Query psy5056
Match_columns 182
No_of_seqs 249 out of 1070
Neff 6.1
Searched_HMMs 29240
Date Sat Aug 17 00:37:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5056.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5056hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tnp_B CAMP-dependent protein 99.8 2.2E-18 7.6E-23 152.7 9.8 121 28-166 100-233 (416)
2 3idb_B CAMP-dependent protein 99.7 1.7E-16 5.8E-21 120.9 9.2 112 36-165 1-125 (161)
3 4din_B CAMP-dependent protein 99.7 3.1E-17 1.1E-21 143.4 4.5 113 30-166 89-214 (381)
4 3pna_A CAMP-dependent protein 99.6 2.4E-15 8.4E-20 113.9 7.7 108 34-165 1-121 (154)
5 2qcs_B CAMP-dependent protein 99.6 1.9E-15 6.4E-20 124.8 7.4 110 33-166 1-123 (291)
6 3shr_A CGMP-dependent protein 99.3 2.8E-12 9.5E-17 106.5 7.9 88 57-166 23-123 (299)
7 4din_B CAMP-dependent protein 99.3 2.7E-13 9.3E-18 118.3 1.3 131 19-166 193-338 (381)
8 3of1_A CAMP-dependent protein 99.3 5.7E-13 1.9E-17 106.5 0.3 127 18-166 69-210 (246)
9 4f7z_A RAP guanine nucleotide 99.3 8.9E-12 3E-16 120.5 8.6 89 61-165 30-131 (999)
10 1o7f_A CAMP-dependent RAP1 gua 99.2 5.6E-12 1.9E-16 111.0 5.7 110 33-165 9-131 (469)
11 3tnp_B CAMP-dependent protein 99.2 6.5E-13 2.2E-17 117.5 -0.7 132 19-166 212-362 (416)
12 3shr_A CGMP-dependent protein 99.2 2.3E-12 8E-17 107.0 1.5 131 19-166 102-247 (299)
13 3ocp_A PRKG1 protein; serine/t 99.2 4.2E-11 1.4E-15 88.5 7.9 87 57-165 7-106 (139)
14 2qcs_B CAMP-dependent protein 99.2 5.8E-12 2E-16 103.8 1.8 130 19-165 102-246 (291)
15 4f7z_A RAP guanine nucleotide 99.1 4.4E-11 1.5E-15 115.6 7.3 70 75-165 351-422 (999)
16 3of1_A CAMP-dependent protein 99.0 5.7E-10 1.9E-14 88.9 7.2 69 75-165 21-90 (246)
17 3mdp_A Cyclic nucleotide-bindi 99.0 8.3E-10 2.8E-14 80.9 6.0 77 75-165 20-97 (142)
18 2z69_A DNR protein; beta barre 98.9 2.5E-09 8.4E-14 79.3 7.1 74 75-165 26-101 (154)
19 4ava_A Lysine acetyltransferas 98.9 9.4E-10 3.2E-14 92.6 5.1 73 75-165 27-100 (333)
20 1o7f_A CAMP-dependent RAP1 gua 98.9 2.8E-09 9.7E-14 93.7 8.3 85 61-166 325-423 (469)
21 3gyd_A CNMP-BD protein, cyclic 98.9 1.2E-09 3.9E-14 85.6 4.0 74 75-165 53-127 (187)
22 2ptm_A Hyperpolarization-activ 98.9 3.3E-09 1.1E-13 83.1 6.4 71 75-166 85-156 (198)
23 3bpz_A Potassium/sodium hyperp 98.8 3.4E-09 1.2E-13 83.4 5.8 69 75-165 86-155 (202)
24 1wgp_A Probable cyclic nucleot 98.8 4.1E-09 1.4E-13 77.2 5.5 71 75-163 20-96 (137)
25 2d93_A RAP guanine nucleotide 98.8 1.6E-09 5.3E-14 79.7 3.0 69 75-165 30-100 (134)
26 2pqq_A Putative transcriptiona 98.8 3.4E-09 1.2E-13 78.0 4.6 74 75-165 19-93 (149)
27 3ukn_A Novel protein similar t 98.8 4.8E-09 1.7E-13 83.0 5.1 69 75-165 89-160 (212)
28 4f8a_A Potassium voltage-gated 98.8 6.5E-09 2.2E-13 77.7 5.3 69 75-165 41-112 (160)
29 1zyb_A Transcription regulator 98.7 2.8E-09 9.5E-14 85.5 2.5 88 61-165 10-109 (232)
30 3fx3_A Cyclic nucleotide-bindi 98.7 1.5E-08 5.1E-13 80.8 6.1 84 65-165 7-99 (237)
31 1vp6_A CNBD, cyclic-nucleotide 98.7 2.2E-08 7.7E-13 73.1 6.4 67 75-165 25-92 (138)
32 4ev0_A Transcription regulator 98.7 1.6E-08 5.3E-13 79.3 5.1 74 75-165 13-87 (216)
33 3dn7_A Cyclic nucleotide bindi 98.7 9.5E-09 3.2E-13 79.6 3.7 74 75-165 21-96 (194)
34 3e97_A Transcriptional regulat 98.7 5.6E-09 1.9E-13 83.0 2.4 74 75-165 20-94 (231)
35 3dkw_A DNR protein; CRP-FNR, H 98.7 2.3E-08 7.8E-13 78.9 5.9 74 75-165 23-98 (227)
36 3d0s_A Transcriptional regulat 98.7 1.3E-08 4.5E-13 80.7 4.5 74 75-165 20-94 (227)
37 2oz6_A Virulence factor regula 98.7 1.8E-08 6.3E-13 78.4 5.0 74 75-165 4-82 (207)
38 2gau_A Transcriptional regulat 98.7 2.6E-08 9E-13 79.1 6.0 74 75-165 24-98 (232)
39 3ryp_A Catabolite gene activat 98.6 2.4E-08 8.2E-13 77.9 5.2 74 75-165 10-85 (210)
40 3iwz_A CAP-like, catabolite ac 98.6 3.7E-08 1.3E-12 77.8 5.7 74 75-165 25-100 (230)
41 3kcc_A Catabolite gene activat 98.6 3.1E-08 1.1E-12 81.0 5.2 74 75-165 60-135 (260)
42 3dv8_A Transcriptional regulat 98.6 7E-08 2.4E-12 75.7 6.6 74 75-165 17-93 (220)
43 3la7_A Global nitrogen regulat 98.5 7.2E-08 2.5E-12 77.8 3.4 71 75-162 31-105 (243)
44 2bgc_A PRFA; bacterial infecti 98.5 1.3E-07 4.4E-12 76.0 4.6 72 75-163 7-80 (238)
45 3cf6_E RAP guanine nucleotide 98.4 2.4E-07 8E-12 87.4 6.5 84 61-165 20-117 (694)
46 3b02_A Transcriptional regulat 98.4 2.1E-07 7.2E-12 72.4 4.2 61 87-165 2-63 (195)
47 1o5l_A Transcriptional regulat 98.4 1.6E-07 5.5E-12 74.2 3.3 72 77-165 15-88 (213)
48 2izx_A CAMP-dependent protein 98.2 5.7E-07 2E-11 55.4 2.7 37 121-157 3-39 (41)
49 2zcw_A TTHA1359, transcription 98.2 7.4E-07 2.5E-11 69.5 3.3 67 81-165 2-71 (202)
50 3e6c_C CPRK, cyclic nucleotide 98.1 6.8E-07 2.3E-11 72.1 2.3 68 75-161 23-91 (250)
51 2kyg_A CAMP-dependent protein 98.1 1.5E-06 5.1E-11 55.9 3.1 39 120-158 10-48 (50)
52 2izy_A CAMP-dependent protein 98.1 1.9E-06 6.6E-11 56.4 2.7 40 120-159 5-44 (54)
53 3beh_A MLL3241 protein; transm 98.0 5.9E-07 2E-11 77.0 0.0 67 75-165 242-309 (355)
54 2fmy_A COOA, carbon monoxide o 98.0 1.8E-06 6.3E-11 67.9 1.9 42 75-116 18-59 (220)
55 1ft9_A Carbon monoxide oxidati 97.8 4.3E-06 1.5E-10 66.0 1.4 42 75-116 14-55 (222)
56 4f9k_A CAMP-dependent protein 97.1 9.4E-05 3.2E-09 53.4 0.7 37 123-159 47-83 (95)
57 3fjs_A Uncharacterized protein 32.5 60 0.002 22.3 4.3 35 84-118 38-72 (114)
58 3rns_A Cupin 2 conserved barre 26.2 82 0.0028 24.5 4.6 35 84-118 39-73 (227)
No 1
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.75 E-value=2.2e-18 Score=152.69 Aligned_cols=121 Identities=44% Similarity=0.626 Sum_probs=94.3
Q ss_pred CCccccCCcccceeeeeecCCCCCCCCCCCceeCCCCHHHHHHHHhH------------HHHHHHHhhcccceecCCCEE
Q psy5056 28 EPPVARFNTRRKSVYAESYNPEDDEEDEGPKVIYPKSDEQRRSLAES------------DQMNDVIDAMFEKPVEAGDIV 95 (182)
Q Consensus 28 ~~~~~~~~~RR~sVsAE~~~~~~~~~~~~~~~~~pKs~~~~~~I~~a------------~~l~~i~d~m~~~~~~~Ge~I 95 (182)
++|+.++.+||.+||||+++++..+...+.++++||+++++++|.++ .++..|+++|..+.|++|++|
T Consensus 100 ~~~~~~~~~rr~~v~ae~~~~~~~~~~~~~~~~~~ks~~~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I 179 (416)
T 3tnp_B 100 NAPVINRFTRRASVCAEAYNPDEEEDDAESRIIHPKTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHV 179 (416)
T ss_dssp -----CTTSCCCCEECCCCCCC--------CCCCCCCHHHHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEE
T ss_pred CCCCcccCCCccEEeccccCCcccccccccccCCCCCHHHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEE
Confidence 35556667899999999999887655667788999999999999988 899999999999999999999
Q ss_pred EecCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhhhhhhccCCCCCCC
Q psy5056 96 IRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFTKLKLNRRTTPEEP 166 (182)
Q Consensus 96 I~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFGELall~~~pr~~~ 166 (182)
|+|||.|+.||||.+|.|+|++. .+|.. ..+..+.. ++|||++++.+.||++.
T Consensus 180 ~~qGd~~d~~YiI~sG~v~v~~~---~~G~~---------------~~v~~l~~G~~fGe~all~~~pr~at 233 (416)
T 3tnp_B 180 IDQGDDGDNFYVIDRGTFDIYVK---CDGVG---------------RCVGNYDNRGSFGELALMYNTPKAAT 233 (416)
T ss_dssp ECTTSCCCEEEEEEECEEEEEEE---CSSCE---------------EEEEEEESCCEECGGGGTSCCCCSSE
T ss_pred EeCCCCCceEEEEEeeEEEEEEe---cCCCE---------------EEEEEecCCCEEeeHHHhcCCCcccE
Confidence 99999999999999999999973 23321 11445555 99999999999999873
No 2
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.67 E-value=1.7e-16 Score=120.91 Aligned_cols=112 Identities=46% Similarity=0.658 Sum_probs=89.7
Q ss_pred cccceeeeeecCCCCCCCCCCCceeCCCCHHHHHHHHhH------------HHHHHHHhhcccceecCCCEEEecCCCCC
Q psy5056 36 TRRKSVYAESYNPEDDEEDEGPKVIYPKSDEQRRSLAES------------DQMNDVIDAMFEKPVEAGDIVIRQGDDGD 103 (182)
Q Consensus 36 ~RR~sVsAE~~~~~~~~~~~~~~~~~pKs~~~~~~I~~a------------~~l~~i~d~m~~~~~~~Ge~II~qGd~Gd 103 (182)
.||++||||+++++..+...+.++..+|+.++++.+.+. .++..|+..+..+.|++|++|++||+.++
T Consensus 1 ~rr~~v~ae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~ 80 (161)
T 3idb_B 1 TRRASVCAEAYNPDEEEDDAESRIIHPKTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGD 80 (161)
T ss_dssp CCCCCEECCCCCTTC--------CCCCCCHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCC
T ss_pred CCceeEEeccCCccchhcccCCcccCCCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCc
Confidence 489999999999988777778888999999999988776 89999999999999999999999999999
Q ss_pred eEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhhhhhhccCCCCCC
Q psy5056 104 FFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFTKLKLNRRTTPEE 165 (182)
Q Consensus 104 ~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFGELall~~~pr~~ 165 (182)
.+|+|.+|.++++.. .+|.. ..+..+.. ++||+++++.+.++.+
T Consensus 81 ~~y~i~~G~v~~~~~---~~g~~---------------~~~~~~~~G~~fGe~~~~~~~~~~~ 125 (161)
T 3idb_B 81 NFYVIDRGTFDIYVK---CDGVG---------------RCVGNYDNRGSFGELALMYNTPRAA 125 (161)
T ss_dssp EEEEEEESEEEEEEE---ETTEE---------------EEEEEEESCCEECGGGGTCCCCCSS
T ss_pred EEEEEEeCEEEEEEc---CCCCe---------------EEEEEcCCCCEechHHHHcCCCccc
Confidence 999999999999972 23321 11444555 9999999999988875
No 3
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.66 E-value=3.1e-17 Score=143.35 Aligned_cols=113 Identities=31% Similarity=0.399 Sum_probs=95.7
Q ss_pred ccccCCcccceeeeeecCCCCCCCCCCCceeCCCCHHHHHHHHhH------------HHHHHHHhhcccceecCCCEEEe
Q psy5056 30 PVARFNTRRKSVYAESYNPEDDEEDEGPKVIYPKSDEQRRSLAES------------DQMNDVIDAMFEKPVEAGDIVIR 97 (182)
Q Consensus 30 ~~~~~~~RR~sVsAE~~~~~~~~~~~~~~~~~pKs~~~~~~I~~a------------~~l~~i~d~m~~~~~~~Ge~II~ 97 (182)
++...+.||.+||||+++++.. ..+.++++||++++++.|.++ +++..|+++|..+.|++|++||+
T Consensus 89 ~~~~~~~~r~~vsae~~~~~~~--~~~~~~~~~ks~~~~~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~ 166 (381)
T 4din_B 89 PVVKARRRRGGVSAEVYTEEDA--VSYVRKVIPKDYKTMTALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQ 166 (381)
T ss_dssp CCCCSSCCCCCCBCCCCCHHHH--HTCCCCCCCCCHHHHHHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSC
T ss_pred cccccCCCCCeEecccCCcccc--ccccCCCCCCCHHHHHHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEe
Confidence 3445678999999999876543 256678999999999998887 89999999999999999999999
Q ss_pred cCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhhhhhhccCCCCCCC
Q psy5056 98 QGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFTKLKLNRRTTPEEP 166 (182)
Q Consensus 98 qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFGELall~~~pr~~~ 166 (182)
|||.|+.||+|.+|.+++++.. . .+..+.. ++|||++++.+.||++.
T Consensus 167 ~Gd~~~~~yiI~~G~v~v~~~~-----~-----------------~v~~l~~G~~fGe~all~~~~r~at 214 (381)
T 4din_B 167 QGNEGDNFYVVDQGEVDVYVNG-----E-----------------WVTNISEGGSFGELALIYGTPRAAT 214 (381)
T ss_dssp TTSBCCEEEECSSSEEEEEETT-----E-----------------EEEEEESSCCBCGGGGTSCCBCSSE
T ss_pred CCCCCCeEEEEEeeEEEEEECC-----e-----------------EeeeCCCCCEEEchHHhcCCCcceE
Confidence 9999999999999999999631 1 1444555 99999999999999863
No 4
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.59 E-value=2.4e-15 Score=113.87 Aligned_cols=108 Identities=31% Similarity=0.410 Sum_probs=75.1
Q ss_pred CCcccceeeeeecCCCCCCCCCCCceeCCCCHHHHHHHHhH------------HHHHHHHhhcccceecCCCEEEecCCC
Q psy5056 34 FNTRRKSVYAESYNPEDDEEDEGPKVIYPKSDEQRRSLAES------------DQMNDVIDAMFEKPVEAGDIVIRQGDD 101 (182)
Q Consensus 34 ~~~RR~sVsAE~~~~~~~~~~~~~~~~~pKs~~~~~~I~~a------------~~l~~i~d~m~~~~~~~Ge~II~qGd~ 101 (182)
+++||.+||||++.++.. ..+.+++++|+.++++.+.+. +++..|+..+..+.|++|++|++||+.
T Consensus 1 ~~~~~~~vs~e~~~~~~~--~~~~~~~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~ 78 (154)
T 3pna_A 1 GRRRRGAISAEVYTEEDA--ASYVRKVIPKDYKTMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDE 78 (154)
T ss_dssp -----------------------CCCCCCCCHHHHHHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSC
T ss_pred CCcccccccccccCCCCc--cccccccCCCCHHHHHHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCC
Confidence 367999999999886653 457788899999998887665 899999999999999999999999999
Q ss_pred CCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhhhhhhccCCCCCC
Q psy5056 102 GDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFTKLKLNRRTTPEE 165 (182)
Q Consensus 102 Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFGELall~~~pr~~ 165 (182)
++.+|+|.+|.+++++. |. .+..+.. ++||+++++.+.++.+
T Consensus 79 ~~~~y~i~~G~v~~~~~-----~~-----------------~~~~~~~G~~fGe~~~~~~~~~~~ 121 (154)
T 3pna_A 79 GDNFYVIDQGEMDVYVN-----NE-----------------WATSVGEGGSFGELALIYGTPRAA 121 (154)
T ss_dssp CCEEEEEEESCEEEEET-----TE-----------------EEEEECTTCEECCHHHHHCCCCSS
T ss_pred CCeEEEEEecEEEEEEC-----CE-----------------EEEEecCCCEeeehHhhcCCCcce
Confidence 99999999999999863 11 1344555 9999999999988865
No 5
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.58 E-value=1.9e-15 Score=124.83 Aligned_cols=110 Identities=31% Similarity=0.412 Sum_probs=93.0
Q ss_pred cCCcccceeeeeecCCCCCCCCCCCceeCCCCHHHHHHHHhH------------HHHHHHHhhcccceecCCCEEEecCC
Q psy5056 33 RFNTRRKSVYAESYNPEDDEEDEGPKVIYPKSDEQRRSLAES------------DQMNDVIDAMFEKPVEAGDIVIRQGD 100 (182)
Q Consensus 33 ~~~~RR~sVsAE~~~~~~~~~~~~~~~~~pKs~~~~~~I~~a------------~~l~~i~d~m~~~~~~~Ge~II~qGd 100 (182)
++++||.+||||++.+.. ...+.+++++|+.++++.|.+. +++..|+..|..+.|++|++|++|||
T Consensus 1 ~~~~~~~~~~~e~~~~~~--~~~~~~~~~~ks~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~ 78 (291)
T 2qcs_B 1 KGRRRRGAISAEVYTEED--AASYVRKVIPKDYKTMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGD 78 (291)
T ss_dssp CCSCCCCCEECCCCCHHH--HHTCCCCCCCCCHHHHHHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTS
T ss_pred CCCcCCceeeeeccCCcc--ccccCCCCCCCCHHHHHHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCC
Confidence 467899999999987543 2357788999999999999887 88999999999999999999999999
Q ss_pred CCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhhhhhhccCCCCCCC
Q psy5056 101 DGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFTKLKLNRRTTPEEP 166 (182)
Q Consensus 101 ~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFGELall~~~pr~~~ 166 (182)
.++.||+|.+|.++++.. |. .+..+.. ++|||++++.+.||.+.
T Consensus 79 ~~~~~y~i~~G~v~~~~~-----g~-----------------~~~~l~~G~~fGe~~l~~~~~~~~t 123 (291)
T 2qcs_B 79 EGDNFYVIDQGEMDVYVN-----NE-----------------WATSVGEGGSFGELALIYGTPRAAT 123 (291)
T ss_dssp BCCEEEEEEECCEEEEET-----TE-----------------EEEEECTTCEECGGGGTCCCBCSSE
T ss_pred CCceEEEEeeeEEEEEEC-----Ce-----------------EEEEcCCCCccchHHHhcCCCCceE
Confidence 999999999999999872 21 1344445 99999999999998763
No 6
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.32 E-value=2.8e-12 Score=106.49 Aligned_cols=88 Identities=19% Similarity=0.354 Sum_probs=76.4
Q ss_pred CceeCCCCHHHHHHHHhH------------HHHHHHHhhcccceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchh
Q psy5056 57 PKVIYPKSDEQRRSLAES------------DQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDE 124 (182)
Q Consensus 57 ~~~~~pKs~~~~~~I~~a------------~~l~~i~d~m~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G 124 (182)
..+.++|+++++.+|.++ +++..|++.|..+.|++|++|++|||.++.||+|.+|.|++++..
T Consensus 23 ~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~g----- 97 (299)
T 3shr_A 23 AFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEG----- 97 (299)
T ss_dssp CCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEETT-----
T ss_pred CCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEECC-----
Confidence 357789999999999887 899999999999999999999999999999999999999997531
Q ss_pred hHHHHHHHHHhhhhcCCCccccchh-hhhhhhhhccCCCCCCC
Q psy5056 125 LRDILLEFTISYLLEQPSDVIEYGV-DFFTKLKLNRRTTPEEP 166 (182)
Q Consensus 125 ~~~lL~~~t~~vl~~qp~~l~~~~~-dyFGELall~~~pr~~~ 166 (182)
. .+..+.. ++|||++++.+.||++.
T Consensus 98 ~-----------------~~~~~~~G~~fGe~~ll~~~~~~~t 123 (299)
T 3shr_A 98 V-----------------KLCTMGPGKVFGELAILYNCTRTAT 123 (299)
T ss_dssp E-----------------EEEEECTTCEESCSGGGTTTBCCSE
T ss_pred E-----------------EEEEeCCCCeeeHhHHhcCCCCCcE
Confidence 1 1344545 99999999999999863
No 7
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.31 E-value=2.7e-13 Score=118.30 Aligned_cols=131 Identities=22% Similarity=0.209 Sum_probs=92.8
Q ss_pred ccCCCccCCCCccccCCcccceeeeeec-CCCCCCCCCCCceeCCCCHHHHH-----HHHhH--------HHHHHHHhhc
Q psy5056 19 LSLRSTYFQEPPVARFNTRRKSVYAESY-NPEDDEEDEGPKVIYPKSDEQRR-----SLAES--------DQMNDVIDAM 84 (182)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~RR~sVsAE~~-~~~~~~~~~~~~~~~pKs~~~~~-----~I~~a--------~~l~~i~d~m 84 (182)
.-..|+.||+.++.++.+|..++.|.+. ..|.++...+ ..+..+++..+. ++... .++..+++++
T Consensus 193 ~l~~G~~fGe~all~~~~r~atv~A~~~~~l~~i~~~~f-~~ll~~~~~~~~~~~~~~L~~v~~f~~Ls~~el~~l~~~~ 271 (381)
T 4din_B 193 NISEGGSFGELALIYGTPRAATVKAKTDLKLWGIDRDSY-RRILMGSTLRKRKMYEEFLSKVSILESLEKWERLTVADAL 271 (381)
T ss_dssp EEESSCCBCGGGGTSCCBCSSEEEESSSCEEEEEEHHHH-HHHHHHHHHHHHHHHHHHHHHCSTTTTCCTTHHHHHHTTC
T ss_pred eCCCCCEEEchHHhcCCCcceEEEECCCEEEEEEchHHH-HHhhhhhhHHHHHHHHHHhhhhHHHHhccHHHHHHHHHhh
Confidence 4567889999999998888888887652 2232222222 111222222222 22221 7889999999
Q ss_pred ccceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhhhhhhccCCCC
Q psy5056 85 FEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFTKLKLNRRTTP 163 (182)
Q Consensus 85 ~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFGELall~~~pr 163 (182)
..+.|.+|++|++||+.++.||+|.+|.++|++.... |. ....+..+.. +||||++++.+.||
T Consensus 272 ~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~--~~--------------~~~~v~~l~~Gd~fGe~all~~~~r 335 (381)
T 4din_B 272 EPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSP--NE--------------EYVEVGRLGPSDYFGEIALLLNRPR 335 (381)
T ss_dssp BCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSS--SS--------------CCCEEEEECTTCEECTTGGGSCCBC
T ss_pred hhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCC--CC--------------ceEEEEEeCCCCEechHHHhCCCCc
Confidence 9999999999999999999999999999999986422 21 1222556666 99999999999999
Q ss_pred CCC
Q psy5056 164 EEP 166 (182)
Q Consensus 164 ~~~ 166 (182)
++.
T Consensus 336 ~~t 338 (381)
T 4din_B 336 AAT 338 (381)
T ss_dssp SSE
T ss_pred eeE
Confidence 874
No 8
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.26 E-value=5.7e-13 Score=106.50 Aligned_cols=127 Identities=21% Similarity=0.170 Sum_probs=90.1
Q ss_pred cccCCCccCCCCccccCCcccceeeeeec-CCCCCCCCCCCceeCCCCHHHH-----HHHHhH--------HHHHHHHhh
Q psy5056 18 HLSLRSTYFQEPPVARFNTRRKSVYAESY-NPEDDEEDEGPKVIYPKSDEQR-----RSLAES--------DQMNDVIDA 83 (182)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~RR~sVsAE~~-~~~~~~~~~~~~~~~pKs~~~~-----~~I~~a--------~~l~~i~d~ 83 (182)
..-..++.||+.++..+.+|..++.|.+. ..+..+...+ .......+..+ .++... .++..+++.
T Consensus 69 ~~~~~g~~fGe~~l~~~~~~~~tv~a~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~ 147 (246)
T 3of1_A 69 NSSGPGSSFGELALMYNSPRAATVVATSDCLLWALDRLTF-RKILLGSSFKKRLMYDDLLKSMPVLKSLTTYDRAKLADA 147 (246)
T ss_dssp EEECTTCEECHHHHHHTCCCSSEEEESSCEEEEEEEHHHH-HHTTTTTTSHHHHHSHHHHHHCGGGTTCCHHHHHHHHHT
T ss_pred EecCCCCeeehhHHhcCCCCCcEEEECCCeEEEEEEhHHH-HHHHHHhHHHHHHHHHHHHhhChhhhcCCHHHHHHHHHh
Confidence 45567889999998888778777777542 2222211111 11222222222 222222 889999999
Q ss_pred cccceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhhhhhhccCCC
Q psy5056 84 MFEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFTKLKLNRRTT 162 (182)
Q Consensus 84 m~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFGELall~~~p 162 (182)
+..+.|++|++|++||+.++.||+|.+|.++|++... + .+..+.. +||||++++.+.|
T Consensus 148 ~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~---~------------------~~~~l~~g~~fGe~~~~~~~~ 206 (246)
T 3of1_A 148 LDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQ---G------------------VINKLKDHDYFGEVALLNDLP 206 (246)
T ss_dssp CEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTT---E------------------EEEEEETTCEECHHHHHHTCB
T ss_pred hheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCC---c------------------eEEEcCCCCcccHHHHhCCCC
Confidence 9999999999999999999999999999999987532 1 1455556 9999999999999
Q ss_pred CCCC
Q psy5056 163 PEEP 166 (182)
Q Consensus 163 r~~~ 166 (182)
|++.
T Consensus 207 ~~~~ 210 (246)
T 3of1_A 207 RQAT 210 (246)
T ss_dssp CSSE
T ss_pred cccE
Confidence 9863
No 9
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.26 E-value=8.9e-12 Score=120.47 Aligned_cols=89 Identities=15% Similarity=0.215 Sum_probs=76.1
Q ss_pred CCCCHHHHHHHHhH------------HHHHHHHhhcccceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHH
Q psy5056 61 YPKSDEQRRSLAES------------DQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDI 128 (182)
Q Consensus 61 ~pKs~~~~~~I~~a------------~~l~~i~d~m~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~l 128 (182)
..||+++.+.|.++ .++..|+.+|....|++|++||+|||.||+||||.+|.|+|+.......+
T Consensus 30 ~~Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~~~~---- 105 (999)
T 4f7z_A 30 LERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQ---- 105 (999)
T ss_dssp SSCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSSCTT----
T ss_pred ccCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCCCCC----
Confidence 57899999999977 89999999999999999999999999999999999999999875333222
Q ss_pred HHHHHHhhhhcCCCccccchh-hhhhhhhhccCCCCCC
Q psy5056 129 LLEFTISYLLEQPSDVIEYGV-DFFTKLKLNRRTTPEE 165 (182)
Q Consensus 129 L~~~t~~vl~~qp~~l~~~~~-dyFGELall~~~pr~~ 165 (182)
....+..+.. ++||| +++.+.||+|
T Consensus 106 -----------~~~~v~~l~~G~sFGE-all~n~pRta 131 (999)
T 4f7z_A 106 -----------DAVTICTLGIGTAFGE-SILDNTPRHA 131 (999)
T ss_dssp -----------SCEEEEEEETTCEECG-GGGGTCCCSS
T ss_pred -----------CceeEEEecCCcchhh-hhccCCCcce
Confidence 1223667777 99999 9999999997
No 10
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.24 E-value=5.6e-12 Score=111.02 Aligned_cols=110 Identities=15% Similarity=0.114 Sum_probs=80.5
Q ss_pred cCCcccceeeeeecCCCCCCCCCCCceeCCCCHHHHHHHHhH------------HHHHHHHhhcccceecCCCEEEecCC
Q psy5056 33 RFNTRRKSVYAESYNPEDDEEDEGPKVIYPKSDEQRRSLAES------------DQMNDVIDAMFEKPVEAGDIVIRQGD 100 (182)
Q Consensus 33 ~~~~RR~sVsAE~~~~~~~~~~~~~~~~~pKs~~~~~~I~~a------------~~l~~i~d~m~~~~~~~Ge~II~qGd 100 (182)
....||.++++|.... ...+.++|++++...|.+. .++..|+..|..+.|++|++|++|||
T Consensus 9 ~~~~~~~~~~~e~~~~-------l~~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd 81 (469)
T 1o7f_A 9 AAHAAHSQSSAEWIAC-------LDKRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGD 81 (469)
T ss_dssp ----------CHHHHH-------HTSCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTS
T ss_pred hhccccccCcHHHHHH-------hcCChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCC
Confidence 4467999999998742 2245678999999998877 88999999999999999999999999
Q ss_pred CCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhhhhhhccCCCCCC
Q psy5056 101 DGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFTKLKLNRRTTPEE 165 (182)
Q Consensus 101 ~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFGELall~~~pr~~ 165 (182)
.++.||+|.+|.+++++... +|.. +...+..+.. ++|||++ +.+.|+++
T Consensus 82 ~~~~~y~i~~G~v~v~~~~~--~g~~-------------~~~~~~~~~~G~~fGe~~-l~~~~~~~ 131 (469)
T 1o7f_A 82 IGTNWYAVLAGSLDVKVSET--SSHQ-------------DAVTICTLGIGTAFGESI-LDNTPRHA 131 (469)
T ss_dssp BCCEEEEEEESCEEEEECSS--SCGG-------------GCEEEEEECTTCEECGGG-GGTCBCSS
T ss_pred CCCcEEEEEeeEEEEEEecC--CCCC-------------cceEEEEccCCCCcchhh-hCCCCccc
Confidence 99999999999999997643 3321 0112445555 9999999 99988876
No 11
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.23 E-value=6.5e-13 Score=117.55 Aligned_cols=132 Identities=17% Similarity=0.134 Sum_probs=88.5
Q ss_pred ccCCCccCCCCccccCCcccceeeeeec-CCCCCCCCCCCceeCCCCHHHHH-----HHHhH--------HHHHHHHhhc
Q psy5056 19 LSLRSTYFQEPPVARFNTRRKSVYAESY-NPEDDEEDEGPKVIYPKSDEQRR-----SLAES--------DQMNDVIDAM 84 (182)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~RR~sVsAE~~-~~~~~~~~~~~~~~~pKs~~~~~-----~I~~a--------~~l~~i~d~m 84 (182)
.-..++.||+.+++++.+|..+|.|.+. ..|.++...|. .++.+.+..+. ++... .++..|++.|
T Consensus 212 ~l~~G~~fGe~all~~~pr~atv~A~~d~~l~~i~r~~f~-~ll~~~~~~~~~~~~~~L~~v~lf~~Ls~~el~~L~~~l 290 (416)
T 3tnp_B 212 NYDNRGSFGELALMYNTPKAATITATSPGALWGLDRVTFR-RIIVKNNAKKRKMYESFIESLPFLKSLEVSERLKVVDVI 290 (416)
T ss_dssp EEESCCEECGGGGTSCCCCSSEEEESSSEEEEEEEHHHHH-HHHHHHHHHHSSSSSSSGGGCGGGTTCCHHHHHHHHHHC
T ss_pred EecCCCEEeeHHHhcCCCcccEEEEccCeEEEEEeehhhh-hhhhcchhHHHHHHHHHHhhchHhhcCCHHHHHHHHhhc
Confidence 4567889999999999888888888542 12221111110 00111111100 00000 8899999999
Q ss_pred ccceecCCCEEEecCCCCCeEEEEEeCceeeeccccCc----hhhHHHHHHHHHhhhhcCCCccccchh-hhhhhhhhcc
Q psy5056 85 FEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVP----DELRDILLEFTISYLLEQPSDVIEYGV-DFFTKLKLNR 159 (182)
Q Consensus 85 ~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~----~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFGELall~ 159 (182)
..+.|.+|++|++||+.++.||||.+|.++|++..... .|. ...+..+.. +||||++++.
T Consensus 291 ~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~---------------~~~l~~l~~G~~fGE~all~ 355 (416)
T 3tnp_B 291 GTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENG---------------AVEIARCFRGQYFGELALVT 355 (416)
T ss_dssp EEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC---------------------------CEEEEECTTCEESGGGGTC
T ss_pred eEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCc---------------eeEEEEeCCCCEecHHHHhC
Confidence 99999999999999999999999999999999764320 121 222556666 9999999999
Q ss_pred CCCCCCC
Q psy5056 160 RTTPEEP 166 (182)
Q Consensus 160 ~~pr~~~ 166 (182)
+.||++.
T Consensus 356 ~~~r~~t 362 (416)
T 3tnp_B 356 NKPRAAS 362 (416)
T ss_dssp CSCCSSE
T ss_pred CCCceeE
Confidence 9999863
No 12
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.21 E-value=2.3e-12 Score=106.95 Aligned_cols=131 Identities=21% Similarity=0.204 Sum_probs=91.0
Q ss_pred ccCCCccCCCCccccCCcccceeeeeec-CCCCCCCCCCCceeCCCCHH-----HHHHHHhH--------HHHHHHHhhc
Q psy5056 19 LSLRSTYFQEPPVARFNTRRKSVYAESY-NPEDDEEDEGPKVIYPKSDE-----QRRSLAES--------DQMNDVIDAM 84 (182)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~RR~sVsAE~~-~~~~~~~~~~~~~~~pKs~~-----~~~~I~~a--------~~l~~i~d~m 84 (182)
.-..++.||+.++..+.+|..+|.|.+. ..|.++...+. .+..+.+. ...+|... .++..++..+
T Consensus 102 ~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~i~~~~~~-~i~~~~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~ 180 (299)
T 3shr_A 102 TMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQ-TIMMRTGLIKHTEYMEFLKSVPTFQSLPEEILSKLADVL 180 (299)
T ss_dssp EECTTCEESCSGGGTTTBCCSEEEESSCEEEEEECHHHHH-HHHHHHHHHHHHHHHHHHTTSHHHHHSCHHHHHHHTTTC
T ss_pred EeCCCCeeeHhHHhcCCCCCcEEEEcCCeEEEEEcHHHHH-HHhhHhHHHHHHHHHHHHhhCHHhhhCCHHHHHHHHHhc
Confidence 4567889999999988888888887642 22222221111 11111111 11112221 8899999999
Q ss_pred ccceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhhhhhhccCCCC
Q psy5056 85 FEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFTKLKLNRRTTP 163 (182)
Q Consensus 85 ~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFGELall~~~pr 163 (182)
..+.|.+|++|++|||.++.||+|.+|.+++++... ++|. ...+..+.. ++|||++++.+.||
T Consensus 181 ~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~-~~g~---------------~~~~~~l~~G~~fGe~~ll~~~~~ 244 (299)
T 3shr_A 181 EETHYENGEYIIRQGARGDTFFIISKGKVNVTREDS-PNED---------------PVFLRTLGKGDWFGEKALQGEDVR 244 (299)
T ss_dssp EEEEECTTCEEECTTCEECEEEEEEESEEEEEECCS-SSCC---------------CEEEEEEETTCEECGGGGSSSEEC
T ss_pred cEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecC-CCCc---------------ceEEEEcCCCCEeChHHHhCCCCc
Confidence 999999999999999999999999999999998641 1232 222556666 99999999999998
Q ss_pred CCC
Q psy5056 164 EEP 166 (182)
Q Consensus 164 ~~~ 166 (182)
.+.
T Consensus 245 ~~t 247 (299)
T 3shr_A 245 TAN 247 (299)
T ss_dssp SSE
T ss_pred ceE
Confidence 863
No 13
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.20 E-value=4.2e-11 Score=88.55 Aligned_cols=87 Identities=22% Similarity=0.414 Sum_probs=73.8
Q ss_pred CceeCCCCHHHHHHHHhH------------HHHHHHHhhcccceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchh
Q psy5056 57 PKVIYPKSDEQRRSLAES------------DQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDE 124 (182)
Q Consensus 57 ~~~~~pKs~~~~~~I~~a------------~~l~~i~d~m~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G 124 (182)
..+..+|++.++..+.+. .++..++..+..+.|++|++|++||+.++.+|+|.+|.+++++. |
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~-----g 81 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKE-----G 81 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEET-----T
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEEC-----C
Confidence 356789999988887766 89999999999999999999999999999999999999999753 2
Q ss_pred hHHHHHHHHHhhhhcCCCccccchh-hhhhhhhhccCCCCCC
Q psy5056 125 LRDILLEFTISYLLEQPSDVIEYGV-DFFTKLKLNRRTTPEE 165 (182)
Q Consensus 125 ~~~lL~~~t~~vl~~qp~~l~~~~~-dyFGELall~~~pr~~ 165 (182)
. .+..+.. ++||+++++.+.++.+
T Consensus 82 ~-----------------~~~~~~~G~~fGe~~~l~~~~~~~ 106 (139)
T 3ocp_A 82 V-----------------KLCTMGPGKVFGELAILYNCTRTA 106 (139)
T ss_dssp E-----------------EEEEECTTCEESCHHHHHCCCCSS
T ss_pred E-----------------EEEEeCCCCEeccHHHHCCCCcce
Confidence 1 1444555 9999999999888875
No 14
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.16 E-value=5.8e-12 Score=103.77 Aligned_cols=130 Identities=22% Similarity=0.210 Sum_probs=87.5
Q ss_pred ccCCCccCCCCccccCCcccceeeeeec-CCCCCCCCCCCceeCCCCHHHHHH-----HHhH--------HHHHHHHhhc
Q psy5056 19 LSLRSTYFQEPPVARFNTRRKSVYAESY-NPEDDEEDEGPKVIYPKSDEQRRS-----LAES--------DQMNDVIDAM 84 (182)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~RR~sVsAE~~-~~~~~~~~~~~~~~~pKs~~~~~~-----I~~a--------~~l~~i~d~m 84 (182)
.-..++.||+.++..+.+|..++.|.+. ..+..+...+. ....+++..... +... .++..++..+
T Consensus 102 ~l~~G~~fGe~~l~~~~~~~~tv~a~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~lf~~l~~~~~~~l~~~~ 180 (291)
T 2qcs_B 102 SVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYR-RILMGSTLRKRKMYEEFLSKVSILESLDKWERLTVADAL 180 (291)
T ss_dssp EECTTCEECGGGGTCCCBCSSEEEESSCEEEEEEEHHHHH-HHHHHHHHHHHHHHHHHHHTCGGGTTCCHHHHHHHHHHC
T ss_pred EcCCCCccchHHHhcCCCCceEEEECCCEEEEEEEhHHHH-HHHhhhHHHHHHHHHHHHhhchHhhhCCHHHHHHHHhhc
Confidence 3457889999998888778788777542 11111111110 011111221111 1111 7788999999
Q ss_pred ccceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhhhhhhccCCCC
Q psy5056 85 FEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFTKLKLNRRTTP 163 (182)
Q Consensus 85 ~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFGELall~~~pr 163 (182)
..+.|.+|++|++||+.++.||+|.+|.+++++... +|. +...+..+.. ++|||++++.+.||
T Consensus 181 ~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~--~~~--------------~~~~~~~l~~G~~fGe~~ll~~~~~ 244 (291)
T 2qcs_B 181 EPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRS--ENE--------------EFVEVGRLGPSDYFGEIALLMNRPK 244 (291)
T ss_dssp EEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECS--TTS--------------CEEEEEEECTTCEECSGGGTCCCCC
T ss_pred EEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecC--CCC--------------ccEEEEEeCCCCEecHHHHcCCCCc
Confidence 999999999999999999999999999999987532 221 1112555666 99999999999998
Q ss_pred CC
Q psy5056 164 EE 165 (182)
Q Consensus 164 ~~ 165 (182)
++
T Consensus 245 ~~ 246 (291)
T 2qcs_B 245 AA 246 (291)
T ss_dssp SS
T ss_pred ce
Confidence 76
No 15
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.14 E-value=4.4e-11 Score=115.64 Aligned_cols=70 Identities=17% Similarity=0.215 Sum_probs=59.7
Q ss_pred HHHHHHHhhccc-ceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhh
Q psy5056 75 DQMNDVIDAMFE-KPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFF 152 (182)
Q Consensus 75 ~~l~~i~d~m~~-~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyF 152 (182)
..++.++++|.. .++++|++|++|||.||.||||.+|+|+|++.. ++ .|..|.. |||
T Consensus 351 ~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~~~---~~------------------~v~~L~~Gd~F 409 (999)
T 4f7z_A 351 TVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYG---KG------------------VVCTLHEGDDF 409 (999)
T ss_dssp HHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEETT---TE------------------EEEEEETTCEE
T ss_pred HHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEEcC---Cc------------------ceEEecCCCcc
Confidence 678889999875 456899999999999999999999999998641 12 2666777 999
Q ss_pred hhhhhccCCCCCC
Q psy5056 153 TKLKLNRRTTPEE 165 (182)
Q Consensus 153 GELall~~~pr~~ 165 (182)
||||++.+.||+|
T Consensus 410 GElALL~~~PR~a 422 (999)
T 4f7z_A 410 GKLALVNDAPRAA 422 (999)
T ss_dssp CGGGGTCSCBCSS
T ss_pred cchhhccCCCeeE
Confidence 9999999999998
No 16
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.01 E-value=5.7e-10 Score=88.93 Aligned_cols=69 Identities=32% Similarity=0.424 Sum_probs=60.4
Q ss_pred HHHHHHHhhcccceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhh
Q psy5056 75 DQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFT 153 (182)
Q Consensus 75 ~~l~~i~d~m~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFG 153 (182)
+++..++..|..+.|++|++|++|||.++.||+|.+|.++++... . .+..+.+ ++||
T Consensus 21 ~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~~~-----~-----------------~~~~~~~g~~fG 78 (246)
T 3of1_A 21 DSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYVND-----N-----------------KVNSSGPGSSFG 78 (246)
T ss_dssp HHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEESTT-----S-----------------CCEEECTTCEEC
T ss_pred HHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEECC-----E-----------------EEEecCCCCeee
Confidence 889999999999999999999999999999999999999998631 1 1444555 9999
Q ss_pred hhhhccCCCCCC
Q psy5056 154 KLKLNRRTTPEE 165 (182)
Q Consensus 154 ELall~~~pr~~ 165 (182)
|++++.+.||++
T Consensus 79 e~~l~~~~~~~~ 90 (246)
T 3of1_A 79 ELALMYNSPRAA 90 (246)
T ss_dssp HHHHHHTCCCSS
T ss_pred hhHHhcCCCCCc
Confidence 999999999976
No 17
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=98.96 E-value=8.3e-10 Score=80.86 Aligned_cols=77 Identities=13% Similarity=0.087 Sum_probs=59.1
Q ss_pred HHHHHHHhhcccceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhh
Q psy5056 75 DQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFT 153 (182)
Q Consensus 75 ~~l~~i~d~m~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFG 153 (182)
.++..++..+..+.|++|++|++||+.++.+|+|.+|.+++++.. ++|...+ +..+..+.+ ++||
T Consensus 20 ~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~--~~g~~~~------------~~~~~~~~~G~~fG 85 (142)
T 3mdp_A 20 EQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSN--GGAGSAA------------NSTVCSVVPGAIFG 85 (142)
T ss_dssp HHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC-----------------------CEEEEECTTCEEC
T ss_pred HHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEEC--CCCCceE------------eeeEEEecCCCEec
Confidence 788899999999999999999999999999999999999998753 3343111 001334445 9999
Q ss_pred hhhhccCCCCCC
Q psy5056 154 KLKLNRRTTPEE 165 (182)
Q Consensus 154 ELall~~~pr~~ 165 (182)
+++++.+.++.+
T Consensus 86 ~~~~~~~~~~~~ 97 (142)
T 3mdp_A 86 VSSLIKPYHYTS 97 (142)
T ss_dssp GGGSSTTCBCSS
T ss_pred hHHHcCCCCceE
Confidence 999998888765
No 18
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=98.91 E-value=2.5e-09 Score=79.33 Aligned_cols=74 Identities=16% Similarity=0.146 Sum_probs=59.8
Q ss_pred HHHHHHHhhcccceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhh
Q psy5056 75 DQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFT 153 (182)
Q Consensus 75 ~~l~~i~d~m~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFG 153 (182)
+++..++..+..+.|++|++|++||+.++.+|+|.+|.+++++.. ++|.. ..+..+.. ++||
T Consensus 26 ~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~--~~g~~---------------~~~~~~~~G~~~G 88 (154)
T 2z69_A 26 VQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLT--PEGQE---------------KILEVTNERNTFA 88 (154)
T ss_dssp HHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCC--C--------------------CCEEECTTEEES
T ss_pred HHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEEC--CCCCE---------------EEEEEccCCCeec
Confidence 788999999999999999999999999999999999999998753 33431 11444555 9999
Q ss_pred hhhhccCCC-CCC
Q psy5056 154 KLKLNRRTT-PEE 165 (182)
Q Consensus 154 ELall~~~p-r~~ 165 (182)
+++++.+.+ +..
T Consensus 89 ~~~~~~~~~~~~~ 101 (154)
T 2z69_A 89 EAMMFMDTPNYVA 101 (154)
T ss_dssp GGGGGSSCSBCSS
T ss_pred cHhhccCCCCCce
Confidence 999998887 654
No 19
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=98.91 E-value=9.4e-10 Score=92.63 Aligned_cols=73 Identities=15% Similarity=0.155 Sum_probs=62.3
Q ss_pred HHHHHHHhhcccceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhh
Q psy5056 75 DQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFT 153 (182)
Q Consensus 75 ~~l~~i~d~m~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFG 153 (182)
+++..|+..+..+.|++|++|++|||.++.||+|.+|.+++++... +|.. .+..+.. ++||
T Consensus 27 ~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~--~g~~----------------~~~~~~~G~~fG 88 (333)
T 4ava_A 27 EGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGD--DGVA----------------IIARALPGMIVG 88 (333)
T ss_dssp HHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECT--TCCE----------------EEEEECTTCEES
T ss_pred HHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECC--CCcE----------------EEEEecCCCEee
Confidence 7888999999999999999999999999999999999999987632 3321 2445555 9999
Q ss_pred hhhhccCCCCCC
Q psy5056 154 KLKLNRRTTPEE 165 (182)
Q Consensus 154 ELall~~~pr~~ 165 (182)
|++++.+.||.+
T Consensus 89 e~~l~~~~~~~~ 100 (333)
T 4ava_A 89 EIALLRDSPRSA 100 (333)
T ss_dssp HHHHHHTCBCSS
T ss_pred HHHhcCCCCceE
Confidence 999999999886
No 20
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=98.90 E-value=2.8e-09 Score=93.67 Aligned_cols=85 Identities=14% Similarity=0.180 Sum_probs=66.8
Q ss_pred CCCCHHHHHHHHhH------------HHHHHHHhhccc-ceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHH
Q psy5056 61 YPKSDEQRRSLAES------------DQMNDVIDAMFE-KPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRD 127 (182)
Q Consensus 61 ~pKs~~~~~~I~~a------------~~l~~i~d~m~~-~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~ 127 (182)
..++.++.+.+.+. .++..+++.+.. +.|++|++|++|||.++.||||.+|.|+|++... +
T Consensus 325 ~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~~~---~--- 398 (469)
T 1o7f_A 325 GQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGK---G--- 398 (469)
T ss_dssp TSCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETTT---E---
T ss_pred hhcCHHHHHHHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEcCC---e---
Confidence 34555555554443 788899999974 5999999999999999999999999999987421 1
Q ss_pred HHHHHHHhhhhcCCCccccchh-hhhhhhhhccCCCCCCC
Q psy5056 128 ILLEFTISYLLEQPSDVIEYGV-DFFTKLKLNRRTTPEEP 166 (182)
Q Consensus 128 lL~~~t~~vl~~qp~~l~~~~~-dyFGELall~~~pr~~~ 166 (182)
.+..+.. +||||++++.+.||++.
T Consensus 399 ---------------~~~~l~~G~~fGe~~ll~~~~~~~t 423 (469)
T 1o7f_A 399 ---------------VVCTLHEGDDFGKLALVNDAPRAAS 423 (469)
T ss_dssp ---------------EEEEEETTCEECGGGGTCCSCCSSE
T ss_pred ---------------eEEEecCCCEEEEehhhcCCCceEE
Confidence 1455555 99999999999998874
No 21
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=98.87 E-value=1.2e-09 Score=85.62 Aligned_cols=74 Identities=11% Similarity=0.216 Sum_probs=62.0
Q ss_pred HHHHHHHhhcccceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhh
Q psy5056 75 DQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFT 153 (182)
Q Consensus 75 ~~l~~i~d~m~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFG 153 (182)
+++..++..+..+.|++|++|++||+.++.+|+|.+|.++++... ++|.. ..+..+.+ ++||
T Consensus 53 ~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~v~~~~--~~g~~---------------~~~~~~~~G~~fG 115 (187)
T 3gyd_A 53 EEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVNVIKDI--PNKGI---------------QTIAKVGAGAIIG 115 (187)
T ss_dssp HHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEEE--TTTEE---------------EEEEEEETTCEES
T ss_pred HHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEEEEEEC--CCCCe---------------EEEEEccCCCeee
Confidence 889999999999999999999999999999999999999999763 23321 11445555 9999
Q ss_pred hhhhccCCCCCC
Q psy5056 154 KLKLNRRTTPEE 165 (182)
Q Consensus 154 ELall~~~pr~~ 165 (182)
+++++.+.|+.+
T Consensus 116 e~~~l~~~~~~~ 127 (187)
T 3gyd_A 116 EMSMIDGMPRSA 127 (187)
T ss_dssp HHHHHHCCCCSS
T ss_pred eHHHhCCCCeeE
Confidence 999998888765
No 22
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=98.86 E-value=3.3e-09 Score=83.11 Aligned_cols=71 Identities=17% Similarity=0.213 Sum_probs=60.8
Q ss_pred HHHHHHHhhcccceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhh
Q psy5056 75 DQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFT 153 (182)
Q Consensus 75 ~~l~~i~d~m~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFG 153 (182)
..+..++..|..+.|.+|++|++|||.++.+|+|.+|.|+++. ++|. .+..+.. ++||
T Consensus 85 ~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~----~~g~-----------------~~~~l~~G~~fG 143 (198)
T 2ptm_A 85 NFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM----SDGV-----------------IATSLSDGSYFG 143 (198)
T ss_dssp HHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEEC----TTSC-----------------EEEEECTTCEES
T ss_pred HHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEe----cCCe-----------------EEEEecCCCEec
Confidence 7889999999999999999999999999999999999999986 2231 1445555 9999
Q ss_pred hhhhccCCCCCCC
Q psy5056 154 KLKLNRRTTPEEP 166 (182)
Q Consensus 154 ELall~~~pr~~~ 166 (182)
|++++.+.||.+.
T Consensus 144 e~~~~~~~~~~~~ 156 (198)
T 2ptm_A 144 EICLLTRERRVAS 156 (198)
T ss_dssp CHHHHHSSCCSSE
T ss_pred hHHHcCCCccceE
Confidence 9999999888763
No 23
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=98.83 E-value=3.4e-09 Score=83.41 Aligned_cols=69 Identities=19% Similarity=0.293 Sum_probs=59.0
Q ss_pred HHHHHHHhhcccceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhh
Q psy5056 75 DQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFT 153 (182)
Q Consensus 75 ~~l~~i~d~m~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFG 153 (182)
..+..|+..|..+.|.+|++|++|||.++.+|+|.+|.|+++.. +|. ...+.. ++||
T Consensus 86 ~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~----~g~------------------~~~l~~G~~fG 143 (202)
T 3bpz_A 86 NFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTK----GNK------------------EMKLSDGSYFG 143 (202)
T ss_dssp HHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEECT----TSC------------------CEEEETTCEEC
T ss_pred HHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEEC----CCe------------------EEEEcCCCEec
Confidence 78899999999999999999999999999999999999999742 232 123445 9999
Q ss_pred hhhhccCCCCCC
Q psy5056 154 KLKLNRRTTPEE 165 (182)
Q Consensus 154 ELall~~~pr~~ 165 (182)
|++++.+.+|.+
T Consensus 144 e~~~~~~~~~~~ 155 (202)
T 3bpz_A 144 EICLLTRGRRTA 155 (202)
T ss_dssp HHHHHHCSBCSS
T ss_pred cHHHhcCCCccc
Confidence 999999888876
No 24
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=98.82 E-value=4.1e-09 Score=77.16 Aligned_cols=71 Identities=10% Similarity=0.014 Sum_probs=56.1
Q ss_pred HHHHHHHhhcccceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccc--cchh-hh
Q psy5056 75 DQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVI--EYGV-DF 151 (182)
Q Consensus 75 ~~l~~i~d~m~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~--~~~~-dy 151 (182)
+++..|+..+..+.|++|++|++|||.++.+|+|.+|.+++... ++|.. ..+. .+.+ ++
T Consensus 20 ~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~---~~g~~---------------~~~~~~~l~~G~~ 81 (137)
T 1wgp_A 20 RLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTT---DGGRS---------------GFYNRSLLKEGDF 81 (137)
T ss_dssp HHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECC---SSCSS---------------SSSCEEECCTTCB
T ss_pred HHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEc---CCCcc---------------eeeeeeeecCCCE
Confidence 56778889999999999999999999999999999999997632 23321 1122 5555 99
Q ss_pred hhhhhh---ccCCCC
Q psy5056 152 FTKLKL---NRRTTP 163 (182)
Q Consensus 152 FGELal---l~~~pr 163 (182)
|||+++ +.+.||
T Consensus 82 fGe~~l~~~~~~~~~ 96 (137)
T 1wgp_A 82 CGDELLTWALDPKSG 96 (137)
T ss_dssp SSTHHHHHHHCSSCC
T ss_pred ecHHHHHHHhccccc
Confidence 999996 777764
No 25
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=98.82 E-value=1.6e-09 Score=79.65 Aligned_cols=69 Identities=20% Similarity=0.196 Sum_probs=58.4
Q ss_pred HHHHHHHhhcccceec-CCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhh
Q psy5056 75 DQMNDVIDAMFEKPVE-AGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFF 152 (182)
Q Consensus 75 ~~l~~i~d~m~~~~~~-~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyF 152 (182)
.++..|+..+..+.|. +|++|++||+.++.+|+|.+|.+++++ ++|.. ..+.. ++|
T Consensus 30 ~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~----~~g~~------------------~~l~~G~~f 87 (134)
T 2d93_A 30 SVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISH----PDGKV------------------ENLFMGNSF 87 (134)
T ss_dssp HHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEEC----SSSCE------------------EEECTTCEE
T ss_pred HHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEc----CCCcE------------------EEecCCCcc
Confidence 8889999999999999 999999999999999999999999985 23321 12334 999
Q ss_pred hhhhhccCCCCCC
Q psy5056 153 TKLKLNRRTTPEE 165 (182)
Q Consensus 153 GELall~~~pr~~ 165 (182)
|+++++.+.++.+
T Consensus 88 G~~~~~~~~~~~~ 100 (134)
T 2d93_A 88 GITPTLDKQYMHG 100 (134)
T ss_dssp SCCSSSCCEECCS
T ss_pred ChhHhcCCCccee
Confidence 9999999888754
No 26
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=98.81 E-value=3.4e-09 Score=77.96 Aligned_cols=74 Identities=20% Similarity=0.283 Sum_probs=60.0
Q ss_pred HHHHHHHhhcccceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhh
Q psy5056 75 DQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFT 153 (182)
Q Consensus 75 ~~l~~i~d~m~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFG 153 (182)
.++..++..+..+.|++|++|++||+..+.+|+|.+|.++++.... +|.. ..+..+.+ ++||
T Consensus 19 ~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~--~g~~---------------~~~~~~~~g~~~G 81 (149)
T 2pqq_A 19 EQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSP--DGRE---------------NMLAVVGPSELIG 81 (149)
T ss_dssp HHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECT--TSSE---------------EEEEEECTTCEES
T ss_pred HHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECC--CCcE---------------EEEEEcCCcCEec
Confidence 6778899999999999999999999999999999999999987532 3321 11444455 9999
Q ss_pred hhhhccCCCCCC
Q psy5056 154 KLKLNRRTTPEE 165 (182)
Q Consensus 154 ELall~~~pr~~ 165 (182)
+++++.+.|+..
T Consensus 82 ~~~~~~~~~~~~ 93 (149)
T 2pqq_A 82 ELSLFDPGPRTA 93 (149)
T ss_dssp GGGGTSCEECSS
T ss_pred hHHhcCCCCcce
Confidence 999998877664
No 27
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=98.78 E-value=4.8e-09 Score=82.99 Aligned_cols=69 Identities=17% Similarity=0.200 Sum_probs=59.1
Q ss_pred HHHHHHHhhcccceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhh
Q psy5056 75 DQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFT 153 (182)
Q Consensus 75 ~~l~~i~d~m~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFG 153 (182)
..+..|+..|..+.|.+|++|++|||.++.+|+|.+|.|+++.. |. .+..+.+ ++||
T Consensus 89 ~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~-----~~-----------------~~~~l~~G~~fG 146 (212)
T 3ukn_A 89 GCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLKD-----NT-----------------VLAILGKGDLIG 146 (212)
T ss_dssp HHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEESS-----SC-----------------EEEEECTTCEEE
T ss_pred HHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEEC-----Ce-----------------EEEEecCCCCcC
Confidence 77889999999999999999999999999999999999999863 11 1444555 9999
Q ss_pred hhhhccCC--CCCC
Q psy5056 154 KLKLNRRT--TPEE 165 (182)
Q Consensus 154 ELall~~~--pr~~ 165 (182)
|++++.+. +|.+
T Consensus 147 e~~~~~~~~~~~~~ 160 (212)
T 3ukn_A 147 SDSLTKEQVIKTNA 160 (212)
T ss_dssp CSCCSSSSCCBBCS
T ss_pred cHHhccCCCCCcce
Confidence 99999887 7765
No 28
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=98.78 E-value=6.5e-09 Score=77.68 Aligned_cols=69 Identities=13% Similarity=0.137 Sum_probs=58.5
Q ss_pred HHHHHHHhhcccceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhh
Q psy5056 75 DQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFT 153 (182)
Q Consensus 75 ~~l~~i~d~m~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFG 153 (182)
.++..++..+..+.|++|++|++||+.++.+|+|.+|.+++++... .+..+.+ ++||
T Consensus 41 ~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~----------------------~~~~~~~G~~fG 98 (160)
T 4f8a_A 41 GCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQDDE----------------------VVAILGKGDVFG 98 (160)
T ss_dssp HHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEETTE----------------------EEEEEETTCEEE
T ss_pred HHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEECCE----------------------EEEEecCCCEeC
Confidence 8899999999999999999999999999999999999999986311 1444555 9999
Q ss_pred hhhhccC--CCCCC
Q psy5056 154 KLKLNRR--TTPEE 165 (182)
Q Consensus 154 ELall~~--~pr~~ 165 (182)
+++++.+ .++.+
T Consensus 99 ~~~~~~~~~~~~~~ 112 (160)
T 4f8a_A 99 DVFWKEATLAQSCA 112 (160)
T ss_dssp CCTTTCSSCCBCSS
T ss_pred cHHHhcCcccceEE
Confidence 9999987 56654
No 29
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=98.74 E-value=2.8e-09 Score=85.51 Aligned_cols=88 Identities=9% Similarity=0.121 Sum_probs=67.1
Q ss_pred CCCCHHHHHHHHhH--------HHHHHHHhh--cccceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHHHH
Q psy5056 61 YPKSDEQRRSLAES--------DQMNDVIDA--MFEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILL 130 (182)
Q Consensus 61 ~pKs~~~~~~I~~a--------~~l~~i~d~--m~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~ 130 (182)
+++.+.-..+|... +++..++.. +..+.|++|++|++|||.++.+|+|.+|.+++++.. ++|.+
T Consensus 10 ~~~~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~--~~G~~---- 83 (232)
T 1zyb_A 10 HHHMETMFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNA--KENIY---- 83 (232)
T ss_dssp HHHHHHHHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEEC--GGGSC----
T ss_pred HhHHHHHHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEEC--CCCCE----
Confidence 34444444445544 888999998 999999999999999999999999999999998753 34431
Q ss_pred HHHHhhhhcCCCccccchh-hhhhhhhhccCCC-CCC
Q psy5056 131 EFTISYLLEQPSDVIEYGV-DFFTKLKLNRRTT-PEE 165 (182)
Q Consensus 131 ~~t~~vl~~qp~~l~~~~~-dyFGELall~~~p-r~~ 165 (182)
..+..+.+ ++||+++++.+.+ +.+
T Consensus 84 -----------~~l~~~~~G~~fG~~~~~~~~~~~~~ 109 (232)
T 1zyb_A 84 -----------TVIEQIEAPYLIEPQSLFGMNTNYAS 109 (232)
T ss_dssp -----------EEEEEEESSEEECGGGGSSSCCBCSS
T ss_pred -----------EEEEEccCCCeeeehHHhCCCCCCce
Confidence 11344445 9999999998887 554
No 30
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=98.72 E-value=1.5e-08 Score=80.85 Aligned_cols=84 Identities=12% Similarity=0.116 Sum_probs=66.9
Q ss_pred HHHHHHHHhH--------HHHHHHHhhcccceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhh
Q psy5056 65 DEQRRSLAES--------DQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISY 136 (182)
Q Consensus 65 ~~~~~~I~~a--------~~l~~i~d~m~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~v 136 (182)
++..++|.+. +++..++..+..+.|++|++|++||+.++.+|+|.+|.++++... ++|.+
T Consensus 7 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~--~~G~~---------- 74 (237)
T 3fx3_A 7 EAQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMT--PTGSE---------- 74 (237)
T ss_dssp HHHHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEC--TTSCE----------
T ss_pred HHHHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEEC--CCCCE----------
Confidence 4455566555 889999999999999999999999999999999999999999753 33431
Q ss_pred hhcCCCccccchh-hhhhhhhhccCCCCCC
Q psy5056 137 LLEQPSDVIEYGV-DFFTKLKLNRRTTPEE 165 (182)
Q Consensus 137 l~~qp~~l~~~~~-dyFGELall~~~pr~~ 165 (182)
..+..+.+ ++||+++++.+.|+.+
T Consensus 75 -----~~~~~~~~G~~~G~~~~~~~~~~~~ 99 (237)
T 3fx3_A 75 -----AVVSVFTRGESFGEAVALRNTPYPV 99 (237)
T ss_dssp -----EEEEEEETTEEECHHHHHHTCCCSS
T ss_pred -----EEEEEeCCCCEechHHHhcCCCCCc
Confidence 11444445 9999999998877765
No 31
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=98.71 E-value=2.2e-08 Score=73.08 Aligned_cols=67 Identities=19% Similarity=0.364 Sum_probs=57.5
Q ss_pred HHHHHHHhhcccceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhh
Q psy5056 75 DQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFT 153 (182)
Q Consensus 75 ~~l~~i~d~m~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFG 153 (182)
+++..++..+..+.|++|++|++||+..+.+|+|.+|.++++... . ..+.+ ++||
T Consensus 25 ~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~---~---------------------~~~~~G~~~G 80 (138)
T 1vp6_A 25 AVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN---P---------------------VELGPGAFFG 80 (138)
T ss_dssp HHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS---C---------------------EEECTTCEEC
T ss_pred HHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC---c---------------------ceECCCCEee
Confidence 788999999999999999999999999999999999999998642 0 11223 9999
Q ss_pred hhhhccCCCCCC
Q psy5056 154 KLKLNRRTTPEE 165 (182)
Q Consensus 154 ELall~~~pr~~ 165 (182)
+++++.+.++..
T Consensus 81 ~~~~~~~~~~~~ 92 (138)
T 1vp6_A 81 EMALISGEPRSA 92 (138)
T ss_dssp HHHHHHCCCCSS
T ss_pred ehHhccCCCcee
Confidence 999998888765
No 32
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=98.68 E-value=1.6e-08 Score=79.30 Aligned_cols=74 Identities=14% Similarity=0.214 Sum_probs=60.7
Q ss_pred HHHHHHHhhcccceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhh
Q psy5056 75 DQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFT 153 (182)
Q Consensus 75 ~~l~~i~d~m~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFG 153 (182)
+++..++..+..+.|++|++|++||+.++.+|+|.+|.++++... ++|.+ ..+..+.+ ++||
T Consensus 13 ~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~--~~g~~---------------~~~~~~~~g~~~G 75 (216)
T 4ev0_A 13 EEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTH--LGGQE---------------RTLALLGPGELFG 75 (216)
T ss_dssp HHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEEC--SSSCE---------------EEEEEECTTCEEC
T ss_pred HHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEEC--CCCCE---------------EEEEEecCCCEEe
Confidence 678889999999999999999999999999999999999998753 33321 11444455 9999
Q ss_pred hhhhccCCCCCC
Q psy5056 154 KLKLNRRTTPEE 165 (182)
Q Consensus 154 ELall~~~pr~~ 165 (182)
+++++.+.|+.+
T Consensus 76 ~~~~~~~~~~~~ 87 (216)
T 4ev0_A 76 EMSLLDEGERSA 87 (216)
T ss_dssp HHHHHHCCBCSS
T ss_pred ehhhcCCCCcce
Confidence 999998888765
No 33
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=98.68 E-value=9.5e-09 Score=79.59 Aligned_cols=74 Identities=5% Similarity=0.003 Sum_probs=59.6
Q ss_pred HHHHHHHhhcccceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhh
Q psy5056 75 DQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFT 153 (182)
Q Consensus 75 ~~l~~i~d~m~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFG 153 (182)
+++..++..+..+.|++|++|++|||.++.+|+|.+|.++++... ++|.+.+ +.-+.+ ++||
T Consensus 21 ~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~--~~G~e~~---------------~~~~~~g~~~g 83 (194)
T 3dn7_A 21 EDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFID--EKGIEQT---------------TQFAIENWWLS 83 (194)
T ss_dssp HHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEEC--TTSCEEE---------------EEEEETTCEEC
T ss_pred HHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEEC--CCCCEEE---------------EEEccCCcEEe
Confidence 788999999999999999999999999999999999999999753 3443111 333344 9999
Q ss_pred hh-hhccCCCCCC
Q psy5056 154 KL-KLNRRTTPEE 165 (182)
Q Consensus 154 EL-all~~~pr~~ 165 (182)
|+ +++.+.|+.+
T Consensus 84 e~~~~~~~~~~~~ 96 (194)
T 3dn7_A 84 DYMAFQKQQPADF 96 (194)
T ss_dssp CHHHHHHTCBCSS
T ss_pred ehHHHhcCCCCce
Confidence 98 6777777754
No 34
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=98.68 E-value=5.6e-09 Score=83.03 Aligned_cols=74 Identities=8% Similarity=0.099 Sum_probs=60.4
Q ss_pred HHHHHHHhhcccceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhh
Q psy5056 75 DQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFT 153 (182)
Q Consensus 75 ~~l~~i~d~m~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFG 153 (182)
+++..++..+..+.|++|++|++||+.++.+|+|.+|.++++... ++|.+. .+..+.+ ++||
T Consensus 20 ~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~--~~g~~~---------------~~~~~~~g~~~G 82 (231)
T 3e97_A 20 DAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVS--LGGRER---------------VLGDIYAPGVVG 82 (231)
T ss_dssp HHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEEC--C--CEE---------------EEEEEESSEEES
T ss_pred HHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEEC--CCCceE---------------EEEecCCCCEEe
Confidence 788899999999999999999999999999999999999998753 344311 1344445 9999
Q ss_pred hhhhccCCCCCC
Q psy5056 154 KLKLNRRTTPEE 165 (182)
Q Consensus 154 ELall~~~pr~~ 165 (182)
+++++.+.|+.+
T Consensus 83 ~~~~~~~~~~~~ 94 (231)
T 3e97_A 83 ETAVLAHQERSA 94 (231)
T ss_dssp TTTTTCCCCCCE
T ss_pred eHHHhCCCCceE
Confidence 999998888764
No 35
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=98.68 E-value=2.3e-08 Score=78.93 Aligned_cols=74 Identities=16% Similarity=0.146 Sum_probs=61.0
Q ss_pred HHHHHHHhhcccceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhh
Q psy5056 75 DQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFT 153 (182)
Q Consensus 75 ~~l~~i~d~m~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFG 153 (182)
+++..++..+..+.|++|++|++||+.++.+|+|.+|.++++... ++|.. ..+..+.+ ++||
T Consensus 23 ~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~--~~G~~---------------~~~~~~~~g~~~G 85 (227)
T 3dkw_A 23 VQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLT--PEGQE---------------KILEVTNERNTFA 85 (227)
T ss_dssp HHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCC--GGGCC---------------BCCCEECTTEEES
T ss_pred HHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEEC--CCCCE---------------EEEEEcCCCCEee
Confidence 778899999999999999999999999999999999999998753 34431 12444445 9999
Q ss_pred hhhhccCCC-CCC
Q psy5056 154 KLKLNRRTT-PEE 165 (182)
Q Consensus 154 ELall~~~p-r~~ 165 (182)
+++++.+.| +.+
T Consensus 86 ~~~~~~~~~~~~~ 98 (227)
T 3dkw_A 86 EAMMFMDTPNYVA 98 (227)
T ss_dssp CTTTTTTCSBCSS
T ss_pred eHHhcCCCCCCce
Confidence 999998888 654
No 36
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=98.68 E-value=1.3e-08 Score=80.67 Aligned_cols=74 Identities=19% Similarity=0.269 Sum_probs=60.5
Q ss_pred HHHHHHHhhcccceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhh
Q psy5056 75 DQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFT 153 (182)
Q Consensus 75 ~~l~~i~d~m~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFG 153 (182)
+++..++..+..+.|++|++|++|||.++.+|+|.+|.+++++.. ++|.. ..+..+.+ ++||
T Consensus 20 ~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~--~~g~~---------------~~~~~~~~G~~~G 82 (227)
T 3d0s_A 20 SAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRA--PDGRE---------------NLLTIMGPSDMFG 82 (227)
T ss_dssp STTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEEC--TTSCE---------------EEEEEECTTCEES
T ss_pred HHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEEC--CCCcE---------------EEEEEecCCCEEe
Confidence 567789999999999999999999999999999999999998753 23321 11344445 9999
Q ss_pred hhhhccCCCCCC
Q psy5056 154 KLKLNRRTTPEE 165 (182)
Q Consensus 154 ELall~~~pr~~ 165 (182)
+++++.+.|+.+
T Consensus 83 ~~~~~~~~~~~~ 94 (227)
T 3d0s_A 83 ELSIFDPGPRTS 94 (227)
T ss_dssp CHHHHSCSCCSS
T ss_pred eHHHcCCCCcee
Confidence 999998888765
No 37
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=98.67 E-value=1.8e-08 Score=78.38 Aligned_cols=74 Identities=16% Similarity=0.197 Sum_probs=58.0
Q ss_pred HHHHHHHhhcccceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhh
Q psy5056 75 DQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFT 153 (182)
Q Consensus 75 ~~l~~i~d~m~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFG 153 (182)
+++..++..+..+.|++|++|++||+.++.+|+|.+|.+++++.. ++|.+ ..+..+.+ ++||
T Consensus 4 ~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~--~~G~~---------------~~~~~~~~g~~~G 66 (207)
T 2oz6_A 4 KHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIED--DDGRE---------------MIIGYLNSGDFFG 66 (207)
T ss_dssp HHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEEC--TTSCE---------------EEEEEEETTCEES
T ss_pred HHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEEC--CCCCE---------------EEEEEcCCCCCcc
Confidence 467889999999999999999999999999999999999998753 23421 11344445 9999
Q ss_pred hhhhccCC----CCCC
Q psy5056 154 KLKLNRRT----TPEE 165 (182)
Q Consensus 154 ELall~~~----pr~~ 165 (182)
+++++.+. |+.+
T Consensus 67 ~~~~~~~~~~~~~~~~ 82 (207)
T 2oz6_A 67 ELGLFEKEGSEQERSA 82 (207)
T ss_dssp CTTTCC-----CBCCS
T ss_pred cHHHhcCCCCCCCcce
Confidence 99999887 5654
No 38
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=98.66 E-value=2.6e-08 Score=79.14 Aligned_cols=74 Identities=11% Similarity=-0.023 Sum_probs=58.8
Q ss_pred HHHHHHHhhcccceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhh
Q psy5056 75 DQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFT 153 (182)
Q Consensus 75 ~~l~~i~d~m~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFG 153 (182)
+++..++..+..+.|++|++|++|||.++.+|+|.+|.+++++.. ++|. ...+..+.+ ++||
T Consensus 24 ~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~--~~g~---------------~~~~~~~~~G~~~G 86 (232)
T 2gau_A 24 EERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREG--VYGR---------------FHISRIVKPGQFFG 86 (232)
T ss_dssp HHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-------C---------------CCEEEEECTTCEES
T ss_pred HHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEEC--CCCC---------------EEEEEEeCCCCEee
Confidence 778889999999999999999999999999999999999998753 2342 111444455 9999
Q ss_pred hhhhccCCCCCC
Q psy5056 154 KLKLNRRTTPEE 165 (182)
Q Consensus 154 ELall~~~pr~~ 165 (182)
+++++.+.|+.+
T Consensus 87 ~~~~~~~~~~~~ 98 (232)
T 2gau_A 87 MRPYFAEETCSS 98 (232)
T ss_dssp HHHHHHTSCCSS
T ss_pred eehhhCCCCcce
Confidence 999998887765
No 39
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=98.65 E-value=2.4e-08 Score=77.91 Aligned_cols=74 Identities=16% Similarity=0.129 Sum_probs=60.2
Q ss_pred HHHHHHHhhcccceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhh
Q psy5056 75 DQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFT 153 (182)
Q Consensus 75 ~~l~~i~d~m~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFG 153 (182)
+++..++..+..+.|++|++|++||+.++.+|+|.+|.+++++.. ++|.+ ..+..+.+ ++||
T Consensus 10 ~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~--~~g~~---------------~~~~~~~~g~~~G 72 (210)
T 3ryp_A 10 PTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKD--EEGKE---------------MILSYLNQGDFIG 72 (210)
T ss_dssp HHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEEC--TTCCE---------------EEEEEEETTCEES
T ss_pred HHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEEC--CCCCE---------------EEEEEcCCCCEee
Confidence 678899999999999999999999999999999999999998753 33431 11344445 9999
Q ss_pred hhhhccCC-CCCC
Q psy5056 154 KLKLNRRT-TPEE 165 (182)
Q Consensus 154 ELall~~~-pr~~ 165 (182)
+++++.+. |+.+
T Consensus 73 ~~~~~~~~~~~~~ 85 (210)
T 3ryp_A 73 ELGLFEEGQERSA 85 (210)
T ss_dssp CTTTTSTTCBCSS
T ss_pred eHHHhcCCCCceE
Confidence 99999887 5654
No 40
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=98.62 E-value=3.7e-08 Score=77.85 Aligned_cols=74 Identities=16% Similarity=0.204 Sum_probs=59.8
Q ss_pred HHHHHHHhhcccceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhh
Q psy5056 75 DQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFT 153 (182)
Q Consensus 75 ~~l~~i~d~m~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFG 153 (182)
+++..++..+..+.|++|++|++|||.++.+|+|.+|.+++++.. ++|.+. .+..+.+ ++||
T Consensus 25 ~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~--~~G~~~---------------~~~~~~~g~~~G 87 (230)
T 3iwz_A 25 GTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEE--DDDREL---------------VLGYFGSGEFVG 87 (230)
T ss_dssp HHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEEC--TTSCEE---------------EEEEECTTCEES
T ss_pred HHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEEC--CCCCEE---------------EEEEecCCCEEE
Confidence 788899999999999999999999999999999999999999753 334311 1334445 9999
Q ss_pred hhhhccCC-CCCC
Q psy5056 154 KLKLNRRT-TPEE 165 (182)
Q Consensus 154 ELall~~~-pr~~ 165 (182)
+++++.+. |+.+
T Consensus 88 ~~~~~~~~~~~~~ 100 (230)
T 3iwz_A 88 EMGLFIESDTREV 100 (230)
T ss_dssp CGGGTSCCSBCCS
T ss_pred ehhhhcCCCCcee
Confidence 99999875 5554
No 41
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=98.62 E-value=3.1e-08 Score=81.05 Aligned_cols=74 Identities=16% Similarity=0.129 Sum_probs=61.0
Q ss_pred HHHHHHHhhcccceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhh
Q psy5056 75 DQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFT 153 (182)
Q Consensus 75 ~~l~~i~d~m~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFG 153 (182)
+++..++..+..+.|++|++|++||+.++.+|+|.+|.+++++.. ++|.+ ..+..+.+ ++||
T Consensus 60 ~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~--~~G~e---------------~~~~~~~~G~~~G 122 (260)
T 3kcc_A 60 PTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKD--EEGKE---------------MILSYLNQGDFIG 122 (260)
T ss_dssp HHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEEC--TTCCE---------------EEEEEEETTCEES
T ss_pred HHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEEC--CCCCE---------------EEEEEcCCCCEEe
Confidence 889999999999999999999999999999999999999999753 23321 11444445 9999
Q ss_pred hhhhccCC-CCCC
Q psy5056 154 KLKLNRRT-TPEE 165 (182)
Q Consensus 154 ELall~~~-pr~~ 165 (182)
+++++.+. |+.+
T Consensus 123 e~~~~~~~~~~~~ 135 (260)
T 3kcc_A 123 ELGLFEEGQERSA 135 (260)
T ss_dssp CTTTTSTTCBCCS
T ss_pred ehHHhCCCCCCce
Confidence 99999887 6654
No 42
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=98.60 E-value=7e-08 Score=75.74 Aligned_cols=74 Identities=14% Similarity=0.050 Sum_probs=59.9
Q ss_pred HHHHHHHhhcccceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hh--
Q psy5056 75 DQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DF-- 151 (182)
Q Consensus 75 ~~l~~i~d~m~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dy-- 151 (182)
+++..++..+..+.|++|++|++||+.++.+|+|.+|.+++++.. ++|.+. .+..+.+ ++
T Consensus 17 ~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~--~~G~~~---------------~~~~~~~G~~~~ 79 (220)
T 3dv8_A 17 AQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILS--DEGREI---------------TLYRLFDMDMCL 79 (220)
T ss_dssp HHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEEC--TTSCEE---------------EEEEECTTCEES
T ss_pred HHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEEC--CCCCEE---------------EEEecCCCCeee
Confidence 678889999999999999999999999999999999999999753 334311 1333334 88
Q ss_pred hhhhhhccCCCCCC
Q psy5056 152 FTKLKLNRRTTPEE 165 (182)
Q Consensus 152 FGELall~~~pr~~ 165 (182)
||+++++.+.|+..
T Consensus 80 ~g~~~~~~~~~~~~ 93 (220)
T 3dv8_A 80 LSASCIMRSIQFEV 93 (220)
T ss_dssp GGGGGGCTTCCCCC
T ss_pred hhHHHHhCCCCCce
Confidence 89999999888775
No 43
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=98.46 E-value=7.2e-08 Score=77.83 Aligned_cols=71 Identities=13% Similarity=0.087 Sum_probs=57.3
Q ss_pred HHHHHHHhhcc---cceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-h
Q psy5056 75 DQMNDVIDAMF---EKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-D 150 (182)
Q Consensus 75 ~~l~~i~d~m~---~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-d 150 (182)
+.+..++..+. .+.|++|++|++||+.++.+|+|.+|.+++++.. ++|.+. .+..+.+ +
T Consensus 31 ~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~--~~G~~~---------------~l~~~~~g~ 93 (243)
T 3la7_A 31 NVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVY--EAGEEI---------------TVALLRENS 93 (243)
T ss_dssp HHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEEC--TTCCEE---------------EEEEECTTC
T ss_pred HHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEEC--CCCCEE---------------EEEEecCCC
Confidence 77788888888 9999999999999999999999999999998753 334311 1333444 9
Q ss_pred hhhhhhhccCCC
Q psy5056 151 FFTKLKLNRRTT 162 (182)
Q Consensus 151 yFGELall~~~p 162 (182)
+||+++++.+.|
T Consensus 94 ~~G~~~~~~~~~ 105 (243)
T 3la7_A 94 VFGVLSLLTGNK 105 (243)
T ss_dssp EESCHHHHSSCC
T ss_pred EEcchHHhCCCC
Confidence 999999998776
No 44
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=98.45 E-value=1.3e-07 Score=75.99 Aligned_cols=72 Identities=8% Similarity=0.068 Sum_probs=55.9
Q ss_pred HHHHHHHh--hcccceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchhhhh
Q psy5056 75 DQMNDVID--AMFEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGVDFF 152 (182)
Q Consensus 75 ~~l~~i~d--~m~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~dyF 152 (182)
+++..++. .+..+.|++|++|++|||.++.+|+|.+|.|++++.. ++|.+.+ +..+..++|
T Consensus 7 ~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~--~~G~e~~---------------~~~~~G~~~ 69 (238)
T 2bgc_A 7 EEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSIS--ENGTIMN---------------LQYYKGAFV 69 (238)
T ss_dssp HHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEEC--TTSCEEE---------------EEEEESSEE
T ss_pred HHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEEC--CCCCEEE---------------EEEcCCCEe
Confidence 45677775 4899999999999999999999999999999998753 3343111 333423999
Q ss_pred hhhhhccCCCC
Q psy5056 153 TKLKLNRRTTP 163 (182)
Q Consensus 153 GELall~~~pr 163 (182)
|+++++.+.++
T Consensus 70 Ge~~~~~~~~~ 80 (238)
T 2bgc_A 70 IMSGFIDTETS 80 (238)
T ss_dssp EESBCTTTCCB
T ss_pred cchhhhcCCCc
Confidence 99999988754
No 45
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=98.43 E-value=2.4e-07 Score=87.41 Aligned_cols=84 Identities=15% Similarity=0.210 Sum_probs=67.2
Q ss_pred CCCCHHHHHHHHhH------------HHHHHHHhhcc-cceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHH
Q psy5056 61 YPKSDEQRRSLAES------------DQMNDVIDAMF-EKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRD 127 (182)
Q Consensus 61 ~pKs~~~~~~I~~a------------~~l~~i~d~m~-~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~ 127 (182)
..|+.++.+.+.+. +++..++..+. .+.|++|++|++|||.++.+|+|.+|.|++++... +
T Consensus 20 ~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~g~---~--- 93 (694)
T 3cf6_E 20 GQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGK---G--- 93 (694)
T ss_dssp GGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEETTT---E---
T ss_pred hhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEeCC---E---
Confidence 46676666655544 88999999997 78999999999999999999999999999987421 1
Q ss_pred HHHHHHHhhhhcCCCccccchh-hhhhhhhhccCCCCCC
Q psy5056 128 ILLEFTISYLLEQPSDVIEYGV-DFFTKLKLNRRTTPEE 165 (182)
Q Consensus 128 lL~~~t~~vl~~qp~~l~~~~~-dyFGELall~~~pr~~ 165 (182)
.+..+.. ++|||++++.+.++.+
T Consensus 94 ---------------il~~l~~Gd~fGe~al~~~~~~~~ 117 (694)
T 3cf6_E 94 ---------------VVCTLHEGDDFGKLALVNDAPRAA 117 (694)
T ss_dssp ---------------EEEEEETTCEECHHHHHHTCBCSS
T ss_pred ---------------EEEEeCCCCEeehHHHhCCCCceE
Confidence 1344445 9999999998888775
No 46
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=98.39 E-value=2.1e-07 Score=72.39 Aligned_cols=61 Identities=13% Similarity=0.141 Sum_probs=48.4
Q ss_pred ceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhhhhhhccCCCCCC
Q psy5056 87 KPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFTKLKLNRRTTPEE 165 (182)
Q Consensus 87 ~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFGELall~~~pr~~ 165 (182)
+.|++|++|++||+.++.+|+|.+|.+++++.. ++|.. ..+..+.+ ++||+ +++.+.|+.+
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~--~~g~~---------------~~~~~~~~G~~~Ge-~~~~~~~~~~ 63 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELL--PDGRL---------------ITLRHVLPGDYFGE-EALEGKAYRY 63 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEEC--TTSCE---------------EEEEEECTTCEECG-GGGTCSBCSS
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEEC--CCCCE---------------EEEEEecCCCEech-hhhCCCCcee
Confidence 579999999999999999999999999998753 33321 11444445 99999 9998888775
No 47
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=98.37 E-value=1.6e-07 Score=74.20 Aligned_cols=72 Identities=8% Similarity=-0.053 Sum_probs=56.4
Q ss_pred HHHHHhhcccceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhhhh
Q psy5056 77 MNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFTKL 155 (182)
Q Consensus 77 l~~i~d~m~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFGEL 155 (182)
...+...+..+.|++|++|++||+.++.+|+|.+|.+++++.. ++|.+. .+..+.+ ++||++
T Consensus 15 ~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~--~~G~~~---------------~~~~~~~G~~~G~~ 77 (213)
T 1o5l_A 15 LKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVS--ENGKTL---------------EIDEIKPVQIIASG 77 (213)
T ss_dssp GGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEEC--TTSCEE---------------EEEEECSSEESSGG
T ss_pred HHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEEC--CCCCEE---------------EEEEecCCCEeeeH
Confidence 4467888999999999999999999999999999999998753 334311 1334445 999999
Q ss_pred hhccCC-CCCC
Q psy5056 156 KLNRRT-TPEE 165 (182)
Q Consensus 156 all~~~-pr~~ 165 (182)
+++.+. ++.+
T Consensus 78 ~~~~~~~~~~~ 88 (213)
T 1o5l_A 78 FIFSSEPRFPV 88 (213)
T ss_dssp GTTSSSCBCSS
T ss_pred HHhcCCCCceE
Confidence 998765 6554
No 48
>2izx_A CAMP-dependent protein kinase type II-alpha regulatory subunit; CAMP-binding, phosphorylation, nucleotide-binding, PKA, CAMP, anchor, kinase, acetylation; 1.3A {Homo sapiens} PDB: 2hwn_A
Probab=98.23 E-value=5.7e-07 Score=55.38 Aligned_cols=37 Identities=35% Similarity=0.812 Sum_probs=34.7
Q ss_pred CchhhHHHHHHHHHhhhhcCCCccccchhhhhhhhhh
Q psy5056 121 VPDELRDILLEFTISYLLEQPSDVIEYGVDFFTKLKL 157 (182)
Q Consensus 121 ~~~G~~~lL~~~t~~vl~~qp~~l~~~~~dyFGELal 157 (182)
++.|..++|..|++++++.||.|+..|+++||+.|+.
T Consensus 3 ip~~l~~lL~~~~~~vl~~qP~di~~f~a~yF~~l~~ 39 (41)
T 2izx_A 3 IPPGLTELLQGYTVEVLRQQPPDLVEFAVEYFTRLRE 39 (41)
T ss_dssp CCTTHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhh
Confidence 5789999999999999999999999999999999874
No 49
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=98.19 E-value=7.4e-07 Score=69.47 Aligned_cols=67 Identities=13% Similarity=0.003 Sum_probs=49.6
Q ss_pred HhhcccceecCCCEEEecCCCC--CeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhhhhhh
Q psy5056 81 IDAMFEKPVEAGDIVIRQGDDG--DFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFTKLKL 157 (182)
Q Consensus 81 ~d~m~~~~~~~Ge~II~qGd~G--d~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFGELal 157 (182)
...+..+.|++|++|+++|+.. +.+|+|.+|.+.++... ++|.+. .+..+.+ ++||+ ++
T Consensus 2 ~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~--~~G~~~---------------~~~~~~~g~~~G~-~~ 63 (202)
T 2zcw_A 2 TQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVD--EEGNAL---------------TLRLVRPGGFFGE-EA 63 (202)
T ss_dssp ----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEEC--TTSCEE---------------EEEEECTTCEECT-HH
T ss_pred CccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEEC--CCCcEE---------------EEEEecCCCEeee-hh
Confidence 4567889999999999999999 99999999999998753 334311 1334444 99999 88
Q ss_pred ccCCCCCC
Q psy5056 158 NRRTTPEE 165 (182)
Q Consensus 158 l~~~pr~~ 165 (182)
+.+.|+..
T Consensus 64 l~~~~~~~ 71 (202)
T 2zcw_A 64 LFGQERIY 71 (202)
T ss_dssp HHTCCBCS
T ss_pred cCCCCcce
Confidence 87777664
No 50
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=98.15 E-value=6.8e-07 Score=72.06 Aligned_cols=68 Identities=12% Similarity=0.052 Sum_probs=53.2
Q ss_pred HHHHHHHhhcccceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhh
Q psy5056 75 DQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFT 153 (182)
Q Consensus 75 ~~l~~i~d~m~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFG 153 (182)
+++..++..+..+.|++|++|++||+.++.+|+|.+|.+++++.. ++|.+. .+..+.+ ++||
T Consensus 23 ~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~--~~G~~~---------------~~~~~~~G~~~G 85 (250)
T 3e6c_C 23 EKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIF--EDGSEK---------------LLYYAGGNSLIG 85 (250)
T ss_dssp GGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEEC--TTSCEE---------------EEEEECTTCEEC
T ss_pred HHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEEC--CCCCEE---------------EEEEecCCCEEe
Confidence 567788899999999999999999999999999999999998753 334311 1333444 9999
Q ss_pred hhhhccCC
Q psy5056 154 KLKLNRRT 161 (182)
Q Consensus 154 ELall~~~ 161 (182)
+ ++.+.
T Consensus 86 ~--~l~~~ 91 (250)
T 3e6c_C 86 K--LYPTG 91 (250)
T ss_dssp C--CSCCS
T ss_pred e--ecCCC
Confidence 9 55544
No 51
>2kyg_A CAMP-dependent protein kinase type II-alpha regul subunit; protein/protein, homodimer bound to monomer, protein binding; NMR {Homo sapiens}
Probab=98.12 E-value=1.5e-06 Score=55.94 Aligned_cols=39 Identities=33% Similarity=0.770 Sum_probs=35.9
Q ss_pred cCchhhHHHHHHHHHhhhhcCCCccccchhhhhhhhhhc
Q psy5056 120 SVPDELRDILLEFTISYLLEQPSDVIEYGVDFFTKLKLN 158 (182)
Q Consensus 120 ~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~dyFGELall 158 (182)
.+|.++.+||+.|++++++.||.|+..|+++||+.|+..
T Consensus 10 ~ip~~l~~lL~~~~~evlr~qP~Di~~Faa~yF~~l~~~ 48 (50)
T 2kyg_A 10 QIPPGLTELLQGYTVEVLRQQPPDLVEFAVEYFTRLREA 48 (50)
T ss_dssp CCCTTHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHT
T ss_pred cCCccHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHc
Confidence 368899999999999999999999999999999998753
No 52
>2izy_A CAMP-dependent protein kinase regulatory subunit II; D/D, RII, PKA, acetylation, transferase, CAMP- binding, phosphorylation, nucleotide-binding; 2.2A {Mus musculus} SCOP: a.31.1.1 PDB: 1l6e_A 1r2a_A 2drn_A 2h9r_A
Probab=98.06 E-value=1.9e-06 Score=56.40 Aligned_cols=40 Identities=33% Similarity=0.782 Sum_probs=36.4
Q ss_pred cCchhhHHHHHHHHHhhhhcCCCccccchhhhhhhhhhcc
Q psy5056 120 SVPDELRDILLEFTISYLLEQPSDVIEYGVDFFTKLKLNR 159 (182)
Q Consensus 120 ~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~dyFGELall~ 159 (182)
.+|.|...+|..|++++++.||.|+..|+++||+.|+..+
T Consensus 5 ~ip~~l~~lL~~f~~evlr~qP~Di~~Faa~YF~~L~~~~ 44 (54)
T 2izy_A 5 QIPPGLTELLQGYTVEVLRQQPPDLVDFAVEYFTRLREAR 44 (54)
T ss_dssp CCCTTHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH
T ss_pred ccCccHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhH
Confidence 3688999999999999999999999999999999987643
No 53
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=98.04 E-value=5.9e-07 Score=77.03 Aligned_cols=67 Identities=19% Similarity=0.364 Sum_probs=0.0
Q ss_pred HHHHHHHhhcccceecCCCEEEecCCCCCeEEEEEeCceeeeccccCchhhHHHHHHHHHhhhhcCCCccccchh-hhhh
Q psy5056 75 DQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGV-DFFT 153 (182)
Q Consensus 75 ~~l~~i~d~m~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~~~~~~G~~~lL~~~t~~vl~~qp~~l~~~~~-dyFG 153 (182)
+++..++..+..+.|++|+.|++|||.++.+|+|.+|.++++... . ..+.+ ++||
T Consensus 242 ~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~---~---------------------~~l~~G~~fG 297 (355)
T 3beh_A 242 AVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN---P---------------------VELGPGAFFG 297 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeeEEEEEECC---e---------------------eEECCCCEEe
Confidence 677788899999999999999999999999999999999998642 0 01223 9999
Q ss_pred hhhhccCCCCCC
Q psy5056 154 KLKLNRRTTPEE 165 (182)
Q Consensus 154 ELall~~~pr~~ 165 (182)
|.+++.+.|+.+
T Consensus 298 e~~~l~~~~~~~ 309 (355)
T 3beh_A 298 EMALISGEPRSA 309 (355)
T ss_dssp ------------
T ss_pred ehHHhCCCCcce
Confidence 999999988875
No 54
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=97.99 E-value=1.8e-06 Score=67.95 Aligned_cols=42 Identities=10% Similarity=0.232 Sum_probs=39.2
Q ss_pred HHHHHHHhhcccceecCCCEEEecCCCCCeEEEEEeCceeee
Q psy5056 75 DQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIESMNRAQL 116 (182)
Q Consensus 75 ~~l~~i~d~m~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~ 116 (182)
+++..++..+..+.|++|++|++|||.++.+|+|.+|.++++
T Consensus 18 ~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~ 59 (220)
T 2fmy_A 18 EEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVY 59 (220)
T ss_dssp GGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEE
T ss_pred HHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEE
Confidence 567788889999999999999999999999999999999995
No 55
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=97.82 E-value=4.3e-06 Score=66.04 Aligned_cols=42 Identities=12% Similarity=0.079 Sum_probs=38.7
Q ss_pred HHHHHHHhhcccceecCCCEEEecCCCCCeEEEEEeCceeee
Q psy5056 75 DQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIESMNRAQL 116 (182)
Q Consensus 75 ~~l~~i~d~m~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~ 116 (182)
+++..++..+..+.|++|++|++||+.++.+|+|.+|.++++
T Consensus 14 ~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~ 55 (222)
T 1ft9_A 14 PDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVY 55 (222)
T ss_dssp TTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEE
T ss_pred HHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEE
Confidence 456677888999999999999999999999999999999996
No 56
>4f9k_A CAMP-dependent protein kinase type I-beta regulat subunit; structural genomics, PSI-biology; 2.80A {Homo sapiens} PDB: 2ezw_A 3im3_A 3im4_A
Probab=97.12 E-value=9.4e-05 Score=53.43 Aligned_cols=37 Identities=14% Similarity=0.381 Sum_probs=33.9
Q ss_pred hhhHHHHHHHHHhhhhcCCCccccchhhhhhhhhhcc
Q psy5056 123 DELRDILLEFTISYLLEQPSDVIEYGVDFFTKLKLNR 159 (182)
Q Consensus 123 ~G~~~lL~~~t~~vl~~qp~~l~~~~~dyFGELall~ 159 (182)
.|..+||+.|++.+|+.+|+|++.|+++||..|...+
T Consensus 47 hgI~eLLqe~tv~Ll~~RPeDPv~FLaeYF~kL~~~r 83 (95)
T 4f9k_A 47 HGIQQVLKDCIVHLCISKPERPMKFLREHFEKLEKEE 83 (95)
T ss_dssp TCTTTTTHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999996543
No 57
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=32.48 E-value=60 Score=22.32 Aligned_cols=35 Identities=11% Similarity=-0.114 Sum_probs=26.5
Q ss_pred cccceecCCCEEEecCCCCCeEEEEEeCceeeecc
Q psy5056 84 MFEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGK 118 (182)
Q Consensus 84 m~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~ 118 (182)
+....+.+|..+-.---.++.|+.|.+|++++...
T Consensus 38 v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~ 72 (114)
T 3fjs_A 38 VMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGVD 72 (114)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEESCEEEEET
T ss_pred EEEEEECCCCccCceeCCCcEEEEEEECEEEEEEC
Confidence 44567788887665555678999999999998753
No 58
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=26.15 E-value=82 Score=24.49 Aligned_cols=35 Identities=9% Similarity=0.021 Sum_probs=28.9
Q ss_pred cccceecCCCEEEecCCCCCeEEEEEeCceeeecc
Q psy5056 84 MFEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGK 118 (182)
Q Consensus 84 m~~~~~~~Ge~II~qGd~Gd~fYII~~G~v~V~k~ 118 (182)
+....+.+|+.+=..--+++.++.|.+|+++++-.
T Consensus 39 ~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i~ 73 (227)
T 3rns_A 39 ISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFIE 73 (227)
T ss_dssp EEEEEECTTCEEEECSCSSCEEEEEEESEEEEEES
T ss_pred EEEEEECCCCccCccccCCCEEEEEEeCEEEEEEC
Confidence 45667899998877777899999999999998753
Done!