RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5052
         (172 letters)



>d1tv8a_ c.1.28.3 (A:) Molybdenum cofactor biosynthesis protein A
           MoaA {Staphylococcus aureus [TaxId: 1280]}
          Length = 327

 Score = 96.4 bits (238), Expect = 5e-25
 Identities = 55/169 (32%), Positives = 86/169 (50%), Gaps = 1/169 (0%)

Query: 2   KKAGLDSINISLDTLKPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNFNDD 61
             AGL  IN+SLD +    ++ I  R   +  +            N+KVNVV+ K  NDD
Sbjct: 114 YDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVKVNVVIQKGINDD 173

Query: 62  EILDFVLLTRDRPIDVRFIEYMPFS-GNQWNNTKIMPFSEMLTKIKEAHPDLLTLENAPN 120
           +I+  +   +D+ I++RFIE+M     N W+ +K++   EMLT I++             
Sbjct: 174 QIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFEIDPVEPKYFG 233

Query: 121 DTSKAYKVPEFKGQVGFITSMTEHFCGTCNRLRLMADGSLKVCLFGNTE 169
           + +K Y+  +   Q G ITS+++ FC TC R RL +DG    CLF   +
Sbjct: 234 EVAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLSSDGKFYGCLFATVD 282


>d1vkra_ c.44.2.1 (A:) PTS system mannitol-specific EIICBA
          component {Escherichia coli [TaxId: 562]}
          Length = 97

 Score = 25.1 bits (55), Expect = 2.4
 Identities = 9/65 (13%), Positives = 22/65 (33%), Gaps = 12/65 (18%)

Query: 2  KKAGLDSINISLDTL--KPDKYEFITRRKGWSRVLAGIDLAVQLGYDNLKVNVVVMKNF- 58
          + AGL  I+++   +   P   + +         +   DL  +      +   + + NF 
Sbjct: 29 QDAGLSQISVTNSAINNLPPDVDLV---------ITHRDLTERAMRQVPQAQHISLTNFL 79

Query: 59 NDDEI 63
          +    
Sbjct: 80 DSGLY 84


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.139    0.414 

Gapped
Lambda     K      H
   0.267   0.0586    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 657,870
Number of extensions: 30667
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 5
Length of query: 172
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 93
Effective length of database: 1,322,926
Effective search space: 123032118
Effective search space used: 123032118
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.4 bits)