RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5056
(182 letters)
>d2hwna1 a.31.1.1 (A:5-43) cAMP-dependent protein kinase type II
regulatory subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 39
Score = 52.0 bits (125), Expect = 1e-10
Identities = 13/39 (33%), Positives = 27/39 (69%)
Query: 121 VPDELRDILLEFTISYLLEQPSDVIEYGVDFFTKLKLNR 159
+P L ++L +T+ L +QP D++++ V++FT+L+ R
Sbjct: 1 IPPGLTELLQGYTVEVLRQQPPDLVDFAVEYFTRLREAR 39
>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 136
Score = 52.8 bits (126), Expect = 6e-10
Identities = 31/67 (46%), Positives = 43/67 (64%), Gaps = 12/67 (17%)
Query: 58 KVIYPKSDEQRRSLAES------------DQMNDVIDAMFEKPVEAGDIVIRQGDDGDFF 105
++I+PK+D+QR L E+ +QM+ V+DAMFEK V+ G+ VI QGDDGD F
Sbjct: 1 RIIHPKTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNF 60
Query: 106 YVIESMN 112
YVI+
Sbjct: 61 YVIDRGT 67
>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A
{Cow (Bos taurus) [TaxId: 9913]}
Length = 136
Score = 45.5 bits (107), Expect = 3e-07
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 12/66 (18%)
Query: 58 KVIYPKSDEQRRSLAES------------DQMNDVIDAMFEKPVEAGDIVIRQGDDGDFF 105
+ + PK + +LA++ ++ +D+ DAMF AG+ VI+QGD+GD F
Sbjct: 5 RKVIPKDYKTMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNF 64
Query: 106 YVIESM 111
YVI+
Sbjct: 65 YVIDQG 70
>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 134
Score = 37.5 bits (86), Expect = 2e-04
Identities = 5/38 (13%), Positives = 14/38 (36%)
Query: 76 QMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIESMNR 113
++ ++ + A +I GD + + I +
Sbjct: 4 HLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSV 41
>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1
and 3 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 124
Score = 35.5 bits (81), Expect = 0.001
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 8/48 (16%)
Query: 64 SDEQRRSLAESDQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIESM 111
S +R LA +FE + G ++ QG++G +Y+I
Sbjct: 22 STTVKRELAGV--------LIFESHAKGGTVLFNQGEEGTSWYIILKG 61
>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396,
N-terminal domain {Porphyromonas gingivalis [TaxId:
837]}
Length = 142
Score = 35.6 bits (81), Expect = 0.001
Identities = 4/38 (10%), Positives = 13/38 (34%)
Query: 75 DQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIESMN 112
++ + + P + V +GD + + +
Sbjct: 15 EERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGK 52
>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 132
Score = 34.8 bits (79), Expect = 0.002
Identities = 6/39 (15%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 73 ESD-QMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIES 110
++D + + + +I QG+ + Y I
Sbjct: 1 QTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVK 39
>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 147
Score = 33.2 bits (75), Expect = 0.006
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 73 ESDQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIESM 111
E + V+D + K G+ +I QGD D F+++ES
Sbjct: 14 EVSERLKVVDVIGTKVYNDGEQIIAQGDSADSFFIVESG 52
>d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK
{Desulfitobacterium hafniense [TaxId: 49338]}
Length = 139
Score = 32.7 bits (73), Expect = 0.009
Identities = 4/41 (9%), Positives = 13/41 (31%)
Query: 70 SLAESDQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIES 110
+ +++ + + G VI G++ +
Sbjct: 10 NFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVE 50
>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1
and 3 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 155
Score = 32.9 bits (74), Expect = 0.010
Identities = 8/37 (21%), Positives = 18/37 (48%)
Query: 75 DQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIESM 111
+ + + + + +E G + RQGD G +Y + +
Sbjct: 38 NLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAG 74
>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti
[TaxId: 381]}
Length = 133
Score = 32.4 bits (73), Expect = 0.012
Identities = 8/34 (23%), Positives = 19/34 (55%)
Query: 75 DQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVI 108
+ +++ A+ + V AG ++ R G+ GD + +
Sbjct: 25 AVLVEIVRALRARTVPAGAVICRIGEPGDRMFFV 58
>d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator
TM1171, N-terminal domain {Thermotoga maritima [TaxId:
2336]}
Length = 129
Score = 30.7 bits (68), Expect = 0.041
Identities = 5/35 (14%), Positives = 12/35 (34%)
Query: 76 QMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIES 110
+ ++ G+IV Q D + ++
Sbjct: 2 DLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLE 36
>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A
{Cow (Bos taurus) [TaxId: 9913]}
Length = 132
Score = 30.1 bits (67), Expect = 0.077
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 73 ESDQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVIESMNR 113
+ + V DA+ E G ++ QG+ GD F++I +
Sbjct: 14 DKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSA 54
>d2zcwa2 b.82.3.2 (A:6-117) Transcriptional regulator TTHA1359,
N-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 112
Score = 29.9 bits (66), Expect = 0.080
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 89 VEAGDIVIRQGDDG--DFFYVIESMN 112
+AGD+++ G G D Y +
Sbjct: 5 FKAGDVILYPGVPGPRDRAYRVLEGL 30
>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal
domain {Rhodospirillum rubrum [TaxId: 1085]}
Length = 132
Score = 29.2 bits (64), Expect = 0.14
Identities = 6/35 (17%), Positives = 10/35 (28%)
Query: 74 SDQMNDVIDAMFEKPVEAGDIVIRQGDDGDFFYVI 108
S K G +V D + +V+
Sbjct: 12 SPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVV 46
>d2oq0a1 b.40.16.1 (A:115-202) Gamma-interferon-inducible protein
Ifi-16 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 24.3 bits (53), Expect = 4.3
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 134 ISYLLEQPSDVIEYGVDFFTKLKLNRRTT 162
I L +Q S I YGV K +N++TT
Sbjct: 3 IDILHKQASGNIVYGVFMLHKKTVNQKTT 31
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.135 0.381
Gapped
Lambda K H
0.267 0.0416 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 695,562
Number of extensions: 32733
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 19
Length of query: 182
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 102
Effective length of database: 1,309,196
Effective search space: 133537992
Effective search space used: 133537992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.8 bits)