+.. +.|..++...+.-+...|+. +-.+. =.|.+........+-...++++.+
T Consensus 42 ~~~~t~~~a~~l~~~~g~-~~i~Hlt~r-~~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i 119 (272)
T TIGR00676 42 TRDRTVRIVRRIKKETGI-PTVPHLTCI-GATREEIREILREYRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFI 119 (272)
T ss_pred cHHHHHHHHHHHHHhcCC-CeeEEeeec-CCCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHH
Confidence 4566677777777 5698 676676654 48999999988888889975 21121 011111001112233566788888
Q ss_pred HHhCC
Q psy5052 106 KEAHP 110 (172)
Q Consensus 106 ~~~~~ 110 (172)
++.++
T Consensus 120 ~~~~~ 124 (272)
T TIGR00676 120 RNEFG 124 (272)
T ss_pred HHhcC
Confidence 77654
No 478
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=27.41 E-value=1.3e+02 Score=26.75 Aligned_cols=54 Identities=17% Similarity=0.094 Sum_probs=36.3
Q ss_pred ChhcCCCeEEEeeeCCC--------Hhhhcccc-CCCCHHHHHHHHHHHHHcCCCcEEEEEEEe
Q psy5052 1 YKKAGLDSINISLDTLK--------PDKYEFIT-RRKGWSRVLAGIDLAVQLGYDNLKVNVVVM 55 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~--------~e~~~~i~-g~~~~~~vl~~i~~~~~~g~~~v~in~v~~ 55 (172)
|++.|++.|.++==-.. ..-|..+. .-|+.+...+-|++|++.|+ +|-+-+|+.
T Consensus 36 l~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi-~vilD~v~N 98 (543)
T TIGR02403 36 LKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNI-KIMLDMVFN 98 (543)
T ss_pred HHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCC-EEEEEECcc
Confidence 57889988875432222 22233332 23578999999999999999 788777664
No 479
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=27.40 E-value=98 Score=26.37 Aligned_cols=56 Identities=14% Similarity=0.217 Sum_probs=36.2
Q ss_pred ChhcCCCeEEEeeeCCCHhhh----ccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEecC
Q psy5052 1 YKKAGLDSINISLDTLKPDKY----EFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKN 57 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~----~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g 57 (172)
++++|++.|+|-+=...=... -.+.+...+..+-++|+.+++.|+ .|-++....+|
T Consensus 82 ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi-~V~iD~H~~~~ 141 (407)
T COG2730 82 IKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGI-YVLIDLHGYPG 141 (407)
T ss_pred HHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCe-eEEEEecccCC
Confidence 368899988854432210111 112222356677888999999999 89999877763
No 480
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=27.26 E-value=2.7e+02 Score=20.91 Aligned_cols=72 Identities=11% Similarity=0.167 Sum_probs=42.2
Q ss_pred HHHHHHHHH-HHHcCCCcEEEEEEEecCCCHHHHH-HHHHHHhcCCCeEEEEeeeeCCCCCCCCCCCCCHHHHHHHHHHh
Q psy5052 31 SRVLAGIDL-AVQLGYDNLKVNVVVMKNFNDDEIL-DFVLLTRDRPIDVRFIEYMPFSGNQWNNTKIMPFSEMLTKIKEA 108 (172)
Q Consensus 31 ~~vl~~i~~-~~~~g~~~v~in~v~~~g~N~~ei~-~l~~~a~~~g~~~~~i~~~p~g~~~~~~~~~~~~~e~~~~l~~~ 108 (172)
|+--..|.. +.++|. .+ +..++.++ ....+. .+.+++.+. +++-+. +|+.... +...+++.....+.+.
T Consensus 26 D~sG~~l~~~L~~ag~-~~-~~~~iV~D-~~~~I~~~l~~~~~~~-~Dvvlt----tGGTG~t-~RDvTpEA~~~~~dKe 96 (169)
T COG0521 26 DKSGPLLVELLEEAGH-NV-AAYTIVPD-DKEQIRATLIALIDED-VDVVLT----TGGTGIT-PRDVTPEATRPLFDKE 96 (169)
T ss_pred ccchhHHHHHHHHcCC-cc-ceEEEeCC-CHHHHHHHHHHHhcCC-CCEEEE----cCCccCC-CCcCCHHHHHHHHhcc
Confidence 333444444 457887 56 67778883 555554 466666655 665443 5553322 2346778777777776
Q ss_pred CCC
Q psy5052 109 HPD 111 (172)
Q Consensus 109 ~~~ 111 (172)
.|+
T Consensus 97 ipG 99 (169)
T COG0521 97 IPG 99 (169)
T ss_pred CCc
Confidence 654
No 481
>PRK07094 biotin synthase; Provisional
Probab=27.21 E-value=2.9e+02 Score=22.34 Aligned_cols=17 Identities=29% Similarity=0.395 Sum_probs=8.4
Q ss_pred CHHHHHHHHHHHHHcCC
Q psy5052 29 GWSRVLAGIDLAVQLGY 45 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~ 45 (172)
+.+++++-++.+.+.|+
T Consensus 71 s~eei~~~~~~~~~~g~ 87 (323)
T PRK07094 71 SPEEILECAKKAYELGY 87 (323)
T ss_pred CHHHHHHHHHHHHHCCC
Confidence 34455555555544454
No 482
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=27.16 E-value=1.8e+02 Score=25.86 Aligned_cols=78 Identities=12% Similarity=0.247 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEecCC---CHH--HHHHHHHHHhcCCCeE--EEEee-----------eeCCCCCCC
Q psy5052 30 WSRVLAGIDLAVQLGYDNLKVNVVVMKNF---NDD--EILDFVLLTRDRPIDV--RFIEY-----------MPFSGNQWN 91 (172)
Q Consensus 30 ~~~vl~~i~~~~~~g~~~v~in~v~~~g~---N~~--ei~~l~~~a~~~g~~~--~~i~~-----------~p~g~~~~~ 91 (172)
|..=-.++..+.+..+.-+||-=..+.-. |.. =++.++++|+++|.++ .-+|- .++|. .|.
T Consensus 422 FGTGYSnL~YLq~L~VDaLKIDKsFvdtlg~~~a~~~I~~hII~MAk~L~L~iVaEGVEteeQ~~~LR~~Gv~~gQ-GW~ 500 (524)
T COG4943 422 FGTGYSNLHYLQSLPVDALKIDKSFVDTLGTDSASHLIAPHIIEMAKSLGLKIVAEGVETEEQVDWLRKRGVHYGQ-GWL 500 (524)
T ss_pred CcCcchhHHHHhhCCccceeccHHHHHhhccCcccchhHHHHHHHHHHcCCcEEeecccHHHHHHHHHHcCCcccc-ccc
Confidence 44444556666655543344432111101 111 2455677777666543 22211 12332 488
Q ss_pred CCCCCCHHHHHHHHHHh
Q psy5052 92 NTKIMPFSEMLTKIKEA 108 (172)
Q Consensus 92 ~~~~~~~~e~~~~l~~~ 108 (172)
....++.++|+++++++
T Consensus 501 fskaLp~q~Fi~~~~q~ 517 (524)
T COG4943 501 FSKALPAQAFLDWAEQQ 517 (524)
T ss_pred cCCCCCHHHHHHHHHhC
Confidence 88899999999998875
No 483
>PRK07328 histidinol-phosphatase; Provisional
Probab=27.13 E-value=92 Score=24.72 Aligned_cols=15 Identities=20% Similarity=0.042 Sum_probs=11.6
Q ss_pred hcCCCeEEEeeeCCC
Q psy5052 3 KAGLDSINISLDTLK 17 (172)
Q Consensus 3 ~aGl~~v~iSlds~~ 17 (172)
+..+|.+-.|+|..+
T Consensus 103 ~~~~D~vigSvH~~~ 117 (269)
T PRK07328 103 AYPFDYVIGSVHYLG 117 (269)
T ss_pred hCCCCeEEEEEeecC
Confidence 456888999999864
No 484
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=27.10 E-value=3.2e+02 Score=22.25 Aligned_cols=47 Identities=11% Similarity=0.073 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEecCCCH---------HHHHHHHHHHhcCCCeE
Q psy5052 30 WSRVLAGIDLAVQLGYDNLKVNVVVMKNFND---------DEILDFVLLTRDRPIDV 77 (172)
Q Consensus 30 ~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~---------~ei~~l~~~a~~~g~~~ 77 (172)
.+...+.++.+++.|+ .|.-+.=-+.|..+ .+.++..+|+++.|++.
T Consensus 117 i~~Trevv~~Ah~~gv-~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~TgvD~ 172 (285)
T PRK07709 117 VETTKKVVEYAHARNV-SVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDC 172 (285)
T ss_pred HHHHHHHHHHHHHcCC-EEEEEEeccCCccCCcccccccCCCHHHHHHHHHHhCCCE
Confidence 4455566666666776 56666544443322 24566777777777763
No 485
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=27.04 E-value=2.5e+02 Score=22.17 Aligned_cols=43 Identities=21% Similarity=0.262 Sum_probs=30.7
Q ss_pred HHHHHHHHHcCCCcEEEEEEEecCCC-HHHHHHHHHHHhcCCCeEEEE
Q psy5052 34 LAGIDLAVQLGYDNLKVNVVVMKNFN-DDEILDFVLLTRDRPIDVRFI 80 (172)
Q Consensus 34 l~~i~~~~~~g~~~v~in~v~~~g~N-~~ei~~l~~~a~~~g~~~~~i 80 (172)
.+.++.+.+.|+..+.+- . + .| .+.+.+.++++++.|..+.+.
T Consensus 88 ~~~i~~a~~~g~~~iri~--~-~-~s~~~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 88 VDDLKMAADLGVDVVRVA--T-H-CTEADVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred HHHHHHHHHcCCCEEEEE--e-c-hhhHHHHHHHHHHHHHCCCeEEEE
Confidence 577888899898534433 2 2 33 357889999999999876553
No 486
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=26.97 E-value=2.6e+02 Score=21.57 Aligned_cols=45 Identities=11% Similarity=0.268 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCC
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPI 75 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~ 75 (172)
....+.++|+.+.+.|. +| ||+.+-.-.....+.++++++.+.|+
T Consensus 110 ~~~~~~~ai~~a~~~~~-~i-in~S~g~~~~~~~~~~~~~~a~~~gi 154 (260)
T cd07484 110 SLADIANGIRYAADKGA-KV-INLSLGGGLGSTALQEAINYAWNKGV 154 (260)
T ss_pred CHHHHHHHHHHHHHCCC-eE-EEecCCCCCCCHHHHHHHHHHHHCCC
Confidence 45556666666666665 33 33332110123345566666665554
No 487
>PRK12452 cardiolipin synthetase; Reviewed
Probab=26.76 E-value=1.6e+02 Score=25.95 Aligned_cols=45 Identities=24% Similarity=0.317 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEEEE
Q psy5052 30 WSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRFI 80 (172)
Q Consensus 30 ~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~~i 80 (172)
++..++.|..|++ .|.|.+.-. ..++++.+.+..|+..||+|+++
T Consensus 346 ~~~~l~~I~~A~~----~I~I~tpYf--~pd~~l~~aL~~Aa~rGV~Vrii 390 (509)
T PRK12452 346 RNTLLAVMGSAKK----SIWIATPYF--IPDQETLTLLRLSAISGIDVRIL 390 (509)
T ss_pred HHHHHHHHHHhhh----EEEEECCcc--CCCHHHHHHHHHHHHcCCEEEEE
No 488
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.76 E-value=3.6e+02 Score=22.12 Aligned_cols=66 Identities=11% Similarity=0.097 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHc-CCCcEEEEEEEecCCCHH---HHHHHHHHHhcCCCeEEEEeeeeCCCCCCCCCCCCCHHHHHHHHH
Q psy5052 31 SRVLAGIDLAVQL-GYDNLKVNVVVMKNFNDD---EILDFVLLTRDRPIDVRFIEYMPFSGNQWNNTKIMPFSEMLTKIK 106 (172)
Q Consensus 31 ~~vl~~i~~~~~~-g~~~v~in~v~~~g~N~~---ei~~l~~~a~~~g~~~~~i~~~p~g~~~~~~~~~~~~~e~~~~l~ 106 (172)
+++.+-++.+++. |+ +-++-.++.- .+.+ .+..-.+.|++.|+....+++- +..+.+|+++.|+
T Consensus 15 ~~i~~~v~~l~~~~g~-~P~Laii~vg-~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~----------~~~~~~el~~~I~ 82 (295)
T PRK14174 15 NELKTRVEAYRAKTGK-VPGLTVIIVG-EDPASQVYVRNKAKSCKEIGMNSTVIELP----------ADTTEEHLLKKIE 82 (295)
T ss_pred HHHHHHHHHHHHccCC-CCeEEEEEeC-CChHHHHHHHHHHHHHHHcCCEEEEEECC----------CCCCHHHHHHHHH
Confidence 4555667777655 76 4566655543 2332 3667888899999987777661 2345666777766
Q ss_pred Hh
Q psy5052 107 EA 108 (172)
Q Consensus 107 ~~ 108 (172)
+.
T Consensus 83 ~l 84 (295)
T PRK14174 83 DL 84 (295)
T ss_pred HH
Confidence 54
No 489
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=26.63 E-value=3.4e+02 Score=23.34 Aligned_cols=77 Identities=16% Similarity=0.127 Sum_probs=40.1
Q ss_pred hhcCCCeEEEeeeCCCHhhhccccC-CCCHHHHHHHHHHHHHcCCCcEEE-EE-EEec----C-CC-HHHHHHHHHH---
Q psy5052 2 KKAGLDSINISLDTLKPDKYEFITR-RKGWSRVLAGIDLAVQLGYDNLKV-NV-VVMK----N-FN-DDEILDFVLL--- 69 (172)
Q Consensus 2 ~~aGl~~v~iSlds~~~e~~~~i~g-~~~~~~vl~~i~~~~~~g~~~v~i-n~-v~~~----g-~N-~~ei~~l~~~--- 69 (172)
+.+|+..|...|+.... | ..+.+.+.+--+...++|+ ...+ +. .+.. | -+ +.+|+...+.
T Consensus 20 rQ~G~~giV~al~~~p~-------gevW~~~~i~~~k~~ie~~GL-~~~vvEs~pv~e~Ik~g~~~rd~~Ienyk~~irN 91 (394)
T TIGR00695 20 RQAGATGIVTALHHIPN-------GEVWEKEEIRKRKEYIESAGL-HWSVVESVPVHEAIKTGTGNYGRWIENYKQTLRN 91 (394)
T ss_pred hhcCCcceeecCCCCCC-------CCCCCHHHHHHHHHHHHHcCC-eEEEEeCCCccHHHHcCCCcHHHHHHHHHHHHHH
Confidence 45677777766654421 2 2356666666666667787 4444 21 1110 0 01 1234433333
Q ss_pred HhcCCCeEEEEeeeeCC
Q psy5052 70 TRDRPIDVRFIEYMPFS 86 (172)
Q Consensus 70 a~~~g~~~~~i~~~p~g 86 (172)
..+.|+.+-.-+|||+.
T Consensus 92 la~~GI~vicYNFMPv~ 108 (394)
T TIGR00695 92 LAQCGIKTVCYNFMPVL 108 (394)
T ss_pred HHHcCCCEEEEEecccc
Confidence 33467777666778864
No 490
>TIGR01866 cas_Csn2 CRISPR-associated protein, Csn2 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas loci. The species range so far for this subtype is animal pathogens and commensals only. This protein is present in some but not all NMENI CRISPR/Cas loci.
Probab=26.58 E-value=2.7e+02 Score=21.73 Aligned_cols=55 Identities=15% Similarity=0.132 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeEEEEeee
Q psy5052 29 GWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDVRFIEYM 83 (172)
Q Consensus 29 ~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~~~i~~~ 83 (172)
.|+++.+-++-..+.....+-+-+=+-.=.+.+|+.++.+++....+.+-|+|+.
T Consensus 146 ~~eki~~~lki~~~l~~kki~ifvNl~~YLt~eei~el~~~i~~~~~~vlliE~~ 200 (216)
T TIGR01866 146 LLEKCLEILQIFKELTKKKLFIFINSGAFLTKDELAELQKFISYTKLTVLFLEPR 200 (216)
T ss_pred HHHHHHHHHHHHHHHhcCcEEEEEcHHHhCCHHHHHHHHHHHHHhcccEEEEecc
Confidence 5777777777666654322222111112257789999999999988888888874
No 491
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=26.54 E-value=3.4e+02 Score=21.86 Aligned_cols=101 Identities=15% Similarity=0.154 Sum_probs=58.2
Q ss_pred hhcCCCeEE-EeeeCCCHhhhc---cccC-------CCCHHHHHHHHHHHHHcCCCcEEEEEEEecC--CCHHHHHHHHH
Q psy5052 2 KKAGLDSIN-ISLDTLKPDKYE---FITR-------RKGWSRVLAGIDLAVQLGYDNLKVNVVVMKN--FNDDEILDFVL 68 (172)
Q Consensus 2 ~~aGl~~v~-iSlds~~~e~~~---~i~g-------~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g--~N~~ei~~l~~ 68 (172)
+++|.+.++ |-||+-.+..++ +|.. +|... . +.++.+.+.|..+|.|++.+.+. +|-+-+.+++
T Consensus 53 ~~~Ga~~lHvVDLdgg~~~n~~~i~~i~~~~~~vqvGGGIR-~-e~i~~~l~~Ga~rViigT~Av~~~~~~p~~v~~~~- 129 (262)
T PLN02446 53 KRDGLTGGHVIMLGADDASLAAALEALRAYPGGLQVGGGVN-S-ENAMSYLDAGASHVIVTSYVFRDGQIDLERLKDLV- 129 (262)
T ss_pred HHCCCCEEEEEECCCCCcccHHHHHHHHhCCCCEEEeCCcc-H-HHHHHHHHcCCCEEEEchHHHhCCCCCHHHHHHHH-
Confidence 467888888 889884433222 2211 24565 4 99999999999899999988751 1244444444
Q ss_pred HHhcCCC---eEEEEeee-eCC-----CCCCCCCCCCCHHHHHHHHHHh
Q psy5052 69 LTRDRPI---DVRFIEYM-PFS-----GNQWNNTKIMPFSEMLTKIKEA 108 (172)
Q Consensus 69 ~a~~~g~---~~~~i~~~-p~g-----~~~~~~~~~~~~~e~~~~l~~~ 108 (172)
+..|- -+-+ ..- --| ...|.....++..|+...+.+.
T Consensus 130 --~~~G~~~Ivvsi-D~k~~~g~~~Va~~GW~~~t~~~~~e~~~~~~~~ 175 (262)
T PLN02446 130 --RLVGKQRLVLDL-SCRKKDGRYYVVTDRWQKFSDLAVDEETLEFLAA 175 (262)
T ss_pred --HHhCCCCEEEEE-EEEecCCCEEEEECCCcccCCCCHHHHHHHHHHh
Confidence 44442 1111 111 011 1237655667888875555544
No 492
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=26.54 E-value=1.4e+02 Score=24.99 Aligned_cols=51 Identities=10% Similarity=0.062 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHhcCCCeEEEEeeee-CCCCCCCCCCCCCHHHHHHHHHHh
Q psy5052 58 FNDDEILDFVLLTRDRPIDVRFIEYMP-FSGNQWNNTKIMPFSEMLTKIKEA 108 (172)
Q Consensus 58 ~N~~ei~~l~~~a~~~g~~~~~i~~~p-~g~~~~~~~~~~~~~e~~~~l~~~ 108 (172)
+|.+-..++++||+++|..+++..++= .....|.....++.+++.+.+++.
T Consensus 79 f~Fe~AD~ia~FAr~h~m~lhGHtLvW~~q~P~W~~~~e~~~~~~~~~~e~h 130 (345)
T COG3693 79 FNFEAADAIANFARKHNMPLHGHTLVWHSQVPDWLFGDELSKEALAKMVEEH 130 (345)
T ss_pred cCccchHHHHHHHHHcCCeeccceeeecccCCchhhccccChHHHHHHHHHH
Confidence 355668899999999999988877642 222346554446667666666554
No 493
>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]
Probab=26.49 E-value=3.6e+02 Score=22.01 Aligned_cols=77 Identities=12% Similarity=0.178 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHHH-cCCCcEEEEEEEecC----CCHHHHHHHHHHHhcCC-CeE--EEEeeeeCCCCCCCCCCCCCHHH
Q psy5052 29 GWSRVLAGIDLAVQ-LGYDNLKVNVVVMKN----FNDDEILDFVLLTRDRP-IDV--RFIEYMPFSGNQWNNTKIMPFSE 100 (172)
Q Consensus 29 ~~~~vl~~i~~~~~-~g~~~v~in~v~~~g----~N~~ei~~l~~~a~~~g-~~~--~~i~~~p~g~~~~~~~~~~~~~e 100 (172)
+++++.+++..+.+ .+. .+.+.++.-.| .+..++.++++.+++.. +.+ .+......|.+-.. + -+.++
T Consensus 119 ~l~~i~~~Ln~~~~~~~v-~i~~e~~agegs~~g~~F~~L~eii~~~~~~~~igvCiDtcH~~Aagy~~~~--~-~~~~~ 194 (280)
T COG0648 119 GLNRIAEALNELLEEEGV-IILLENTAGEGSGKGTQFGELAEIIDLIEEKERIGVCIDTCHAFAAGYDIIT--E-EDFEK 194 (280)
T ss_pred HHHHHHHHHHHHhhccCC-eEEEEEeccccCccccchhhHHHHHHhhcccCceEEEEEchhhhhccCCcCc--H-HHHHH
Confidence 68888899988886 443 33333333222 34568889999988765 433 33333333332111 1 33556
Q ss_pred HHHHHHHhC
Q psy5052 101 MLTKIKEAH 109 (172)
Q Consensus 101 ~~~~l~~~~ 109 (172)
+++.+.+..
T Consensus 195 vl~~~d~~~ 203 (280)
T COG0648 195 VLNEFDKVL 203 (280)
T ss_pred HHHHHHHHh
Confidence 666666554
No 494
>COG0620 MetE Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=26.42 E-value=1.5e+02 Score=24.62 Aligned_cols=71 Identities=17% Similarity=0.170 Sum_probs=41.6
Q ss_pred ChhcCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHH-cCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeE
Q psy5052 1 YKKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQ-LGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDV 77 (172)
Q Consensus 1 L~~aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~-~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~ 77 (172)
|.++|+..|+|.--++......+- ...-++.++++++.+.+ .|- .++|.+.++.+ +..++ .+....+.+++
T Consensus 167 l~~agi~~iQiDEpal~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~-d~~i~~HiCy~-e~~~~---~~~i~~ld~dv 238 (330)
T COG0620 167 LEDAGIKIIQIDEPALREGLPLRR-DDDYLEWAVEAINLAAAGVGA-DTQIHLHICYS-EFNDI---PDAIEALDADV 238 (330)
T ss_pred HHHcCCCEEeechhhhhcCCcccc-chHHHHHHHHHHHHHHhcCCC-CcEEEEEEECC-cccch---hHHHhhcCCcE
Confidence 467888776654333322111110 12357888888888875 465 79999999985 55444 44444455554
No 495
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=26.36 E-value=3.2e+02 Score=22.16 Aligned_cols=66 Identities=15% Similarity=0.074 Sum_probs=33.1
Q ss_pred cCCCeEEEeeeCCCHhhhccccCCCCHHHHHHHHHHHHHcCCCcEEEEEEEecCCCH----HHHHH----HHHHHhcCCC
Q psy5052 4 AGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFND----DEILD----FVLLTRDRPI 75 (172)
Q Consensus 4 aGl~~v~iSlds~~~e~~~~i~g~~~~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~----~ei~~----l~~~a~~~g~ 75 (172)
+|.+.|.+.+.--++..++ .++++-+..+.+.+.|+ ++-+.+ .-||.+. +...+ ..+++.++|+
T Consensus 109 lgadAV~~~Vy~Gse~e~~------~i~~~~~v~~~a~~~Gm-p~v~~~-YpRg~~~~~~~~~d~~~v~~aaRlaaelGA 180 (265)
T COG1830 109 LGADAVGATVYVGSETERE------MIENISQVVEDAHELGM-PLVAWA-YPRGPAIKDEYHRDADLVGYAARLAAELGA 180 (265)
T ss_pred CCCcEEEEEEecCCcchHH------HHHHHHHHHHHHHHcCC-ceEEEE-eccCCcccccccccHHHHHHHHHHHHHhcC
Confidence 4455555555444433322 35566666777777887 444322 2233333 22223 3346667777
Q ss_pred eE
Q psy5052 76 DV 77 (172)
Q Consensus 76 ~~ 77 (172)
++
T Consensus 181 DI 182 (265)
T COG1830 181 DI 182 (265)
T ss_pred Ce
Confidence 64
No 496
>PF09345 DUF1987: Domain of unknown function (DUF1987); InterPro: IPR018530 This family of proteins are functionally uncharacterised.
Probab=26.28 E-value=2.1e+02 Score=19.35 Aligned_cols=50 Identities=14% Similarity=0.185 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEecCCCHH------HHHHHHHHHhcCCCeEEEE
Q psy5052 30 WSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDD------EILDFVLLTRDRPIDVRFI 80 (172)
Q Consensus 30 ~~~vl~~i~~~~~~g~~~v~in~v~~~g~N~~------ei~~l~~~a~~~g~~~~~i 80 (172)
|+.+++-++...+..-.++++++-+.= +|.+ +|-++++=+.+.|..|.+.
T Consensus 27 y~Pi~~wl~~Yl~~~~~~i~~~~~L~Y-fNTSSsk~l~~i~~~Le~~~~~g~~V~v~ 82 (99)
T PF09345_consen 27 YQPILDWLEAYLAEPNKPITFNFKLSY-FNTSSSKALMDIFDLLEDAAQKGGKVTVN 82 (99)
T ss_pred HHHHHHHHHHHHhCCCCcEEEEEEEEE-EecHhHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 889999999998764347888887766 7765 3444444445566665543
No 497
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=26.19 E-value=40 Score=17.31 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=13.1
Q ss_pred ccCCCceeeccCCcEEecCC
Q psy5052 146 CGTCNRLRLMADGSLKVCLF 165 (172)
Q Consensus 146 C~~c~~~~i~~~G~v~pC~~ 165 (172)
|+.-+.+-|+.||+++-+-.
T Consensus 6 ~G~~ht~al~~~g~v~~wG~ 25 (30)
T PF13540_consen 6 CGGYHTCALTSDGEVYCWGD 25 (30)
T ss_dssp EESSEEEEEE-TTEEEEEE-
T ss_pred ecCCEEEEEEcCCCEEEEcC
Confidence 44445567999999987754
No 498
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=26.16 E-value=1.6e+02 Score=24.19 Aligned_cols=45 Identities=18% Similarity=0.324 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHHH-c--CCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCe
Q psy5052 29 GWSRVLAGIDLAVQ-L--GYDNLKVNVVVMKNFNDDEILDFVLLTRDRPID 76 (172)
Q Consensus 29 ~~~~vl~~i~~~~~-~--g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~ 76 (172)
.+.+++++++.... . .+ +|.+.+. ++.+.+++.++++.+.+.|++
T Consensus 184 ~~~~iv~av~~~~~~~~~~~-Pv~vKl~--~~~~~~~~~~ia~~l~~aGad 231 (327)
T cd04738 184 ALRELLTAVKEERNKLGKKV-PLLVKIA--PDLSDEELEDIADVALEHGVD 231 (327)
T ss_pred HHHHHHHHHHHHHhhcccCC-CeEEEeC--CCCCHHHHHHHHHHHHHcCCc
Confidence 45566666666543 1 24 5555543 345666888888888888886
No 499
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=26.15 E-value=3.3e+02 Score=21.56 Aligned_cols=21 Identities=10% Similarity=0.184 Sum_probs=11.9
Q ss_pred HHHHHHhcCCCeEEEEeeeeCCC
Q psy5052 65 DFVLLTRDRPIDVRFIEYMPFSG 87 (172)
Q Consensus 65 ~l~~~a~~~g~~~~~i~~~p~g~ 87 (172)
++..++++.|+. ++.+.|.++
T Consensus 171 ~~~~~~~~~~i~--~~a~spl~~ 191 (275)
T PRK11565 171 QLHAWNATHKIQ--TESWSPLAQ 191 (275)
T ss_pred HHHHHHHHCCCE--EEEEccCCC
Confidence 456666666654 345566653
No 500
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=25.96 E-value=2.1e+02 Score=23.90 Aligned_cols=35 Identities=11% Similarity=0.131 Sum_probs=20.8
Q ss_pred HHHHHcCCCcEEEEEEEecCCCHHHHHHHHHHHhcCCCeE
Q psy5052 38 DLAVQLGYDNLKVNVVVMKNFNDDEILDFVLLTRDRPIDV 77 (172)
Q Consensus 38 ~~~~~~g~~~v~in~v~~~g~N~~ei~~l~~~a~~~g~~~ 77 (172)
.++.++|. .|-++=. +..+|..++++.|++.|+.+
T Consensus 84 ~~aL~aGk-HVL~EKP----la~~Ea~el~~~A~~~g~~l 118 (343)
T TIGR01761 84 RALLARGI-HVLQEHP----LHPRDIQDLLRLAERQGRRY 118 (343)
T ss_pred HHHHhCCC-eEEEcCC----CCHHHHHHHHHHHHHcCCEE
Confidence 34556665 5655533 23467777777777776654
Done!