Query psy5056
Match_columns 182
No_of_seqs 249 out of 1070
Neff 6.1
Searched_HMMs 46136
Date Sat Aug 17 00:36:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5056.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5056hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1113|consensus 99.9 2.3E-22 5.1E-27 176.2 10.5 110 33-167 85-207 (368)
2 KOG1113|consensus 99.8 2.2E-19 4.7E-24 157.6 4.3 129 19-169 185-328 (368)
3 KOG0614|consensus 99.6 3E-16 6.6E-21 144.2 8.4 111 35-167 116-239 (732)
4 KOG0614|consensus 99.6 4.2E-17 9E-22 149.8 0.9 130 19-165 217-361 (732)
5 COG0664 Crp cAMP-binding prote 98.5 1.3E-07 2.9E-12 74.6 4.8 73 76-165 15-88 (214)
6 PRK09392 ftrB transcriptional 98.4 9.3E-07 2E-11 72.9 6.6 73 75-165 21-94 (236)
7 PLN03192 Voltage-dependent pot 98.4 5.4E-07 1.2E-11 87.6 5.8 73 75-165 388-461 (823)
8 PRK11753 DNA-binding transcrip 98.3 8.7E-07 1.9E-11 71.4 5.4 70 75-161 11-81 (211)
9 PF00027 cNMP_binding: Cyclic 98.3 4E-07 8.6E-12 62.8 2.5 63 86-165 1-64 (91)
10 smart00100 cNMP Cyclic nucleot 98.2 2.1E-06 4.6E-11 60.6 5.3 68 75-159 8-76 (120)
11 KOG0498|consensus 98.2 1.4E-06 3.1E-11 83.8 5.6 68 75-160 433-502 (727)
12 cd00038 CAP_ED effector domain 98.2 2.9E-06 6.2E-11 59.8 5.7 73 75-164 8-81 (115)
13 PRK10402 DNA-binding transcrip 98.2 2.2E-06 4.8E-11 70.7 4.4 70 79-165 26-96 (226)
14 PF02197 RIIa: Regulatory subu 98.1 1.1E-06 2.5E-11 54.4 1.7 35 124-158 2-36 (38)
15 PLN02868 acyl-CoA thioesterase 98.1 5.2E-06 1.1E-10 74.9 6.3 71 75-165 22-93 (413)
16 PRK13918 CRP/FNR family transc 98.0 3.9E-06 8.4E-11 67.2 3.4 65 83-165 5-72 (202)
17 KOG0500|consensus 97.9 1.2E-05 2.6E-10 74.2 5.0 65 75-159 321-386 (536)
18 PRK11161 fumarate/nitrate redu 97.8 2.3E-05 4.9E-10 64.4 5.0 45 75-119 27-72 (235)
19 KOG0499|consensus 97.7 3.1E-05 6.6E-10 73.1 3.9 72 75-165 541-616 (815)
20 smart00394 RIIa RIIalpha, Regu 97.6 5.5E-05 1.2E-09 46.5 2.3 34 124-157 2-35 (38)
21 TIGR03697 NtcA_cyano global ni 97.3 0.00016 3.5E-09 57.2 2.9 54 92-162 1-55 (193)
22 PRK09391 fixK transcriptional 97.3 0.00021 4.5E-09 59.2 3.4 36 84-119 38-73 (230)
23 COG2905 Predicted signal-trans 96.2 0.0085 1.8E-07 56.6 5.5 69 75-164 21-90 (610)
24 KOG2968|consensus 95.2 0.009 2E-07 59.1 1.7 74 75-165 499-573 (1158)
25 KOG0501|consensus 90.8 0.28 6.1E-06 47.2 3.9 45 75-119 562-606 (971)
26 KOG3542|consensus 74.6 5.1 0.00011 39.5 4.8 33 85-117 306-338 (1283)
27 KOG2968|consensus 57.8 4.9 0.00011 40.6 1.1 38 81-118 112-149 (1158)
28 PF07697 7TMR-HDED: 7TM-HD ext 54.1 21 0.00046 28.6 4.1 28 75-102 177-206 (222)
29 PF07883 Cupin_2: Cupin domain 44.2 29 0.00063 22.3 2.9 31 87-117 3-34 (71)
30 PF04831 Popeye: Popeye protei 41.2 84 0.0018 25.2 5.5 44 75-118 18-63 (153)
31 PRK11832 putative DNA-binding 26.1 1.1E+02 0.0025 25.5 4.2 35 80-116 18-55 (207)
32 PF14453 ThiS-like: ThiS-like 24.0 1E+02 0.0022 20.6 2.9 26 86-111 23-57 (57)
33 PF00837 T4_deiodinase: Iodoth 21.4 55 0.0012 28.0 1.5 28 97-125 197-224 (237)
No 1
>KOG1113|consensus
Probab=99.88 E-value=2.3e-22 Score=176.23 Aligned_cols=110 Identities=41% Similarity=0.572 Sum_probs=97.9
Q ss_pred cCCcccceeeeeecCCCCCCCCCCCceeCCCCHHHHHHHHhH------------HHHHHHHhhcccceecCCCEEEecCC
Q psy5056 33 RFNTRRKSVYAESYNPEDDEEDEGPKVIYPKSDEQRRSLAES------------DQMNDVIDAMFEKPVEAGDIVIRQGD 100 (182)
Q Consensus 33 ~~~~RR~sVsAE~~~~~~~~~~~~~~~~~pKs~~~~~~I~~a------------~~l~~i~d~m~~~~~~~Ge~II~qGd 100 (182)
....||++||||+++++. ..+...++||+++++++|.++ +++..|+|+|+++.+++|+.||.|||
T Consensus 85 ~~~~RRssV~aE~~tp~~---d~~~~~~~pKd~e~~~~L~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGd 161 (368)
T KOG1113|consen 85 VLFVRRSSVSAEEITPDD---DEFKRKYIPKDDETRRRLEEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGD 161 (368)
T ss_pred ccccccceeeeeecCccc---hhhhhcCCCCCHHHHHHHHHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCC
Confidence 344899999999999886 457788999999999999999 99999999999999999999999999
Q ss_pred CCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhhhhhhccCCCCCCCC
Q psy5056 101 DGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFTKLKLNRRTTPEEPT 167 (182)
Q Consensus 101 ~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFGELall~~~pr~~~~ 167 (182)
.||+||||++|+++|+++.. -|.++.. .+||||||+.+.||+|..
T Consensus 162 eGd~fYvI~kGt~dVyv~~~----------------------~v~~~~~g~sFGElALmyn~PRaATv 207 (368)
T KOG1113|consen 162 EGDNFYVIDKGTFDVYVNGT----------------------YVTTYSPGGSFGELALMYNPPRAATV 207 (368)
T ss_pred cCCcEEEEecceEEEEECCe----------------------EEeeeCCCCchhhhHhhhCCCcccce
Confidence 99999999999999998721 1445556 999999999999999943
No 2
>KOG1113|consensus
Probab=99.77 E-value=2.2e-19 Score=157.62 Aligned_cols=129 Identities=26% Similarity=0.264 Sum_probs=109.7
Q ss_pred ccCCCccCCCCccccCCcccceeeeeec-CCCCCCCCCCCceeCCCCHHHHHHHHhH-------------HHHHHHHhhc
Q psy5056 19 LSLRSTYFQEPPVARFNTRRKSVYAESY-NPEDDEEDEGPKVIYPKSDEQRRSLAES-------------DQMNDVIDAM 84 (182)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~RR~sVsAE~~-~~~~~~~~~~~~~~~pKs~~~~~~I~~a-------------~~l~~i~d~m 84 (182)
+.+.+++|||++++|+.+|.++|-|.+. ..|.+++++|. .++.++...++.|... .++.+|+|++
T Consensus 185 ~~~~g~sFGElALmyn~PRaATv~a~t~~klWgldr~SFr-rIi~~s~~kkrkMy~~~l~s~pil~~l~k~er~kv~dal 263 (368)
T KOG1113|consen 185 TYSPGGSFGELALMYNPPRAATVVAKSLKKLWGLDRTSFR-RIIMKSCIKKRKMYEPFLESVPILESLEKLERAKVADAL 263 (368)
T ss_pred eeCCCCchhhhHhhhCCCcccceeeccccceEEEeeceeE-EEeeccchhhhhhhhhhhhcchhhHHHHHHHHHhhhccc
Confidence 6788999999999999999999999984 48999999884 5566666655555544 8899999999
Q ss_pred ccceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhhhhhhccCCCC
Q psy5056 85 FEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFTKLKLNRRTTP 163 (182)
Q Consensus 85 ~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFGELall~~~pr 163 (182)
..+.|++|+.||.||+.|+.||+|++|+|+|.++. +|. .+++.. |||||+||+.+.||
T Consensus 264 ~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~---~~v------------------~vkl~~~dyfge~al~~~~pr 322 (368)
T KOG1113|consen 264 GTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKR---DGV------------------EVKLKKGDYFGELALLKNLPR 322 (368)
T ss_pred ceeeccCCceEEeccCCcceEEEecccccchhhcc---CCe------------------EEEechhhhcchHHHHhhchh
Confidence 99999999999999999999999999999999875 221 236667 99999999999999
Q ss_pred CCCCCC
Q psy5056 164 EEPTTP 169 (182)
Q Consensus 164 ~~~~~~ 169 (182)
+|...|
T Consensus 323 ~Atv~a 328 (368)
T KOG1113|consen 323 AATVVA 328 (368)
T ss_pred hceeec
Confidence 995443
No 3
>KOG0614|consensus
Probab=99.65 E-value=3e-16 Score=144.15 Aligned_cols=111 Identities=20% Similarity=0.283 Sum_probs=95.4
Q ss_pred CcccceeeeeecCCCCCCCCCCCceeCCCCHHHHHHHHhH------------HHHHHHHhhcccceecCCCEEEecCCCC
Q psy5056 35 NTRRKSVYAESYNPEDDEEDEGPKVIYPKSDEQRRSLAES------------DQMNDVIDAMFEKPVEAGDIVIRQGDDG 102 (182)
Q Consensus 35 ~~RR~sVsAE~~~~~~~~~~~~~~~~~pKs~~~~~~I~~a------------~~l~~i~d~m~~~~~~~Ge~II~qGd~G 102 (182)
+..+++||||+.+.......+++.+.++|+...+++|++| .|+..|++||+++.|.+|.+||+|||+|
T Consensus 116 ~~kkq~vsae~t~~~~~~s~~~~l~~~~Kd~~~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~G 195 (732)
T KOG0614|consen 116 RAKKQAVSAEPTNFTIDPSSSITLPRYNKDVGAKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPG 195 (732)
T ss_pred HHHHhhccccccccccccccccccccccCCccHHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCC
Confidence 5688999999987655444556778899999999999999 8999999999999999999999999999
Q ss_pred CeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhhhhhhccCCCCCCCC
Q psy5056 103 DFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFTKLKLNRRTTPEEPT 167 (182)
Q Consensus 103 d~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFGELall~~~pr~~~~ 167 (182)
+.+||+.+|+++|++... .|.++.. .-|||||.|.|-+|+|+-
T Consensus 196 s~~yV~aeG~~~V~~~g~----------------------ll~~m~~gtvFGELAILynctRtAsV 239 (732)
T KOG0614|consen 196 SHLYVSAEGELQVSREGK----------------------LLGKMGAGTVFGELAILYNCTRTASV 239 (732)
T ss_pred ceEEEeecceEEEeeCCe----------------------eeeccCCchhhhHHHHHhCCcchhhh
Confidence 999999999999997521 1455656 889999999999999853
No 4
>KOG0614|consensus
Probab=99.63 E-value=4.2e-17 Score=149.77 Aligned_cols=130 Identities=21% Similarity=0.232 Sum_probs=111.1
Q ss_pred ccCCCccCCCCccccCCcccceeeeee-cCCCCCCCCCCCcee-----CCCCHHHHHHHHhH--------HHHHHHHhhc
Q psy5056 19 LSLRSTYFQEPPVARFNTRRKSVYAES-YNPEDDEEDEGPKVI-----YPKSDEQRRSLAES--------DQMNDVIDAM 84 (182)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~RR~sVsAE~-~~~~~~~~~~~~~~~-----~pKs~~~~~~I~~a--------~~l~~i~d~m 84 (182)
+-..+..|||++..|+..|-++|.|-+ ...|.+++..| ..+ ..++.+.+++|+++ +-|.+|+|+|
T Consensus 217 ~m~~gtvFGELAILynctRtAsV~alt~~~lWaidR~vF-q~IM~~tg~~r~~~~~~fLrsv~~~q~l~Ee~L~KiaD~l 295 (732)
T KOG0614|consen 217 KMGAGTVFGELAILYNCTRTASVRALTDVRLWAIDREVF-QAIMMRTGLERHEQYMNFLRSVPLFQNLPEELLLKIADVL 295 (732)
T ss_pred ccCCchhhhHHHHHhCCcchhhhhhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHH
Confidence 344667899999999999999998865 57898877655 222 56789999999999 8899999999
Q ss_pred ccceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhhhhhhccCCCC
Q psy5056 85 FEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFTKLKLNRRTTP 163 (182)
Q Consensus 85 ~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFGELall~~~pr 163 (182)
....|.+|++||+||+.||.||||..|+|.|++..... .||..|.++.+ |||||-||+.+..|
T Consensus 296 e~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~----------------~q~~~lr~l~kGd~FGE~al~~edvR 359 (732)
T KOG0614|consen 296 EEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGS----------------TQPQELRTLNKGDYFGERALLGEDVR 359 (732)
T ss_pred HHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCC----------------CchhHHhhccccchhhHHHhhccCcc
Confidence 99999999999999999999999999999999875431 25556778878 99999999999999
Q ss_pred CC
Q psy5056 164 EE 165 (182)
Q Consensus 164 ~~ 165 (182)
+|
T Consensus 360 tA 361 (732)
T KOG0614|consen 360 TA 361 (732)
T ss_pred ch
Confidence 98
No 5
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=98.51 E-value=1.3e-07 Score=74.63 Aligned_cols=73 Identities=19% Similarity=0.251 Sum_probs=57.4
Q ss_pred HHHHHHhhcccceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhhh
Q psy5056 76 QMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFTK 154 (182)
Q Consensus 76 ~l~~i~d~m~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFGE 154 (182)
.+..+...+..+.|++|++|+.|||.++.+|+|.+|.+++++... +|...+ +..+.+ ++||+
T Consensus 15 ~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~--~G~~~~---------------~~~~~~g~~fg~ 77 (214)
T COG0664 15 LLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTE--DGREII---------------LGFLGPGDFFGE 77 (214)
T ss_pred HHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECC--CCcEEE---------------EEEecCCchhhh
Confidence 344455778999999999999999999999999999999998743 343222 223444 99999
Q ss_pred hhhccCCCCCC
Q psy5056 155 LKLNRRTTPEE 165 (182)
Q Consensus 155 Lall~~~pr~~ 165 (182)
++++.+.||.+
T Consensus 78 ~~l~~~~~~~~ 88 (214)
T COG0664 78 LALLGGDPRSA 88 (214)
T ss_pred HHHhcCCCccc
Confidence 99999887775
No 6
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=98.37 E-value=9.3e-07 Score=72.86 Aligned_cols=73 Identities=11% Similarity=0.155 Sum_probs=58.8
Q ss_pred HHHHHHHhhcccceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhh
Q psy5056 75 DQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFT 153 (182)
Q Consensus 75 ~~l~~i~d~m~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFG 153 (182)
+++..+...+..+.|++|+.|++||+..+.+|+|.+|.++++... . |... .+..+.. ++||
T Consensus 21 ~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~--~-~~~~---------------~i~~~~~g~~~g 82 (236)
T PRK09392 21 ATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASS--Q-DRET---------------TLAILRPVSTFI 82 (236)
T ss_pred HHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcC--C-CceE---------------EEEEeCCCchhh
Confidence 788889999999999999999999999999999999999998752 2 2211 1333444 9999
Q ss_pred hhhhccCCCCCC
Q psy5056 154 KLKLNRRTTPEE 165 (182)
Q Consensus 154 ELall~~~pr~~ 165 (182)
+.+++.+.|...
T Consensus 83 ~~~~~~~~~~~~ 94 (236)
T PRK09392 83 LAAVVLDAPYLM 94 (236)
T ss_pred hHHHhCCCCCce
Confidence 999988877654
No 7
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=98.36 E-value=5.4e-07 Score=87.59 Aligned_cols=73 Identities=16% Similarity=0.143 Sum_probs=60.5
Q ss_pred HHHHHHHhhcccceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhh
Q psy5056 75 DQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFT 153 (182)
Q Consensus 75 ~~l~~i~d~m~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFG 153 (182)
+.+..++..|....|.+|+.||.|||.++.+|+|.+|+|++.... .|.+.+ +..+.. +|||
T Consensus 388 ~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~~~---~~~e~~---------------l~~l~~Gd~FG 449 (823)
T PLN03192 388 EILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIIDSE---GEKERV---------------VGTLGCGDIFG 449 (823)
T ss_pred HHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEEecEEEEEEec---CCccee---------------eEEccCCCEec
Confidence 788899999999999999999999999999999999999997532 122111 444555 9999
Q ss_pred hhhhccCCCCCC
Q psy5056 154 KLKLNRRTTPEE 165 (182)
Q Consensus 154 ELall~~~pr~~ 165 (182)
|++++.+.|+.+
T Consensus 450 E~~~l~~~p~~~ 461 (823)
T PLN03192 450 EVGALCCRPQSF 461 (823)
T ss_pred chHHhcCCCCCC
Confidence 999999988875
No 8
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=98.33 E-value=8.7e-07 Score=71.36 Aligned_cols=70 Identities=17% Similarity=0.125 Sum_probs=56.2
Q ss_pred HHHHHHHhhcccceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhh
Q psy5056 75 DQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFT 153 (182)
Q Consensus 75 ~~l~~i~d~m~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFG 153 (182)
+++..+++.+..+.|++|++|+.+|+..+.+|+|.+|.++++... .+|.+. .+..+.+ ++||
T Consensus 11 ~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~--~~g~~~---------------~~~~~~~g~~~g 73 (211)
T PRK11753 11 PTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKD--EEGKEM---------------ILSYLNQGDFIG 73 (211)
T ss_pred HHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEEC--CCCCEE---------------EEEEcCCCCEEe
Confidence 577889999999999999999999999999999999999998753 233311 1334445 9999
Q ss_pred hhhhccCC
Q psy5056 154 KLKLNRRT 161 (182)
Q Consensus 154 ELall~~~ 161 (182)
++.++.+.
T Consensus 74 ~~~~~~~~ 81 (211)
T PRK11753 74 ELGLFEEG 81 (211)
T ss_pred ehhhccCC
Confidence 99988754
No 9
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=98.30 E-value=4e-07 Score=62.85 Aligned_cols=63 Identities=24% Similarity=0.277 Sum_probs=49.2
Q ss_pred cceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhhhhhhccCCCCC
Q psy5056 86 EKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFTKLKLNRRTTPE 164 (182)
Q Consensus 86 ~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFGELall~~~pr~ 164 (182)
+++|++|++|+++|+..+.+|+|.+|.+.+....... . ...+..+.. ++||+++++.+.++.
T Consensus 1 ~~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~--~---------------~~~~~~~~~g~~~g~~~~~~~~~~~ 63 (91)
T PF00027_consen 1 EKTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDG--K---------------EQIIFFLGPGDIFGEIELLTGKPSP 63 (91)
T ss_dssp -EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTS--E---------------EEEEEEEETTEEESGHHHHHTSBBS
T ss_pred CeEECCCCEEEeCCCcCCEEEEEEECceEEEeceecc--e---------------eeeecceeeeccccceeecCCCccE
Confidence 4689999999999999999999999999998764322 1 112445555 999999999887655
Q ss_pred C
Q psy5056 165 E 165 (182)
Q Consensus 165 ~ 165 (182)
.
T Consensus 64 ~ 64 (91)
T PF00027_consen 64 F 64 (91)
T ss_dssp S
T ss_pred E
Confidence 4
No 10
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=98.24 E-value=2.1e-06 Score=60.58 Aligned_cols=68 Identities=32% Similarity=0.460 Sum_probs=54.0
Q ss_pred HHHHHHHhhcccceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhh
Q psy5056 75 DQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFT 153 (182)
Q Consensus 75 ~~l~~i~d~m~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFG 153 (182)
.++..+...+..+.|++|++|+++|+..+.+|+|.+|.+.+..... +|.. ..+..+.+ ++||
T Consensus 8 ~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~--~g~~---------------~~~~~~~~g~~~g 70 (120)
T smart00100 8 EELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLE--DGRE---------------QILGILGPGDFFG 70 (120)
T ss_pred HHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECC--CCce---------------EEEEeecCCceec
Confidence 4677899999999999999999999999999999999999987532 2221 11334444 9999
Q ss_pred hhhhcc
Q psy5056 154 KLKLNR 159 (182)
Q Consensus 154 ELall~ 159 (182)
++.++.
T Consensus 71 ~~~~~~ 76 (120)
T smart00100 71 ELALLT 76 (120)
T ss_pred hhhhcc
Confidence 999883
No 11
>KOG0498|consensus
Probab=98.24 E-value=1.4e-06 Score=83.84 Aligned_cols=68 Identities=19% Similarity=0.200 Sum_probs=56.4
Q ss_pred HHHHHHHhhcccceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhh
Q psy5056 75 DQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFT 153 (182)
Q Consensus 75 ~~l~~i~d~m~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFG 153 (182)
.-|..|++.|+...|.+|++||+|||+.+.||+|.+|.++++....+ |+ ..+..+.. ||||
T Consensus 433 ~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g--~~----------------~~~~~L~~Gd~~G 494 (727)
T KOG0498|consen 433 GLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGG--GF----------------FVVAILGPGDFFG 494 (727)
T ss_pred HHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCC--ce----------------EEEEEecCCCccc
Confidence 78899999999999999999999999999999999999999876432 32 12455666 9999
Q ss_pred -hhhhccC
Q psy5056 154 -KLKLNRR 160 (182)
Q Consensus 154 -ELall~~ 160 (182)
||-....
T Consensus 495 eEl~~~~~ 502 (727)
T KOG0498|consen 495 EELLTWCL 502 (727)
T ss_pred hHHHHHHh
Confidence 8866544
No 12
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=98.23 E-value=2.9e-06 Score=59.78 Aligned_cols=73 Identities=27% Similarity=0.383 Sum_probs=56.2
Q ss_pred HHHHHHHhhcccceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhh
Q psy5056 75 DQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFT 153 (182)
Q Consensus 75 ~~l~~i~d~m~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFG 153 (182)
+++..+++.+..+.|.+|++|+.+|+..+.+|+|.+|.+.+..... +|... .+..+.. ++||
T Consensus 8 ~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~--~g~~~---------------~~~~~~~g~~~g 70 (115)
T cd00038 8 EELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDE--DGREQ---------------IVGFLGPGDLFG 70 (115)
T ss_pred HHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECC--CCcEE---------------EEEecCCccCcC
Confidence 4677888999999999999999999999999999999999987532 33211 1333334 9999
Q ss_pred hhhhccCCCCC
Q psy5056 154 KLKLNRRTTPE 164 (182)
Q Consensus 154 ELall~~~pr~ 164 (182)
...++.+.++.
T Consensus 71 ~~~~~~~~~~~ 81 (115)
T cd00038 71 ELALLGNGPRS 81 (115)
T ss_pred hHHHhcCCCCC
Confidence 99887555443
No 13
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=98.16 E-value=2.2e-06 Score=70.67 Aligned_cols=70 Identities=9% Similarity=0.175 Sum_probs=55.4
Q ss_pred HHHhhcccceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhhhhhh
Q psy5056 79 DVIDAMFEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFTKLKL 157 (182)
Q Consensus 79 ~i~d~m~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFGELal 157 (182)
.|.+.+..+.|++|++|+.|||..+.+|+|.+|.+.++... .+|.+.+ +.-+.+ ++||+.++
T Consensus 26 ~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~--~~G~e~~---------------~~~~~~g~~~G~~~~ 88 (226)
T PRK10402 26 DVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATL--ANGKVSL---------------IDFFAAPCFIGEIEL 88 (226)
T ss_pred HHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEEC--CCCCEee---------------eeecCCCCeEEeehh
Confidence 57788899999999999999999999999999999998753 3454222 222233 99999998
Q ss_pred ccCCCCCC
Q psy5056 158 NRRTTPEE 165 (182)
Q Consensus 158 l~~~pr~~ 165 (182)
+.+.++..
T Consensus 89 ~~~~~~~~ 96 (226)
T PRK10402 89 IDKDHETK 96 (226)
T ss_pred hcCCCCCc
Confidence 87777665
No 14
>PF02197 RIIa: Regulatory subunit of type II PKA R-subunit; InterPro: IPR003117 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. In the absence of cAMP, Protein Kinase A (PKA) exists as an equimolar tetramer of regulatory (R) and catalytic (C) subunits []. In addition to its role as an inhibitor of the C subunit, the R subunit anchors the holoenzyme to specific intracellular locations and prevents the C subunit from entering the nucleus. All R subunits have a conserved domain structure consisting of the N-terminal dimerization domain, inhibitory region, cAMP-binding domain A and cAMP-binding domain B. R subunits interact with C subunits primarily through the inhibitory site. The cAMP-binding domains show extensive sequence similarity and bind cAMP cooperatively. Two types of regulatory (R) subunits exist - types I and I - which differ in molecular weight, sequence, autophosphorylation cabaility, cellular location and tissue distribution. Types I and II were further sub-divided into alpha and beta subtypes, based mainly on sequence similarity. This entry represents types I-alpha, I-beta, II-alpha and II-beta regulatory subunits of PKA proteins. These subunits contain the dimerisation interface and binding site for A-kinase-anchoring proteins (AKAPs).; GO: 0008603 cAMP-dependent protein kinase regulator activity, 0007165 signal transduction; PDB: 2IZY_E 1R2A_A 1L6E_A 2IZX_B 2KYG_A 2EZW_B 3IM4_B 3IM3_A 4F9K_C 2HWN_B ....
Probab=98.14 E-value=1.1e-06 Score=54.41 Aligned_cols=35 Identities=40% Similarity=0.760 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHhhhhcCCCccccchhhhhhhhhhc
Q psy5056 124 ELRDILLEFTISYLLEQPSDVIEYGVDFFTKLKLN 158 (182)
Q Consensus 124 G~~~lL~~~t~~vl~~qp~~l~~~~~dyFGELall 158 (182)
|..+||..++++|++.||.|+..|+++||.+|..-
T Consensus 2 ~l~~lL~~~~~~vl~~qP~Di~~F~a~yF~~L~~~ 36 (38)
T PF02197_consen 2 GLQELLKEFTREVLREQPDDILQFAADYFEKLEKQ 36 (38)
T ss_dssp THHHHHHHHHHHHHHH--S-HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999888653
No 15
>PLN02868 acyl-CoA thioesterase family protein
Probab=98.12 E-value=5.2e-06 Score=74.89 Aligned_cols=71 Identities=18% Similarity=0.276 Sum_probs=56.2
Q ss_pred HHHHHHHhhcccceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhh
Q psy5056 75 DQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFT 153 (182)
Q Consensus 75 ~~l~~i~d~m~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFG 153 (182)
+++..|+..+..+.|++|++|+++||..+.||+|.+|.++|++... +|. . .+..+.+ ++||
T Consensus 22 ~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~--~ge-~---------------~l~~l~~Gd~fG 83 (413)
T PLN02868 22 SSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAE--EES-R---------------PEFLLKRYDYFG 83 (413)
T ss_pred HHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECC--CCc-E---------------EEEEeCCCCEee
Confidence 7889999999999999999999999999999999999999987532 231 1 1344455 9999
Q ss_pred hhhhccCCCCCC
Q psy5056 154 KLKLNRRTTPEE 165 (182)
Q Consensus 154 ELall~~~pr~~ 165 (182)
+. +.+.++.+
T Consensus 84 ~~--l~~~~~~~ 93 (413)
T PLN02868 84 YG--LSGSVHSA 93 (413)
T ss_pred hh--hCCCCccc
Confidence 75 45555554
No 16
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=98.03 E-value=3.9e-06 Score=67.23 Aligned_cols=65 Identities=11% Similarity=0.056 Sum_probs=48.1
Q ss_pred hcccceecCCCEEEecCC--CCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhhhhhhcc
Q psy5056 83 AMFEKPVEAGDIVIRQGD--DGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFTKLKLNR 159 (182)
Q Consensus 83 ~m~~~~~~~Ge~II~qGd--~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFGELall~ 159 (182)
+...+.|++|++|++||| ..+.+|+|.+|.+++++.. ++|.+.+ +.-+.+ ++||+.++.
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~--~~G~e~~---------------l~~~~~Gd~~G~~~~~- 66 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVD--DEGNALT---------------LRYVRPGEYFGEEALA- 66 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEEC--CCCCEEE---------------EEEecCCCeechHHhc-
Confidence 456789999999999999 6799999999999999863 4554322 233344 999997665
Q ss_pred CCCCCC
Q psy5056 160 RTTPEE 165 (182)
Q Consensus 160 ~~pr~~ 165 (182)
..++..
T Consensus 67 ~~~~~~ 72 (202)
T PRK13918 67 GAERAY 72 (202)
T ss_pred CCCCCc
Confidence 345543
No 17
>KOG0500|consensus
Probab=97.93 E-value=1.2e-05 Score=74.17 Aligned_cols=65 Identities=15% Similarity=0.326 Sum_probs=53.5
Q ss_pred HHHHHHHhhcccceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhh
Q psy5056 75 DQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFT 153 (182)
Q Consensus 75 ~~l~~i~d~m~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFG 153 (182)
.-|..++--|++..|.|||+|++.||.|..+|||.+|.+.|.-. +|.. ...++.+ +|||
T Consensus 321 ~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv~d----Dg~t----------------~~~~L~~G~~FG 380 (536)
T KOG0500|consen 321 GLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVVAD----DGVT----------------VFVTLKAGSVFG 380 (536)
T ss_pred hHHHHHHHHhcceeeCCCCeEEecCcccceEEEEEccEEEEEec----CCcE----------------EEEEecCCceee
Confidence 66778888899999999999999999999999999999999753 3320 1455556 9999
Q ss_pred hhhhcc
Q psy5056 154 KLKLNR 159 (182)
Q Consensus 154 ELall~ 159 (182)
|+.++.
T Consensus 381 EisIln 386 (536)
T KOG0500|consen 381 EISILN 386 (536)
T ss_pred eeEEEE
Confidence 998873
No 18
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=97.85 E-value=2.3e-05 Score=64.41 Aligned_cols=45 Identities=18% Similarity=0.363 Sum_probs=36.9
Q ss_pred HHHHHHHhhccc-ceecCCCEEEecCCCCCeEEEEEeCceeeeccc
Q psy5056 75 DQMNDVIDAMFE-KPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKV 119 (182)
Q Consensus 75 ~~l~~i~d~m~~-~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~ 119 (182)
+++..+...+.. +.|++|+.|+++||..+.+|+|.+|.+++++..
T Consensus 27 ~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~ 72 (235)
T PRK11161 27 HELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTIT 72 (235)
T ss_pred HHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEEC
Confidence 344455555543 579999999999999999999999999999764
No 19
>KOG0499|consensus
Probab=97.70 E-value=3.1e-05 Score=73.13 Aligned_cols=72 Identities=19% Similarity=0.314 Sum_probs=59.2
Q ss_pred HHHHHHHhhcccceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhh
Q psy5056 75 DQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFT 153 (182)
Q Consensus 75 ~~l~~i~d~m~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFG 153 (182)
..+..++--+..+.|-+||.|++.||.|..||||..|.|.|... |+|. ..++++++ .-||
T Consensus 541 ~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlGG---p~~~----------------~Vl~tL~~GsVFG 601 (815)
T KOG0499|consen 541 QMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLGG---PDGT----------------KVLVTLKAGSVFG 601 (815)
T ss_pred HHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEecC---CCCC----------------EEEEEecccceee
Confidence 55667777789999999999999999999999999999999853 5553 23778888 9999
Q ss_pred hhhhc---cCCCCCC
Q psy5056 154 KLKLN---RRTTPEE 165 (182)
Q Consensus 154 ELall---~~~pr~~ 165 (182)
|+.|| .++-|+|
T Consensus 602 EISLLaigG~nRRTA 616 (815)
T KOG0499|consen 602 EISLLAIGGGNRRTA 616 (815)
T ss_pred eeeeeeecCCCccch
Confidence 99988 3555665
No 20
>smart00394 RIIa RIIalpha, Regulatory subunit portion of type II PKA R-subunit. RIIalpha, Regulatory subunit portion of type II PKA R-subunit. Contains dimerisation interface and binding site for A-kinase-anchoring proteins (AKAPs).
Probab=97.56 E-value=5.5e-05 Score=46.54 Aligned_cols=34 Identities=35% Similarity=0.700 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHhhhhcCCCccccchhhhhhhhhh
Q psy5056 124 ELRDILLEFTISYLLEQPSDVIEYGVDFFTKLKL 157 (182)
Q Consensus 124 G~~~lL~~~t~~vl~~qp~~l~~~~~dyFGELal 157 (182)
|...+|..+++++++.||.|+..|+++||..|..
T Consensus 2 ~~~~~L~~~~~~vl~~qP~d~~~f~~~yF~kL~~ 35 (38)
T smart00394 2 GLQALLEDLTVEVLRAQPSDLVQFAADYFEKLEE 35 (38)
T ss_pred cHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999977764
No 21
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=97.32 E-value=0.00016 Score=57.16 Aligned_cols=54 Identities=15% Similarity=0.081 Sum_probs=41.3
Q ss_pred CCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhhhhhhccCCC
Q psy5056 92 GDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFTKLKLNRRTT 162 (182)
Q Consensus 92 Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFGELall~~~p 162 (182)
|+.|++|||..+.+|+|.+|.|++++.. ++|.+.+ +.-+.+ ++||+.+++.+.+
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~--~~G~e~~---------------l~~~~~g~~~G~~~~~~~~~ 55 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVY--ESGEEIT---------------VALLRENSVFGVLSLITGHR 55 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeC--CCCcEee---------------eEEccCCCEeeeeeeccCCC
Confidence 7899999999999999999999999763 3443211 333344 9999998887654
No 22
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=97.29 E-value=0.00021 Score=59.24 Aligned_cols=36 Identities=19% Similarity=0.308 Sum_probs=33.3
Q ss_pred cccceecCCCEEEecCCCCCeEEEEEeCceeeeccc
Q psy5056 84 MFEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKV 119 (182)
Q Consensus 84 m~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~ 119 (182)
+..+.|++|++|+.+||..+.||+|.+|.+++++..
T Consensus 38 ~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~ 73 (230)
T PRK09391 38 ASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLL 73 (230)
T ss_pred eeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEEC
Confidence 577899999999999999999999999999998753
No 23
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=96.20 E-value=0.0085 Score=56.62 Aligned_cols=69 Identities=17% Similarity=0.259 Sum_probs=57.0
Q ss_pred HHHHHHHhhcccceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhh
Q psy5056 75 DQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFT 153 (182)
Q Consensus 75 ~~l~~i~d~m~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFG 153 (182)
+++..|.++|....|.+|+.||.-|.+-.++|+|.+|.|+|... +|. | +..|+. |.||
T Consensus 21 eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~~----~g~--v---------------~~~~~~gdlFg 79 (610)
T COG2905 21 EELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRSD----GGE--V---------------LDRLAAGDLFG 79 (610)
T ss_pred HHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEcC----CCe--e---------------eeeeccCcccc
Confidence 78899999999999999999999999999999999999999853 332 1 445666 9999
Q ss_pred hhhhccCCCCC
Q psy5056 154 KLKLNRRTTPE 164 (182)
Q Consensus 154 ELall~~~pr~ 164 (182)
=.+|....+..
T Consensus 80 ~~~l~~~~~~~ 90 (610)
T COG2905 80 FSSLFTELNKQ 90 (610)
T ss_pred chhhcccCCCc
Confidence 99888654433
No 24
>KOG2968|consensus
Probab=95.23 E-value=0.009 Score=59.10 Aligned_cols=74 Identities=22% Similarity=0.285 Sum_probs=57.7
Q ss_pred HHHHHHHhhcccceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhh
Q psy5056 75 DQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFT 153 (182)
Q Consensus 75 ~~l~~i~d~m~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFG 153 (182)
.-+..+=-++.-..+.+|+.+.+|||..|..|||.+|.++-.... +.|..++ +.+|++ |-+|
T Consensus 499 p~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~--~~~k~~i---------------~~EygrGd~iG 561 (1158)
T KOG2968|consen 499 PFLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQ--SGGKKEI---------------VGEYGRGDLIG 561 (1158)
T ss_pred HHHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhc--cCccchh---------------hhhccCcceee
Confidence 445555567788899999999999999999999999998754331 2344334 445667 9999
Q ss_pred hhhhccCCCCCC
Q psy5056 154 KLKLNRRTTPEE 165 (182)
Q Consensus 154 ELall~~~pr~~ 165 (182)
++..+.++||+.
T Consensus 562 ~~E~lt~~~R~t 573 (1158)
T KOG2968|consen 562 EVEMLTKQPRAT 573 (1158)
T ss_pred hhHHhhcCCccc
Confidence 999999999986
No 25
>KOG0501|consensus
Probab=90.81 E-value=0.28 Score=47.19 Aligned_cols=45 Identities=11% Similarity=0.152 Sum_probs=41.0
Q ss_pred HHHHHHHhhcccceecCCCEEEecCCCCCeEEEEEeCceeeeccc
Q psy5056 75 DQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKV 119 (182)
Q Consensus 75 ~~l~~i~d~m~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~ 119 (182)
.-|+.++-.+...+..+|+.|..-|+.-|.+++|.+|+++|.+..
T Consensus 562 GCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQDD 606 (971)
T KOG0501|consen 562 GCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQDD 606 (971)
T ss_pred hhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEeecC
Confidence 678888888888999999999999999999999999999999753
No 26
>KOG3542|consensus
Probab=74.61 E-value=5.1 Score=39.54 Aligned_cols=33 Identities=27% Similarity=0.329 Sum_probs=29.3
Q ss_pred ccceecCCCEEEecCCCCCeEEEEEeCceeeec
Q psy5056 85 FEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLG 117 (182)
Q Consensus 85 ~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k 117 (182)
+.+.-.+|.+|..-|+.=|..|||..|.|+|.+
T Consensus 306 FaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~ 338 (1283)
T KOG3542|consen 306 FAVVEDAGTIVLADGEELDSWSVILNGCVEVVK 338 (1283)
T ss_pred HHHHhhcCeEEecCCcccceeEEEecceEEEec
Confidence 344458999999999999999999999999986
No 27
>KOG2968|consensus
Probab=57.82 E-value=4.9 Score=40.61 Aligned_cols=38 Identities=21% Similarity=0.293 Sum_probs=34.0
Q ss_pred HhhcccceecCCCEEEecCCCCCeEEEEEeCceeeecc
Q psy5056 81 IDAMFEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGK 118 (182)
Q Consensus 81 ~d~m~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~ 118 (182)
.+.+....+.+|++|++-|+.-|..|++.+|..+|.-.
T Consensus 112 ~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~ 149 (1158)
T KOG2968|consen 112 DRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIR 149 (1158)
T ss_pred chhhhhhcccCCceeccCCCCCceEEEEeccceEEEec
Confidence 46677888999999999999999999999999998754
No 28
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=54.13 E-value=21 Score=28.58 Aligned_cols=28 Identities=14% Similarity=0.392 Sum_probs=22.0
Q ss_pred HHHHHHHhhcccce--ecCCCEEEecCCCC
Q psy5056 75 DQMNDVIDAMFEKP--VEAGDIVIRQGDDG 102 (182)
Q Consensus 75 ~~l~~i~d~m~~~~--~~~Ge~II~qGd~G 102 (182)
..+...++...++. +++|+.||++|+.-
T Consensus 177 ~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~V 206 (222)
T PF07697_consen 177 KAREEALASVSPVRGMVKKGEVIVRKGEIV 206 (222)
T ss_pred HHHHHHHhcCCchHhhccCCCEEecCCcEe
Confidence 45556677777777 89999999999863
No 29
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=44.16 E-value=29 Score=22.35 Aligned_cols=31 Identities=13% Similarity=0.154 Sum_probs=23.4
Q ss_pred ceecCCCEEEecCCCCC-eEEEEEeCceeeec
Q psy5056 87 KPVEAGDIVIRQGDDGD-FFYVIESMNRAQLG 117 (182)
Q Consensus 87 ~~~~~Ge~II~qGd~Gd-~fYII~~G~v~V~k 117 (182)
..+.+|..+-..-..+. .+++|.+|++.+..
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~ 34 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV 34 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEEE
Confidence 45677776665555566 99999999999874
No 30
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=41.25 E-value=84 Score=25.21 Aligned_cols=44 Identities=11% Similarity=0.118 Sum_probs=37.4
Q ss_pred HHHHHHHhh-cccceecCCCEEEecCCC-CCeEEEEEeCceeeecc
Q psy5056 75 DQMNDVIDA-MFEKPVEAGDIVIRQGDD-GDFFYVIESMNRAQLGK 118 (182)
Q Consensus 75 ~~l~~i~d~-m~~~~~~~Ge~II~qGd~-Gd~fYII~~G~v~V~k~ 118 (182)
.+.++|+.+ +......+|+.---||.. -|.+=++.+|.+.|+..
T Consensus 18 ~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~ 63 (153)
T PF04831_consen 18 QQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCD 63 (153)
T ss_pred HHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEEC
Confidence 678899998 555777999998888864 69999999999999875
No 31
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=26.12 E-value=1.1e+02 Score=25.54 Aligned_cols=35 Identities=11% Similarity=-0.118 Sum_probs=25.8
Q ss_pred HHhhcccceecCCCEEEe---cCCCCCeEEEEEeCceeee
Q psy5056 80 VIDAMFEKPVEAGDIVIR---QGDDGDFFYVIESMNRAQL 116 (182)
Q Consensus 80 i~d~m~~~~~~~Ge~II~---qGd~Gd~fYII~~G~v~V~ 116 (182)
+.-.-....+.+|..+|. +++ +.+|++.+|.+.+.
T Consensus 18 L~~~g~~~~~~~~~~~i~~~~~~~--~~~~ll~~G~vsir 55 (207)
T PRK11832 18 LSRYGTRFEFNNEKQVIFSSDVNN--EDTFVILEGVISLR 55 (207)
T ss_pred hhccCCeEecCCCcEEeccccCCC--ceEEEEEeceEEEE
Confidence 334455678889999755 333 56999999999994
No 32
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=24.01 E-value=1e+02 Score=20.64 Aligned_cols=26 Identities=31% Similarity=0.532 Sum_probs=18.5
Q ss_pred cceecCCCEEEecC---------CCCCeEEEEEeC
Q psy5056 86 EKPVEAGDIVIRQG---------DDGDFFYVIESM 111 (182)
Q Consensus 86 ~~~~~~Ge~II~qG---------d~Gd~fYII~~G 111 (182)
....+..|++|-.| ..||.+++|..|
T Consensus 23 ~~~k~~~DI~I~NGF~~~~d~~L~e~D~v~~IkkG 57 (57)
T PF14453_consen 23 KESKPDADIVILNGFPTKEDIELKEGDEVFLIKKG 57 (57)
T ss_pred HhhCCCCCEEEEcCcccCCccccCCCCEEEEEeCC
Confidence 34445677888777 358888888876
No 33
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=21.43 E-value=55 Score=28.05 Aligned_cols=28 Identities=14% Similarity=0.058 Sum_probs=21.4
Q ss_pred ecCCCCCeEEEEEeCceeeeccccCchhh
Q psy5056 97 RQGDDGDFFYVIESMNRAQLGKVSVPDEL 125 (182)
Q Consensus 97 ~qGd~Gd~fYII~~G~v~V~k~~~~~~G~ 125 (182)
.=|-.-+.+|||.+|.+ +++...+|.|.
T Consensus 197 ~YgA~PeRlyIi~~gkv-~Y~Gg~GP~~y 224 (237)
T PF00837_consen 197 AYGALPERLYIIQDGKV-VYKGGPGPFGY 224 (237)
T ss_pred HhCCCcceEEEEECCEE-EEeCCCCCCcC
Confidence 34667889999999997 58877677553
Done!