RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5056
(182 letters)
>gnl|CDD|213046 cd12099, DD_RII_PKA, Dimerization/Docking domain of the Type II
Regulatory subunit of cAMP-dependent protein kinase.
cAMP-dependent protein kinase (PKA) is a
serine/threonine kinase (STK), catalyzing the transfer
of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
inactive PKA holoenzyme is a heterotetramer composed of
two phosphorylated and active catalytic subunits with a
dimer of regulatory (R) subunits. Activation is achieved
through the binding of the important second messenger
cAMP to the R subunits, which leads to the dissociation
of PKA into the R dimer and two active subunits. There
are two classes of R subunits, RI and RII; each exists
as two isoforms (alpha and beta) from distinct genes.
These functionally non-redundant R isoforms allow for
specificity in PKA signaling. RII subunits contain a
phosphorylation site in their inhibitory site and are
both substrates and inhibitors. RIIalpha plays a role in
the association and dissociation of PKA with the
centrosome during interphase and mitosis, respectively.
RIIbeta plays an important role in adipocytes and
neuronal tissues. The R subunit contains an N-terminal
dimerization/docking (D/D) domain, a linker with an
inhibitory sequence, and two c-AMP binding domains. The
D/D domain dimerizes to form a four-helix bundle that
serves as a docking site for A-kinase-anchoring proteins
(AKAPs), which facilitates the localization of PKA to
specific sites in the cell. PKA is present ubiquitously
in cells and interacts with many different downstream
targets. It plays a role in the regulation of diverse
processes such as growth, development, memory,
metabolism, gene expression, immunity, and lipolysis.
Length = 39
Score = 51.5 bits (124), Expect = 8e-10
Identities = 16/39 (41%), Positives = 28/39 (71%)
Query: 121 VPDELRDILLEFTISYLLEQPSDVIEYGVDFFTKLKLNR 159
+P L ++L +FT+ L EQPSD++++ ++FTKL+ R
Sbjct: 1 IPPGLTELLQDFTVEVLREQPSDLVDFAAEYFTKLREER 39
>gnl|CDD|197516 smart00100, cNMP, Cyclic nucleotide-monophosphate binding domain.
Catabolite gene activator protein (CAP) is a prokaryotic
homologue of eukaryotic cNMP-binding domains, present in
ion channels, and cNMP-dependent kinases.
Length = 120
Score = 46.2 bits (110), Expect = 4e-07
Identities = 15/39 (38%), Positives = 27/39 (69%)
Query: 72 AESDQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIES 110
+++++ ++ DA+ AG+++IRQGD GD FY+I S
Sbjct: 5 LDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIIVS 43
>gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription
factors; members include CAP (or cAMP receptor protein
(CRP)), which binds cAMP, FNR (fumarate and nitrate
reduction), which uses an iron-sulfur cluster to sense
oxygen) and CooA, a heme containing CO sensor. In all
cases binding of the effector leads to conformational
changes and the ability to activate transcription.
Cyclic nucleotide-binding domain similar to CAP are also
present in cAMP- and cGMP-dependent protein kinases
(cAPK and cGPK) and vertebrate cyclic nucleotide-gated
ion-channels. Cyclic nucleotide-monophosphate binding
domain; proteins that bind cyclic nucleotides (cAMP or
cGMP) share a structural domain of about 120 residues;
the best studied is the prokaryotic catabolite gene
activator, CAP, where such a domain is known to be
composed of three alpha-helices and a distinctive
eight-stranded, antiparallel beta-barrel structure;
three conserved glycine residues are thought to be
essential for maintenance of the structural integrity of
the beta-barrel; CooA is a homodimeric transcription
factor that belongs to CAP family; cAMP- and
cGMP-dependent protein kinases (cAPK and cGPK) contain
two tandem copies of the cyclic nucleotide-binding
domain; cAPK's are composed of two different subunits, a
catalytic chain and a regulatory chain, which contains
both copies of the domain; cGPK's are single chain
enzymes that include the two copies of the domain in
their N-terminal section; also found in vertebrate
cyclic nucleotide-gated ion-channels.
Length = 115
Score = 43.9 bits (104), Expect = 3e-06
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 70 SLAESDQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSV 121
S + +++ ++ DA+ E+ AG+++IRQGD D Y++ S G V V
Sbjct: 3 SGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLS------GSVEV 48
>gnl|CDD|213051 cd12104, DD_RIIbeta_PKA, Dimerization/Docking domain of the Type II
beta Regulatory subunit of cAMP-dependent protein
kinase. cAMP-dependent protein kinase (PKA) is a
serine/threonine kinase (STK), catalyzing the transfer
of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
inactive PKA holoenzyme is a heterotetramer composed of
two phosphorylated and active catalytic subunits with a
dimer of regulatory (R) subunits. Activation is achieved
through the binding of the important second messenger
cAMP to the R subunits, which leads to the dissociation
of PKA into the R dimer and two active subunits. There
are two classes of R subunits, RI and RII; each exists
as two isoforms (alpha and beta) from distinct genes.
These functionally non-redundant R isoforms allow for
specificity in PKA signaling. RII subunits contain a
phosphorylation site in their inhibitory site and are
both substrates and inhibitors. RIIbeta plays an
important role in adipocytes and neuronal tissues. Mice
deficient with RIIbeta have small fat cells, and are
resistant to obesity, diet-induced diabetes, and
alcohol-induced motor defects. The R subunit contains an
N-terminal dimerization/docking (D/D) domain, a linker
with an inhibitory sequence, and two c-AMP binding
domains. The D/D domain dimerizes to form a four-helix
bundle that serves as a docking site for
A-kinase-anchoring proteins (AKAPs), which facilitates
the localization of PKA to specific sites in the cell.
PKA is present ubiquitously in cells and interacts with
many different downstream targets. It plays a role in
the regulation of diverse processes such as growth,
development, memory, metabolism, gene expression,
immunity, and lipolysis.
Length = 41
Score = 36.0 bits (83), Expect = 6e-04
Identities = 14/38 (36%), Positives = 26/38 (68%)
Query: 119 VSVPDELRDILLEFTISYLLEQPSDVIEYGVDFFTKLK 156
+ +P+ L ++L FT+ L QP D++E+ + +FT+LK
Sbjct: 1 IEIPEGLTELLQGFTVEVLRSQPGDLLEFALQYFTRLK 38
>gnl|CDD|202148 pfam02197, RIIa, Regulatory subunit of type II PKA R-subunit.
Length = 38
Score = 35.4 bits (82), Expect = 9e-04
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 124 ELRDILLEFTISYLLEQPSDVIEYGVDFFTKLKLNRR 160
L+ +L + T+ L QPSD +++ D+F KL+ R
Sbjct: 2 GLQALLEDLTVEVLRAQPSDPVQFAADYFEKLEEQRA 38
>gnl|CDD|197697 smart00394, RIIa, RIIalpha, Regulatory subunit portion of type II
PKA R-subunit. RIIalpha, Regulatory subunit portion of
type II PKA R-subunit. Contains dimerisation interface
and binding site for A-kinase-anchoring proteins
(AKAPs).
Length = 38
Score = 35.0 bits (81), Expect = 0.001
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 124 ELRDILLEFTISYLLEQPSDVIEYGVDFFTKLKLNRR 160
L+ +L + T+ L QPSD++++ D+F KL+ R
Sbjct: 2 GLQALLEDLTVEVLRAQPSDLVQFAADYFEKLEEQRA 38
>gnl|CDD|213050 cd12103, DD_RIIalpha_PKA, Dimerization/Docking domain of the Type
II alpha Regulatory subunit of cAMP-dependent protein
kinase. cAMP-dependent protein kinase (PKA) is a
serine/threonine kinase (STK), catalyzing the transfer
of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
inactive PKA holoenzyme is a heterotetramer composed of
two phosphorylated and active catalytic subunits with a
dimer of regulatory (R) subunits. Activation is achieved
through the binding of the important second messenger
cAMP to the R subunits, which leads to the dissociation
of PKA into the R dimer and two active subunits. There
are two classes of R subunits, RI and RII; each exists
as two isoforms (alpha and beta) from distinct genes.
These functionally non-redundant R isoforms allow for
specificity in PKA signaling. RII subunits contain a
phosphorylation site in their inhibitory site and are
both substrates and inhibitors. RIIalpha plays a role in
the association and dissociation of PKA with the
centrosome during interphase and mitosis, respectively.
It is also involved in endosome-to-Golgi and Golgi-to-ER
transport. The R subunit contains an N-terminal
dimerization/docking (D/D) domain, a linker with an
inhibitory sequence, and two c-AMP binding domains. The
D/D domain dimerizes to form a four-helix bundle that
serves as a docking site for A-kinase-anchoring proteins
(AKAPs), which facilitates the localization of PKA to
specific sites in the cell. PKA is present ubiquitously
in cells and interacts with many different downstream
targets. It plays a role in the regulation of diverse
processes such as growth, development, memory,
metabolism, gene expression, immunity, and lipolysis.
Length = 41
Score = 34.5 bits (79), Expect = 0.002
Identities = 14/41 (34%), Positives = 28/41 (68%)
Query: 119 VSVPDELRDILLEFTISYLLEQPSDVIEYGVDFFTKLKLNR 159
+ +P L ++L +T+ L +QP D++E+ V++FT+L+ R
Sbjct: 1 IQIPPGLTELLQGYTVEVLRQQPPDLVEFAVEYFTRLREAR 41
>gnl|CDD|215664 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain.
Length = 91
Score = 35.0 bits (81), Expect = 0.003
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 6/36 (16%)
Query: 86 EKPVEAGDIVIRQGDDGDFFYVIESMNRAQLGKVSV 121
+ + G+++ R+GD D Y++ S GKV V
Sbjct: 1 LRSFKKGEVIFREGDPADSLYIVLS------GKVKV 30
>gnl|CDD|213043 cd12084, DD_R_PKA, Dimerization/Docking domain of the Regulatory
subunit of cAMP-dependent protein kinase and similar
domains. cAMP-dependent protein kinase (PKA) is a
serine/threonine kinase (STK), catalyzing the transfer
of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
inactive PKA holoenzyme is a heterotetramer composed of
two phosphorylated and active catalytic subunits with a
dimer of regulatory (R) subunits. Activation is achieved
through the binding of the important second messenger
cAMP to the R subunits, which leads to the dissociation
of PKA into the R dimer and two active subunits. There
are two classes of R subunits, RI and RII; each exists
as two isoforms (alpha and beta) from distinct genes.
These functionally non-redundant R isoforms allow for
specificity in PKA signaling. The R subunit contains an
N-terminal dimerization/docking (D/D) domain, a linker
with an inhibitory sequence (IS), and two c-AMP binding
domains. RI and RII subunits are distinguished by their
IS; RII subunits contain a phosphorylation site and are
both substrates and inhibitors while RI subunits are
pseudo-substrates. RI subunits require ATP and Mg ions
to form a stable holoenzyme while RII subunits do not.
The D/D domain dimerizes to form a four-helix bundle
that serves as a docking site for A-kinase-anchoring
proteins (AKAPs), which facilitates the localization of
PKA to specific sites in the cell. PKA is present
ubiquitously in cells and interacts with many different
downstream targets. It plays a role in the regulation of
diverse processes such as growth, development, memory,
metabolism, gene expression, immunity, and lipolysis.
Length = 37
Score = 33.4 bits (77), Expect = 0.004
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 124 ELRDILLEFTISYLLEQPSDVIEYGVDFFTKLK 156
++L ++T L QP D++++ ++F KL
Sbjct: 2 GFPELLKDYTREVLRAQPEDILQFAAEYFEKLA 34
>gnl|CDD|223736 COG0664, Crp, cAMP-binding proteins - catabolite gene activator and
regulatory subunit of cAMP-dependent protein kinases
[Signal transduction mechanisms].
Length = 214
Score = 35.2 bits (81), Expect = 0.009
Identities = 7/37 (18%), Positives = 20/37 (54%)
Query: 74 SDQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIES 110
S+ + + + + + G+++ +G++ D Y+I S
Sbjct: 13 SELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILS 49
>gnl|CDD|213047 cd12100, DD_CABYR_SP17, Dimerization/Docking domain of the sperm
fibrous sheath proteins, Calcium-Binding
tYrosine-phosphorylation Regulated protein and Sperm
Protein 17. CABYR and SP17 are naturally located in
human sperm fibrous sheath (FS). CABYR was originally
isolated from spermatoza and was thought to be
testis-specific, but has been recently been observed in
lung and brain tumors. It is a polymorphic calcium
binding protein that is phosphorylated during
capacitation. SP17 plays an important role in the
interaction of sperm with the zona pellucida during
fertilization. It also promotes cell-cell adhesion. SP17
is found in various human tumors of unrelated
histological origin including metastatic squamous cell
carcinoma, multiple myeloma, ovarian cancer, primary
nervous system tumors, among others. Both CABYR and SP17
contain an N-terminal dimerization/docking (D/D) domain
with similarity to the D/D domain of the R subunit of
cAMP-dependent protein kinase (PKA). The D/D domain of
the R subunit dimerizes to form a four-helix bundle that
serves as a docking site for A-kinase-anchoring proteins
(AKAPs), which facilitates the localization of PKA to
specific sites in the cell. The D/D domain of CABYR and
SP17 have been shown to bind to AKAP3, a protein that is
also associated to the FS of mammalian spermatozoa.
Length = 39
Score = 30.3 bits (69), Expect = 0.062
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 121 VPDELRDILLEFTISYLLEQPSDVIEYGVDFFTKLKLNRR 160
VP R++L L EQP D+ E+ D+F +L L R
Sbjct: 1 VPPGFRNLLEGLAREVLREQPDDIYEFAADYFQEL-LKLR 39
>gnl|CDD|217641 pfam03616, Glt_symporter, Sodium/glutamate symporter.
Length = 368
Score = 30.0 bits (68), Expect = 0.60
Identities = 20/111 (18%), Positives = 39/111 (35%), Gaps = 23/111 (20%)
Query: 30 PVARFNTRRKSVYAESYNPEDDEEDEGPKVIYPKSDEQR----RSLAESDQMNDV----- 80
PVAR+ +R + PE D D+ + + + E+R L E+ + +
Sbjct: 177 PVARYLIKR---NSLKPQPECDTRDDALQEAFERPQEKRKITANVLIETIAIILICLVVG 233
Query: 81 --IDAMFEK-----PVEAG----DIVIRQGDDGDFFYVIESMNRAQLGKVS 120
+ + + P +++R F + + LG VS
Sbjct: 234 KYLSDLVKGTGLMLPTFVWCLFVGVILRNTLSLAFKFRVFEPAVDVLGDVS 284
>gnl|CDD|239167 cd02766, MopB_3, The MopB_3 CD includes a group of related
uncharacterized bacterial and archaeal
molybdopterin-binding oxidoreductase-like domains with a
putative N-terminal iron-sulfur [4Fe-4S] cluster binding
site and molybdopterin cofactor binding site. These
members belong to the molybdopterin_binding (MopB)
superfamily of proteins.
Length = 501
Score = 29.5 bits (67), Expect = 1.1
Identities = 21/90 (23%), Positives = 32/90 (35%), Gaps = 13/90 (14%)
Query: 80 VIDAMFEKPVEAGD--IVIRQGDDGDFFY----VIESMN---RAQLGKVSV-PDELRDIL 129
VID D I IR G DG V+ R L + + +EL+ L
Sbjct: 191 VIDPYRTATAARADLHIQIRPGTDGALALGVAKVLFREGLYDRDFLARHTEGFEELKAHL 250
Query: 130 LEFTISYLLEQ---PSDVIEYGVDFFTKLK 156
+T + E ++ IE + + K
Sbjct: 251 ETYTPEWAAEITGVSAEEIEELARLYGEAK 280
>gnl|CDD|237259 PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.
Length = 830
Score = 28.9 bits (66), Expect = 1.7
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 58 KVIYPKSDEQRRSLAESDQMNDVIDAMFEKPVEA 91
KVIY QR + E + +++ I M E +E
Sbjct: 639 KVIY----AQRNEILEGEDLSETILDMREDVIED 668
>gnl|CDD|202331 pfam02657, SufE, Fe-S metabolism associated domain. This family
consists of the SufE-related proteins. These have been
implicated in Fe-S metabolism and export).
Length = 125
Score = 27.3 bits (61), Expect = 2.3
Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 10/70 (14%)
Query: 94 IVIRQGDDGDFFYVIESMNRAQLGKVSVPDELRDILLEFTISYLLEQPSDVIEYGVDFFT 153
+ +DG + +S R G ++ Y + P++++ + DFF
Sbjct: 48 LHYDVSEDGIVHFFGDSEARIVRGLAAL----------LFAGYDGKTPAEILTFDPDFFE 97
Query: 154 KLKLNRRTTP 163
+L L + +P
Sbjct: 98 ELGLAQHLSP 107
>gnl|CDD|183004 PRK11161, PRK11161, fumarate/nitrate reduction transcriptional
regulator; Provisional.
Length = 235
Score = 27.4 bits (61), Expect = 3.6
Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 73 ESDQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIES 110
E DQ++++I+ +KP++ G + + GD+ Y I S
Sbjct: 28 ELDQLDNIIER--KKPIQKGQTLFKAGDELKSLYAIRS 63
>gnl|CDD|132995 cd00218, GlcAT-I, Beta1,3-glucuronyltransferase I (GlcAT-I) is
involved in the initial steps of proteoglycan synthesis.
Beta1,3-glucuronyltransferase I (GlcAT-I) domain;
GlcAT-I is a Key enzyme involved in the initial steps of
proteoglycan synthesis. GlcAT-I catalyzes the transfer
of a glucuronic acid moiety from the uridine
diphosphate-glucuronic acid (UDP-GlcUA) to the common
linkage region of trisaccharide
Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The
enzyme has two subdomains that bind the donor and
acceptor substrate separately. The active site is
located at the cleft between both subdomains in which
the trisaccharide molecule is oriented perpendicular to
the UDP. This family has been classified as
Glycosyltransferase family 43 (GT-43).
Length = 223
Score = 27.6 bits (62), Expect = 3.7
Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 8/59 (13%)
Query: 8 HSAEVSELPLHL-----SLRSTYFQEPPVARFNTRRKSVYAESYNPED---DEEDEGPK 58
H+A E P + + S +PP A F K Y ES E D ++ P
Sbjct: 149 HTAWKPERPFPIDMAGFAFNSKLLWDPPRAVFPYSAKRGYQESSFLEQLVLDRKELEPL 207
>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated.
Length = 573
Score = 27.7 bits (62), Expect = 4.3
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 105 FYVIESMNRAQLGKVSVPDELRDILLE 131
FY ++ + R QLGKV E+R+ LLE
Sbjct: 544 FYHVDELPRDQLGKV-RRREVREELLE 569
>gnl|CDD|132835 cd00147, cPLA2_like, Cytosolic phospholipase A2, catalytic domain;
hydrolyses arachidonyl phospholipids. Catalytic domain
of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4)
hydrolyzes the sn-2-acyl ester bond of phospholipids to
release arachidonic acid. At the active site, cPLA2
contains a serine nucleophile through which the
catalytic mechanism is initiated. The active site is
partially covered by a solvent-accessible flexible lid.
cPLA2 displays interfacial activation as it exists in
both "closed lid" and "open lid" forms. Movement of the
cPLA2 lid possibly exposes a greater hydrophobic surface
and the active site. cPLA2 belongs to the alpha-beta
hydrolase family which is identified by a characteristic
nucleophile elbow with a consensus sequence of
Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu =
nucleophile). Calcium is required for cPLA2 to bind with
membranes or phospholipids. Group IV cPLA2 includes six
intercellular enzymes: cPLA2alpha, cPLA2beta,
cPLA2gamma, cPLA2delta, cPLA2epsilon, and cPLA2zeta.
Length = 438
Score = 27.2 bits (61), Expect = 4.9
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 8/61 (13%)
Query: 9 SAEVSELPLHLSLRSTYFQE--------PPVARFNTRRKSVYAESYNPEDDEEDEGPKVI 60
SA+ + P L L +TY ++ P + T E Y ++ + P V+
Sbjct: 322 SADDPDWPNGLKLVATYERQASSNGIPFPKIPDSVTFDNLGLKECYVFFGCDDPDAPLVV 381
Query: 61 Y 61
Y
Sbjct: 382 Y 382
>gnl|CDD|219444 pfam07516, SecA_SW, SecA Wing and Scaffold domain. SecA protein
binds to the plasma membrane where it interacts with
proOmpA to support translocation of proOmpA through the
membrane. SecA protein achieves this translocation, in
association with SecY protein, in an ATP dependent
manner. This family is composed of two C-terminal alpha
helical subdomains: the wing and scaffold subdomains.
Length = 213
Score = 26.8 bits (60), Expect = 5.8
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 58 KVIYPKSDEQRRSLAESDQMNDVIDAMFEKPVEA 91
KVIY QR + E + + ++I M E ++
Sbjct: 41 KVIY----AQRNEILEGEDLKEIILEMIEDVIDD 70
>gnl|CDD|176714 cd09012, Glo_EDI_BRP_like_24, This conserved domain belongs to a
superfamily including the bleomycin resistance protein,
glyoxalase I, and type I ring-cleaving dioxygenases.
This protein family belongs to a conserved domain
superfamily that is found in a variety of structurally
related metalloproteins, including the bleomycin
resistance protein, glyoxalase I, and type I
ring-cleaving dioxygenases. A bound metal ion is
required for protein activities for the members of this
superfamily. A variety of metal ions have been found in
the catalytic centers of these proteins including
Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein
superfamily contains members with or without domain
swapping.
Length = 124
Score = 26.4 bits (59), Expect = 5.8
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 82 DAMFEKPVEAGDIVIRQGDDGDFFY 106
D + EK + AG R+ D F Y
Sbjct: 83 DELVEKALAAGGKEFREPQDHGFMY 107
>gnl|CDD|178459 PLN02868, PLN02868, acyl-CoA thioesterase family protein.
Length = 413
Score = 26.6 bits (59), Expect = 8.0
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 90 EAGDIVIRQGDDGDFFYVI 108
G+ V+R+G+ GD Y I
Sbjct: 37 GKGEYVVREGEPGDGLYFI 55
>gnl|CDD|201747 pfam01361, Tautomerase, Tautomerase enzyme. This family includes
the enzyme 4-oxalocrotonate tautomerase that catalyzes
the ketonisation of 2-hydroxymuconate to
2-oxo-3-hexenedioate.
Length = 60
Score = 24.9 bits (55), Expect = 8.5
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 8/51 (15%)
Query: 58 KVIYPKSDEQRRSLAESDQMNDVIDAMFE---KPVEAGDIVIRQGDDGDFF 105
K+ +SDEQ+ +L V +A+ E P EA +VI + ++
Sbjct: 6 KLFEGRSDEQKAALIR-----RVTEAIVEALGAPREAIVVVIEEVPPENWG 51
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.135 0.381
Gapped
Lambda K H
0.267 0.0718 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,750,768
Number of extensions: 934986
Number of successful extensions: 713
Number of sequences better than 10.0: 1
Number of HSP's gapped: 713
Number of HSP's successfully gapped: 41
Length of query: 182
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 91
Effective length of database: 6,901,388
Effective search space: 628026308
Effective search space used: 628026308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (25.4 bits)