Query psy5057
Match_columns 87
No_of_seqs 120 out of 1087
Neff 10.6
Searched_HMMs 29240
Date Sat Aug 17 00:38:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5057.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5057hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3idb_B CAMP-dependent protein 99.9 1.4E-21 4.7E-26 106.9 11.4 86 1-86 61-146 (161)
2 3mdp_A Cyclic nucleotide-bindi 99.9 8.8E-22 3E-26 105.3 8.5 85 2-86 30-118 (142)
3 2pqq_A Putative transcriptiona 99.9 2.5E-21 8.6E-26 104.2 9.4 86 1-86 28-114 (149)
4 3dn7_A Cyclic nucleotide bindi 99.9 5E-21 1.7E-25 107.2 10.4 85 2-86 31-117 (194)
5 3gyd_A CNMP-BD protein, cyclic 99.9 6.9E-21 2.3E-25 106.6 10.3 86 1-86 62-148 (187)
6 3d0s_A Transcriptional regulat 99.9 1.7E-20 5.8E-25 107.2 11.7 86 2-87 30-116 (227)
7 2z69_A DNR protein; beta barre 99.9 4.6E-21 1.6E-25 103.7 8.5 86 1-86 35-122 (154)
8 4ev0_A Transcription regulator 99.8 1.6E-20 5.5E-25 106.5 10.5 86 1-86 22-108 (216)
9 3pna_A CAMP-dependent protein 99.8 3.5E-20 1.2E-24 100.7 11.2 83 1-87 61-143 (154)
10 3ocp_A PRKG1 protein; serine/t 99.8 2.4E-20 8.3E-25 99.7 10.4 82 1-86 46-127 (139)
11 3ryp_A Catabolite gene activat 99.8 2.4E-20 8.1E-25 105.4 10.4 86 1-86 19-106 (210)
12 2oz6_A Virulence factor regula 99.8 2.1E-20 7.1E-25 105.4 10.1 86 1-86 13-103 (207)
13 3fx3_A Cyclic nucleotide-bindi 99.8 3.2E-20 1.1E-24 106.6 10.6 86 1-86 34-120 (237)
14 1zyb_A Transcription regulator 99.8 4.1E-20 1.4E-24 106.1 11.0 86 2-87 44-131 (232)
15 2gau_A Transcriptional regulat 99.8 3.4E-20 1.2E-24 106.2 9.6 86 1-86 33-119 (232)
16 3iwz_A CAP-like, catabolite ac 99.8 6.4E-20 2.2E-24 104.8 10.8 86 1-86 34-121 (230)
17 1o5l_A Transcriptional regulat 99.8 4.6E-20 1.6E-24 104.8 9.9 86 1-86 22-109 (213)
18 3kcc_A Catabolite gene activat 99.8 6.2E-20 2.1E-24 107.0 10.6 86 1-86 69-156 (260)
19 3e97_A Transcriptional regulat 99.8 2.2E-20 7.6E-25 106.9 8.3 85 2-86 30-115 (231)
20 4f8a_A Potassium voltage-gated 99.8 9.7E-20 3.3E-24 99.1 10.3 82 1-86 50-133 (160)
21 3la7_A Global nitrogen regulat 99.8 1.3E-19 4.4E-24 104.7 11.4 85 2-86 44-131 (243)
22 3b02_A Transcriptional regulat 99.8 1E-19 3.6E-24 102.1 10.6 80 4-84 2-82 (195)
23 3dv8_A Transcriptional regulat 99.8 9.3E-20 3.2E-24 103.5 10.3 86 1-86 26-114 (220)
24 2ptm_A Hyperpolarization-activ 99.8 7.7E-20 2.6E-24 102.9 9.6 83 1-86 94-176 (198)
25 3tnp_B CAMP-dependent protein 99.8 2.1E-19 7.2E-24 110.9 11.5 86 1-86 168-253 (416)
26 4ava_A Lysine acetyltransferas 99.8 1.9E-19 6.5E-24 107.8 10.5 85 1-86 36-121 (333)
27 3shr_A CGMP-dependent protein 99.8 1.7E-19 5.9E-24 106.6 9.2 86 1-86 180-267 (299)
28 3ukn_A Novel protein similar t 99.8 2E-19 7E-24 102.1 9.0 82 1-86 98-181 (212)
29 1wgp_A Probable cyclic nucleot 99.8 2E-20 6.9E-25 99.7 4.3 86 1-86 29-125 (137)
30 3dkw_A DNR protein; CRP-FNR, H 99.8 2.5E-20 8.6E-25 106.3 4.7 86 1-86 32-119 (227)
31 2qcs_B CAMP-dependent protein 99.8 7.8E-19 2.7E-23 103.3 11.2 86 1-86 180-267 (291)
32 3e6c_C CPRK, cyclic nucleotide 99.8 7.9E-19 2.7E-23 101.7 10.9 83 1-86 32-115 (250)
33 3of1_A CAMP-dependent protein 99.8 4.9E-19 1.7E-23 101.8 9.7 84 1-87 148-231 (246)
34 3of1_A CAMP-dependent protein 99.8 5.5E-19 1.9E-23 101.6 9.3 83 1-87 30-112 (246)
35 3shr_A CGMP-dependent protein 99.8 9.3E-19 3.2E-23 103.5 10.4 82 1-86 62-143 (299)
36 1vp6_A CNBD, cyclic-nucleotide 99.8 3.7E-19 1.3E-23 94.8 7.6 80 1-86 34-113 (138)
37 3bpz_A Potassium/sodium hyperp 99.8 6.2E-19 2.1E-23 99.5 8.0 82 1-86 95-176 (202)
38 2bgc_A PRFA; bacterial infecti 99.8 2.2E-18 7.6E-23 99.2 10.2 84 2-86 19-106 (238)
39 3tnp_B CAMP-dependent protein 99.8 1.3E-18 4.6E-23 107.3 9.7 86 1-86 290-382 (416)
40 2d93_A RAP guanine nucleotide 99.8 2.3E-19 7.8E-24 95.5 5.5 82 2-87 40-123 (134)
41 2fmy_A COOA, carbon monoxide o 99.8 4.2E-18 1.4E-22 96.9 10.8 78 2-86 28-105 (220)
42 2zcw_A TTHA1359, transcription 99.8 2.2E-18 7.6E-23 97.0 8.7 80 2-83 6-88 (202)
43 2qcs_B CAMP-dependent protein 99.8 5.2E-18 1.8E-22 99.8 10.5 82 1-86 62-143 (291)
44 1ft9_A Carbon monoxide oxidati 99.8 9E-18 3.1E-22 95.7 10.9 79 1-86 23-101 (222)
45 4din_B CAMP-dependent protein 99.8 8.8E-19 3E-23 107.0 6.5 85 2-86 272-358 (381)
46 1o7f_A CAMP-dependent RAP1 gua 99.8 8.4E-18 2.9E-22 104.4 10.7 85 1-86 65-152 (469)
47 4din_B CAMP-dependent protein 99.7 2.5E-18 8.5E-23 105.1 6.5 82 1-86 153-234 (381)
48 1o7f_A CAMP-dependent RAP1 gua 99.7 6.6E-17 2.3E-21 100.4 10.0 80 4-86 364-444 (469)
49 4f7z_A RAP guanine nucleotide 99.7 9.8E-17 3.3E-21 107.1 11.3 85 1-86 65-152 (999)
50 4f7z_A RAP guanine nucleotide 99.7 7.1E-17 2.4E-21 107.7 9.7 81 4-87 364-445 (999)
51 3cf6_E RAP guanine nucleotide 99.7 7.3E-16 2.5E-20 100.1 10.3 82 3-87 58-140 (694)
52 3beh_A MLL3241 protein; transm 99.6 9.3E-17 3.2E-21 97.3 0.0 80 2-87 252-331 (355)
53 3rns_A Cupin 2 conserved barre 96.0 0.088 3E-06 30.0 9.1 66 3-78 41-106 (227)
54 3fjs_A Uncharacterized protein 94.9 0.16 5.4E-06 25.7 9.3 64 3-76 40-103 (114)
55 3es1_A Cupin 2, conserved barr 94.7 0.093 3.2E-06 29.0 4.9 45 4-52 84-128 (172)
56 1dgw_A Canavalin; duplicated s 94.4 0.13 4.6E-06 28.2 5.2 50 3-53 45-94 (178)
57 2ozj_A Cupin 2, conserved barr 94.4 0.21 7.3E-06 24.9 7.4 63 6-78 45-107 (114)
58 3h8u_A Uncharacterized conserv 93.8 0.32 1.1E-05 24.7 6.2 46 3-52 43-89 (125)
59 2f4p_A Hypothetical protein TM 93.6 0.4 1.4E-05 25.4 6.2 47 3-53 52-98 (147)
60 3lwc_A Uncharacterized protein 93.6 0.36 1.2E-05 24.8 6.8 44 4-53 45-88 (119)
61 2vqa_A SLL1358 protein, MNCA; 93.3 0.71 2.4E-05 27.9 7.4 51 3-53 56-107 (361)
62 2vqa_A SLL1358 protein, MNCA; 93.0 0.87 3E-05 27.5 7.6 51 3-53 238-289 (361)
63 1j58_A YVRK protein; cupin, de 92.9 0.96 3.3E-05 27.6 8.6 51 3-53 261-312 (385)
64 1j58_A YVRK protein; cupin, de 92.8 0.59 2E-05 28.6 6.6 51 3-53 83-133 (385)
65 2cav_A Protein (canavalin); vi 92.8 0.29 9.8E-06 31.0 5.2 49 4-53 91-139 (445)
66 2fqp_A Hypothetical protein BP 92.8 0.2 6.7E-06 24.5 3.7 47 3-53 22-70 (97)
67 1fxz_A Glycinin G1; proglycini 92.8 0.77 2.6E-05 29.4 7.1 50 3-52 342-393 (476)
68 1yfu_A 3-hydroxyanthranilate-3 92.5 0.7 2.4E-05 25.6 5.9 37 18-55 54-90 (174)
69 3c3v_A Arachin ARAH3 isoform; 92.4 0.88 3E-05 29.4 7.0 50 3-52 376-427 (510)
70 2d5f_A Glycinin A3B4 subunit; 92.2 0.89 3E-05 29.2 6.9 51 3-53 371-423 (493)
71 1uij_A Beta subunit of beta co 92.1 0.41 1.4E-05 30.0 5.2 49 3-52 53-101 (416)
72 1zvf_A 3-hydroxyanthranilate 3 92.0 0.82 2.8E-05 25.4 5.8 59 17-80 52-113 (176)
73 3fz3_A Prunin; TREE NUT allerg 91.8 1.1 3.8E-05 29.1 6.9 51 3-53 398-450 (531)
74 3ibm_A Cupin 2, conserved barr 91.7 0.89 3E-05 24.6 7.9 45 4-53 61-105 (167)
75 2qjv_A Uncharacterized IOLB-li 91.7 1.3 4.3E-05 26.3 7.8 75 3-81 33-111 (270)
76 4e2g_A Cupin 2 conserved barre 91.7 0.7 2.4E-05 23.4 6.3 45 3-52 45-89 (126)
77 2i45_A Hypothetical protein; n 91.5 0.46 1.6E-05 23.4 4.2 56 19-83 48-103 (107)
78 3rns_A Cupin 2 conserved barre 91.5 1.1 3.9E-05 25.4 8.0 65 3-77 157-222 (227)
79 2b8m_A Hypothetical protein MJ 91.2 0.44 1.5E-05 23.8 4.1 44 5-52 33-76 (117)
80 1o5u_A Novel thermotoga mariti 91.1 0.77 2.6E-05 22.8 5.9 44 4-53 36-79 (101)
81 2bnm_A Epoxidase; oxidoreducta 91.1 1.1 3.8E-05 24.6 6.1 48 5-53 123-173 (198)
82 2qnk_A 3-hydroxyanthranilate 3 90.6 1.4 4.9E-05 26.3 6.2 62 12-80 45-106 (286)
83 2ea7_A 7S globulin-1; beta bar 90.6 0.7 2.4E-05 29.1 5.2 50 3-53 65-114 (434)
84 3jzv_A Uncharacterized protein 90.5 0.82 2.8E-05 24.9 4.9 30 18-52 72-101 (166)
85 3ksc_A LEGA class, prolegumin; 90.5 2.3 7.9E-05 27.4 7.4 50 4-53 363-414 (496)
86 2gu9_A Tetracenomycin polyketi 90.4 0.89 3E-05 22.2 7.4 45 3-52 25-72 (113)
87 1vj2_A Novel manganese-contain 90.3 1 3.5E-05 22.9 5.5 43 5-52 54-96 (126)
88 2e9q_A 11S globulin subunit be 90.3 2.3 8E-05 27.1 7.4 51 3-53 326-378 (459)
89 1yhf_A Hypothetical protein SP 90.2 0.96 3.3E-05 22.4 9.1 66 3-78 44-109 (115)
90 2phl_A Phaseolin; plant SEED s 90.1 0.68 2.3E-05 28.9 4.8 48 3-51 56-103 (397)
91 3i7d_A Sugar phosphate isomera 90.1 1.3 4.6E-05 23.8 6.3 46 3-53 47-94 (163)
92 1lr5_A Auxin binding protein 1 90.0 1.3 4.4E-05 23.6 5.6 49 4-52 46-98 (163)
93 4b29_A Dimethylsulfoniopropion 90.0 1.1 3.8E-05 25.7 5.2 45 4-52 137-181 (217)
94 3d0j_A Uncharacterized protein 90.0 1.3 4.6E-05 23.6 8.0 61 15-80 46-109 (140)
95 3l2h_A Putative sugar phosphat 89.7 1.4 4.7E-05 23.5 6.0 44 4-52 51-96 (162)
96 3s7i_A Allergen ARA H 1, clone 89.7 0.85 2.9E-05 28.7 5.0 49 4-53 49-97 (418)
97 2vpv_A Protein MIF2, MIF2P; nu 89.5 1.6 5.5E-05 23.9 5.7 54 17-78 108-161 (166)
98 2pfw_A Cupin 2, conserved barr 89.3 1.2 4E-05 22.1 8.4 65 4-78 39-103 (116)
99 3kgl_A Cruciferin; 11S SEED gl 88.8 2.9 0.0001 26.8 6.9 50 4-53 328-379 (466)
100 1o4t_A Putative oxalate decarb 88.8 1.5 5.1E-05 22.6 6.0 44 4-52 62-106 (133)
101 1fi2_A Oxalate oxidase, germin 88.7 2 6.7E-05 23.9 9.2 51 3-53 76-130 (201)
102 3bu7_A Gentisate 1,2-dioxygena 88.7 2.6 9.1E-05 26.3 6.6 73 4-84 299-372 (394)
103 3es4_A Uncharacterized protein 88.5 0.57 2E-05 24.2 3.1 43 6-53 49-91 (116)
104 3bcw_A Uncharacterized protein 88.5 0.56 1.9E-05 24.3 3.1 30 20-53 69-98 (123)
105 3nw4_A Gentisate 1,2-dioxygena 88.4 3.1 0.00011 25.8 7.8 72 4-85 284-355 (368)
106 3kgz_A Cupin 2 conserved barre 88.3 1.9 6.4E-05 23.2 5.5 30 18-52 63-92 (156)
107 3qac_A 11S globulin SEED stora 88.0 3.8 0.00013 26.3 7.4 51 3-53 327-379 (465)
108 2e9q_A 11S globulin subunit be 87.7 3.1 0.00011 26.5 6.6 51 3-53 67-138 (459)
109 1v70_A Probable antibiotics sy 87.2 1.5 5.2E-05 20.9 7.8 45 3-52 32-77 (105)
110 1fxz_A Glycinin G1; proglycini 86.7 2.2 7.6E-05 27.3 5.5 51 3-53 52-124 (476)
111 3h7j_A Bacilysin biosynthesis 86.5 3.1 0.00011 23.8 7.5 45 4-53 150-195 (243)
112 2o1q_A Putative acetyl/propion 86.5 1.3 4.4E-05 23.4 3.9 50 3-55 48-97 (145)
113 2opk_A Hypothetical protein; p 86.0 1.1 3.9E-05 22.4 3.4 34 17-53 51-84 (112)
114 4e2q_A Ureidoglycine aminohydr 85.4 1.5 5.1E-05 25.9 4.1 67 4-79 75-141 (266)
115 3h7j_A Bacilysin biosynthesis 85.4 3.6 0.00012 23.5 7.2 43 4-51 39-81 (243)
116 3cew_A Uncharacterized cupin p 85.3 2.4 8.2E-05 21.4 5.7 44 4-52 31-76 (125)
117 2pyt_A Ethanolamine utilizatio 84.6 2.9 0.0001 21.8 7.2 43 4-53 62-104 (133)
118 1sfn_A Conserved hypothetical 84.4 4.2 0.00014 23.4 8.0 46 3-53 169-215 (246)
119 2phl_A Phaseolin; plant SEED s 84.3 4.8 0.00016 25.2 6.1 50 4-53 244-301 (397)
120 1sfn_A Conserved hypothetical 84.0 4.4 0.00015 23.3 7.9 63 4-78 55-117 (246)
121 1x82_A Glucose-6-phosphate iso 83.9 3.8 0.00013 22.6 6.9 34 19-52 96-129 (190)
122 2d40_A Z3393, putative gentisa 82.4 4 0.00014 25.0 5.2 47 3-53 104-150 (354)
123 1sq4_A GLXB, glyoxylate-induce 82.3 4.5 0.00015 23.8 5.2 46 2-52 194-240 (278)
124 1y9q_A Transcriptional regulat 82.1 4.5 0.00015 22.0 6.9 44 4-52 109-154 (192)
125 2q1z_B Anti-sigma factor CHRR, 81.5 2.5 8.6E-05 23.6 3.8 62 3-78 129-192 (195)
126 2d40_A Z3393, putative gentisa 81.5 7 0.00024 23.9 7.6 71 4-84 273-343 (354)
127 3myx_A Uncharacterized protein 81.2 4.2 0.00014 23.7 4.7 31 19-53 186-216 (238)
128 3bu7_A Gentisate 1,2-dioxygena 81.0 2 6.9E-05 26.8 3.5 47 3-53 127-173 (394)
129 2oa2_A BH2720 protein; 1017534 81.0 4.4 0.00015 21.2 7.3 49 4-52 48-98 (148)
130 1juh_A Quercetin 2,3-dioxygena 81.0 2.7 9.2E-05 25.6 4.1 64 8-80 261-325 (350)
131 2o8q_A Hypothetical protein; c 80.7 4.1 0.00014 20.7 4.8 31 19-53 64-94 (134)
132 1y3t_A Hypothetical protein YX 80.3 7.1 0.00024 23.2 7.0 45 4-53 51-96 (337)
133 2d5f_A Glycinin A3B4 subunit; 80.2 9.5 0.00033 24.6 7.2 34 3-36 49-82 (493)
134 1juh_A Quercetin 2,3-dioxygena 78.8 8.7 0.0003 23.4 5.9 35 19-53 71-105 (350)
135 3ksc_A LEGA class, prolegumin; 78.7 7.1 0.00024 25.2 5.5 52 3-54 50-122 (496)
136 2q30_A Uncharacterized protein 77.8 4.5 0.00015 19.5 7.7 65 4-77 38-104 (110)
137 3ht1_A REMF protein; cupin fol 77.0 4.8 0.00017 20.6 3.9 31 19-52 59-89 (145)
138 1rc6_A Hypothetical protein YL 76.9 8.5 0.00029 22.2 6.1 30 19-53 81-110 (261)
139 1sef_A Conserved hypothetical 75.3 9.8 0.00034 22.2 8.0 45 4-53 187-232 (274)
140 3c3v_A Arachin ARAH3 isoform; 74.8 10 0.00035 24.6 5.5 34 3-36 52-85 (510)
141 4axo_A EUTQ, ethanolamine util 74.1 8.3 0.00028 20.7 6.8 30 18-52 83-112 (151)
142 4i4a_A Similar to unknown prot 73.5 6.9 0.00024 19.6 7.0 44 5-53 40-83 (128)
143 3qac_A 11S globulin SEED stora 72.7 14 0.00049 23.7 5.7 33 4-36 55-87 (465)
144 3nw4_A Gentisate 1,2-dioxygena 72.7 8.1 0.00028 24.0 4.5 47 3-53 107-153 (368)
145 3d82_A Cupin 2, conserved barr 72.6 6.3 0.00021 18.7 5.4 51 19-79 50-100 (102)
146 1uij_A Beta subunit of beta co 71.7 16 0.00055 23.0 6.3 51 3-53 253-318 (416)
147 1vr3_A Acireductone dioxygenas 66.3 15 0.00051 20.6 5.4 35 19-53 104-138 (191)
148 2ea7_A 7S globulin-1; beta bar 65.1 23 0.0008 22.4 5.9 51 3-53 270-334 (434)
149 3o14_A Anti-ecfsigma factor, C 64.8 17 0.00059 20.7 6.7 60 3-77 150-210 (223)
150 3s7i_A Allergen ARA H 1, clone 64.3 24 0.00083 22.3 5.6 51 4-54 268-344 (418)
151 2hql_A Hypothetical protein Mg 63.8 11 0.00039 18.5 3.2 31 24-54 11-41 (110)
152 2cav_A Protein (canavalin); vi 61.7 28 0.00096 22.1 6.4 51 3-53 285-347 (445)
153 3lag_A Uncharacterized protein 59.7 3.5 0.00012 20.2 1.0 48 3-52 21-69 (98)
154 2qnk_A 3-hydroxyanthranilate 3 59.7 26 0.00089 21.1 8.3 69 3-82 211-279 (286)
155 1zrr_A E-2/E-2' protein; nicke 59.5 14 0.00046 20.5 3.4 33 20-53 101-133 (179)
156 2vec_A YHAK, pirin-like protei 50.3 36 0.0012 19.9 10.1 67 4-79 187-253 (256)
157 3cjx_A Protein of unknown func 49.8 13 0.00044 20.2 2.3 30 3-32 47-76 (165)
158 4h7l_A Uncharacterized protein 49.7 25 0.00087 19.1 3.4 31 18-53 65-97 (157)
159 2p17_A Pirin-like protein; GK1 47.8 41 0.0014 19.9 5.9 70 4-84 172-246 (277)
160 3ebr_A Uncharacterized RMLC-li 45.7 13 0.00044 20.0 1.9 44 3-53 46-89 (159)
161 2xlg_A SLL1785 protein, CUCA; 45.2 15 0.00053 21.2 2.2 34 19-52 64-112 (239)
162 2oyz_A UPF0345 protein VPA0057 37.9 39 0.0013 16.7 5.6 58 7-74 31-88 (94)
163 2pa7_A DTDP-6-deoxy-3,4-keto-h 37.4 47 0.0016 17.5 6.7 62 16-82 53-115 (141)
164 3bal_A Acetylacetone-cleaving 32.7 45 0.0015 18.0 2.7 30 3-32 50-79 (153)
165 1tq5_A Protein YHHW; bicupin, 31.7 77 0.0026 18.3 8.9 64 4-81 165-229 (242)
166 3kvp_A Uncharacterized protein 30.1 48 0.0016 15.4 4.1 24 19-42 29-53 (72)
167 3hqx_A UPF0345 protein aciad03 26.2 73 0.0025 16.3 6.1 60 7-74 45-104 (111)
168 2arc_A ARAC, arabinose operon 24.0 81 0.0028 16.0 4.5 30 18-52 37-66 (164)
169 2odd_A Protein CBFA2T1; MYND z 23.6 17 0.00058 16.2 0.0 14 4-17 2-15 (64)
170 1dgw_X Canavalin; duplicated s 23.3 70 0.0024 15.0 4.6 34 3-36 40-74 (79)
171 3f1z_A Putative nucleic acid-b 21.8 16 0.00053 18.2 -0.3 14 4-17 5-18 (133)
No 1
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.88 E-value=1.4e-21 Score=106.89 Aligned_cols=86 Identities=57% Similarity=0.960 Sum_probs=81.1
Q ss_pred CeeEEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEehhhhhcCCCceeEEEEecceeEEEEch
Q psy5057 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDR 80 (87)
Q Consensus 1 ~~~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (87)
++.+.|++|++|+++|++++++|+|++|.++++...+|++..+..+.+|++||+.+++.+.++..++.|.++|+++.+++
T Consensus 61 ~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~~G~~fGe~~~~~~~~~~~~v~A~~~~~~~~i~~ 140 (161)
T 3idb_B 61 MFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMYNTPRAATITATSPGALWGLDR 140 (161)
T ss_dssp CEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEETTEEEEEEEEESCCEECGGGGTCCCCCSSEEEESSSEEEEEEEH
T ss_pred cceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEcCCCCeEEEEEcCCCCEechHHHHcCCCcccEEEECCCeEEEEEeH
Confidence 46789999999999999999999999999999995589999999999999999999999999999999999999999999
Q ss_pred hhhhcc
Q psy5057 81 KTFYCN 86 (87)
Q Consensus 81 ~~~~~~ 86 (87)
+.|.++
T Consensus 141 ~~~~~l 146 (161)
T 3idb_B 141 VTFRRI 146 (161)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999875
No 2
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.87 E-value=8.8e-22 Score=105.32 Aligned_cols=85 Identities=13% Similarity=0.155 Sum_probs=73.9
Q ss_pred eeEEecCCCEEEecCCCCCeEEEEEeceEEEEEee-CCCceE---EEEecCCCeEehhhhhcCCCceeEEEEecceeEEE
Q psy5057 2 FEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEI-DGEDKL---MHAYEDKGSFGELALLYNMPRAATIKATSTGSLWA 77 (87)
Q Consensus 2 ~~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~-~~~~~~---~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~ 77 (87)
+.+.|++|++|+++|++.+.+|+|++|.++++... +|++.. +..+.+|++||+.+++.+.++..+++|.++|+++.
T Consensus 30 ~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~fG~~~~~~~~~~~~~~~a~~~~~~~~ 109 (142)
T 3mdp_A 30 EEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIFGVSSLIKPYHYTSSARATKPVRVVD 109 (142)
T ss_dssp EEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEECGGGSSTTCBCSSEEEESSCEEEEE
T ss_pred cEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEechHHHcCCCCceEEEEECCcEEEEE
Confidence 57889999999999999999999999999999776 777777 99999999999999999999999999999999999
Q ss_pred Echhhhhcc
Q psy5057 78 MDRKTFYCN 86 (87)
Q Consensus 78 ~~~~~~~~~ 86 (87)
+|++.|.++
T Consensus 110 i~~~~~~~l 118 (142)
T 3mdp_A 110 INGARLREM 118 (142)
T ss_dssp EEHHHHHHH
T ss_pred EeHHHHHHH
Confidence 999999865
No 3
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.86 E-value=2.5e-21 Score=104.18 Aligned_cols=86 Identities=28% Similarity=0.404 Sum_probs=80.4
Q ss_pred CeeEEecCCCEEEecCCCCCeEEEEEeceEEEEEee-CCCceEEEEecCCCeEehhhhhcCCCceeEEEEecceeEEEEc
Q psy5057 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEI-DGEDKLMHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMD 79 (87)
Q Consensus 1 ~~~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~ 79 (87)
++.+.|++|++|+++|++++.+|+|++|.++++... +|++..+..+.+|++||+.+++.+.++..+++|.++|+++.+|
T Consensus 28 ~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~a~~~~~~~~i~ 107 (149)
T 2pqq_A 28 MSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGELSLFDPGPRTATGTALTEVKLLALG 107 (149)
T ss_dssp CEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEESGGGGTSCEECSSEEEESSCEEEEEEE
T ss_pred ceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEechHHhcCCCCcceEEEEccceEEEEEe
Confidence 357899999999999999999999999999999877 7889999999999999999999988889999999999999999
Q ss_pred hhhhhcc
Q psy5057 80 RKTFYCN 86 (87)
Q Consensus 80 ~~~~~~~ 86 (87)
++.|.++
T Consensus 108 ~~~~~~l 114 (149)
T 2pqq_A 108 HGDLQPW 114 (149)
T ss_dssp GGGHHHH
T ss_pred HHHHHHH
Confidence 9999765
No 4
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.86 E-value=5e-21 Score=107.19 Aligned_cols=85 Identities=12% Similarity=0.077 Sum_probs=79.4
Q ss_pred eeEEecCCCEEEecCCCCCeEEEEEeceEEEEEee-CCCceEEEEecCCCeEehh-hhhcCCCceeEEEEecceeEEEEc
Q psy5057 2 FEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEI-DGEDKLMHAYEDKGSFGEL-ALLYNMPRAATIKATSTGSLWAMD 79 (87)
Q Consensus 2 ~~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~-~~~~~~~~~~~~g~~~g~~-~~~~~~~~~~~~~a~~~~~~~~~~ 79 (87)
+.+.|++|++|+++|++++++|+|++|.++++..+ +|++.++..+.||++||+. +++.+.++..+++|.++|+++.+|
T Consensus 31 ~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~~ge~~~~~~~~~~~~~~~a~~~~~v~~i~ 110 (194)
T 3dn7_A 31 QLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLSDYMAFQKQQPADFYIQSVENCELLSIT 110 (194)
T ss_dssp EEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEECCHHHHHHTCBCSSEEEESSCEEEEEEE
T ss_pred EEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEEEEEccCCcEEeehHHHhcCCCCceEEEEECCEEEEEEe
Confidence 57899999999999999999999999999999886 8899999999999999987 778888999999999999999999
Q ss_pred hhhhhcc
Q psy5057 80 RKTFYCN 86 (87)
Q Consensus 80 ~~~~~~~ 86 (87)
++.|.++
T Consensus 111 ~~~~~~l 117 (194)
T 3dn7_A 111 YTEQENL 117 (194)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999875
No 5
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.86 E-value=6.9e-21 Score=106.60 Aligned_cols=86 Identities=20% Similarity=0.329 Sum_probs=80.9
Q ss_pred CeeEEecCCCEEEecCCCCCeEEEEEeceEEEEEee-CCCceEEEEecCCCeEehhhhhcCCCceeEEEEecceeEEEEc
Q psy5057 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEI-DGEDKLMHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMD 79 (87)
Q Consensus 1 ~~~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~ 79 (87)
++.+.|++|++|+++|++++.+|+|++|.++++... +|++..+..+.+|++||+.+++.+.++..+++|.++|+++.+|
T Consensus 62 ~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~~l~~~~~~~~v~A~~~~~v~~i~ 141 (187)
T 3gyd_A 62 MQCYAAPRDCQLLTEGDPGDYLLLILTGEVNVIKDIPNKGIQTIAKVGAGAIIGEMSMIDGMPRSASCVASLPTDFAVLS 141 (187)
T ss_dssp CEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEEETTTEEEEEEEEETTCEESHHHHHHCCCCSSEEEEEEEEEEEEEE
T ss_pred cEEEEeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCeEEEEEccCCCeeeeHHHhCCCCeeEEEEECCCeEEEEEc
Confidence 357899999999999999999999999999999887 7888999999999999999999999999999999999999999
Q ss_pred hhhhhcc
Q psy5057 80 RKTFYCN 86 (87)
Q Consensus 80 ~~~~~~~ 86 (87)
++.|.++
T Consensus 142 ~~~~~~l 148 (187)
T 3gyd_A 142 RDALYQL 148 (187)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999865
No 6
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.86 E-value=1.7e-20 Score=107.18 Aligned_cols=86 Identities=24% Similarity=0.417 Sum_probs=81.0
Q ss_pred eeEEecCCCEEEecCCCCCeEEEEEeceEEEEEee-CCCceEEEEecCCCeEehhhhhcCCCceeEEEEecceeEEEEch
Q psy5057 2 FEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEI-DGEDKLMHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDR 80 (87)
Q Consensus 2 ~~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (87)
+.+.|++|++|+.+|++++.+|+|++|.++++... +|++..+..+.+|++||+.+++.+.++..++.|.++|+++.+|+
T Consensus 30 ~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~~~~~~~~~~A~~~~~v~~i~~ 109 (227)
T 3d0s_A 30 QPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDR 109 (227)
T ss_dssp CEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCHHHHSCSCCSSEEEESSCEEEEEEEH
T ss_pred eEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEEecCCCEEeeHHHcCCCCceeEEEEcccEEEEEEeH
Confidence 57899999999999999999999999999999887 78899999999999999999999999999999999999999999
Q ss_pred hhhhccC
Q psy5057 81 KTFYCNL 87 (87)
Q Consensus 81 ~~~~~~~ 87 (87)
+.|.+++
T Consensus 110 ~~~~~l~ 116 (227)
T 3d0s_A 110 DALRSWI 116 (227)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 9998763
No 7
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.85 E-value=4.6e-21 Score=103.72 Aligned_cols=86 Identities=22% Similarity=0.408 Sum_probs=75.8
Q ss_pred CeeEEecCCCEEEecCCCCCeEEEEEeceEEEEEee-CCCceEEEEecCCCeEehhhhhcCCC-ceeEEEEecceeEEEE
Q psy5057 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEI-DGEDKLMHAYEDKGSFGELALLYNMP-RAATIKATSTGSLWAM 78 (87)
Q Consensus 1 ~~~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~~~-~~~~~~a~~~~~~~~~ 78 (87)
++.+.|++|++|+++|++.+.+|+|++|.++++... +|++..+..+.+|++||+.+++.+.+ +..+++|.++|+++.+
T Consensus 35 ~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~~~~~~~~~~~a~~~~~~~~i 114 (154)
T 2z69_A 35 SDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEAMMFMDTPNYVATAQAVVPSQLFRF 114 (154)
T ss_dssp CEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----CCEEECTTEEESGGGGGSSCSBCSSEEEESSSEEEEEE
T ss_pred CcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEEEEEccCCCeeccHhhccCCCCCceEEEEccceEEEEE
Confidence 357899999999999999999999999999999776 78888999999999999999999988 8999999999999999
Q ss_pred chhhhhcc
Q psy5057 79 DRKTFYCN 86 (87)
Q Consensus 79 ~~~~~~~~ 86 (87)
|++.|.++
T Consensus 115 ~~~~~~~l 122 (154)
T 2z69_A 115 SNKAYLRQ 122 (154)
T ss_dssp EHHHHHHH
T ss_pred CHHHHHHH
Confidence 99999765
No 8
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.85 E-value=1.6e-20 Score=106.45 Aligned_cols=86 Identities=23% Similarity=0.349 Sum_probs=80.9
Q ss_pred CeeEEecCCCEEEecCCCCCeEEEEEeceEEEEEee-CCCceEEEEecCCCeEehhhhhcCCCceeEEEEecceeEEEEc
Q psy5057 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEI-DGEDKLMHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMD 79 (87)
Q Consensus 1 ~~~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~ 79 (87)
++.+.|++|++|+++|++++++|+|.+|.++++... +|++..+..+.+|++||+.+++.+.++..++.|.++|+++.+|
T Consensus 22 ~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~a~~~~~v~~i~ 101 (216)
T 4ev0_A 22 FQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLLDEGERSASAVAVEDTELLALF 101 (216)
T ss_dssp CEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEEEEEECTTCEECHHHHHHCCBCSSEEEESSSEEEEEEE
T ss_pred heEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEeehhhcCCCCcceEEEEcCCEEEEEEc
Confidence 357899999999999999999999999999999886 8889999999999999999999999999999999999999999
Q ss_pred hhhhhcc
Q psy5057 80 RKTFYCN 86 (87)
Q Consensus 80 ~~~~~~~ 86 (87)
++.|.++
T Consensus 102 ~~~~~~l 108 (216)
T 4ev0_A 102 REDYLAL 108 (216)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999765
No 9
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.85 E-value=3.5e-20 Score=100.73 Aligned_cols=83 Identities=46% Similarity=0.804 Sum_probs=76.7
Q ss_pred CeeEEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEehhhhhcCCCceeEEEEecceeEEEEch
Q psy5057 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDR 80 (87)
Q Consensus 1 ~~~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (87)
++.+.|++|++|+.+|++++++|+|++|.++++. ....+..+.+|++||+.+++.+.++..++.|.++|+++.+++
T Consensus 61 ~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~----~~~~~~~~~~G~~fGe~~~~~~~~~~~~v~A~~~~~~~~i~~ 136 (154)
T 3pna_A 61 MFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV----NNEWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDR 136 (154)
T ss_dssp CEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE----TTEEEEEECTTCEECCHHHHHCCCCSSEEEESSCEEEEEEEH
T ss_pred ceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE----CCEEEEEecCCCEeeehHhhcCCCcceEEEECcceEEEEEeH
Confidence 4578999999999999999999999999999997 445788999999999999999999999999999999999999
Q ss_pred hhhhccC
Q psy5057 81 KTFYCNL 87 (87)
Q Consensus 81 ~~~~~~~ 87 (87)
+.|.+++
T Consensus 137 ~~~~~ll 143 (154)
T 3pna_A 137 DSYRRIL 143 (154)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 9998764
No 10
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.85 E-value=2.4e-20 Score=99.74 Aligned_cols=82 Identities=35% Similarity=0.604 Sum_probs=75.7
Q ss_pred CeeEEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEehhhhhcCCCceeEEEEecceeEEEEch
Q psy5057 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDR 80 (87)
Q Consensus 1 ~~~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (87)
++.+.|++|++|+++|+..+.+|+|++|.+++.. ....+..+.+|++||+.+++.+.++..+++|.++|+++.+++
T Consensus 46 ~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~----~g~~~~~~~~G~~fGe~~~l~~~~~~~~~~a~~~~~v~~i~~ 121 (139)
T 3ocp_A 46 MYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK----EGVKLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDR 121 (139)
T ss_dssp CEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE----TTEEEEEECTTCEESCHHHHHCCCCSSEEEESSCEEEEEEEH
T ss_pred cEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE----CCEEEEEeCCCCEeccHHHHCCCCcceEEEECcceEEEEEcH
Confidence 4678999999999999999999999999999966 335889999999999999999999999999999999999999
Q ss_pred hhhhcc
Q psy5057 81 KTFYCN 86 (87)
Q Consensus 81 ~~~~~~ 86 (87)
+.|.++
T Consensus 122 ~~~~~l 127 (139)
T 3ocp_A 122 QCFQTI 127 (139)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999875
No 11
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.85 E-value=2.4e-20 Score=105.36 Aligned_cols=86 Identities=19% Similarity=0.288 Sum_probs=80.1
Q ss_pred CeeEEecCCCEEEecCCCCCeEEEEEeceEEEEEee-CCCceEEEEecCCCeEehhhhhcCC-CceeEEEEecceeEEEE
Q psy5057 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEI-DGEDKLMHAYEDKGSFGELALLYNM-PRAATIKATSTGSLWAM 78 (87)
Q Consensus 1 ~~~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~~-~~~~~~~a~~~~~~~~~ 78 (87)
++.+.|++|+.|+++|++++++|+|++|.++++... +|++.++..+.+|++||+.+++.+. ++..++.|.++|+++.+
T Consensus 19 ~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~a~~~~~v~~i 98 (210)
T 3ryp_A 19 CHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEI 98 (210)
T ss_dssp SEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTCBCSSEEEESSCEEEEEE
T ss_pred cEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHHhcCCCCceEEEEECCcEEEEEE
Confidence 357899999999999999999999999999999886 8899999999999999999998887 78899999999999999
Q ss_pred chhhhhcc
Q psy5057 79 DRKTFYCN 86 (87)
Q Consensus 79 ~~~~~~~~ 86 (87)
|++.|.++
T Consensus 99 ~~~~~~~l 106 (210)
T 3ryp_A 99 SYKKFRQL 106 (210)
T ss_dssp EHHHHHHH
T ss_pred cHHHHHHH
Confidence 99999765
No 12
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.85 E-value=2.1e-20 Score=105.41 Aligned_cols=86 Identities=21% Similarity=0.287 Sum_probs=78.3
Q ss_pred CeeEEecCCCEEEecCCCCCeEEEEEeceEEEEEee-CCCceEEEEecCCCeEehhhhhcCC----CceeEEEEecceeE
Q psy5057 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEI-DGEDKLMHAYEDKGSFGELALLYNM----PRAATIKATSTGSL 75 (87)
Q Consensus 1 ~~~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~~----~~~~~~~a~~~~~~ 75 (87)
++.+.|++|++|+.+|++++.+|+|++|.++++... +|++..+..+.+|++||+.+++.+. ++..++.|.++|++
T Consensus 13 ~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~~~~A~~~~~v 92 (207)
T 2oz6_A 13 CHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQERSAWVRAKVECEV 92 (207)
T ss_dssp SEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC-----CBCCSEEEESSCEEE
T ss_pred cceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCCcccHHHhcCCCCCCCcceEEEECCcEEE
Confidence 357899999999999999999999999999999876 7899999999999999999999888 78899999999999
Q ss_pred EEEchhhhhcc
Q psy5057 76 WAMDRKTFYCN 86 (87)
Q Consensus 76 ~~~~~~~~~~~ 86 (87)
+.+|++.|.++
T Consensus 93 ~~i~~~~~~~l 103 (207)
T 2oz6_A 93 AEISYAKFREL 103 (207)
T ss_dssp EEEEHHHHHHH
T ss_pred EEECHHHHHHH
Confidence 99999999765
No 13
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.84 E-value=3.2e-20 Score=106.60 Aligned_cols=86 Identities=16% Similarity=0.251 Sum_probs=80.7
Q ss_pred CeeEEecCCCEEEecCCCCCeEEEEEeceEEEEEee-CCCceEEEEecCCCeEehhhhhcCCCceeEEEEecceeEEEEc
Q psy5057 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEI-DGEDKLMHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMD 79 (87)
Q Consensus 1 ~~~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~ 79 (87)
++.+.|++|++|+.+|++++++|+|++|.++++... +|++.++..+++|++||+.+++.+.++..++.|.++|+++.+|
T Consensus 34 ~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~~~~~~~~~~~a~~~~~v~~i~ 113 (237)
T 3fx3_A 34 AVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGESFGEAVALRNTPYPVSAEAVTPCEVMHIP 113 (237)
T ss_dssp CEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEEEEEEETTEEECHHHHHHTCCCSSEEEESSSEEEEEEE
T ss_pred CEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEeCCCCEechHHHhcCCCCCceEEECCceEEEEEc
Confidence 357899999999999999999999999999999876 8889999999999999999999999999999999999999999
Q ss_pred hhhhhcc
Q psy5057 80 RKTFYCN 86 (87)
Q Consensus 80 ~~~~~~~ 86 (87)
++.|.++
T Consensus 114 ~~~~~~l 120 (237)
T 3fx3_A 114 SPVFVSL 120 (237)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999765
No 14
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.84 E-value=4.1e-20 Score=106.13 Aligned_cols=86 Identities=12% Similarity=0.101 Sum_probs=80.3
Q ss_pred eeEEecCCCEEEecCCCCCeEEEEEeceEEEEEee-CCCceEEEEecCCCeEehhhhhcCCC-ceeEEEEecceeEEEEc
Q psy5057 2 FEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEI-DGEDKLMHAYEDKGSFGELALLYNMP-RAATIKATSTGSLWAMD 79 (87)
Q Consensus 2 ~~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~~~-~~~~~~a~~~~~~~~~~ 79 (87)
+.+.|++|++|+.+|++++.+|+|++|.++++... +|++..+..+.+|++||+.+++.+.+ +..++.|.++|+++.+|
T Consensus 44 ~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l~~~~~G~~fG~~~~~~~~~~~~~~~~A~~~~~v~~i~ 123 (232)
T 1zyb_A 44 HFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYLIEPQSLFGMNTNYASSYVAHTEVHTVCIS 123 (232)
T ss_dssp EEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSEEECGGGGSSSCCBCSSEEEESSCEEEEEEE
T ss_pred EEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEEEEEccCCCeeeehHHhCCCCCCceEEEEccceEEEEEE
Confidence 57899999999999999999999999999999876 88999999999999999999998888 88999999999999999
Q ss_pred hhhhhccC
Q psy5057 80 RKTFYCNL 87 (87)
Q Consensus 80 ~~~~~~~~ 87 (87)
++.|.+++
T Consensus 124 ~~~~~~l~ 131 (232)
T 1zyb_A 124 KAFVLSDL 131 (232)
T ss_dssp HHHHHHTG
T ss_pred HHHHHHHh
Confidence 99998753
No 15
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.84 E-value=3.4e-20 Score=106.21 Aligned_cols=86 Identities=14% Similarity=0.137 Sum_probs=77.4
Q ss_pred CeeEEecCCCEEEecCCCCCeEEEEEeceEEEEEee-CCCceEEEEecCCCeEehhhhhcCCCceeEEEEecceeEEEEc
Q psy5057 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEI-DGEDKLMHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMD 79 (87)
Q Consensus 1 ~~~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~ 79 (87)
++.+.|++|++|+++|++.+.+|+|++|.++++... +|++..+..+.+|++||+.+++.+.++..++.|.++|+++.+|
T Consensus 33 ~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~~~~~~~~~~A~~~~~v~~i~ 112 (232)
T 2gau_A 33 IQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYFAEETCSSTAIAVENSKVLAIP 112 (232)
T ss_dssp CEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHHHHTSCCSSEEEESSCEEEEEEE
T ss_pred CeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEeCCCCEeeeehhhCCCCcceEEEEecceEEEEEE
Confidence 357899999999999999999999999999999876 7899999999999999999999998999999999999999999
Q ss_pred hhhhhcc
Q psy5057 80 RKTFYCN 86 (87)
Q Consensus 80 ~~~~~~~ 86 (87)
++.|.++
T Consensus 113 ~~~~~~l 119 (232)
T 2gau_A 113 VEAIEAL 119 (232)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999765
No 16
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.84 E-value=6.4e-20 Score=104.80 Aligned_cols=86 Identities=16% Similarity=0.237 Sum_probs=79.3
Q ss_pred CeeEEecCCCEEEecCCCCCeEEEEEeceEEEEEee-CCCceEEEEecCCCeEehhhhhcCC-CceeEEEEecceeEEEE
Q psy5057 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEI-DGEDKLMHAYEDKGSFGELALLYNM-PRAATIKATSTGSLWAM 78 (87)
Q Consensus 1 ~~~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~~-~~~~~~~a~~~~~~~~~ 78 (87)
++.+.|++|++|+.+|++++++|+|++|.++++... +|++.++..+.+|++||+.+++.+. ++..++.|.++|+++.+
T Consensus 34 ~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~a~~~~~v~~i 113 (230)
T 3iwz_A 34 SHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVGEMGLFIESDTREVILRTRTQCELAEI 113 (230)
T ss_dssp SEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCGGGTSCCSBCCSEEEESSCEEEEEE
T ss_pred CeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEEehhhhcCCCCceeEEEEcCcEEEEEE
Confidence 357899999999999999999999999999999877 8899999999999999999988875 67899999999999999
Q ss_pred chhhhhcc
Q psy5057 79 DRKTFYCN 86 (87)
Q Consensus 79 ~~~~~~~~ 86 (87)
|++.|.++
T Consensus 114 ~~~~~~~l 121 (230)
T 3iwz_A 114 SYERLQQL 121 (230)
T ss_dssp EHHHHHHH
T ss_pred eHHHHHHH
Confidence 99999765
No 17
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.83 E-value=4.6e-20 Score=104.80 Aligned_cols=86 Identities=10% Similarity=0.079 Sum_probs=79.5
Q ss_pred CeeEEecCCCEEEecCCCCCeEEEEEeceEEEEEee-CCCceEEEEecCCCeEehhhhhcCC-CceeEEEEecceeEEEE
Q psy5057 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEI-DGEDKLMHAYEDKGSFGELALLYNM-PRAATIKATSTGSLWAM 78 (87)
Q Consensus 1 ~~~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~~-~~~~~~~a~~~~~~~~~ 78 (87)
++.+.|++|+.|+.+|++++++|+|++|.++++... +|++..+..+.+|++||+.+++.+. ++..++.|.++|+++.+
T Consensus 22 ~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~~~~~~~~~~~~A~~~~~v~~i 101 (213)
T 1o5l_A 22 GKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFSSEPRFPVNVVAGENSKILSI 101 (213)
T ss_dssp SEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTTSSSCBCSSEEEESSSEEEEEE
T ss_pred cEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEecCCCEeeeHHHhcCCCCceEEEEEccceEEEEE
Confidence 357899999999999999999999999999999876 8889999999999999999988876 78899999999999999
Q ss_pred chhhhhcc
Q psy5057 79 DRKTFYCN 86 (87)
Q Consensus 79 ~~~~~~~~ 86 (87)
|++.|.++
T Consensus 102 ~~~~~~~l 109 (213)
T 1o5l_A 102 PKEVFLDL 109 (213)
T ss_dssp EHHHHHHH
T ss_pred eHHHHHHH
Confidence 99999765
No 18
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.83 E-value=6.2e-20 Score=107.05 Aligned_cols=86 Identities=19% Similarity=0.288 Sum_probs=80.2
Q ss_pred CeeEEecCCCEEEecCCCCCeEEEEEeceEEEEEee-CCCceEEEEecCCCeEehhhhhcCC-CceeEEEEecceeEEEE
Q psy5057 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEI-DGEDKLMHAYEDKGSFGELALLYNM-PRAATIKATSTGSLWAM 78 (87)
Q Consensus 1 ~~~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~~-~~~~~~~a~~~~~~~~~ 78 (87)
++.+.|++|++|+.+|++++.+|+|++|.++++... +|++.++..+.+|++||+.+++.+. ++..+++|.++|+++.+
T Consensus 69 ~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~~~G~~~Ge~~~~~~~~~~~~~~~A~~~~~l~~i 148 (260)
T 3kcc_A 69 CHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEI 148 (260)
T ss_dssp SEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTCBCCSEEEESSCEEEEEE
T ss_pred CEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehHHhCCCCCCceEEEECCCeEEEEE
Confidence 357899999999999999999999999999999886 8889999999999999999999888 78899999999999999
Q ss_pred chhhhhcc
Q psy5057 79 DRKTFYCN 86 (87)
Q Consensus 79 ~~~~~~~~ 86 (87)
|++.|.++
T Consensus 149 ~~~~~~~l 156 (260)
T 3kcc_A 149 SYKKFRQL 156 (260)
T ss_dssp EHHHHHHH
T ss_pred cHHHHHHH
Confidence 99999765
No 19
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.83 E-value=2.2e-20 Score=106.93 Aligned_cols=85 Identities=20% Similarity=0.350 Sum_probs=78.8
Q ss_pred eeEEecCCCEEEecCCCCCeEEEEEeceEEEEEee-CCCceEEEEecCCCeEehhhhhcCCCceeEEEEecceeEEEEch
Q psy5057 2 FEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEI-DGEDKLMHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDR 80 (87)
Q Consensus 2 ~~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (87)
+.+.|++|++|+.+|++++++|+|++|.++++... +|++.++..+.+|++||+.+++.+.++..++.|.++|+++.+|+
T Consensus 30 ~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~a~~~~~v~~i~~ 109 (231)
T 3e97_A 30 TERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVGETAVLAHQERSASVRALTPVRTLMLHR 109 (231)
T ss_dssp EEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEEEEEEESSEEESTTTTTCCCCCCEEEEESSCEEEEEECH
T ss_pred EEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEEEEecCCCCEEeeHHHhCCCCceEEEEECCcEEEEEEeH
Confidence 57889999999999999999999999999999886 88899999999999999999999999999999999999999999
Q ss_pred hhhhcc
Q psy5057 81 KTFYCN 86 (87)
Q Consensus 81 ~~~~~~ 86 (87)
+.|.++
T Consensus 110 ~~~~~l 115 (231)
T 3e97_A 110 EHFELI 115 (231)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999765
No 20
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.83 E-value=9.7e-20 Score=99.07 Aligned_cols=82 Identities=17% Similarity=0.271 Sum_probs=76.2
Q ss_pred CeeEEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEehhhhhcC--CCceeEEEEecceeEEEE
Q psy5057 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYN--MPRAATIKATSTGSLWAM 78 (87)
Q Consensus 1 ~~~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~--~~~~~~~~a~~~~~~~~~ 78 (87)
++.+.|++|++|+++|++++.+|+|++|.++++. ++..+..+.+|++||+.+++.+ .++..+++|.++|+++.+
T Consensus 50 ~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~----~~~~~~~~~~G~~fG~~~~~~~~~~~~~~~~~a~~~~~v~~i 125 (160)
T 4f8a_A 50 FQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQ----DDEVVAILGKGDVFGDVFWKEATLAQSCANVRALTYCDLHVI 125 (160)
T ss_dssp CEEEEECTTCEEECTTSBCCEEEEEEESEEEEEE----TTEEEEEEETTCEEECCTTTCSSCCBCSSEEEESSCEEEEEE
T ss_pred ceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEE----CCEEEEEecCCCEeCcHHHhcCcccceEEEEEECCceEEEEE
Confidence 3578999999999999999999999999999988 6789999999999999999988 688899999999999999
Q ss_pred chhhhhcc
Q psy5057 79 DRKTFYCN 86 (87)
Q Consensus 79 ~~~~~~~~ 86 (87)
|++.|.++
T Consensus 126 ~~~~~~~l 133 (160)
T 4f8a_A 126 KRDALQKV 133 (160)
T ss_dssp EHHHHHHH
T ss_pred cHHHHHHH
Confidence 99999875
No 21
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.83 E-value=1.3e-19 Score=104.74 Aligned_cols=85 Identities=18% Similarity=0.179 Sum_probs=78.7
Q ss_pred eeEEecCCCEEEecCCCCCeEEEEEeceEEEEEee-CCCceEEEEecCCCeEehhhhhcCCCc--eeEEEEecceeEEEE
Q psy5057 2 FEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEI-DGEDKLMHAYEDKGSFGELALLYNMPR--AATIKATSTGSLWAM 78 (87)
Q Consensus 2 ~~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~~~~--~~~~~a~~~~~~~~~ 78 (87)
+.+.|++|++|+.+|++++.+|+|++|.++++... +|++.++..+.+|++||+.+++.+.+. ..++.|.++|+++.+
T Consensus 44 ~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~l~~~~~g~~~G~~~~~~~~~~~~~~~~~A~~~~~v~~i 123 (243)
T 3la7_A 44 VVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSLLTGNKSDRFYHAVAFTPVELLSA 123 (243)
T ss_dssp EEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEEEEEECTTCEESCHHHHSSCCSBCCEEEEESSSEEEEEE
T ss_pred eeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEcchHHhCCCCCcceEEEEEccceEEEEE
Confidence 47899999999999999999999999999999876 889999999999999999999988874 489999999999999
Q ss_pred chhhhhcc
Q psy5057 79 DRKTFYCN 86 (87)
Q Consensus 79 ~~~~~~~~ 86 (87)
|++.|.++
T Consensus 124 ~~~~~~~l 131 (243)
T 3la7_A 124 PIEQVEQA 131 (243)
T ss_dssp EHHHHHHH
T ss_pred cHHHHHHH
Confidence 99999765
No 22
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.83 E-value=1e-19 Score=102.07 Aligned_cols=80 Identities=16% Similarity=0.223 Sum_probs=75.6
Q ss_pred EEecCCCEEEecCCCCCeEEEEEeceEEEEEee-CCCceEEEEecCCCeEehhhhhcCCCceeEEEEecceeEEEEchhh
Q psy5057 4 KPVEAGDIVIRQGDDGDFFYVIESGRYEASVEI-DGEDKLMHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKT 82 (87)
Q Consensus 4 ~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 82 (87)
+.|++|++|+++|++.+.+|+|++|.++++... +|++..+..+.+|++||+ +++.+.++..++.|.++|+++.+|++.
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~Ge-~~~~~~~~~~~~~A~~~~~v~~i~~~~ 80 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGE-EALEGKAYRYTAEAMTEAVVQGLEPRA 80 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEEEEEECTTCEECG-GGGTCSBCSSEEEESSSEEEEEECGGG
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEecCCCEech-hhhCCCCceeEEEECCcEEEEEEcHHH
Confidence 689999999999999999999999999999876 788899999999999999 999999999999999999999999988
Q ss_pred hh
Q psy5057 83 FY 84 (87)
Q Consensus 83 ~~ 84 (87)
|.
T Consensus 81 ~~ 82 (195)
T 3b02_A 81 MD 82 (195)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 23
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.83 E-value=9.3e-20 Score=103.53 Aligned_cols=86 Identities=15% Similarity=0.268 Sum_probs=80.1
Q ss_pred CeeEEecCCCEEEecCCCCCeEEEEEeceEEEEEee-CCCceEEEEecCCCe--EehhhhhcCCCceeEEEEecceeEEE
Q psy5057 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEI-DGEDKLMHAYEDKGS--FGELALLYNMPRAATIKATSTGSLWA 77 (87)
Q Consensus 1 ~~~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~-~~~~~~~~~~~~g~~--~g~~~~~~~~~~~~~~~a~~~~~~~~ 77 (87)
++.+.|++|++|+++|++++++|+|.+|.++++... +|++..+..+.||++ ||+.+++.+.++..++.|.++|+++.
T Consensus 26 ~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~a~~~~~~~~ 105 (220)
T 3dv8_A 26 LITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLSASCIMRSIQFEVTIEAEKDTDLWI 105 (220)
T ss_dssp CEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESGGGGGGCTTCCCCCEEEESSCEEEEE
T ss_pred CceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEEEEecCCCCeeehhHHHHhCCCCCceEEEEeeeeEEEE
Confidence 357899999999999999999999999999999876 788999999999999 68899999999999999999999999
Q ss_pred Echhhhhcc
Q psy5057 78 MDRKTFYCN 86 (87)
Q Consensus 78 ~~~~~~~~~ 86 (87)
+|++.|.++
T Consensus 106 i~~~~~~~l 114 (220)
T 3dv8_A 106 IPAEIYKGI 114 (220)
T ss_dssp EEHHHHHHH
T ss_pred EEHHHHHHH
Confidence 999999765
No 24
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.83 E-value=7.7e-20 Score=102.88 Aligned_cols=83 Identities=25% Similarity=0.414 Sum_probs=76.2
Q ss_pred CeeEEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEehhhhhcCCCceeEEEEecceeEEEEch
Q psy5057 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDR 80 (87)
Q Consensus 1 ~~~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (87)
++.+.|++|++|+++|++.+.+|+|.+|.++++. .+|+ .+..+++|++||+.+++.+.++..+++|.++|+++.+++
T Consensus 94 ~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~-~~g~--~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~i~~ 170 (198)
T 2ptm_A 94 LEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM-SDGV--IATSLSDGSYFGEICLLTRERRVASVKCETYCTLFSLSV 170 (198)
T ss_dssp CEEEEECTTCEEECTTSCCSEEEEEEECCEEEEC-TTSC--EEEEECTTCEESCHHHHHSSCCSSEEEESSCEEEEEEEH
T ss_pred ccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEe-cCCe--EEEEecCCCEechHHHcCCCccceEEEEeeEEEEEEEeH
Confidence 4678999999999999999999999999999986 3444 789999999999999999999999999999999999999
Q ss_pred hhhhcc
Q psy5057 81 KTFYCN 86 (87)
Q Consensus 81 ~~~~~~ 86 (87)
++|.++
T Consensus 171 ~~f~~l 176 (198)
T 2ptm_A 171 QHFNQV 176 (198)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999865
No 25
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.82 E-value=2.1e-19 Score=110.87 Aligned_cols=86 Identities=56% Similarity=0.952 Sum_probs=81.3
Q ss_pred CeeEEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEehhhhhcCCCceeEEEEecceeEEEEch
Q psy5057 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDR 80 (87)
Q Consensus 1 ~~~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (87)
|+.+.|++|++|+++|+..+.+|+|++|.++++...+|++..+..+.+|++||+.+++.+.++.++++|.++|++|.+++
T Consensus 168 ~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~~~G~~~~v~~l~~G~~fGe~all~~~pr~atv~A~~d~~l~~i~r 247 (416)
T 3tnp_B 168 MFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMYNTPKAATITATSPGALWGLDR 247 (416)
T ss_dssp CEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEECSSCEEEEEEEESCCEECGGGGTSCCCCSSEEEESSSEEEEEEEH
T ss_pred cEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEecCCCEEEEEEecCCCEEeeHHHhcCCCcccEEEEccCeEEEEEee
Confidence 46789999999999999999999999999999986688899999999999999999999999999999999999999999
Q ss_pred hhhhcc
Q psy5057 81 KTFYCN 86 (87)
Q Consensus 81 ~~~~~~ 86 (87)
+.|.++
T Consensus 248 ~~f~~l 253 (416)
T 3tnp_B 248 VTFRRI 253 (416)
T ss_dssp HHHHHH
T ss_pred hhhhhh
Confidence 999875
No 26
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.82 E-value=1.9e-19 Score=107.82 Aligned_cols=85 Identities=29% Similarity=0.380 Sum_probs=78.9
Q ss_pred CeeEEecCCCEEEecCCCCCeEEEEEeceEEEEEee-CCCceEEEEecCCCeEehhhhhcCCCceeEEEEecceeEEEEc
Q psy5057 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEI-DGEDKLMHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMD 79 (87)
Q Consensus 1 ~~~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~ 79 (87)
++.+.|++|++|+++|++.+.+|+|++|.++++... +|++ .+..+.+|++||+.+++.+.++..+++|.++|+++.++
T Consensus 36 ~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~-~~~~~~~G~~fGe~~l~~~~~~~~~v~A~~~~~~~~i~ 114 (333)
T 4ava_A 36 VQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVA-IIARALPGMIVGEIALLRDSPRSATVTTIEPLTGWTGG 114 (333)
T ss_dssp CEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCE-EEEEECTTCEESHHHHHHTCBCSSEEEESSCEEEEEEC
T ss_pred CeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcE-EEEEecCCCEeeHHHhcCCCCceEEEEEecCEEEEEEc
Confidence 467899999999999999999999999999999887 5554 89999999999999999999999999999999999999
Q ss_pred hhhhhcc
Q psy5057 80 RKTFYCN 86 (87)
Q Consensus 80 ~~~~~~~ 86 (87)
++.|.++
T Consensus 115 ~~~~~~l 121 (333)
T 4ava_A 115 RGAFATM 121 (333)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999875
No 27
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.81 E-value=1.7e-19 Score=106.63 Aligned_cols=86 Identities=28% Similarity=0.422 Sum_probs=80.7
Q ss_pred CeeEEecCCCEEEecCCCCCeEEEEEeceEEEEEee--CCCceEEEEecCCCeEehhhhhcCCCceeEEEEecceeEEEE
Q psy5057 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEI--DGEDKLMHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAM 78 (87)
Q Consensus 1 ~~~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~--~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~ 78 (87)
++.+.|++|++|+++|++++.+|+|++|.++++... +|++..+..+++|++||+.+++.+.++.++++|.++|+++.+
T Consensus 180 ~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~i 259 (299)
T 3shr_A 180 LEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDWFGEKALQGEDVRTANVIAAEAVTCLVI 259 (299)
T ss_dssp CEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEEEEEEETTCEECGGGGSSSEECSSEEEESSSEEEEEE
T ss_pred ccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceEEEEcCCCCEeChHHHhCCCCcceEEEECCCEEEEEE
Confidence 357889999999999999999999999999999876 788899999999999999999999999999999999999999
Q ss_pred chhhhhcc
Q psy5057 79 DRKTFYCN 86 (87)
Q Consensus 79 ~~~~~~~~ 86 (87)
+++.|.++
T Consensus 260 ~~~~f~~l 267 (299)
T 3shr_A 260 DRDSFKHL 267 (299)
T ss_dssp EHHHHHHH
T ss_pred eHHHHHHH
Confidence 99999875
No 28
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.81 E-value=2e-19 Score=102.05 Aligned_cols=82 Identities=21% Similarity=0.229 Sum_probs=75.7
Q ss_pred CeeEEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEehhhhhcCC--CceeEEEEecceeEEEE
Q psy5057 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYNM--PRAATIKATSTGSLWAM 78 (87)
Q Consensus 1 ~~~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~--~~~~~~~a~~~~~~~~~ 78 (87)
++.+.|++|++|+++|++.+.+|+|.+|.++++. ....+..+++|++||+.+++.+. ++.++++|.++|+++.+
T Consensus 98 ~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~----~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~v~a~~~~~l~~i 173 (212)
T 3ukn_A 98 IKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLK----DNTVLAILGKGDLIGSDSLTKEQVIKTNANVKALTYCDLQYI 173 (212)
T ss_dssp CEEEEECTTCEEECTTSBCCEEEEEEECCEEEES----SSCEEEEECTTCEEECSCCSSSSCCBBCSEEEESSCEEEEEE
T ss_pred hheEEeCCCCEEEECCCcccEEEEEEecEEEEEE----CCeEEEEecCCCCcCcHHhccCCCCCcceEEEEcccEEEEEE
Confidence 4678999999999999999999999999999986 34788999999999999999988 88899999999999999
Q ss_pred chhhhhcc
Q psy5057 79 DRKTFYCN 86 (87)
Q Consensus 79 ~~~~~~~~ 86 (87)
++++|.++
T Consensus 174 ~~~~f~~l 181 (212)
T 3ukn_A 174 SLKGLREV 181 (212)
T ss_dssp EHHHHHHH
T ss_pred eHHHHHHH
Confidence 99999865
No 29
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.81 E-value=2e-20 Score=99.72 Aligned_cols=86 Identities=17% Similarity=0.188 Sum_probs=73.9
Q ss_pred CeeEEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEE--EecCCCeEehhhh---hcCCC------ceeEEEE
Q psy5057 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMH--AYEDKGSFGELAL---LYNMP------RAATIKA 69 (87)
Q Consensus 1 ~~~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~--~~~~g~~~g~~~~---~~~~~------~~~~~~a 69 (87)
++.+.|++|++|+++|++.+.+|+|++|.+++....+|++..+. .+.+|++||+.++ +.+.+ +..+++|
T Consensus 29 ~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~~~~~~~A 108 (137)
T 1wgp_A 29 LKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKA 108 (137)
T ss_dssp CBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTHHHHHHHCSSCCSSSCBCSSEEEE
T ss_pred heEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEcCCCcceeeeeeeecCCCEecHHHHHHHhccccccccccceeEEEE
Confidence 35678999999999999999999999999995533477776666 9999999999985 77664 4689999
Q ss_pred ecceeEEEEchhhhhcc
Q psy5057 70 TSTGSLWAMDRKTFYCN 86 (87)
Q Consensus 70 ~~~~~~~~~~~~~~~~~ 86 (87)
.++|+++.++++.|.++
T Consensus 109 ~~~~~~~~i~~~~~~~l 125 (137)
T 1wgp_A 109 LTEVEAFALIADELKFV 125 (137)
T ss_dssp SSCBEEEEEEHHHHHHH
T ss_pred eEEEEEEEECHHHHHHH
Confidence 99999999999999875
No 30
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.81 E-value=2.5e-20 Score=106.30 Aligned_cols=86 Identities=22% Similarity=0.408 Sum_probs=80.1
Q ss_pred CeeEEecCCCEEEecCCCCCeEEEEEeceEEEEEee-CCCceEEEEecCCCeEehhhhhcCCC-ceeEEEEecceeEEEE
Q psy5057 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEI-DGEDKLMHAYEDKGSFGELALLYNMP-RAATIKATSTGSLWAM 78 (87)
Q Consensus 1 ~~~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~~~-~~~~~~a~~~~~~~~~ 78 (87)
++.+.|++|++|+.+|++++++|+|++|.++++... +|++..+..+++|++||+.+++.+.+ +..++.|.++|+++.+
T Consensus 32 ~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~a~~~~~v~~i 111 (227)
T 3dkw_A 32 SDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEAMMFMDTPNYVATAQAVVPSQLFRF 111 (227)
T ss_dssp CEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBCCCEECTTEEESCTTTTTTCSBCSSCEEESSCCEEEEE
T ss_pred CEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHhcCCCCCCceEEEEcCcEEEEEE
Confidence 357899999999999999999999999999999876 78899999999999999999999988 8899999999999999
Q ss_pred chhhhhcc
Q psy5057 79 DRKTFYCN 86 (87)
Q Consensus 79 ~~~~~~~~ 86 (87)
|++.|.++
T Consensus 112 ~~~~~~~l 119 (227)
T 3dkw_A 112 SNKAYLRQ 119 (227)
T ss_dssp ESHHHHHH
T ss_pred eHHHHHHH
Confidence 99999865
No 31
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.81 E-value=7.8e-19 Score=103.35 Aligned_cols=86 Identities=29% Similarity=0.366 Sum_probs=78.7
Q ss_pred CeeEEecCCCEEEecCCCCCeEEEEEeceEEEEEee-CC-CceEEEEecCCCeEehhhhhcCCCceeEEEEecceeEEEE
Q psy5057 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEI-DG-EDKLMHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAM 78 (87)
Q Consensus 1 ~~~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~-~~-~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~ 78 (87)
++.+.|++|++|+++|++.+.+|+|++|.++++... +| +...+..+++|++||+.+++.+.++.++++|.++|+++.+
T Consensus 180 ~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i 259 (291)
T 2qcs_B 180 LEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIALLMNRPKAATVVARGPLKCVKL 259 (291)
T ss_dssp CEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEEEEEECTTCEECSGGGTCCCCCSSEEEEEEEEEEEEE
T ss_pred cEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEEEEEeCCCCEecHHHHcCCCCcceEEEECCcEEEEEE
Confidence 357889999999999999999999999999999765 44 4578999999999999999999999999999999999999
Q ss_pred chhhhhcc
Q psy5057 79 DRKTFYCN 86 (87)
Q Consensus 79 ~~~~~~~~ 86 (87)
+++.|.++
T Consensus 260 ~~~~f~~~ 267 (291)
T 2qcs_B 260 DRPRFERV 267 (291)
T ss_dssp EHHHHHHH
T ss_pred cHHHHHHH
Confidence 99999865
No 32
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.80 E-value=7.9e-19 Score=101.65 Aligned_cols=83 Identities=16% Similarity=0.185 Sum_probs=76.5
Q ss_pred CeeEEecCCCEEEecCCCCCeEEEEEeceEEEEEee-CCCceEEEEecCCCeEehhhhhcCCCceeEEEEecceeEEEEc
Q psy5057 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEI-DGEDKLMHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMD 79 (87)
Q Consensus 1 ~~~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~ 79 (87)
++.+.|++|++|+++|++++.+|+|.+|.++++... +|++.++..+.+|++||+ ++.+. +..++.|.++|+++.+|
T Consensus 32 ~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~--~l~~~-~~~~~~A~~~~~v~~i~ 108 (250)
T 3e6c_C 32 GLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGK--LYPTG-NNIYATAMEPTRTCWFS 108 (250)
T ss_dssp SEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEEEEEECTTCEECC--CSCCS-CCEEEEESSSEEEEEEC
T ss_pred CeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEee--ecCCC-CceEEEEcccEEEEEEc
Confidence 357899999999999999999999999999999886 889999999999999999 66667 88999999999999999
Q ss_pred hhhhhcc
Q psy5057 80 RKTFYCN 86 (87)
Q Consensus 80 ~~~~~~~ 86 (87)
++.|.++
T Consensus 109 ~~~~~~l 115 (250)
T 3e6c_C 109 EKSLRTV 115 (250)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999765
No 33
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.80 E-value=4.9e-19 Score=101.80 Aligned_cols=84 Identities=35% Similarity=0.593 Sum_probs=76.8
Q ss_pred CeeEEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEehhhhhcCCCceeEEEEecceeEEEEch
Q psy5057 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDR 80 (87)
Q Consensus 1 ~~~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (87)
++.+.|++|+.|+++|++++.+|+|.+|.++++...++ .+..+++|++||+.+++.+.++.++++|.++|+++.+++
T Consensus 148 ~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~---~~~~l~~g~~fGe~~~~~~~~~~~~v~a~~~~~~~~i~~ 224 (246)
T 3of1_A 148 LDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQG---VINKLKDHDYFGEVALLNDLPRQATVTATKRTKVATLGK 224 (246)
T ss_dssp CEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTE---EEEEEETTCEECHHHHHHTCBCSSEEEESSCEEEEEEEH
T ss_pred hheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCc---eEEEcCCCCcccHHHHhCCCCcccEEEECCCEEEEEEeH
Confidence 45788999999999999999999999999999875322 889999999999999999999999999999999999999
Q ss_pred hhhhccC
Q psy5057 81 KTFYCNL 87 (87)
Q Consensus 81 ~~~~~~~ 87 (87)
+.|.+++
T Consensus 225 ~~f~~ll 231 (246)
T 3of1_A 225 SGFQRLL 231 (246)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9998764
No 34
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.80 E-value=5.5e-19 Score=101.59 Aligned_cols=83 Identities=51% Similarity=0.784 Sum_probs=75.6
Q ss_pred CeeEEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEehhhhhcCCCceeEEEEecceeEEEEch
Q psy5057 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDR 80 (87)
Q Consensus 1 ~~~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (87)
++.+.|++|++|+++|++++++|+|++|.++++. ....+..+.+|++||+.+++.+.++.+++.|.++|.++.+|+
T Consensus 30 ~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~----~~~~~~~~~~g~~fGe~~l~~~~~~~~tv~a~~~~~~~~i~~ 105 (246)
T 3of1_A 30 LEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYV----NDNKVNSSGPGSSFGELALMYNSPRAATVVATSDCLLWALDR 105 (246)
T ss_dssp CEEEEECTTCEEECTTCCCCEEEEEEECCEEEES----TTSCCEEECTTCEECHHHHHHTCCCSSEEEESSCEEEEEEEH
T ss_pred hceEEECCCCEEEecCCCCCEEEEEEeeEEEEEE----CCEEEEecCCCCeeehhHHhcCCCCCcEEEECCCeEEEEEEh
Confidence 4678999999999999999999999999999886 334468999999999999999999999999999999999999
Q ss_pred hhhhccC
Q psy5057 81 KTFYCNL 87 (87)
Q Consensus 81 ~~~~~~~ 87 (87)
+.|.+++
T Consensus 106 ~~~~~~~ 112 (246)
T 3of1_A 106 LTFRKIL 112 (246)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 9998764
No 35
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.80 E-value=9.3e-19 Score=103.48 Aligned_cols=82 Identities=35% Similarity=0.604 Sum_probs=76.0
Q ss_pred CeeEEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEehhhhhcCCCceeEEEEecceeEEEEch
Q psy5057 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDR 80 (87)
Q Consensus 1 ~~~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (87)
++.+.|++|++|+++|+.++.+|+|++|.+++.. ....+..+.+|++||+.+++.+.++.++++|.++|+++.+++
T Consensus 62 ~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~----~g~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~i~~ 137 (299)
T 3shr_A 62 MYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK----EGVKLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDR 137 (299)
T ss_dssp CEEEEECTTCEEECTTCBCCCEEEEEESCEEEEE----TTEEEEEECTTCEESCSGGGTTTBCCSEEEESSCEEEEEECH
T ss_pred cCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEE----CCEEEEEeCCCCeeeHhHHhcCCCCCcEEEEcCCeEEEEEcH
Confidence 4678999999999999999999999999999966 447889999999999999999999999999999999999999
Q ss_pred hhhhcc
Q psy5057 81 KTFYCN 86 (87)
Q Consensus 81 ~~~~~~ 86 (87)
+.|.++
T Consensus 138 ~~~~~i 143 (299)
T 3shr_A 138 QCFQTI 143 (299)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999765
No 36
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.79 E-value=3.7e-19 Score=94.82 Aligned_cols=80 Identities=28% Similarity=0.428 Sum_probs=72.8
Q ss_pred CeeEEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEehhhhhcCCCceeEEEEecceeEEEEch
Q psy5057 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDR 80 (87)
Q Consensus 1 ~~~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (87)
++.+.|++|++|+++|++.+.+|+|++|.++++... ...+.+|++||+.+++.+.++..+++|.++|+++.+|+
T Consensus 34 ~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~------~~~~~~G~~~G~~~~~~~~~~~~~~~a~~~~~~~~i~~ 107 (138)
T 1vp6_A 34 LRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN------PVELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHS 107 (138)
T ss_dssp CEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS------CEEECTTCEECHHHHHHCCCCSSCEEESSSEEEEEEEH
T ss_pred hcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC------cceECCCCEeeehHhccCCCceeEEEECCCEEEEEECH
Confidence 367899999999999999999999999999988642 25789999999999999999999999999999999999
Q ss_pred hhhhcc
Q psy5057 81 KTFYCN 86 (87)
Q Consensus 81 ~~~~~~ 86 (87)
+.|.++
T Consensus 108 ~~~~~l 113 (138)
T 1vp6_A 108 ADFQML 113 (138)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999765
No 37
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.79 E-value=6.2e-19 Score=99.49 Aligned_cols=82 Identities=24% Similarity=0.393 Sum_probs=73.3
Q ss_pred CeeEEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEehhhhhcCCCceeEEEEecceeEEEEch
Q psy5057 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDR 80 (87)
Q Consensus 1 ~~~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (87)
++.+.|++|++|+.+|++++.+|+|.+|.++++. .+|+.. .+++|++||+.+++.+.++.++++|.++|+++.+++
T Consensus 95 ~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~-~~g~~~---~l~~G~~fGe~~~~~~~~~~~~v~a~~~~~l~~i~~ 170 (202)
T 3bpz_A 95 LKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT-KGNKEM---KLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSV 170 (202)
T ss_dssp CEEEEECTTCEEECTTSBCCEEEEEEECEEEEEC-TTSCCE---EEETTCEECHHHHHHCSBCSSEEEESSCEEEEEEEH
T ss_pred CCceEECCCCEEEECCCcCCeEEEEeccEEEEEE-CCCeEE---EEcCCCEeccHHHhcCCCcccEEEEeeEEEEEEEEH
Confidence 4678999999999999999999999999999874 344443 589999999999999999999999999999999999
Q ss_pred hhhhcc
Q psy5057 81 KTFYCN 86 (87)
Q Consensus 81 ~~~~~~ 86 (87)
+.|.++
T Consensus 171 ~~f~~l 176 (202)
T 3bpz_A 171 DNFNEV 176 (202)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999865
No 38
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.78 E-value=2.2e-18 Score=99.21 Aligned_cols=84 Identities=7% Similarity=0.061 Sum_probs=75.4
Q ss_pred eeEEecCCCEEEecCCCCCeEEEEEeceEEEEEee-CCCceEEEEecCCCeEehhhhhcCCCc--eeEEEEe-cceeEEE
Q psy5057 2 FEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEI-DGEDKLMHAYEDKGSFGELALLYNMPR--AATIKAT-STGSLWA 77 (87)
Q Consensus 2 ~~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~~~~--~~~~~a~-~~~~~~~ 77 (87)
+.+.|++|++|+.+|++.+.+|+|++|.++++... +|++.++..+ +|++||+.+++.+.+. ..++.|. ++|+++.
T Consensus 19 ~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~-~G~~~Ge~~~~~~~~~~~~~~~~a~~~~~~v~~ 97 (238)
T 2bgc_A 19 KPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYY-KGAFVIMSGFIDTETSVGYYNLEVISEQATAYV 97 (238)
T ss_dssp CCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEEEEEE-ESSEEEESBCTTTCCBSCCCEEEECSSEEEEEE
T ss_pred eEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEEEEEc-CCCEecchhhhcCCCcCcceeEEEEEcceEEEE
Confidence 46889999999999999999999999999999876 7888999999 9999999999888764 6777888 5999999
Q ss_pred Echhhhhcc
Q psy5057 78 MDRKTFYCN 86 (87)
Q Consensus 78 ~~~~~~~~~ 86 (87)
+|++.|.++
T Consensus 98 i~~~~~~~l 106 (238)
T 2bgc_A 98 IKINELKEL 106 (238)
T ss_dssp EEHHHHHHH
T ss_pred EeHHHHHHH
Confidence 999999765
No 39
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.78 E-value=1.3e-18 Score=107.30 Aligned_cols=86 Identities=33% Similarity=0.397 Sum_probs=76.7
Q ss_pred CeeEEecCCCEEEecCCCCCeEEEEEeceEEEEEee-C------CCceEEEEecCCCeEehhhhhcCCCceeEEEEecce
Q psy5057 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEI-D------GEDKLMHAYEDKGSFGELALLYNMPRAATIKATSTG 73 (87)
Q Consensus 1 ~~~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~-~------~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~ 73 (87)
++.+.|++|++|+++|+.++++|+|.+|.++++... + |++..+..+++|++||+.+++.+.++.++++|.++|
T Consensus 290 l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~l~~l~~G~~fGE~all~~~~r~~tv~A~~~~ 369 (416)
T 3tnp_B 290 IGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFRGQYFGELALVTNKPRAASAHAIGTV 369 (416)
T ss_dssp CEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CEEEEECTTCEESGGGGTCCSCCSSEEEEEEEE
T ss_pred ceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeEEEEeCCCCEecHHHHhCCCCceeEEEEcCCe
Confidence 467899999999999999999999999999998765 3 778899999999999999999999999999999999
Q ss_pred eEEEEchhhhhcc
Q psy5057 74 SLWAMDRKTFYCN 86 (87)
Q Consensus 74 ~~~~~~~~~~~~~ 86 (87)
+++.|+++.|.++
T Consensus 370 ~ll~I~~~~f~~l 382 (416)
T 3tnp_B 370 KCLAMDVQAFERL 382 (416)
T ss_dssp EEEEEEHHHHHHH
T ss_pred EEEEEEHHHHHHH
Confidence 9999999999875
No 40
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.78 E-value=2.3e-19 Score=95.49 Aligned_cols=82 Identities=24% Similarity=0.313 Sum_probs=72.7
Q ss_pred eeEEec-CCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEehhhhhcCCCceeEE-EEecceeEEEEc
Q psy5057 2 FEKPVE-AGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYNMPRAATI-KATSTGSLWAMD 79 (87)
Q Consensus 2 ~~~~~~-~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~-~a~~~~~~~~~~ 79 (87)
+.+.++ +|++|+++|+..+.+|+|++|.++++. .+|+. ..+.+|++||+.+++.+.++..++ .|.++|+++.++
T Consensus 40 ~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-~~g~~---~~l~~G~~fG~~~~~~~~~~~~~~~~a~~~~~~~~i~ 115 (134)
T 2d93_A 40 IFEVVEQAGAIILEDGQELDSWYVILNGTVEISH-PDGKV---ENLFMGNSFGITPTLDKQYMHGIVRTKVDDCQFVCIA 115 (134)
T ss_dssp EEEEECSSSCEEECTTCEECEEEECCBSCEEEEC-SSSCE---EEECTTCEESCCSSSCCEECCSEEEESSSSEEEEEEE
T ss_pred eEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEc-CCCcE---EEecCCCccChhHhcCCCcceeEEEEEecceEEEEEe
Confidence 567889 999999999999999999999999885 34444 568999999999999988888888 999999999999
Q ss_pred hhhhhccC
Q psy5057 80 RKTFYCNL 87 (87)
Q Consensus 80 ~~~~~~~~ 87 (87)
++.|.+++
T Consensus 116 ~~~~~~l~ 123 (134)
T 2d93_A 116 QQDYWRIL 123 (134)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHHH
Confidence 99998764
No 41
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.78 E-value=4.2e-18 Score=96.90 Aligned_cols=78 Identities=15% Similarity=0.229 Sum_probs=71.6
Q ss_pred eeEEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEehhhhhcCCCceeEEEEecceeEEEEchh
Q psy5057 2 FEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRK 81 (87)
Q Consensus 2 ~~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 81 (87)
+.+.|++|++|+.+|++++.+|+|.+|.++++...+|++..+..+.+|++||+ ++..++.|.++|+++.+|++
T Consensus 28 ~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~~G~-------~~~~~~~A~~~~~v~~i~~~ 100 (220)
T 2fmy_A 28 REQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYEDKEFTLAILEAGDIFCT-------HTRAFIQAMEDTTILYTDIR 100 (220)
T ss_dssp EEEEECTTCEEECTTCSSCEEEEEEESEEEEEEECSSCEEEEEEEETTCEEES-------CSSSEEEESSSEEEEEEEHH
T ss_pred heeEeCCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEeCC-------ccceEEEEcCcEEEEEEeHH
Confidence 57899999999999999999999999999996444899999999999999998 77889999999999999999
Q ss_pred hhhcc
Q psy5057 82 TFYCN 86 (87)
Q Consensus 82 ~~~~~ 86 (87)
.|.++
T Consensus 101 ~~~~l 105 (220)
T 2fmy_A 101 NFQNI 105 (220)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99765
No 42
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.77 E-value=2.2e-18 Score=97.03 Aligned_cols=80 Identities=21% Similarity=0.267 Sum_probs=74.5
Q ss_pred eeEEecCCCEEEecCCCC--CeEEEEEeceEEEEEee-CCCceEEEEecCCCeEehhhhhcCCCceeEEEEecceeEEEE
Q psy5057 2 FEKPVEAGDIVIRQGDDG--DFFYVIESGRYEASVEI-DGEDKLMHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAM 78 (87)
Q Consensus 2 ~~~~~~~g~~l~~~g~~~--~~~~~i~~G~v~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~ 78 (87)
+.+.|++|++|+.+|+++ +.+|+|++|.++++... +|++..+..+.||++||+ +++.+.++..++.|.++|+++.+
T Consensus 6 ~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~-~~l~~~~~~~~~~A~~~~~v~~i 84 (202)
T 2zcw_A 6 ETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGE-EALFGQERIYFAEAATDVRLEPL 84 (202)
T ss_dssp CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEEEEEECTTCEECT-HHHHTCCBCSEEEESSCEEEEEC
T ss_pred eEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCCEeee-hhcCCCCcceEEEEcccEEEEEE
Confidence 568899999999999999 99999999999999876 888999999999999999 88888999999999999999999
Q ss_pred chhhh
Q psy5057 79 DRKTF 83 (87)
Q Consensus 79 ~~~~~ 83 (87)
++.|
T Consensus 85 -~~~~ 88 (202)
T 2zcw_A 85 -PENP 88 (202)
T ss_dssp -CSSC
T ss_pred -hHhc
Confidence 7665
No 43
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.77 E-value=5.2e-18 Score=99.82 Aligned_cols=82 Identities=45% Similarity=0.798 Sum_probs=75.9
Q ss_pred CeeEEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEehhhhhcCCCceeEEEEecceeEEEEch
Q psy5057 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDR 80 (87)
Q Consensus 1 ~~~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (87)
++.+.|++|++|+++|+..+.+|+|++|.++++. ....+..+.+|++||+.+++.+.++..++.|.++|+++.+++
T Consensus 62 ~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~----~g~~~~~l~~G~~fGe~~l~~~~~~~~tv~a~~~~~~~~i~~ 137 (291)
T 2qcs_B 62 MFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV----NNEWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDR 137 (291)
T ss_dssp CEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE----TTEEEEEECTTCEECGGGGTCCCBCSSEEEESSCEEEEEEEH
T ss_pred ccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE----CCeEEEEcCCCCccchHHHhcCCCCceEEEECCCEEEEEEEh
Confidence 4678899999999999999999999999999988 336789999999999999999999999999999999999999
Q ss_pred hhhhcc
Q psy5057 81 KTFYCN 86 (87)
Q Consensus 81 ~~~~~~ 86 (87)
+.|.++
T Consensus 138 ~~~~~~ 143 (291)
T 2qcs_B 138 DSYRRI 143 (291)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999765
No 44
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.77 E-value=9e-18 Score=95.70 Aligned_cols=79 Identities=18% Similarity=0.197 Sum_probs=71.9
Q ss_pred CeeEEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEehhhhhcCCCceeEEEEecceeEEEEch
Q psy5057 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDR 80 (87)
Q Consensus 1 ~~~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (87)
++.+.|++|++|+.+|++.+++|+|++|.++++...+|++..+..+.+|++|| .++..++.|.++|+++.+|+
T Consensus 23 ~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~fG-------~~~~~~~~A~~~~~v~~i~~ 95 (222)
T 1ft9_A 23 FRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREISLFYLTSGDMFC-------MHSGCLVEATERTEVRFADI 95 (222)
T ss_dssp CEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEEEEEEETTCEEE-------SCSSCEEEESSCEEEEEECH
T ss_pred CcEEEECCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEec-------CCCCEEEEEccceEEEEEeH
Confidence 35789999999999999999999999999999733488999999999999999 57789999999999999999
Q ss_pred hhhhcc
Q psy5057 81 KTFYCN 86 (87)
Q Consensus 81 ~~~~~~ 86 (87)
+.|.++
T Consensus 96 ~~~~~l 101 (222)
T 1ft9_A 96 RTFEQK 101 (222)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999765
No 45
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.77 E-value=8.8e-19 Score=107.04 Aligned_cols=85 Identities=32% Similarity=0.388 Sum_probs=78.0
Q ss_pred eeEEecCCCEEEecCCCCCeEEEEEeceEEEEEee-CC-CceEEEEecCCCeEehhhhhcCCCceeEEEEecceeEEEEc
Q psy5057 2 FEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEI-DG-EDKLMHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMD 79 (87)
Q Consensus 2 ~~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~-~~-~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~ 79 (87)
+.+.|++|++|+++|+.++.+|+|.+|.++++... +| +...+..+++|++||+.+++.+.++.++++|.++|+++.|+
T Consensus 272 ~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~Gd~fGe~all~~~~r~~tv~A~~~~~ll~i~ 351 (381)
T 4din_B 272 EPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDYFGEIALLLNRPRAATVVARGPLKCVKLD 351 (381)
T ss_dssp BCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCEEEEECTTCEECTTGGGSCCBCSSEEEESSCBEEEEEE
T ss_pred hhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCCCCEechHHHhCCCCceeEEEEcCCEEEEEEe
Confidence 46789999999999999999999999999999875 33 36779999999999999999999999999999999999999
Q ss_pred hhhhhcc
Q psy5057 80 RKTFYCN 86 (87)
Q Consensus 80 ~~~~~~~ 86 (87)
++.|.++
T Consensus 352 ~~~f~~l 358 (381)
T 4din_B 352 RPRFERV 358 (381)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999875
No 46
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.76 E-value=8.4e-18 Score=104.43 Aligned_cols=85 Identities=26% Similarity=0.385 Sum_probs=78.0
Q ss_pred CeeEEecCCCEEEecCCCCCeEEEEEeceEEEEEee-CCC--ceEEEEecCCCeEehhhhhcCCCceeEEEEecceeEEE
Q psy5057 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEI-DGE--DKLMHAYEDKGSFGELALLYNMPRAATIKATSTGSLWA 77 (87)
Q Consensus 1 ~~~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~-~~~--~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~ 77 (87)
++.+.|++|++|+++|++.+.+|+|++|.++++... +|+ +..+..+.+|++||+.+ +.+.++.++++|.++|+++.
T Consensus 65 ~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~~~~~~~~~~~G~~fGe~~-l~~~~~~~tv~A~~~~~l~~ 143 (469)
T 1o7f_A 65 GYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGESI-LDNTPRHATIVTRESSELLR 143 (469)
T ss_dssp CEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGGGCEEEEEECTTCEECGGG-GGTCBCSSEEEESSSEEEEE
T ss_pred ceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCCcceEEEEccCCCCcchhh-hCCCCccceEEEccceeEEE
Confidence 457899999999999999999999999999999876 554 48899999999999999 98999999999999999999
Q ss_pred Echhhhhcc
Q psy5057 78 MDRKTFYCN 86 (87)
Q Consensus 78 ~~~~~~~~~ 86 (87)
++++.|.++
T Consensus 144 i~~~~~~~l 152 (469)
T 1o7f_A 144 IEQEDFKAL 152 (469)
T ss_dssp EEHHHHHHH
T ss_pred EcHHHHHHH
Confidence 999999765
No 47
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.75 E-value=2.5e-18 Score=105.06 Aligned_cols=82 Identities=43% Similarity=0.765 Sum_probs=76.4
Q ss_pred CeeEEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEehhhhhcCCCceeEEEEecceeEEEEch
Q psy5057 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDR 80 (87)
Q Consensus 1 ~~~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (87)
++.+.|++|++|+++|+.++++|+|++|.++++. ....+..+.+|++||+.+++.+.++.++++|.++|++|.+++
T Consensus 153 ~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~----~~~~v~~l~~G~~fGe~all~~~~r~atv~A~~~~~l~~i~~ 228 (381)
T 4din_B 153 MFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV----NGEWVTNISEGGSFGELALIYGTPRAATVKAKTDLKLWGIDR 228 (381)
T ss_dssp CEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE----TTEEEEEEESSCCBCGGGGTSCCBCSSEEEESSSCEEEEEEH
T ss_pred ceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE----CCeEeeeCCCCCEEEchHHhcCCCcceEEEECCCEEEEEEch
Confidence 4678999999999999999999999999999997 445788899999999999999999999999999999999999
Q ss_pred hhhhcc
Q psy5057 81 KTFYCN 86 (87)
Q Consensus 81 ~~~~~~ 86 (87)
+.|.++
T Consensus 229 ~~f~~l 234 (381)
T 4din_B 229 DSYRRI 234 (381)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999875
No 48
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.72 E-value=6.6e-17 Score=100.42 Aligned_cols=80 Identities=24% Similarity=0.476 Sum_probs=73.5
Q ss_pred EEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEehhhhhcCCCceeEEEEec-ceeEEEEchhh
Q psy5057 4 KPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYNMPRAATIKATS-TGSLWAMDRKT 82 (87)
Q Consensus 4 ~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~-~~~~~~~~~~~ 82 (87)
+.|++|++|+++|+..+.+|+|++|.++++.. ....+..+.+|++||+.+++.+.++.++++|.+ +|+++.++++.
T Consensus 364 ~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~---~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~~i~~~~ 440 (469)
T 1o7f_A 364 SHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY---GKGVVCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKED 440 (469)
T ss_dssp EECSTTCEEECTTSCCCEEEEEEESEEEEEET---TTEEEEEEETTCEECGGGGTCCSCCSSEEEESSSSEEEEEEEHHH
T ss_pred eEecCCCEEEeCCCcCCeEEEEEEeEEEEEEc---CCeeEEEecCCCEEEEehhhcCCCceEEEEEecCCEEEEEEcHHH
Confidence 48999999999999999999999999999873 224889999999999999999999999999998 69999999999
Q ss_pred hhcc
Q psy5057 83 FYCN 86 (87)
Q Consensus 83 ~~~~ 86 (87)
|.++
T Consensus 441 f~~l 444 (469)
T 1o7f_A 441 FNRI 444 (469)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9875
No 49
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.72 E-value=9.8e-17 Score=107.06 Aligned_cols=85 Identities=26% Similarity=0.415 Sum_probs=77.7
Q ss_pred CeeEEecCCCEEEecCCCCCeEEEEEeceEEEEEee---CCCceEEEEecCCCeEehhhhhcCCCceeEEEEecceeEEE
Q psy5057 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEI---DGEDKLMHAYEDKGSFGELALLYNMPRAATIKATSTGSLWA 77 (87)
Q Consensus 1 ~~~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~---~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~ 77 (87)
|....+++|++|+++|+..+.+|+|++|.+.++... ++....+..+.+|+.||+ +++.+.++.++++|.++|++|.
T Consensus 65 m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~~~~~~~~v~~l~~G~sFGE-all~n~pRtaTv~a~~~s~l~~ 143 (999)
T 4f7z_A 65 GYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGE-SILDNTPRHATIVTRESSELLR 143 (999)
T ss_dssp CEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSSCTTSCEEEEEEETTCEECG-GGGGTCCCSSEEEESSSEEEEE
T ss_pred eEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCCCCCCceeEEEecCCcchhh-hhccCCCcceEEEeccceEEEE
Confidence 567899999999999999999999999999998764 455678899999999999 8899999999999999999999
Q ss_pred Echhhhhcc
Q psy5057 78 MDRKTFYCN 86 (87)
Q Consensus 78 ~~~~~~~~~ 86 (87)
+++++|..+
T Consensus 144 l~r~~F~~i 152 (999)
T 4f7z_A 144 IEQEDFKAL 152 (999)
T ss_dssp EEHHHHHHH
T ss_pred EEHHHHHHH
Confidence 999999764
No 50
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.71 E-value=7.1e-17 Score=107.74 Aligned_cols=81 Identities=23% Similarity=0.435 Sum_probs=73.6
Q ss_pred EEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEehhhhhcCCCceeEEEEecc-eeEEEEchhh
Q psy5057 4 KPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYNMPRAATIKATST-GSLWAMDRKT 82 (87)
Q Consensus 4 ~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~-~~~~~~~~~~ 82 (87)
..+++|++|+++|+..+.+|+|++|.+.++.. ....+..+++|++||+.+++.+.|+.++++|.++ |+++++++++
T Consensus 364 ~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~~---~~~~v~~L~~Gd~FGElALL~~~PR~aTV~a~~d~c~fl~i~k~d 440 (999)
T 4f7z_A 364 SHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY---GKGVVCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKED 440 (999)
T ss_dssp EESSTTCEEECTTSBCCEEEEEEESEEEEEET---TTEEEEEEETTCEECGGGGTCSCBCSSEEEESSSSEEEEEEEHHH
T ss_pred eeccCCCEEEeCCCcCCeEEEEEeeEEEEEEc---CCcceEEecCCCcccchhhccCCCeeEEEEEecCceEEEEeeHHH
Confidence 45689999999999999999999999999873 4567889999999999999999999999999885 9999999999
Q ss_pred hhccC
Q psy5057 83 FYCNL 87 (87)
Q Consensus 83 ~~~~~ 87 (87)
|.+++
T Consensus 441 f~~il 445 (999)
T 4f7z_A 441 GNRIL 445 (999)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98763
No 51
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.67 E-value=7.3e-16 Score=100.10 Aligned_cols=82 Identities=27% Similarity=0.528 Sum_probs=75.0
Q ss_pred eEEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEehhhhhcCCCceeEEEEec-ceeEEEEchh
Q psy5057 3 EKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYNMPRAATIKATS-TGSLWAMDRK 81 (87)
Q Consensus 3 ~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~-~~~~~~~~~~ 81 (87)
.+.|++|++|+++|++++.+|+|++|.++++.. |+ .++..+.+|++||+.+++.+.++..+++|.+ +|+++.++++
T Consensus 58 ~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~--g~-~il~~l~~Gd~fGe~al~~~~~~~~tv~A~edd~~ll~I~~~ 134 (694)
T 3cf6_E 58 ESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY--GK-GVVCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKE 134 (694)
T ss_dssp EEECSTTCEEECTTSBCCEEEEEEESEEEEEET--TT-EEEEEEETTCEECHHHHHHTCBCSSEEEECSSSEEEEEEEHH
T ss_pred EEEECCCCEEECCCCcCCeEEEEEEEEEEEEEe--CC-EEEEEeCCCCEeehHHHhCCCCceEEEEEeeCceEEEEEeHH
Confidence 468999999999999999999999999999874 33 6889999999999999999999999999999 5999999999
Q ss_pred hhhccC
Q psy5057 82 TFYCNL 87 (87)
Q Consensus 82 ~~~~~~ 87 (87)
.|.+++
T Consensus 135 ~f~~ll 140 (694)
T 3cf6_E 135 DFNRIL 140 (694)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 998764
No 52
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.59 E-value=9.3e-17 Score=97.25 Aligned_cols=80 Identities=28% Similarity=0.410 Sum_probs=0.0
Q ss_pred eeEEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEehhhhhcCCCceeEEEEecceeEEEEchh
Q psy5057 2 FEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRK 81 (87)
Q Consensus 2 ~~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 81 (87)
+.+.+++|+.|+++|++.+++|+|.+|.++++... ...+++|++||+.+++.+.++..+++|.++|+++.+|++
T Consensus 252 ~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~------~~~l~~G~~fGe~~~l~~~~~~~~~~A~~~~~l~~i~~~ 325 (355)
T 3beh_A 252 RARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN------PVELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSA 325 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEECCCCEEEeCCCcCceEEEEEeeEEEEEECC------eeEECCCCEEeehHHhCCCCcceEEEECccEEEEEEeHH
Confidence 56789999999999999999999999999998752 358999999999999999999999999999999999999
Q ss_pred hhhccC
Q psy5057 82 TFYCNL 87 (87)
Q Consensus 82 ~~~~~~ 87 (87)
+|.+++
T Consensus 326 ~f~~ll 331 (355)
T 3beh_A 326 DFQMLC 331 (355)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 998753
No 53
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=96.02 E-value=0.088 Score=30.02 Aligned_cols=66 Identities=14% Similarity=0.112 Sum_probs=48.4
Q ss_pred eEEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEehhhhhcCCCceeEEEEecceeEEEE
Q psy5057 3 EKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAM 78 (87)
Q Consensus 3 ~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~ 78 (87)
...+++|+.+-...-+.+.+.+|++|.+++.. ... ...+.+|+++=. ..+. ...+.|.+++.++.+
T Consensus 41 ~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i----~~~-~~~l~~Gd~~~~---p~~~--~H~~~a~~~~~~l~i 106 (227)
T 3rns_A 41 LFSLAKDEEITAEAMLGNRYYYCFNGNGEIFI----ENN-KKTISNGDFLEI---TANH--NYSIEARDNLKLIEI 106 (227)
T ss_dssp EEEECTTCEEEECSCSSCEEEEEEESEEEEEE----SSC-EEEEETTEEEEE---CSSC--CEEEEESSSEEEEEE
T ss_pred EEEECCCCccCccccCCCEEEEEEeCEEEEEE----CCE-EEEECCCCEEEE---CCCC--CEEEEECCCcEEEEE
Confidence 45679999998888889999999999999876 222 267889986532 1222 345678888888766
No 54
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=94.90 E-value=0.16 Score=25.73 Aligned_cols=64 Identities=16% Similarity=0.056 Sum_probs=42.7
Q ss_pred eEEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEehhhhhcCCCceeEEEEecceeEE
Q psy5057 3 EKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYNMPRAATIKATSTGSLW 76 (87)
Q Consensus 3 ~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~ 76 (87)
...+++|..+-.---+...++++++|.+.+.. ... ...+.+|+.+=.. .+.+ ..+.+.+++.++
T Consensus 40 ~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i----~~~-~~~l~~Gd~i~ip---~~~~--H~~~~~~~~~~~ 103 (114)
T 3fjs_A 40 RMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGV----DGA-QRRLHQGDLLYLG---AGAA--HDVNAITNTSLL 103 (114)
T ss_dssp EEEECTTCEEEEECCSSCEEEEEEESCEEEEE----TTE-EEEECTTEEEEEC---TTCC--EEEEESSSEEEE
T ss_pred EEEECCCCccCceeCCCcEEEEEEECEEEEEE----CCE-EEEECCCCEEEEC---CCCc--EEEEeCCCcEEE
Confidence 45678888877665566799999999998776 332 4778999966322 2233 345666776543
No 55
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=94.66 E-value=0.093 Score=28.98 Aligned_cols=45 Identities=11% Similarity=0.117 Sum_probs=27.8
Q ss_pred EEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeE
Q psy5057 4 KPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSF 52 (87)
Q Consensus 4 ~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~ 52 (87)
..+++|...-.-......+.+|++|.+.+.. .......+++||.+
T Consensus 84 v~l~PG~~~~~H~H~~eE~~~VLeGel~l~l----d~ge~~~L~~GDsi 128 (172)
T 3es1_A 84 VDMLPGKESPMHRTNSIDYGIVLEGEIELEL----DDGAKRTVRQGGII 128 (172)
T ss_dssp EEECTTCBCCCBCCSEEEEEEEEESCEEEEC----GGGCEEEECTTCEE
T ss_pred EEECCCCCCCCeecCceEEEEEEeCEEEEEE----CCCeEEEECCCCEE
Confidence 4556665332222233467899999998765 21124678999987
No 56
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=94.44 E-value=0.13 Score=28.23 Aligned_cols=50 Identities=8% Similarity=0.115 Sum_probs=35.1
Q ss_pred eEEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEe
Q psy5057 3 EKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFG 53 (87)
Q Consensus 3 ~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g 53 (87)
...+++|..........+.+++|++|.+++.....+. .....+.+||++=
T Consensus 45 ~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~-~~~~~l~~GDv~~ 94 (178)
T 1dgw_A 45 EYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDG-RDTYKLDQGDAIK 94 (178)
T ss_dssp EEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTE-EEEEEEETTEEEE
T ss_pred EEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCC-cEEEEECCCCEEE
Confidence 3466778766554445689999999999887754332 3356899999663
No 57
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=94.37 E-value=0.21 Score=24.93 Aligned_cols=63 Identities=16% Similarity=0.131 Sum_probs=37.7
Q ss_pred ecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEehhhhhcCCCceeEEEEecceeEEEE
Q psy5057 6 VEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAM 78 (87)
Q Consensus 6 ~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~ 78 (87)
+++|..+-....+...+++|++|.+.+.. .. ....+.+|+++=. -.+.++. +.+.+++.++.+
T Consensus 45 ~~~g~~~~~H~h~~~e~~~vl~G~~~~~i----~~-~~~~l~~Gd~i~i---~~~~~H~--~~~~~~~~~~~i 107 (114)
T 2ozj_A 45 FADGESVSEEEYFGDTLYLILQGEAVITF----DD-QKIDLVPEDVLMV---PAHKIHA--IAGKGRFKMLQI 107 (114)
T ss_dssp EETTSSCCCBCCSSCEEEEEEEEEEEEEE----TT-EEEEECTTCEEEE---CTTCCBE--EEEEEEEEEEEE
T ss_pred ECCCCccccEECCCCeEEEEEeCEEEEEE----CC-EEEEecCCCEEEE---CCCCcEE--EEeCCCcEEEEE
Confidence 45565543333456789999999998766 33 2467899996632 2334443 334456655543
No 58
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=93.76 E-value=0.32 Score=24.68 Aligned_cols=46 Identities=13% Similarity=0.132 Sum_probs=29.3
Q ss_pred eEEecCCCEEEecCCC-CCeEEEEEeceEEEEEeeCCCceEEEEecCCCeE
Q psy5057 3 EKPVEAGDIVIRQGDD-GDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSF 52 (87)
Q Consensus 3 ~~~~~~g~~l~~~g~~-~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~ 52 (87)
...+++|..+-..--. ...+++|++|.+.+... ++ ....+.+|+++
T Consensus 43 ~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~-~~---~~~~l~~Gd~~ 89 (125)
T 3h8u_A 43 VWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQG-NG---IVTHLKAGDIA 89 (125)
T ss_dssp EEEECTTCEECCC-CTTCEEEEEEEECEEEEECS-TT---CEEEEETTEEE
T ss_pred EEEECCCCcCCcccCCCCeEEEEEEEeEEEEEEC-CC---eEEEeCCCCEE
Confidence 3456777766544334 36788899999876531 22 24677899865
No 59
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=93.63 E-value=0.4 Score=25.38 Aligned_cols=47 Identities=11% Similarity=0.092 Sum_probs=30.2
Q ss_pred eEEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEe
Q psy5057 3 EKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFG 53 (87)
Q Consensus 3 ~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g 53 (87)
...+++|..+-.---....+++|++|.+.+.. .......+.+|+++-
T Consensus 52 ~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~----~~~~~~~l~~Gd~i~ 98 (147)
T 2f4p_A 52 DVVFEPGARTHWHSHPGGQILIVTRGKGFYQE----RGKPARILKKGDVVE 98 (147)
T ss_dssp EEEECTTCEECSEECTTCEEEEEEEEEEEEEE----TTSCCEEEETTCEEE
T ss_pred EEEECCCCccCceECCCceEEEEEeCEEEEEE----CCEEEEEECCCCEEE
Confidence 34556776653332334789999999998765 222235678998663
No 60
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=93.61 E-value=0.36 Score=24.78 Aligned_cols=44 Identities=18% Similarity=0.127 Sum_probs=32.7
Q ss_pred EEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEe
Q psy5057 4 KPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFG 53 (87)
Q Consensus 4 ~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g 53 (87)
..+.+|..+-..- ..+.+++|++|.+.+.. +|+ ...+.+||.+-
T Consensus 45 ~~~~pG~~~~~H~-~~~E~~~Vl~G~~~~~~--~g~---~~~l~~GD~v~ 88 (119)
T 3lwc_A 45 GRYAPGQSLTETM-AVDDVMIVLEGRLSVST--DGE---TVTAGPGEIVY 88 (119)
T ss_dssp EEECTTCEEEEEC-SSEEEEEEEEEEEEEEE--TTE---EEEECTTCEEE
T ss_pred EEECCCCCcCccC-CCCEEEEEEeCEEEEEE--CCE---EEEECCCCEEE
Confidence 4567887766553 77899999999999876 222 35789999764
No 61
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=93.32 E-value=0.71 Score=27.92 Aligned_cols=51 Identities=12% Similarity=0.104 Sum_probs=34.7
Q ss_pred eEEecCCCEEEec-CCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEe
Q psy5057 3 EKPVEAGDIVIRQ-GDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFG 53 (87)
Q Consensus 3 ~~~~~~g~~l~~~-g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g 53 (87)
...+++|...-.. ......+++|++|.+++.....+.......+.+||++=
T Consensus 56 ~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~~~~~l~~GD~~~ 107 (361)
T 2vqa_A 56 YMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVEIADVDKGGLWY 107 (361)
T ss_dssp EEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCEEEEEEETTEEEE
T ss_pred EEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcEEEEEEcCCCEEE
Confidence 3456777765432 33378999999999988876633333447899999663
No 62
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=93.04 E-value=0.87 Score=27.54 Aligned_cols=51 Identities=10% Similarity=0.030 Sum_probs=35.1
Q ss_pred eEEecCCCEEEec-CCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEe
Q psy5057 3 EKPVEAGDIVIRQ-GDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFG 53 (87)
Q Consensus 3 ~~~~~~g~~l~~~-g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g 53 (87)
...+++|..+-.. ......+++|++|.+.+.....+.......+.+||++=
T Consensus 238 ~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~~~~~l~~GD~~~ 289 (361)
T 2vqa_A 238 LIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGKASVSRLQQGDVGY 289 (361)
T ss_dssp EEEECTTCEEEEEECSSCCEEEEEEESCEEEEEECSTTCEEEEEECTTCEEE
T ss_pred EEEECCCcccccccCCCCCEEEEEEeCEEEEEEEcCCCcEEEEEECCCCEEE
Confidence 4566777766433 33348999999999988765533334567899999763
No 63
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=92.87 E-value=0.96 Score=27.65 Aligned_cols=51 Identities=14% Similarity=0.020 Sum_probs=33.5
Q ss_pred eEEecCCCEEEec-CCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEe
Q psy5057 3 EKPVEAGDIVIRQ-GDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFG 53 (87)
Q Consensus 3 ~~~~~~g~~l~~~-g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g 53 (87)
...+++|...-.. ......+++|++|.+.+.....+.......+.+||++=
T Consensus 261 ~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~~~ 312 (385)
T 1j58_A 261 LVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGY 312 (385)
T ss_dssp EEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEEEEEEEESSCEEE
T ss_pred EEEECCCcccCceeCCCCCEEEEEEeCeEEEEEEcCCCcEEEEEEcCCCEEE
Confidence 3456777766433 23337999999999987764322223456789999764
No 64
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=92.85 E-value=0.59 Score=28.57 Aligned_cols=51 Identities=6% Similarity=0.020 Sum_probs=34.8
Q ss_pred eEEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEe
Q psy5057 3 EKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFG 53 (87)
Q Consensus 3 ~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g 53 (87)
...+.+|...-..--+...+.+|++|.+++...+.+.......+.+||++=
T Consensus 83 ~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~~~~~l~~GD~~~ 133 (385)
T 1j58_A 83 NMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWY 133 (385)
T ss_dssp EEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEE
T ss_pred EEEECCCCCCCCccCChheEEEEEeeeEEEEEEeCCCcEEEEEeCCCCEEE
Confidence 345677776543333368999999999988876533343445899999663
No 65
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=92.84 E-value=0.29 Score=30.98 Aligned_cols=49 Identities=6% Similarity=0.072 Sum_probs=36.3
Q ss_pred EEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEe
Q psy5057 4 KPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFG 53 (87)
Q Consensus 4 ~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g 53 (87)
..+++|..+...-...+.+++|++|...+.....+.. ....+.+||++-
T Consensus 91 ~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~-~~~~l~~GDv~~ 139 (445)
T 2cav_A 91 YCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGR-DTYKLDQGDAIK 139 (445)
T ss_dssp EEECSSEEEEEEEESSEEEEEEEESEEEEEEEETTEE-EEEEEETTEEEE
T ss_pred EEECCCcCccCcCCCCceEEEEEeCEEEEEEEeCCCC-EEEEecCCCEEE
Confidence 4667777666555567899999999998876654333 567899999763
No 66
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=92.82 E-value=0.2 Score=24.47 Aligned_cols=47 Identities=11% Similarity=0.043 Sum_probs=29.6
Q ss_pred eEEecCCCEEEecCCCCC-eEEEEEeceEEEEEeeCCCce-EEEEecCCCeEe
Q psy5057 3 EKPVEAGDIVIRQGDDGD-FFYVIESGRYEASVEIDGEDK-LMHAYEDKGSFG 53 (87)
Q Consensus 3 ~~~~~~g~~l~~~g~~~~-~~~~i~~G~v~~~~~~~~~~~-~~~~~~~g~~~g 53 (87)
...+++|...-..--+.. .+++|++|.+.+.. ... ....+.+|+.+=
T Consensus 22 ~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~----~~g~~~~~l~~Gd~~~ 70 (97)
T 2fqp_A 22 EWRFPPGGETGWHRHSMDYVVVPMTTGPLLLET----PEGSVTSQLTRGVSYT 70 (97)
T ss_dssp EEEECTTCBCCSEECCSCEEEEESSCEEEEEEE----TTEEEEEEECTTCCEE
T ss_pred EEEECCCCCCCCEECCCCcEEEEEeecEEEEEe----CCCCEEEEEcCCCEEE
Confidence 345667765422222233 59999999998776 332 456899999663
No 67
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=92.80 E-value=0.77 Score=29.37 Aligned_cols=50 Identities=10% Similarity=0.066 Sum_probs=36.1
Q ss_pred eEEecCCCEEEecC-CCCCeEEEEEeceEEEEEee-CCCceEEEEecCCCeE
Q psy5057 3 EKPVEAGDIVIRQG-DDGDFFYVIESGRYEASVEI-DGEDKLMHAYEDKGSF 52 (87)
Q Consensus 3 ~~~~~~g~~l~~~g-~~~~~~~~i~~G~v~~~~~~-~~~~~~~~~~~~g~~~ 52 (87)
...+++|..+-.-- ..+..+++|++|...+.... +|+......+.+||++
T Consensus 342 ~v~l~pGa~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~~~~~l~~GDv~ 393 (476)
T 1fxz_A 342 FGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVL 393 (476)
T ss_dssp EEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred EEEecCCceecceECCCCCEEEEEEeCEEEEEEEecCCCEEeeeEEcCCCEE
Confidence 45667777654332 34689999999999888765 4555556679999966
No 68
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=92.50 E-value=0.7 Score=25.64 Aligned_cols=37 Identities=14% Similarity=0.088 Sum_probs=28.3
Q ss_pred CCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEehh
Q psy5057 18 DGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGEL 55 (87)
Q Consensus 18 ~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g~~ 55 (87)
+.+.++++++|.+.+-..++|+ .....+++|++|=..
T Consensus 54 ~~dE~FyvlkG~m~i~v~d~g~-~~~v~l~eGE~f~lP 90 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLNLWVDGR-RERADLKEGDIFLLP 90 (174)
T ss_dssp SSCEEEEEEESCEEEEEEETTE-EEEEEECTTCEEEEC
T ss_pred CCceEEEEEeeEEEEEEEcCCc-eeeEEECCCCEEEeC
Confidence 5689999999999887765443 455788999988543
No 69
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=92.38 E-value=0.88 Score=29.41 Aligned_cols=50 Identities=8% Similarity=0.081 Sum_probs=35.8
Q ss_pred eEEecCCCEEEec-CCCCCeEEEEEeceEEEEEee-CCCceEEEEecCCCeE
Q psy5057 3 EKPVEAGDIVIRQ-GDDGDFFYVIESGRYEASVEI-DGEDKLMHAYEDKGSF 52 (87)
Q Consensus 3 ~~~~~~g~~l~~~-g~~~~~~~~i~~G~v~~~~~~-~~~~~~~~~~~~g~~~ 52 (87)
...+++|..+-.- ...+..+++|++|.+.+.... +|+......+.+||++
T Consensus 376 ~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~~~~l~~GDv~ 427 (510)
T 3c3v_A 376 YGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEELQEGHVL 427 (510)
T ss_dssp EEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred EEEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCCCEEEeEEEcCCcEE
Confidence 3566777765433 234689999999999887766 4555555679999966
No 70
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=92.23 E-value=0.89 Score=29.21 Aligned_cols=51 Identities=8% Similarity=-0.048 Sum_probs=35.9
Q ss_pred eEEecCCCEEEecC-CCCCeEEEEEeceEEEEEee-CCCceEEEEecCCCeEe
Q psy5057 3 EKPVEAGDIVIRQG-DDGDFFYVIESGRYEASVEI-DGEDKLMHAYEDKGSFG 53 (87)
Q Consensus 3 ~~~~~~g~~l~~~g-~~~~~~~~i~~G~v~~~~~~-~~~~~~~~~~~~g~~~g 53 (87)
...+++|..+-.-- ..++.+++|++|.+.+.... +|+......+.+|+++=
T Consensus 371 ~v~l~pG~~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~g~~~~~~~l~~GDv~v 423 (493)
T 2d5f_A 371 YVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNAQGNAVFDGELRRGQLLV 423 (493)
T ss_dssp EEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred EEEccCCceeeeeECCCCCEEEEEEeceEEEEEEcCCCCEEEeEEEcCCCEEE
Confidence 35567777655432 34689999999999887766 34544446799999774
No 71
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=92.08 E-value=0.41 Score=30.01 Aligned_cols=49 Identities=16% Similarity=0.210 Sum_probs=36.2
Q ss_pred eEEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeE
Q psy5057 3 EKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSF 52 (87)
Q Consensus 3 ~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~ 52 (87)
...+++|..+...-...+.+++|++|...+.....+ ......+.+||++
T Consensus 53 ~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~~-~~~~~~l~~GDv~ 101 (416)
T 1uij_A 53 QFQSKPNTILLPHHADADFLLFVLSGRAILTLVNND-DRDSYNLHPGDAQ 101 (416)
T ss_dssp EEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSS-CEEEEEECTTEEE
T ss_pred EEEeccCcCcccccCCCceEEEEEeeEEEEEEEECC-CCeEEEecCCCEE
Confidence 456778876665566678999999999988765543 3345688999966
No 72
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=92.03 E-value=0.82 Score=25.39 Aligned_cols=59 Identities=8% Similarity=0.027 Sum_probs=38.0
Q ss_pred CCCCeEEEEEeceEEEEEeeCC---CceEEEEecCCCeEehhhhhcCCCceeEEEEecceeEEEEch
Q psy5057 17 DDGDFFYVIESGRYEASVEIDG---EDKLMHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDR 80 (87)
Q Consensus 17 ~~~~~~~~i~~G~v~~~~~~~~---~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (87)
++.+.++++++|.+.+-..++| +......+++|++|-... +.++. -++..++..+.+-+
T Consensus 52 ~~~eE~Fy~lkG~m~l~v~d~g~~~~~~~dv~i~eGdmfllP~---gvpHs--P~r~~e~v~lviEr 113 (176)
T 1zvf_A 52 NPTPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYLLPG---NVPHS--PVRFADTVGIVVEQ 113 (176)
T ss_dssp CSSCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEEEECT---TCCEE--EEECTTCEEEEEEE
T ss_pred CCCceEEEEEeCEEEEEEEcCCCcccceeeEEECCCCEEEcCC---CCCcC--CcccCCcEEEEEEe
Confidence 4457999999999998876644 234567889999885432 23332 22345666665544
No 73
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A
Probab=91.75 E-value=1.1 Score=29.13 Aligned_cols=51 Identities=12% Similarity=0.037 Sum_probs=38.5
Q ss_pred eEEecCCCEEEec-CCCCCeEEEEEeceEEEEEee-CCCceEEEEecCCCeEe
Q psy5057 3 EKPVEAGDIVIRQ-GDDGDFFYVIESGRYEASVEI-DGEDKLMHAYEDKGSFG 53 (87)
Q Consensus 3 ~~~~~~g~~l~~~-g~~~~~~~~i~~G~v~~~~~~-~~~~~~~~~~~~g~~~g 53 (87)
...+.+|-++-.- ...++.+.+|++|.+++.... +|+......+.+||+|=
T Consensus 398 ~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~G~~v~~~~L~~GDV~v 450 (531)
T 3fz3_A 398 RGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVNENGDAILDQEVQQGQLFI 450 (531)
T ss_dssp EEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred EEEeecCccccceEcCCCCEEEEEEeCcEEEEEEeCCCcEEEEEEecCCeEEE
Confidence 3566777776543 234689999999999988876 56666778999999774
No 74
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=91.73 E-value=0.89 Score=24.65 Aligned_cols=45 Identities=13% Similarity=0.194 Sum_probs=29.5
Q ss_pred EEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEe
Q psy5057 4 KPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFG 53 (87)
Q Consensus 4 ~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g 53 (87)
..+++|...-..--....+++|++|.+.+.. ... ...+.+|+++=
T Consensus 61 ~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i----~~~-~~~l~~Gd~i~ 105 (167)
T 3ibm_A 61 FEVEPGGYTTLERHEHTHVVMVVRGHAEVVL----DDR-VEPLTPLDCVY 105 (167)
T ss_dssp EEECTTCBCCCBBCSSCEEEEEEESEEEEEE----TTE-EEEECTTCEEE
T ss_pred EEECCCCCCCCccCCCcEEEEEEeCEEEEEE----CCE-EEEECCCCEEE
Confidence 3455665443333346889999999998765 222 56789999663
No 75
>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}
Probab=91.70 E-value=1.3 Score=26.34 Aligned_cols=75 Identities=13% Similarity=0.161 Sum_probs=51.0
Q ss_pred eEEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEe-cCCCeEehh---hhhcCCCceeEEEEecceeEEEE
Q psy5057 3 EKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAY-EDKGSFGEL---ALLYNMPRAATIKATSTGSLWAM 78 (87)
Q Consensus 3 ~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~-~~g~~~g~~---~~~~~~~~~~~~~a~~~~~~~~~ 78 (87)
...+++|+.+--+-+......+++.|.+.+.. .......+ ...+.|... ++.-......++.|.++++++..
T Consensus 33 ~~~L~~Ge~~~~~~~~~E~~iv~l~G~~~V~~----~g~~~~~~g~R~svF~~~~p~~lYvp~g~~v~i~a~~~~~~~v~ 108 (270)
T 2qjv_A 33 VWQLXAGESITLPSDERERCLVLVAGLASVXA----ADSFFYRIGQRMSPFERIPAYSVYLPHHTEAXVTAETDLELAVC 108 (270)
T ss_dssp EEEECTTCEEEECCSSEEEEEEEEESCEEEEE----TTEEEEEECCCSSGGGCSCCCEEEECSSCCEEEEESSSEEEEEE
T ss_pred EEEecCCCEEEecCCCcEEEEEEecceEEEEE----CCEEEeccccccccccCCCCcEEEECCCCEEEEEecCCceEEEE
Confidence 46678999988887777888899999998776 33333332 334566432 33333444788999999998877
Q ss_pred chh
Q psy5057 79 DRK 81 (87)
Q Consensus 79 ~~~ 81 (87)
+..
T Consensus 109 sAp 111 (270)
T 2qjv_A 109 SAP 111 (270)
T ss_dssp EEE
T ss_pred eee
Confidence 653
No 76
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=91.68 E-value=0.7 Score=23.36 Aligned_cols=45 Identities=9% Similarity=0.046 Sum_probs=32.1
Q ss_pred eEEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeE
Q psy5057 3 EKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSF 52 (87)
Q Consensus 3 ~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~ 52 (87)
...+++|..+-.---+...+++|++|.+.+.. .. ....+.+|+++
T Consensus 45 ~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~----~~-~~~~l~~Gd~~ 89 (126)
T 4e2g_A 45 WVRIEPNTEMPAHEHPHEQAGVMLEGTLELTI----GE-ETRVLRPGMAY 89 (126)
T ss_dssp EEEECTTCEEEEECCSSEEEEEEEEECEEEEE----TT-EEEEECTTEEE
T ss_pred EEEECCCCcCCCccCCCceEEEEEEeEEEEEE----CC-EEEEeCCCCEE
Confidence 34567787765544456889999999998766 22 23678999865
No 77
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=91.50 E-value=0.46 Score=23.41 Aligned_cols=56 Identities=9% Similarity=-0.015 Sum_probs=34.3
Q ss_pred CCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEehhhhhcCCCceeEEEEecceeEEEEchhhh
Q psy5057 19 GDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTF 83 (87)
Q Consensus 19 ~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 83 (87)
...+++|++|.+.+.. .......+.+|+.+=. ..+.++.. .+.+++.++.+.....
T Consensus 48 ~~E~~~Vl~G~~~~~~----~~~~~~~l~~Gd~~~i---p~~~~H~~--~~~~~~~~l~i~~~~~ 103 (107)
T 2i45_A 48 SDKVLFAVEGDMAVDF----ADGGSMTIREGEMAVV---PKSVSHRP--RSENGCSLVLIELSDP 103 (107)
T ss_dssp CCEEEEESSSCEEEEE----TTSCEEEECTTEEEEE---CTTCCEEE--EEEEEEEEEEEECC--
T ss_pred CCEEEEEEeCEEEEEE----CCCcEEEECCCCEEEE---CCCCcEee--EeCCCeEEEEEECCCc
Confidence 3789999999998765 2212467899996632 22334432 3345677777765544
No 78
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=91.49 E-value=1.1 Score=25.40 Aligned_cols=65 Identities=17% Similarity=0.103 Sum_probs=43.2
Q ss_pred eEEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEehhhhhcCCCceeEEEE-ecceeEEE
Q psy5057 3 EKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYNMPRAATIKA-TSTGSLWA 77 (87)
Q Consensus 3 ~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a-~~~~~~~~ 77 (87)
...+++|+.+-..--+...++++++|.+.+.. ... ...+.+|+++=.. .+.+ ..+.+ .++++++.
T Consensus 157 ~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i----~g~-~~~l~~Gd~i~ip---~~~~--H~~~~~~~~~~~ll 222 (227)
T 3rns_A 157 IMSFWKGESLDPHKAPGDALVTVLDGEGKYYV----DGK-PFIVKKGESAVLP---ANIP--HAVEAETENFKMLL 222 (227)
T ss_dssp EEEECTTCEEEEECCSSEEEEEEEEEEEEEEE----TTE-EEEEETTEEEEEC---TTSC--EEEECCSSCEEEEE
T ss_pred EEEECCCCccCCEECCCcEEEEEEeEEEEEEE----CCE-EEEECCCCEEEEC---CCCc--EEEEeCCCCEEEEE
Confidence 45678898877655566789999999998775 222 4778999966322 2223 34556 67766554
No 79
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=91.22 E-value=0.44 Score=23.85 Aligned_cols=44 Identities=16% Similarity=0.292 Sum_probs=26.8
Q ss_pred EecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeE
Q psy5057 5 PVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSF 52 (87)
Q Consensus 5 ~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~ 52 (87)
.+++|...-.---....++++++|.+.+.. .......+.+|+++
T Consensus 33 ~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i----~~~~~~~l~~Gd~i 76 (117)
T 2b8m_A 33 VLPRGEQMPKHYSNSYVHLIIIKGEMTLTL----EDQEPHNYKEGNIV 76 (117)
T ss_dssp EEETTCBCCCEECSSCEEEEEEESEEEEEE----TTSCCEEEETTCEE
T ss_pred EECCCCcCCCEeCCCcEEEEEEeCEEEEEE----CCEEEEEeCCCCEE
Confidence 445555432222245678999999998765 22222367899865
No 80
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=91.14 E-value=0.77 Score=22.83 Aligned_cols=44 Identities=18% Similarity=0.052 Sum_probs=29.5
Q ss_pred EEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEe
Q psy5057 4 KPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFG 53 (87)
Q Consensus 4 ~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g 53 (87)
..+++|..-.. -+...+++|++|.+.+.. .......+.+||.+-
T Consensus 36 ~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i----~~g~~~~l~~GD~i~ 79 (101)
T 1o5u_A 36 WEKEVSEFDWY--YDTNETCYILEGKVEVTT----EDGKKYVIEKGDLVT 79 (101)
T ss_dssp EEECSEEEEEE--CSSCEEEEEEEEEEEEEE----TTCCEEEEETTCEEE
T ss_pred EEeCCCccccc--CCceEEEEEEeCEEEEEE----CCCCEEEECCCCEEE
Confidence 34566655443 345789999999998776 211246789999663
No 81
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=91.10 E-value=1.1 Score=24.58 Aligned_cols=48 Identities=15% Similarity=0.055 Sum_probs=29.6
Q ss_pred EecCCCEEE---ecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEe
Q psy5057 5 PVEAGDIVI---RQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFG 53 (87)
Q Consensus 5 ~~~~g~~l~---~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g 53 (87)
.+++|.... ....+...+++|++|.+.+.... +.......+.+||++-
T Consensus 123 ~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~-~~~~~~~~l~~GD~~~ 173 (198)
T 2bnm_A 123 DVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGD-KENPKEALLPTGASMF 173 (198)
T ss_dssp EECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESC-TTSCEEEEECTTCEEE
T ss_pred EEcCCCCCcccccccCCCeEEEEEEeeeEEEEECC-cCCcccEEECCCCEEE
Confidence 455655432 11223368999999999877632 1122457899999763
No 82
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=90.65 E-value=1.4 Score=26.31 Aligned_cols=62 Identities=11% Similarity=0.010 Sum_probs=40.5
Q ss_pred EEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEehhhhhcCCCceeEEEEecceeEEEEch
Q psy5057 12 VIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDR 80 (87)
Q Consensus 12 l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (87)
.++ -+..+.++++++|.+.+-..++|+ .....+++|++|=...-..+ +=++..+|.++.+.+
T Consensus 45 d~H-~~~~dE~FyqlkG~m~l~~~d~g~-~~~V~i~eGemfllP~gv~H-----sP~r~~et~gLviE~ 106 (286)
T 2qnk_A 45 DYH-IEEGEEVFYQLEGDMVLRVLEQGK-HRDVVIRQGEIFLLPARVPH-----SPQRFANTVGLVVER 106 (286)
T ss_dssp CEE-ECSSCEEEEEEESCEEEEEEETTE-EEEEEECTTEEEEECTTCCE-----EEEECTTCEEEEEEE
T ss_pred cCc-CCCCCeEEEEEeCeEEEEEEeCCc-eeeEEECCCeEEEeCCCCCc-----CCcccCCeEEEEEee
Confidence 344 445689999999999888765554 44577899998854433322 223455677666654
No 83
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=90.62 E-value=0.7 Score=29.14 Aligned_cols=50 Identities=14% Similarity=0.156 Sum_probs=36.8
Q ss_pred eEEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEe
Q psy5057 3 EKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFG 53 (87)
Q Consensus 3 ~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g 53 (87)
...+++|..+...-..++.+++|++|...+....++. .....+.+||++-
T Consensus 65 ~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~~~-~~~~~l~~GDv~~ 114 (434)
T 2ea7_A 65 EFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNPDS-RDSYILEQGHAQK 114 (434)
T ss_dssp EEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSC-EEEEEEETTEEEE
T ss_pred EEEecCCcCccCccCCCceEEEEEecEEEEEEEeCCC-CEEEEeCCCCEEE
Confidence 3566788777666666789999999999887665332 4466889999663
No 84
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=90.51 E-value=0.82 Score=24.87 Aligned_cols=30 Identities=20% Similarity=0.041 Sum_probs=21.8
Q ss_pred CCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeE
Q psy5057 18 DGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSF 52 (87)
Q Consensus 18 ~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~ 52 (87)
....+++|++|.+.+.. .. ....+.+|+++
T Consensus 72 ~~~E~~~Vl~G~~~~~v----~g-~~~~l~~GD~i 101 (166)
T 3jzv_A 72 QHAHGVMILKGRGHAMV----GR-AVSAVAPYDLV 101 (166)
T ss_dssp SSCEEEEEEEECEEEEE----TT-EEEEECTTCEE
T ss_pred CCcEEEEEEeCEEEEEE----CC-EEEEeCCCCEE
Confidence 34678899999998765 22 24678999866
No 85
>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}
Probab=90.50 E-value=2.3 Score=27.44 Aligned_cols=50 Identities=10% Similarity=0.089 Sum_probs=36.5
Q ss_pred EEecCCCEEEecC-CCCCeEEEEEeceEEEEEee-CCCceEEEEecCCCeEe
Q psy5057 4 KPVEAGDIVIRQG-DDGDFFYVIESGRYEASVEI-DGEDKLMHAYEDKGSFG 53 (87)
Q Consensus 4 ~~~~~g~~l~~~g-~~~~~~~~i~~G~v~~~~~~-~~~~~~~~~~~~g~~~g 53 (87)
..+.+|-+.-.-= ..++.+.+|++|.+++.... +|+......+.+||+|=
T Consensus 363 v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~~~f~~~l~~GDV~v 414 (496)
T 3ksc_A 363 GSLHKNAMFVPHYNLNANSIIYALKGRARLQVVNCNGNTVFDGELEAGRALT 414 (496)
T ss_dssp EEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred EEeeCCeEECCeeCCCCCEEEEEEeceEEEEEEeCCCcEEEEEEecCCeEEE
Confidence 4566666655432 45789999999999998877 45555556899999763
No 86
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=90.37 E-value=0.89 Score=22.24 Aligned_cols=45 Identities=20% Similarity=0.189 Sum_probs=31.2
Q ss_pred eEEecCCCEEEec--CCC-CCeEEEEEeceEEEEEeeCCCceEEEEecCCCeE
Q psy5057 3 EKPVEAGDIVIRQ--GDD-GDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSF 52 (87)
Q Consensus 3 ~~~~~~g~~l~~~--g~~-~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~ 52 (87)
...+++|..+-.. --. ...+++|++|.+.+.. .. ....+.+|+++
T Consensus 25 ~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~----~~-~~~~l~~Gd~~ 72 (113)
T 2gu9_A 25 EMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIV----DG-HTQALQAGSLI 72 (113)
T ss_dssp EEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEE----TT-EEEEECTTEEE
T ss_pred EEEECCCCccCCcccccCCCcEEEEEEeCEEEEEE----CC-EEEEeCCCCEE
Confidence 3456788776543 333 6789999999998766 22 23678899866
No 87
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=90.34 E-value=1 Score=22.94 Aligned_cols=43 Identities=14% Similarity=0.158 Sum_probs=27.2
Q ss_pred EecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeE
Q psy5057 5 PVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSF 52 (87)
Q Consensus 5 ~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~ 52 (87)
.+++|...-.---....+++|++|.+.... +++ ...+.+|+++
T Consensus 54 ~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i--~~~---~~~l~~Gd~i 96 (126)
T 1vj2_A 54 TVEPGGLIDRHSHPWEHEIFVLKGKLTVLK--EQG---EETVEEGFYI 96 (126)
T ss_dssp EEEEEEEEEEECCSSCEEEEEEESEEEEEC--SSC---EEEEETTEEE
T ss_pred EECCCCcCCceeCCCcEEEEEEEeEEEEEE--CCE---EEEECCCCEE
Confidence 445555443333346789999999987665 222 3577888866
No 88
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A
Probab=90.33 E-value=2.3 Score=27.08 Aligned_cols=51 Identities=8% Similarity=-0.012 Sum_probs=36.4
Q ss_pred eEEecCCCEEEec-CCCCCeEEEEEeceEEEEEee-CCCceEEEEecCCCeEe
Q psy5057 3 EKPVEAGDIVIRQ-GDDGDFFYVIESGRYEASVEI-DGEDKLMHAYEDKGSFG 53 (87)
Q Consensus 3 ~~~~~~g~~l~~~-g~~~~~~~~i~~G~v~~~~~~-~~~~~~~~~~~~g~~~g 53 (87)
...+.+|-+...- ...+..+++|++|..++.... +|+......+.+||+|=
T Consensus 326 ~v~l~pG~~~~pH~Hp~A~Ei~yV~~G~~~v~vv~~~g~~~~~~~l~~GDv~v 378 (459)
T 2e9q_A 326 RGVLYSNAMVAPHYTVNSHSVMYATRGNARVQVVDNFGQSVFDGEVREGQVLM 378 (459)
T ss_dssp EEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred EEEeeCCcCccceECCCCCEEEEEEeeEEEEEEEeCCCCEEEeeEEeCCcEEE
Confidence 3456677665543 234689999999999998876 55554456799999773
No 89
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=90.23 E-value=0.96 Score=22.39 Aligned_cols=66 Identities=15% Similarity=0.174 Sum_probs=40.8
Q ss_pred eEEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEehhhhhcCCCceeEEEEecceeEEEE
Q psy5057 3 EKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAM 78 (87)
Q Consensus 3 ~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~ 78 (87)
...+++|..+-.---....++++++|.+.+.. .. ....+.+|+++=.. .+.++ .+.+..+++++.+
T Consensus 44 ~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~----~~-~~~~l~~Gd~~~ip---~~~~H--~~~~~~~~~~~~v 109 (115)
T 1yhf_A 44 VFSLDKGQEIGRHSSPGDAMVTILSGLAEITI----DQ-ETYRVAEGQTIVMP---AGIPH--ALYAVEAFQMLLV 109 (115)
T ss_dssp EEEECTTCEEEEECCSSEEEEEEEESEEEEEE----TT-EEEEEETTCEEEEC---TTSCE--EEEESSCEEEEEE
T ss_pred EEEECCCCccCCEECCCcEEEEEEeCEEEEEE----CC-EEEEECCCCEEEEC---CCCCE--EEEECCCceEEEE
Confidence 34567887765444446789999999998765 22 23678999966321 22333 3455556665543
No 90
>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*
Probab=90.14 E-value=0.68 Score=28.92 Aligned_cols=48 Identities=13% Similarity=0.152 Sum_probs=36.7
Q ss_pred eEEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCe
Q psy5057 3 EKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGS 51 (87)
Q Consensus 3 ~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~ 51 (87)
...+++|..+...--.++.+++|++|...+.....+.. ....+.+||+
T Consensus 56 ~~~l~pgg~~~ph~~~a~ei~yVl~G~~~v~~v~~~~~-~~~~l~~GDv 103 (397)
T 2phl_A 56 EFRSKPETLLLPQQADAELLLVVRSGSAILVLVKPDDR-REYFFLTSDN 103 (397)
T ss_dssp EEEECSSEEEEEEEESEEEEEEEEESEEEEEEEETTTE-EEEEEEESSC
T ss_pred EEEECCCcCccCEecCCCeEEEEEeeeEEEEEEeCCCc-EEEEECCCCc
Confidence 45667887766555577899999999998887764444 3678999998
No 91
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=90.06 E-value=1.3 Score=23.79 Aligned_cols=46 Identities=13% Similarity=0.068 Sum_probs=29.4
Q ss_pred eEEecCCCEE--EecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEe
Q psy5057 3 EKPVEAGDIV--IRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFG 53 (87)
Q Consensus 3 ~~~~~~g~~l--~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g 53 (87)
...+++|... .+.....+.+++|++|.+.+.. ... ...+.+|+++-
T Consensus 47 ~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~----~~~-~~~l~~GD~i~ 94 (163)
T 3i7d_A 47 LVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVD----DQG-EHPMVPGDCAA 94 (163)
T ss_dssp EEEECTTCBSSSSEEESSCCEEEEEEESCEEEEE----TTE-EEEECTTCEEE
T ss_pred EEEECCCCcCCCCccCCCCcEEEEEEECEEEEEE----CCE-EEEeCCCCEEE
Confidence 3455666643 1222233689999999998876 332 46789998653
No 92
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=90.04 E-value=1.3 Score=23.62 Aligned_cols=49 Identities=6% Similarity=0.104 Sum_probs=29.4
Q ss_pred EEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCC----CceEEEEecCCCeE
Q psy5057 4 KPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDG----EDKLMHAYEDKGSF 52 (87)
Q Consensus 4 ~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~----~~~~~~~~~~g~~~ 52 (87)
..+++|...-..--....+++|++|.+.+.....+ .......+.+|+++
T Consensus 46 ~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~~~~~~~~~l~~Gd~i 98 (163)
T 1lr5_A 46 QTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTF 98 (163)
T ss_dssp EEECTTCBCCEEEESSCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEE
T ss_pred EEECCCCcCCCeECCCCeEEEEEeCEEEEEECCccccccCccEEEEeCCCCEE
Confidence 34566654321111346799999999987764311 12255678999865
No 93
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=90.02 E-value=1.1 Score=25.72 Aligned_cols=45 Identities=13% Similarity=-0.075 Sum_probs=31.8
Q ss_pred EEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeE
Q psy5057 4 KPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSF 52 (87)
Q Consensus 4 ~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~ 52 (87)
..+.+|...-.-.-+.+.+|+|++|.++... .......+++|+.+
T Consensus 137 v~l~PG~~yP~HsHp~EEiy~VLsG~~e~~v----~~g~~~~l~pGd~v 181 (217)
T 4b29_A 137 GYWGPGLDYGWHEHLPEELYSVVSGRALFHL----RNAPDLMLEPGQTR 181 (217)
T ss_dssp EEECSSCEEEEEECSSEEEEEEEEECEEEEE----TTSCCEEECTTCEE
T ss_pred EEECCCCcCCCCCCCCceEEEEEeCCEEEEE----CCCCEEecCCCCEE
Confidence 3456776655445567899999999987766 33345678899865
No 94
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=89.96 E-value=1.3 Score=23.65 Aligned_cols=61 Identities=5% Similarity=-0.060 Sum_probs=39.3
Q ss_pred cCCCCCeEEEEEeceEEEEEeeC---CCceEEEEecCCCeEehhhhhcCCCceeEEEEecceeEEEEch
Q psy5057 15 QGDDGDFFYVIESGRYEASVEID---GEDKLMHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDR 80 (87)
Q Consensus 15 ~g~~~~~~~~i~~G~v~~~~~~~---~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~ 80 (87)
..+..+.+|+|++|.+.+..... +.......+.+|+++=.. + -.-..-.|..+|.++.+..
T Consensus 46 ~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yvVP----k-GveH~p~a~~e~~vLLiEp 109 (140)
T 3d0j_A 46 IHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNVP----A-ECWFYSITQKDTKMMYVQD 109 (140)
T ss_dssp EESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEEEC----T-TCEEEEEECTTCEEEEEEE
T ss_pred cCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEEeC----C-CccCcccCCCceEEEEEEe
Confidence 34556999999999999887541 112345778999977432 1 1123456677787776643
No 95
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=89.75 E-value=1.4 Score=23.46 Aligned_cols=44 Identities=11% Similarity=0.040 Sum_probs=28.3
Q ss_pred EEecCCCE-E-EecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeE
Q psy5057 4 KPVEAGDI-V-IRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSF 52 (87)
Q Consensus 4 ~~~~~g~~-l-~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~ 52 (87)
..+++|.. . .+.......+++|++|.+.+.. ... ...+.+|+++
T Consensus 51 ~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~----~~~-~~~l~~Gd~i 96 (162)
T 3l2h_A 51 IQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTM----END-QYPIAPGDFV 96 (162)
T ss_dssp EEECTTCBSSSSBEESSCCEEEEEEESCEEEEE----TTE-EEEECTTCEE
T ss_pred EEECCCCcCCCCccCCCCCEEEEEEEEEEEEEE----CCE-EEEeCCCCEE
Confidence 44566653 1 1112245789999999998775 222 3678999966
No 96
>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A
Probab=89.68 E-value=0.85 Score=28.69 Aligned_cols=49 Identities=14% Similarity=0.258 Sum_probs=37.4
Q ss_pred EEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEe
Q psy5057 4 KPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFG 53 (87)
Q Consensus 4 ~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g 53 (87)
..+.+|.++...--.++.+++|++|...+.....+. .....+.+||++-
T Consensus 49 ~~l~p~gl~~Phh~~A~ei~yV~~G~g~~g~V~~~~-~~~~~l~~GDv~~ 97 (418)
T 3s7i_A 49 IEAKPNTLVLPKHADADNILVIQQGQATVTVANGNN-RKSFNLDEGHALR 97 (418)
T ss_dssp EEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSC-EEEEEEETTEEEE
T ss_pred EEecCCceeeeeeCCCCeEEEEEEeeEEEEEEecCC-EEEEEecCCCEEE
Confidence 456777777777667899999999998887766433 3467889999773
No 97
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=89.46 E-value=1.6 Score=23.91 Aligned_cols=54 Identities=9% Similarity=-0.023 Sum_probs=32.7
Q ss_pred CCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEehhhhhcCCCceeEEEEecceeEEEE
Q psy5057 17 DDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAM 78 (87)
Q Consensus 17 ~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~ 78 (87)
.....+++|++|.+.+.. .. ....+.+|+.+=.. .+.++...-...++++++.+
T Consensus 108 h~gEE~~yVLeG~v~vtl----~g-~~~~L~~Gds~~iP---~g~~H~~~N~~d~~Arll~V 161 (166)
T 2vpv_A 108 FRTYITFHVIQGIVEVTV----CK-NKFLSVKGSTFQIP---AFNEYAIANRGNDEAKMFFV 161 (166)
T ss_dssp CSEEEEEEEEESEEEEEE----TT-EEEEEETTCEEEEC---TTCEEEEEECSSSCEEEEEE
T ss_pred CCceEEEEEEEeEEEEEE----CC-EEEEEcCCCEEEEC---CCCCEEEEECCCCCEEEEEE
Confidence 345789999999999887 33 34578999976422 22333333333344555544
No 98
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=89.32 E-value=1.2 Score=22.09 Aligned_cols=65 Identities=11% Similarity=0.066 Sum_probs=39.9
Q ss_pred EEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEehhhhhcCCCceeEEEEecceeEEEE
Q psy5057 4 KPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAM 78 (87)
Q Consensus 4 ~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~ 78 (87)
..+++|...-.---+...+++|++|.+.+.. +.. ...+.+|+++=.. .+.++ .+.+..++.++.+
T Consensus 39 ~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~----~~~-~~~l~~Gd~~~ip---~~~~H--~~~~~~~~~~l~v 103 (116)
T 2pfw_A 39 IWFDKGAEGYVHAHRHSQVSYVVEGEFHVNV----DGV-IKVLTAGDSFFVP---PHVDH--GAVCPTGGILIDT 103 (116)
T ss_dssp EEECTTEEEEEECCSSEEEEEEEEECEEEEE----TTE-EEEECTTCEEEEC---TTCCE--EEEESSCEEEEEE
T ss_pred EEECCCCcCCcEECCcceEEEEEeeEEEEEE----CCE-EEEeCCCCEEEEC---cCCce--eeEeCCCcEEEEE
Confidence 4567777654333346789999999998766 222 4678999965322 22333 3455556666555
No 99
>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}
Probab=88.79 E-value=2.9 Score=26.76 Aligned_cols=50 Identities=10% Similarity=0.187 Sum_probs=36.0
Q ss_pred EEecCCCEEEec-CCCCCeEEEEEeceEEEEEee-CCCceEEEEecCCCeEe
Q psy5057 4 KPVEAGDIVIRQ-GDDGDFFYVIESGRYEASVEI-DGEDKLMHAYEDKGSFG 53 (87)
Q Consensus 4 ~~~~~g~~l~~~-g~~~~~~~~i~~G~v~~~~~~-~~~~~~~~~~~~g~~~g 53 (87)
..+.+|-+.-.- ...++.+.+|++|.+++.... +|+......+.+||+|=
T Consensus 328 v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~~~f~~~l~~GDV~v 379 (466)
T 3kgl_A 328 GSIRQNAMVLPQWNANANAVLYVTDGEAHVQVVNDNGDRVFDGQVSQGQLLS 379 (466)
T ss_dssp EEEETTEEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred EEeecCcEeeeeECCCCCEEEEEEeceEEEEEEeCCCcEEEEeEecCCcEEE
Confidence 445566554433 235689999999999998887 56666677899999763
No 100
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=88.76 E-value=1.5 Score=22.60 Aligned_cols=44 Identities=11% Similarity=-0.075 Sum_probs=28.9
Q ss_pred EEecCCCEEEecCCC-CCeEEEEEeceEEEEEeeCCCceEEEEecCCCeE
Q psy5057 4 KPVEAGDIVIRQGDD-GDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSF 52 (87)
Q Consensus 4 ~~~~~g~~l~~~g~~-~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~ 52 (87)
..+++|..+-.---. ...+++|++|.+.+.. .. ....+.+|+++
T Consensus 62 ~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i----~~-~~~~l~~Gd~i 106 (133)
T 1o4t_A 62 MKLPPGSSVGLHKHEGEFEIYYILLGEGVFHD----NG-KDVPIKAGDVC 106 (133)
T ss_dssp EEECTTCEEEEEECCSEEEEEEEEESEEEEEE----TT-EEEEEETTEEE
T ss_pred EEECCCCccCceECCCccEEEEEEeCEEEEEE----CC-EEEEeCCCcEE
Confidence 455777655332222 3689999999988765 22 24678899866
No 101
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=88.74 E-value=2 Score=23.94 Aligned_cols=51 Identities=6% Similarity=-0.053 Sum_probs=34.4
Q ss_pred eEEecCCCEEEec-CCCCCeEEEEEeceEEEEEeeCC---CceEEEEecCCCeEe
Q psy5057 3 EKPVEAGDIVIRQ-GDDGDFFYVIESGRYEASVEIDG---EDKLMHAYEDKGSFG 53 (87)
Q Consensus 3 ~~~~~~g~~l~~~-g~~~~~~~~i~~G~v~~~~~~~~---~~~~~~~~~~g~~~g 53 (87)
...+++|...-.- ......+++|++|.+.+.....+ +......+.+|+++-
T Consensus 76 ~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~~~~l~~GD~~~ 130 (201)
T 1fi2_A 76 RVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFV 130 (201)
T ss_dssp EEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEEEEEEETTCEEE
T ss_pred EEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEEEEEECCCCEEE
Confidence 3456777755433 33357999999999988765432 444467899999663
No 102
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=88.73 E-value=2.6 Score=26.31 Aligned_cols=73 Identities=12% Similarity=0.175 Sum_probs=42.2
Q ss_pred EEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEehhhhhcCCCceeEEEE-ecceeEEEEchhh
Q psy5057 4 KPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYNMPRAATIKA-TSTGSLWAMDRKT 82 (87)
Q Consensus 4 ~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a-~~~~~~~~~~~~~ 82 (87)
..+++|+..-..--....+|+|++|...+.. +| ....+++||+|-..+ ...+...-.. .+++.++.+....
T Consensus 299 ~~l~PG~~~~~HrH~~~~v~~VleG~G~~~V--~g---e~~~~~~GD~~~iP~---g~~H~~~N~g~~e~~~ll~i~D~P 370 (394)
T 3bu7_A 299 QMLRPGEHTKAHRHTGNVIYNVAKGQGYSIV--GG---KRFDWSEHDIFCVPA---WTWHEHCNTQERDDACLFSFNDFP 370 (394)
T ss_dssp EEECTTCBCCCEEESSCEEEEEEECCEEEEE--TT---EEEEECTTCEEEECT---TCCEEEEECCSSCCEEEEEEESHH
T ss_pred EEECCCCcCCCcccCCcEEEEEEeCeEEEEE--CC---EEEEEeCCCEEEECC---CCeEEeEeCCCCCCeEEEEeeCHH
Confidence 4556666655444456789999999975443 22 346789999774332 2222221111 3467777776554
Q ss_pred hh
Q psy5057 83 FY 84 (87)
Q Consensus 83 ~~ 84 (87)
+.
T Consensus 371 l~ 372 (394)
T 3bu7_A 371 VM 372 (394)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 103
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=88.55 E-value=0.57 Score=24.19 Aligned_cols=43 Identities=16% Similarity=0.060 Sum_probs=27.6
Q ss_pred ecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEe
Q psy5057 6 VEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFG 53 (87)
Q Consensus 6 ~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g 53 (87)
..+|..-+.. +..+.+++|++|.+.+... +|. ...+++||.+-
T Consensus 49 ~tPG~~~~~~-~~~~E~~~iLeG~~~lt~d-dG~---~~~l~aGD~~~ 91 (116)
T 3es4_A 49 AEPGIYNYAG-RDLEETFVVVEGEALYSQA-DAD---PVKIGPGSIVS 91 (116)
T ss_dssp ECSEEEEECC-CSEEEEEEEEECCEEEEET-TCC---CEEECTTEEEE
T ss_pred cCCceeECee-CCCcEEEEEEEeEEEEEeC-CCe---EEEECCCCEEE
Confidence 3444443333 2235899999999988752 333 46789999764
No 104
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=88.48 E-value=0.56 Score=24.26 Aligned_cols=30 Identities=23% Similarity=0.220 Sum_probs=22.3
Q ss_pred CeEEEEEeceEEEEEeeCCCceEEEEecCCCeEe
Q psy5057 20 DFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFG 53 (87)
Q Consensus 20 ~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g 53 (87)
+.+++|++|.+.+... +|+ ...+++||.+-
T Consensus 69 ~E~~~Vl~G~~~l~~~-~g~---~~~l~~GD~~~ 98 (123)
T 3bcw_A 69 IEYCHIIEGEARLVDP-DGT---VHAVKAGDAFI 98 (123)
T ss_dssp EEEEEEEEEEEEEECT-TCC---EEEEETTCEEE
T ss_pred cEEEEEEEEEEEEEEC-CCe---EEEECCCCEEE
Confidence 7899999999987652 222 35689999774
No 105
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=88.39 E-value=3.1 Score=25.79 Aligned_cols=72 Identities=11% Similarity=0.131 Sum_probs=48.8
Q ss_pred EEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEehhhhhcCCCceeEEEEecceeEEEEchhhh
Q psy5057 4 KPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTF 83 (87)
Q Consensus 4 ~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 83 (87)
..+++|+..-..-.....+|.|++|.-.... .. ....+.+||+|-..+.. .....+.+++.++.++-..+
T Consensus 284 ~~L~pG~~t~~hRht~s~Vy~V~eG~G~~~I----~~-~~~~w~~gD~fvvP~w~-----~h~~~n~~~a~Lf~~~D~Pl 353 (368)
T 3nw4_A 284 HRLRAGTETATRNEVGSTVFQVFEGAGAVVM----NG-ETTKLEKGDMFVVPSWV-----PWSLQAETQFDLFRFSDAPI 353 (368)
T ss_dssp EEECTTCBCCCEEESSCEEEEEEESCEEEEE----TT-EEEEECTTCEEEECTTC-----CEEEEESSSEEEEEEESHHH
T ss_pred EEECCCCccCCeeccccEEEEEEeCcEEEEE----CC-EEEEecCCCEEEECCCC-----cEEEEeCCCEEEEEEeCHHH
Confidence 4456666554444567799999999977665 33 24668999988544332 34456778999998887766
Q ss_pred hc
Q psy5057 84 YC 85 (87)
Q Consensus 84 ~~ 85 (87)
.+
T Consensus 354 ~~ 355 (368)
T 3nw4_A 354 ME 355 (368)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 106
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=88.30 E-value=1.9 Score=23.16 Aligned_cols=30 Identities=10% Similarity=0.060 Sum_probs=21.9
Q ss_pred CCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeE
Q psy5057 18 DGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSF 52 (87)
Q Consensus 18 ~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~ 52 (87)
....+++|++|.+.+.. ... ...+.+|+++
T Consensus 63 ~~~E~~~Vl~G~~~v~v----~g~-~~~l~~Gd~i 92 (156)
T 3kgz_A 63 AHVHAVMIHRGHGQCLV----GET-ISDVAQGDLV 92 (156)
T ss_dssp SSCEEEEEEEEEEEEEE----TTE-EEEEETTCEE
T ss_pred CCcEEEEEEeCEEEEEE----CCE-EEEeCCCCEE
Confidence 34678999999998775 222 4677888865
No 107
>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}
Probab=87.98 E-value=3.8 Score=26.27 Aligned_cols=51 Identities=6% Similarity=-0.005 Sum_probs=36.6
Q ss_pred eEEecCCCEEEec-CCCCCeEEEEEeceEEEEEee-CCCceEEEEecCCCeEe
Q psy5057 3 EKPVEAGDIVIRQ-GDDGDFFYVIESGRYEASVEI-DGEDKLMHAYEDKGSFG 53 (87)
Q Consensus 3 ~~~~~~g~~l~~~-g~~~~~~~~i~~G~v~~~~~~-~~~~~~~~~~~~g~~~g 53 (87)
...+.+|-+.-.- ...++.+.+|++|..++.... +|+......+.+||+|=
T Consensus 327 ~v~l~pGgm~~PHwHp~A~Ei~yV~~G~~~v~vV~~~g~~~f~~~l~~GDVfv 379 (465)
T 3qac_A 327 KGVLYRNAMMAPHYNLNAHNIMYCVRGRGRIQIVNDQGQSVFDEELSRGQLVV 379 (465)
T ss_dssp EEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred EEEecCCcEeeeEECCCCCEEEEEEeCCEEEEEEeCCCcEEEEEEecCCeEEE
Confidence 3456666655433 234789999999999998877 45655566899999774
No 108
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A
Probab=87.70 E-value=3.1 Score=26.52 Aligned_cols=51 Identities=6% Similarity=0.178 Sum_probs=36.1
Q ss_pred eEEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCC-Cc--------------------eEEEEecCCCeEe
Q psy5057 3 EKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDG-ED--------------------KLMHAYEDKGSFG 53 (87)
Q Consensus 3 ~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~-~~--------------------~~~~~~~~g~~~g 53 (87)
...+++|-++...-..++.+++|++|...+.....+ ++ ..+..+.+||++-
T Consensus 67 r~~i~pggl~~Ph~h~a~ei~yVl~G~g~vg~v~p~~~~tf~~~~~~~~~~~~~~~d~~q~~~~l~~GDv~~ 138 (459)
T 2e9q_A 67 RHTIRPKGLLLPGFSNAPKLIFVAQGFGIRGIAIPGCAETYQTDLRRSQSAGSAFKDQHQKIRPFREGDLLV 138 (459)
T ss_dssp EEEECTTEEEEEEEESSCEEEEEEECEEEEEECCTTCCCCEEECCC-------CCCEEECCCEEEETTEEEE
T ss_pred EEEEcCCCEecceecCCceEEEEEeeEEEEEEEeCCCcchhccchhhccccccccccccceeEEecCCCEEE
Confidence 356788887766555688999999999888765432 11 1256889999774
No 109
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=87.17 E-value=1.5 Score=20.90 Aligned_cols=45 Identities=11% Similarity=-0.013 Sum_probs=30.5
Q ss_pred eEEecCCCEEEecCCC-CCeEEEEEeceEEEEEeeCCCceEEEEecCCCeE
Q psy5057 3 EKPVEAGDIVIRQGDD-GDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSF 52 (87)
Q Consensus 3 ~~~~~~g~~l~~~g~~-~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~ 52 (87)
...+++|..+-..--. ...++++++|.+.+.. .. ....+.+|+++
T Consensus 32 ~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~----~~-~~~~l~~Gd~~ 77 (105)
T 1v70_A 32 LYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV----GE-EEALLAPGMAA 77 (105)
T ss_dssp EEEECTTCEEEEECCSSCEEEEEEEESCEEEEE----TT-EEEEECTTCEE
T ss_pred EEEECCCCcCCccCCCCCcEEEEEEeCEEEEEE----CC-EEEEeCCCCEE
Confidence 3456778776543323 3569999999998765 22 34678999966
No 110
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=86.69 E-value=2.2 Score=27.31 Aligned_cols=51 Identities=8% Similarity=0.044 Sum_probs=36.9
Q ss_pred eEEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCc----------------------eEEEEecCCCeEe
Q psy5057 3 EKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGED----------------------KLMHAYEDKGSFG 53 (87)
Q Consensus 3 ~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~----------------------~~~~~~~~g~~~g 53 (87)
...+++|-++...-.+++.+++|++|...+.....|.. ..+..+.+||++-
T Consensus 52 r~~l~Pggl~~Ph~~~a~ei~yV~~G~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~d~~qk~~~l~~GDvi~ 124 (476)
T 1fxz_A 52 RCTLNRNALRRPSYTNGPQEIYIQQGKGIFGMIYPGCPSTFEEPQQPQQRGQSSRPQDRHQKIYNFREGDLIA 124 (476)
T ss_dssp EEEECTTEEEEEEEESSCEEEEEEECCEEEEEECTTCCCC------------------CCCCEEEECTTEEEE
T ss_pred EEEEcCCCEecceecCCceEEEEEecEEEEEEEcCCCcchhhccccccccccccccccccceEEEEeCCCEEE
Confidence 45678888876665568899999999988877653221 1367899999774
No 111
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=86.53 E-value=3.1 Score=23.80 Aligned_cols=45 Identities=11% Similarity=0.100 Sum_probs=30.8
Q ss_pred EEecC-CCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEe
Q psy5057 4 KPVEA-GDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFG 53 (87)
Q Consensus 4 ~~~~~-g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g 53 (87)
..+++ |..+-.---+...+++|++|.+.+.. ... ...+.+|+++-
T Consensus 150 ~~~~p~g~~~~~H~H~~~e~~~Vl~G~~~~~i----~~~-~~~l~~Gd~i~ 195 (243)
T 3h7j_A 150 AKIPGNGGEMPFHKHRNEQIGICIGGGYDMTV----EGC-TVEMKFGTAYF 195 (243)
T ss_dssp EEECTTTEEEEEECCSSEEEEEECSSCEEEEE----TTE-EEEECTTCEEE
T ss_pred EEECCCCCcCCCEeCCCcEEEEEEECEEEEEE----CCE-EEEECCCCEEE
Confidence 34667 66655444445789999999998766 332 35689999764
No 112
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=86.52 E-value=1.3 Score=23.44 Aligned_cols=50 Identities=16% Similarity=0.023 Sum_probs=31.4
Q ss_pred eEEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEehh
Q psy5057 3 EKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGEL 55 (87)
Q Consensus 3 ~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g~~ 55 (87)
..++++|..+-.-.-+....++|++|..+. ..|....-..+++|+++=..
T Consensus 48 ~~~~~pG~~~p~H~H~~~ee~~VL~G~~~~---~~g~~~~~~~~~~Gd~~~~p 97 (145)
T 2o1q_A 48 IFDCPAGSSFAAHVHVGPGEYFLTKGKMDV---RGGKAAGGDTAIAPGYGYES 97 (145)
T ss_dssp EEEECTTEEECCEEESSCEEEEEEEEEEEE---TTCGGGTSEEEESSEEEEEC
T ss_pred EEEECCCCCCCccCCCCCEEEEEEEeEEEE---cCCCEecceEeCCCEEEEEC
Confidence 456778877765555567779999999873 12222212456788876544
No 113
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=86.04 E-value=1.1 Score=22.42 Aligned_cols=34 Identities=15% Similarity=0.156 Sum_probs=23.7
Q ss_pred CCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEe
Q psy5057 17 DDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFG 53 (87)
Q Consensus 17 ~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g 53 (87)
...+.+++|++|.+.+... ++. ....+.+||++-
T Consensus 51 ~~~~E~~~Vl~G~~~l~~~--~~~-~~~~l~~Gd~i~ 84 (112)
T 2opk_A 51 SPQDEWVMVVSGSAGIECE--GDT-APRVMRPGDWLH 84 (112)
T ss_dssp CSSEEEEEEEESCEEEEET--TCS-SCEEECTTEEEE
T ss_pred CCccEEEEEEeCeEEEEEC--CEE-EEEEECCCCEEE
Confidence 3557899999999988762 221 115689999764
No 114
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=85.44 E-value=1.5 Score=25.91 Aligned_cols=67 Identities=6% Similarity=-0.025 Sum_probs=38.4
Q ss_pred EEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEehhhhhcCCCceeEEEEecceeEEEEc
Q psy5057 4 KPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMD 79 (87)
Q Consensus 4 ~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~ 79 (87)
.++++|.---........+.+|++|.+.+... +|+ ...+.+|+.+=.. .+.++. ++..++++++.+.
T Consensus 75 v~l~PGg~s~~~~h~~EEfiyVleG~l~l~l~-~g~---~~~L~~Gds~y~p---~~~~H~--~~N~~~Ar~l~V~ 141 (266)
T 4e2q_A 75 AKMKEMSSSGLPPQDIERLIFVVEGAVTLTNT-SSS---SKKLTVDSYAYLP---PNFHHS--LDCVESATLVVFE 141 (266)
T ss_dssp EEECSSEECCCCCTTEEEEEEEEEECEEEEC---CC---CEEECTTEEEEEC---TTCCCE--EEESSCEEEEEEE
T ss_pred EEECcCCcCCCCCCCCeEEEEEEEEEEEEEEC-CCc---EEEEcCCCEEEEC---CCCCEE--EEeCCCEEEEEEE
Confidence 45566554212233467999999999987651 122 3578899866322 233333 2234677777664
No 115
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=85.41 E-value=3.6 Score=23.52 Aligned_cols=43 Identities=16% Similarity=0.020 Sum_probs=30.6
Q ss_pred EEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCe
Q psy5057 4 KPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGS 51 (87)
Q Consensus 4 ~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~ 51 (87)
..+++|..+-.---+...+.+|++|.+.+.. ... ...+.+|+.
T Consensus 39 ~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~----~~~-~~~l~~Gd~ 81 (243)
T 3h7j_A 39 SYVPPHTNVEPHQHKEVQIGMVVSGELMMTV----GDV-TRKMTALES 81 (243)
T ss_dssp EEECTTEEEEEECCSSEEEEEEEESEEEEEE----TTE-EEEEETTTC
T ss_pred EEECCCCccCCEECCCcEEEEEEEeEEEEEE----CCE-EEEECCCCE
Confidence 3467777766554556789999999998776 222 367889883
No 116
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=85.31 E-value=2.4 Score=21.36 Aligned_cols=44 Identities=16% Similarity=0.120 Sum_probs=26.2
Q ss_pred EEecCCCEEE--ecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeE
Q psy5057 4 KPVEAGDIVI--RQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSF 52 (87)
Q Consensus 4 ~~~~~g~~l~--~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~ 52 (87)
..+++|..+- ..-+....+|++++|.+.... .. ....+.+|+++
T Consensus 31 ~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i----~~-~~~~l~~Gd~i 76 (125)
T 3cew_A 31 NHLPAGAGVPFVHSHKQNEEIYGILSGKGFITI----DG-EKIELQAGDWL 76 (125)
T ss_dssp EEECTTCBCSSEEEESSEEEEEEEEEEEEEEEE----TT-EEEEEETTEEE
T ss_pred EEECCCCCCCCCccCCCceEEEEEEeCEEEEEE----CC-EEEEeCCCCEE
Confidence 3455655431 222223456779999988765 22 23678899866
No 117
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=84.58 E-value=2.9 Score=21.77 Aligned_cols=43 Identities=7% Similarity=-0.126 Sum_probs=28.3
Q ss_pred EEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEe
Q psy5057 4 KPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFG 53 (87)
Q Consensus 4 ~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g 53 (87)
..+++|..-+. ...+.+++|++|.+.+.. .. ....+.+||.+-
T Consensus 62 ~~~~pG~~~~h--~~~~E~~~VLeG~~~l~~----~g-~~~~l~~GD~i~ 104 (133)
T 2pyt_A 62 MQWDNAFFPWT--LNYDEIDMVLEGELHVRH----EG-ETMIAKAGDVMF 104 (133)
T ss_dssp EEEEEEEEEEE--CSSEEEEEEEEEEEEEEE----TT-EEEEEETTCEEE
T ss_pred EEECCCCcccc--CCCCEEEEEEECEEEEEE----CC-EEEEECCCcEEE
Confidence 34566632122 235789999999998876 32 234799999764
No 118
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=84.42 E-value=4.2 Score=23.39 Aligned_cols=46 Identities=7% Similarity=-0.094 Sum_probs=31.7
Q ss_pred eEEecCCCEEEe-cCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEe
Q psy5057 3 EKPVEAGDIVIR-QGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFG 53 (87)
Q Consensus 3 ~~~~~~g~~l~~-~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g 53 (87)
...+++|..+-. .--...+.++|++|.+.... +. ....+.+||++-
T Consensus 169 ~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~----~~-~~~~l~~GD~~~ 215 (246)
T 1sfn_A 169 TMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL----EE-NYYPVTAGDIIW 215 (246)
T ss_dssp EEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE----TT-EEEEEETTCEEE
T ss_pred EEEECCCCccCcccCCCceEEEEEEECEEEEEE----CC-EEEEcCCCCEEE
Confidence 456677776553 33445789999999988766 33 235789999663
No 119
>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*
Probab=84.32 E-value=4.8 Score=25.20 Aligned_cols=50 Identities=10% Similarity=0.126 Sum_probs=35.7
Q ss_pred EEecCCCEEEec-CCCCCeEEEEEeceEEEEEeeC-------CCceEEEEecCCCeEe
Q psy5057 4 KPVEAGDIVIRQ-GDDGDFFYVIESGRYEASVEID-------GEDKLMHAYEDKGSFG 53 (87)
Q Consensus 4 ~~~~~g~~l~~~-g~~~~~~~~i~~G~v~~~~~~~-------~~~~~~~~~~~g~~~g 53 (87)
..+.+|-+...- ...+..+++|++|..++..... +.......+.+||+|=
T Consensus 244 v~l~pG~~~~PH~h~~A~Ei~yVl~G~g~v~vv~~~~~~~~~g~~~~~~~l~~GDV~v 301 (397)
T 2phl_A 244 IEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNKETLEYESYRAELSKDDVFV 301 (397)
T ss_dssp EEECTTEEEEEEEESSCEEEEEEEESEEEEEEEEECC--CCSCEEEEEEEEETTCEEE
T ss_pred EEEcCCcEeeeeEcCCCCEEEEEEeeeEEEEEEeccccccCCCceEEEEEecCCCEEE
Confidence 455666655533 2356899999999988877653 4456678899999774
No 120
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=84.02 E-value=4.4 Score=23.31 Aligned_cols=63 Identities=16% Similarity=0.110 Sum_probs=37.8
Q ss_pred EEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEehhhhhcCCCceeEEEEecceeEEEE
Q psy5057 4 KPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAM 78 (87)
Q Consensus 4 ~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~ 78 (87)
..+++|...-..- .+.+.+|++|.+.+.. +++ ...+.+|+++-. -.+.++..... ++++++.+
T Consensus 55 ~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~~--~~~---~~~l~~Gd~~~~---p~~~~H~~~n~--~~~~~l~v 117 (246)
T 1sfn_A 55 AEMPAGAQATESV--YQRFAFVLSGEVDVAV--GGE---TRTLREYDYVYL---PAGEKHMLTAK--TDARVSVF 117 (246)
T ss_dssp EEECTTCEEECCS--SEEEEEEEEEEEEEEC--SSC---EEEECTTEEEEE---CTTCCCEEEEE--EEEEEEEE
T ss_pred EEECCCCcCCCCc--eeEEEEEEECEEEEEE--CCE---EEEECCCCEEEE---CCCCCEEEEeC--CCEEEEEE
Confidence 4556766554432 6788899999998775 222 367899996632 23344443222 55655544
No 121
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*
Probab=83.94 E-value=3.8 Score=22.60 Aligned_cols=34 Identities=15% Similarity=0.048 Sum_probs=25.3
Q ss_pred CCeEEEEEeceEEEEEeeCCCceEEEEecCCCeE
Q psy5057 19 GDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSF 52 (87)
Q Consensus 19 ~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~ 52 (87)
...+++|++|.................+.+||++
T Consensus 96 ~~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~v 129 (190)
T 1x82_A 96 RAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVV 129 (190)
T ss_dssp CCEEEEEEESCEEEEEECTTCCEEEEEECTTCEE
T ss_pred CCEEEEEEcCEEEEEEcCcCCcEEEEEECCCcEE
Confidence 3699999999998876543223456789999966
No 122
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=82.40 E-value=4 Score=24.96 Aligned_cols=47 Identities=11% Similarity=0.114 Sum_probs=30.9
Q ss_pred eEEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEe
Q psy5057 3 EKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFG 53 (87)
Q Consensus 3 ~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g 53 (87)
...+++|...-.---....+++|++|....... +| ....+.+||++=
T Consensus 104 ~~~l~PG~~~~~H~H~~~e~~yVl~G~g~~t~v-~g---~~~~l~~GD~~~ 150 (354)
T 2d40_A 104 LQLIMPGEVAPSHRHNQSALRFIVEGKGAFTAV-DG---ERTPMNEGDFIL 150 (354)
T ss_dssp EEEECTTCEEEEEEESSCEEEEEEECSSCEEEE-TT---EEEECCTTCEEE
T ss_pred EEEECCCCCcCCeecCcceEEEEEEEEEEEEEE-CC---EEEEEcCCCEEE
Confidence 345677877643333457999999999765332 22 246789999774
No 123
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=82.25 E-value=4.5 Score=23.79 Aligned_cols=46 Identities=9% Similarity=-0.044 Sum_probs=32.4
Q ss_pred eeEEecCCCEEEe-cCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeE
Q psy5057 2 FEKPVEAGDIVIR-QGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSF 52 (87)
Q Consensus 2 ~~~~~~~g~~l~~-~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~ 52 (87)
....+++|..+-. .-....+.++|++|...... +. ....+.+||++
T Consensus 194 ~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~----~~-~~~~v~~GD~~ 240 (278)
T 1sq4_A 194 NIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRL----NQ-DWVEVEAGDFM 240 (278)
T ss_dssp EEEEECSSSEESCCCCCSEEEEEEEEECEEEEEE----TT-EEEEEETTCEE
T ss_pred EEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEE----CC-EEEEeCCCCEE
Confidence 3566788887764 33445688999999987665 32 44778899965
No 124
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=82.07 E-value=4.5 Score=22.03 Aligned_cols=44 Identities=5% Similarity=-0.019 Sum_probs=30.1
Q ss_pred EEecCCCEEEe--cCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeE
Q psy5057 4 KPVEAGDIVIR--QGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSF 52 (87)
Q Consensus 4 ~~~~~g~~l~~--~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~ 52 (87)
..+++|..... -......+++|++|.+.+.. .. ....+.+||++
T Consensus 109 ~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~----~~-~~~~l~~GD~i 154 (192)
T 1y9q_A 109 ITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFF----DE-QWHELQQGEHI 154 (192)
T ss_dssp EEECTTCEEEECCCSTTCEEEEEEEESCEEEEE----TT-EEEEECTTCEE
T ss_pred EEECCCCCccCCCCCCCCEEEEEEEEeEEEEEE----CC-EEEEeCCCCEE
Confidence 45677776552 22344789999999998765 22 33578999966
No 125
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=81.53 E-value=2.5 Score=23.57 Aligned_cols=62 Identities=16% Similarity=0.060 Sum_probs=40.2
Q ss_pred eEEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEehhhhhcCCCceeEEEE--ecceeEEEE
Q psy5057 3 EKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYNMPRAATIKA--TSTGSLWAM 78 (87)
Q Consensus 3 ~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a--~~~~~~~~~ 78 (87)
..++++|..+-.-.-....+.+|++|..+ + .. ..+.+|+++=..+- ..+ ...+ .++|.++..
T Consensus 129 l~~~~pG~~~p~H~H~g~E~~~VL~G~f~-----d-e~---~~~~~Gd~~~~p~g---~~H--~p~a~~~~gc~~l~~ 192 (195)
T 2q1z_B 129 LLWIPGGQAVPDHGHRGLELTLVLQGAFR-----D-ET---DRFGAGDIEIADQE---LEH--TPVAERGLDCICLAA 192 (195)
T ss_dssp EEEECTTCBCCCCCCSSCEEEEEEESEEE-----C-SS---SEEETTCEEEECSS---CCC--CCEECSSSCEEEEEE
T ss_pred EEEECCCCCCCCcCCCCeEEEEEEEEEEE-----C-Cc---EEECCCeEEEeCcC---Ccc--CCEeCCCCCEEEEEE
Confidence 45678888887777777899999999865 1 11 35889997743322 222 2334 566776654
No 126
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=81.49 E-value=7 Score=23.88 Aligned_cols=71 Identities=10% Similarity=0.121 Sum_probs=42.5
Q ss_pred EEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEehhhhhcCCCceeEEEEecceeEEEEchhhh
Q psy5057 4 KPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKTF 83 (87)
Q Consensus 4 ~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 83 (87)
..+++|...-.--.+...+|+|++|..++.. +. ....+.+||+|-..+. ..+ .+.+.+++.++++.-..+
T Consensus 273 ~~l~pG~~~~~H~h~~~ev~~v~~G~g~~~v----~~-~~~~~~~GD~~~vP~~---~~H--~~~n~e~~~l~~~~d~p~ 342 (354)
T 2d40_A 273 QLLPKGFASRVARTTDSTIYHVVEGSGQVII----GN-ETFSFSAKDIFVVPTW---HGV--SFQTTQDSVLFSFSDRPV 342 (354)
T ss_dssp EEECTTCBCCCBEESSCEEEEEEEEEEEEEE----TT-EEEEEETTCEEEECTT---CCE--EEEEEEEEEEEEEESHHH
T ss_pred EEECCCCCCCceecCCcEEEEEEeCeEEEEE----CC-EEEEEcCCCEEEECCC---CeE--EEEeCCCEEEEEEcCHHH
Confidence 3445555443333345689999999988776 22 4478899998754332 222 233346777777765544
Q ss_pred h
Q psy5057 84 Y 84 (87)
Q Consensus 84 ~ 84 (87)
.
T Consensus 343 ~ 343 (354)
T 2d40_A 343 Q 343 (354)
T ss_dssp H
T ss_pred H
Confidence 3
No 127
>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}
Probab=81.15 E-value=4.2 Score=23.65 Aligned_cols=31 Identities=16% Similarity=0.089 Sum_probs=22.9
Q ss_pred CCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEe
Q psy5057 19 GDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFG 53 (87)
Q Consensus 19 ~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g 53 (87)
.+.+.+|++|.+.+... +|+ ...+++||.+-
T Consensus 186 ~~E~~~ILeG~v~lt~~-~G~---~~~~~aGD~~~ 216 (238)
T 3myx_A 186 IHELMNLIEGRVVLSLE-NGS---SLTVNTGDTVF 216 (238)
T ss_dssp SCEEEEEEECCEEEEET-TSC---EEEECTTCEEE
T ss_pred CCEEEEEEEeEEEEEeC-CCC---EEEECCCCEEE
Confidence 46899999999988752 333 36789999664
No 128
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=80.99 E-value=2 Score=26.84 Aligned_cols=47 Identities=13% Similarity=0.083 Sum_probs=30.1
Q ss_pred eEEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEe
Q psy5057 3 EKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFG 53 (87)
Q Consensus 3 ~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g 53 (87)
...+++|+.+-.---....+|+|++|.-..+.. +|+ ...+++||++-
T Consensus 127 ~~~l~PG~~~~~HrH~~~ev~~IleG~G~~t~v-~G~---~~~~~~GD~i~ 173 (394)
T 3bu7_A 127 IQTMKAGERAGAHRHAASALRFIMEGSGAYTIV-DGH---KVELGANDFVL 173 (394)
T ss_dssp EEEECTTCBCCCEEESSCEEEEEEECSCEEEEE-TTE---EEEECTTCEEE
T ss_pred EEEECCCCCcCCccCCcceEEEEEEeeEEEEEE-CCE---EEEEcCCCEEE
Confidence 455677776654443456899999998644232 333 35678999763
No 129
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=80.98 E-value=4.4 Score=21.18 Aligned_cols=49 Identities=14% Similarity=0.110 Sum_probs=29.1
Q ss_pred EEecCCCEEEec-CCCCCeEEEEEeceEEEEEeeC-CCceEEEEecCCCeE
Q psy5057 4 KPVEAGDIVIRQ-GDDGDFFYVIESGRYEASVEID-GEDKLMHAYEDKGSF 52 (87)
Q Consensus 4 ~~~~~g~~l~~~-g~~~~~~~~i~~G~v~~~~~~~-~~~~~~~~~~~g~~~ 52 (87)
..+++|..+-.. -.....+++|++|.+.+..... +.......+.+|+++
T Consensus 48 ~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~~~~~~~~~l~~Gd~i 98 (148)
T 2oa2_A 48 MSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMGHRQDNLHFQEEVFDDYAI 98 (148)
T ss_dssp EEECTTCBCCCBCCTTCEEEEEEEESEEEEEEESBTTBCCEEEEEETTCEE
T ss_pred EEECCCCccCceECCCCcEEEEEEeCEEEEEECCccccceeeEEECCCCEE
Confidence 345666544322 2234589999999998776321 111123678899865
No 130
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*
Probab=80.98 E-value=2.7 Score=25.60 Aligned_cols=64 Identities=8% Similarity=-0.037 Sum_probs=40.4
Q ss_pred CCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEehhhhhcCCCceeEEEEecc-eeEEEEch
Q psy5057 8 AGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYNMPRAATIKATST-GSLWAMDR 80 (87)
Q Consensus 8 ~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~-~~~~~~~~ 80 (87)
+|+.+-.-..+.+.+++|++|.+++.. .......+++|+.+=. -.+. ...+.+.++ ..++.+..
T Consensus 261 ~g~~~~~h~~~~~~~~~vleG~~~i~i----~g~~~~~l~~Gd~~~i---Pag~--~h~~~~~~~~~~~l~~~~ 325 (350)
T 1juh_A 261 STVTVPTWSFPGACAFQVQEGRVVVQI----GDYAATELGSGDVAFI---PGGV--EFKYYSEAYFSKVLFVSS 325 (350)
T ss_dssp TTSCCCCBCCSSCEEEEEEESCEEEEE----TTSCCEEECTTCEEEE---CTTC--CEEEEESSSSEEEEEEEE
T ss_pred CCCCCCcccCCCcEEEEEEeeEEEEEE----CCeEEEEeCCCCEEEE---CCCC--CEEEEecCCeEEEEEEec
Confidence 355555556678999999999999776 2212468899996631 1223 344555544 56665554
No 131
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}
Probab=80.73 E-value=4.1 Score=20.70 Aligned_cols=31 Identities=26% Similarity=0.129 Sum_probs=22.8
Q ss_pred CCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEe
Q psy5057 19 GDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFG 53 (87)
Q Consensus 19 ~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g 53 (87)
...+++|++|.+.+.. .......+.+|+++=
T Consensus 64 ~~E~~~vl~G~~~~~~----~~~~~~~l~~Gd~~~ 94 (134)
T 2o8q_A 64 GFQLFYVLRGWVEFEY----EDIGAVMLEAGGSAF 94 (134)
T ss_dssp SCEEEEEEESEEEEEE----TTTEEEEEETTCEEE
T ss_pred CcEEEEEEeCEEEEEE----CCcEEEEecCCCEEE
Confidence 3789999999998766 221356789999663
No 132
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=80.29 E-value=7.1 Score=23.16 Aligned_cols=45 Identities=11% Similarity=0.000 Sum_probs=30.4
Q ss_pred EEecCCCEEE-ecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEe
Q psy5057 4 KPVEAGDIVI-RQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFG 53 (87)
Q Consensus 4 ~~~~~g~~l~-~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g 53 (87)
...++|...- ........+++|++|.+.+.. .. ....+.+||++=
T Consensus 51 ~~~~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~----~~-~~~~l~~Gd~~~ 96 (337)
T 1y3t_A 51 LSGGKGDAFPLHVHKDTHEGILVLDGKLELTL----DG-ERYLLISGDYAN 96 (337)
T ss_dssp EEECTTCEEEEEECTTCCEEEEEEESCEEEEE----TT-EEEEECTTCEEE
T ss_pred EEeCCCCCCCceeCCCceEEEEEEECEEEEEE----CC-EEEEECCCCEEE
Confidence 4567776653 223337899999999998775 22 236789999663
No 133
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=80.21 E-value=9.5 Score=24.61 Aligned_cols=34 Identities=3% Similarity=0.094 Sum_probs=26.9
Q ss_pred eEEecCCCEEEecCCCCCeEEEEEeceEEEEEee
Q psy5057 3 EKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEI 36 (87)
Q Consensus 3 ~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~ 36 (87)
...+++|.++...-.+.+.+++|++|...+....
T Consensus 49 r~~i~pggl~~Ph~~~~~~i~yV~~G~g~vg~v~ 82 (493)
T 2d5f_A 49 KRTLNRNGLHLPSYSPYPQMIIVVQGKGAIGFAF 82 (493)
T ss_dssp EEEECTTEEEEEEECSSCEEEEEEECEEEEEECC
T ss_pred EEEeCCCcEeCceecCCCeEEEEEeCEEEEEEEe
Confidence 4567888888766666789999999998887664
No 134
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*
Probab=78.79 E-value=8.7 Score=23.36 Aligned_cols=35 Identities=6% Similarity=-0.012 Sum_probs=25.5
Q ss_pred CCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEe
Q psy5057 19 GDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFG 53 (87)
Q Consensus 19 ~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g 53 (87)
...+++|++|.+.+.....+.......+.+||++-
T Consensus 71 ~~E~~~Vl~G~~~~~v~~~~g~~~~~~L~~GD~v~ 105 (350)
T 1juh_A 71 HYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYGS 105 (350)
T ss_dssp CEEEEEEEESEEEEEEEETTSCCEEEEEETTCEEE
T ss_pred ceEEEEEEEEEEEEEECCcCCceEEEEECCCCEEE
Confidence 46888999999998775422344567889999663
No 135
>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}
Probab=78.67 E-value=7.1 Score=25.25 Aligned_cols=52 Identities=6% Similarity=0.066 Sum_probs=36.8
Q ss_pred eEEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCC-Cc--------------------eEEEEecCCCeEeh
Q psy5057 3 EKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDG-ED--------------------KLMHAYEDKGSFGE 54 (87)
Q Consensus 3 ~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~-~~--------------------~~~~~~~~g~~~g~ 54 (87)
...+++|-++...-..++.+.+|++|...+-....+ .+ ..+..+.+||+|-.
T Consensus 50 R~~i~pggl~lPh~~~A~ei~~V~qG~g~~G~v~p~~~e~f~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~vi 122 (496)
T 3ksc_A 50 RATLQRNALRRPYYSNAPQEIFIQQGNGYFGMVFPGCPETFEEPQESEQGEGRRYRDRHQKVNRFREGDIIAV 122 (496)
T ss_dssp EEEECTTEEEEEEEESSCEEEEEEECCEEEEEECTTCCCC---------------CCCCCCEEEECTTEEEEE
T ss_pred EEEecCCCEeCceEcCCCEEEEEEeCceEEEEEeCCCCccchhhhhcccccccccccchheeeccCCCCEEEE
Confidence 456778887776655789999999999877665532 11 12458899997743
No 136
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=77.78 E-value=4.5 Score=19.52 Aligned_cols=65 Identities=11% Similarity=0.061 Sum_probs=36.3
Q ss_pred EEecCCCEEEecCCCC-CeE-EEEEeceEEEEEeeCCCceEEEEecCCCeEehhhhhcCCCceeEEEEecceeEEE
Q psy5057 4 KPVEAGDIVIRQGDDG-DFF-YVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYNMPRAATIKATSTGSLWA 77 (87)
Q Consensus 4 ~~~~~g~~l~~~g~~~-~~~-~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~ 77 (87)
..+++|..+-..--.. ..+ +++++|.+.+.. .......+.+|+++-.. .+.++ .+.+..++.++.
T Consensus 38 ~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~----~~~~~~~l~~Gd~~~ip---~~~~H--~~~~~~~~~~l~ 104 (110)
T 2q30_A 38 FTFKAGQELPVHSHNIEGELNIVVLEGEGEFVG----DGDAVIPAPRGAVLVAP---ISTPH--GVRAVTDMKVLV 104 (110)
T ss_dssp EEECTTCEEEEECCSSSCEEEEEEEESCEEEEC----GGGCEEEECTTEEEEEE---TTSCE--EEEESSSEEEEE
T ss_pred EEECCCCcCCcccCCCCccEEEEEEeCEEEEEe----CCCEEEEECCCCEEEeC---CCCcE--EEEEcCCcEEEE
Confidence 4567787765433232 355 799999987664 21124678899865322 22232 344555555443
No 137
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=77.00 E-value=4.8 Score=20.56 Aligned_cols=31 Identities=6% Similarity=-0.032 Sum_probs=20.6
Q ss_pred CCeEEEEEeceEEEEEeeCCCceEEEEecCCCeE
Q psy5057 19 GDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSF 52 (87)
Q Consensus 19 ~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~ 52 (87)
...+.+|++|.+.+....++ ....+.+|+++
T Consensus 59 ~~e~~~vl~G~~~~~~~~~~---~~~~l~~Gd~~ 89 (145)
T 3ht1_A 59 WEHEIYVLEGSMGLVLPDQG---RTEEVGPGEAI 89 (145)
T ss_dssp SCEEEEEEEECEEEEEGGGT---EEEEECTTCEE
T ss_pred CceEEEEEEeEEEEEEeECC---EEEEECCCCEE
Confidence 34556799999987722232 34678899865
No 138
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=76.94 E-value=8.5 Score=22.21 Aligned_cols=30 Identities=27% Similarity=0.294 Sum_probs=22.3
Q ss_pred CCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEe
Q psy5057 19 GDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFG 53 (87)
Q Consensus 19 ~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g 53 (87)
.+.+.+|++|.+.+.. ... ...+.+||.+-
T Consensus 81 ~ee~~~Vl~G~l~~~~----~~~-~~~L~~Gd~~~ 110 (261)
T 1rc6_A 81 IETFLYVISGNITAKA----EGK-TFALSEGGYLY 110 (261)
T ss_dssp EEEEEEEEESEEEEEE----TTE-EEEEETTEEEE
T ss_pred ceEEEEEEEeEEEEEE----CCE-EEEECCCCEEE
Confidence 3578999999998876 222 46789999664
No 139
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=75.35 E-value=9.8 Score=22.16 Aligned_cols=45 Identities=11% Similarity=-0.046 Sum_probs=30.1
Q ss_pred EEecCCCEEEe-cCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEe
Q psy5057 4 KPVEAGDIVIR-QGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFG 53 (87)
Q Consensus 4 ~~~~~g~~l~~-~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g 53 (87)
..+++|..+-. .--....+++|++|...+.. .. ....+.+||++=
T Consensus 187 ~~l~pg~~~~~~H~H~~~E~~yVl~G~~~~~i----~~-~~~~l~~GD~i~ 232 (274)
T 1sef_A 187 LSFEPGASHAYIETHVQEHGAYLISGQGMYNL----DN-EWYPVEKGDYIF 232 (274)
T ss_dssp EEECTTCBCSSCBCCSCCEEEEEEECEEEEEE----TT-EEEEEETTCEEE
T ss_pred EEECCCCccCcceeccCeEEEEEEeCEEEEEE----CC-EEEEECCCCEEE
Confidence 45667765532 22245788999999998776 32 246789999663
No 140
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=74.77 E-value=10 Score=24.65 Aligned_cols=34 Identities=9% Similarity=-0.064 Sum_probs=27.3
Q ss_pred eEEecCCCEEEecCCCCCeEEEEEeceEEEEEee
Q psy5057 3 EKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEI 36 (87)
Q Consensus 3 ~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~ 36 (87)
...+++|-++...-.+++.+++|++|...+....
T Consensus 52 r~~i~p~gl~lPh~~~a~~~~yV~~G~g~~g~v~ 85 (510)
T 3c3v_A 52 RLVLRRNALRRPFYSNAPQEIFIQQGRGYFGLIF 85 (510)
T ss_dssp EEEECTTEEEEEEECSSCEEEEEEECCEEEEEEC
T ss_pred EEEECCCCCccceecCCCeEEEEEeCEEEEEEEe
Confidence 4567888887777677899999999998877665
No 141
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=74.11 E-value=8.3 Score=20.74 Aligned_cols=30 Identities=13% Similarity=0.130 Sum_probs=22.8
Q ss_pred CCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeE
Q psy5057 18 DGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSF 52 (87)
Q Consensus 18 ~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~ 52 (87)
..+.+++|++|.+.+.. +|+ ...+.+||.+
T Consensus 83 ~~eE~~yVLeG~~~l~i--~g~---~~~l~~GD~i 112 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIII--DGR---KVSASSGELI 112 (151)
T ss_dssp SSEEEEEEEEEEEEEEE--TTE---EEEEETTCEE
T ss_pred CCcEEEEEEEeEEEEEE--CCE---EEEEcCCCEE
Confidence 35688999999998875 332 4678999966
No 142
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=73.50 E-value=6.9 Score=19.57 Aligned_cols=44 Identities=9% Similarity=0.060 Sum_probs=27.4
Q ss_pred EecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEe
Q psy5057 5 PVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFG 53 (87)
Q Consensus 5 ~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g 53 (87)
.+++|...-.---....++++++|...... +. ....+.+|+++=
T Consensus 40 ~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i----~~-~~~~l~~Gd~~~ 83 (128)
T 4i4a_A 40 IVRPETKSFRHSHNEYELFIVIQGNAIIRI----ND-EDFPVTKGDLII 83 (128)
T ss_dssp EECTTEECCCBCCSSEEEEEEEESEEEEEE----TT-EEEEEETTCEEE
T ss_pred EECCCCccCCEecCCeEEEEEEeCEEEEEE----CC-EEEEECCCcEEE
Confidence 344444322222245789999999988776 22 246789998663
No 143
>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}
Probab=72.73 E-value=14 Score=23.69 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=25.4
Q ss_pred EEecCCCEEEecCCCCCeEEEEEeceEEEEEee
Q psy5057 4 KPVEAGDIVIRQGDDGDFFYVIESGRYEASVEI 36 (87)
Q Consensus 4 ~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~ 36 (87)
..+++|-.+...-..++.+.+|++|...+-...
T Consensus 55 ~~i~P~gl~~Ph~h~a~ei~yV~qG~g~~g~v~ 87 (465)
T 3qac_A 55 RTIEPHGLLLPSFTSAPELIYIEQGNGITGMMI 87 (465)
T ss_dssp EEECTTEEEEEEEESSCEEEEEEECEEEEEEEC
T ss_pred EEEcCCcCcccEEcCCCEEEEEEECcEEEEEec
Confidence 456777777766568899999999998776654
No 144
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=72.68 E-value=8.1 Score=23.98 Aligned_cols=47 Identities=6% Similarity=0.028 Sum_probs=31.1
Q ss_pred eEEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEe
Q psy5057 3 EKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFG 53 (87)
Q Consensus 3 ~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g 53 (87)
...+++|+..-.---....+|+|++|.-... ..+|. ...+.+||++=
T Consensus 107 ~~~l~PG~~~~~HrH~~~ev~~VleG~G~~~-~vdG~---~~~~~~GD~v~ 153 (368)
T 3nw4_A 107 IQYLGPRETAPEHRHSQNAFRFVVEGEGVWT-VVNGD---PVRMSRGDLLL 153 (368)
T ss_dssp EEEECTTCEEEEEEESSCEEEECSSCEEEEE-EETTE---EEEEETTCEEE
T ss_pred EEEECCCCccCceecccceEEEEEecceEEE-EECCE---EEEEeCCCEEE
Confidence 3567888877655545679999999986322 22333 45678888663
No 145
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=72.58 E-value=6.3 Score=18.67 Aligned_cols=51 Identities=6% Similarity=0.065 Sum_probs=31.6
Q ss_pred CCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEehhhhhcCCCceeEEEEecceeEEEEc
Q psy5057 19 GDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMD 79 (87)
Q Consensus 19 ~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~ 79 (87)
...++++++|.+.+.. ++ ....+.+|+++-. -.+.++. +.+..++.++.++
T Consensus 50 ~~e~~~v~~G~~~~~~--~~---~~~~l~~Gd~~~i---p~~~~H~--~~~~~~~~~l~i~ 100 (102)
T 3d82_A 50 TDEVFIVMEGTLQIAF--RD---QNITLQAGEMYVI---PKGVEHK--PMAKEECKIMIIE 100 (102)
T ss_dssp CCEEEEEEESEEEEEC--SS---CEEEEETTEEEEE---CTTCCBE--EEEEEEEEEEEEE
T ss_pred CcEEEEEEeCEEEEEE--CC---EEEEEcCCCEEEE---CCCCeEe--eEcCCCCEEEEEE
Confidence 3789999999987654 22 2456789986632 2233333 3334677777665
No 146
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=71.68 E-value=16 Score=22.95 Aligned_cols=51 Identities=10% Similarity=0.211 Sum_probs=33.7
Q ss_pred eEEecCCCEEEec-CCCCCeEEEEEeceEEEEEee-CCC-------------ceEEEEecCCCeEe
Q psy5057 3 EKPVEAGDIVIRQ-GDDGDFFYVIESGRYEASVEI-DGE-------------DKLMHAYEDKGSFG 53 (87)
Q Consensus 3 ~~~~~~g~~l~~~-g~~~~~~~~i~~G~v~~~~~~-~~~-------------~~~~~~~~~g~~~g 53 (87)
...+++|-+...- ...+..+++|++|..++.... ++. ......+.+||+|=
T Consensus 253 ~~~l~~g~~~~pH~h~~A~Ei~~V~~G~~~v~~v~~~g~~~~~~~~~~~~~~~~~~~~l~~Gdv~v 318 (416)
T 1uij_A 253 SVDINEGALLLPHFNSKAIVILVINEGDANIELVGIKEQQQKQKQEEEPLEVQRYRAELSEDDVFV 318 (416)
T ss_dssp EEEECTTEEEEEEEESSCEEEEEEEESEEEEEEEEEC------------CCEEEEEEEEETTCEEE
T ss_pred EEEEcCCcEecceEcCCCcEEEEEEeeEEEEEEEcCCCccccccccccccceEEEEEEecCCcEEE
Confidence 3456666655543 245689999999998887765 331 13345899999773
No 147
>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6
Probab=66.34 E-value=15 Score=20.59 Aligned_cols=35 Identities=11% Similarity=-0.025 Sum_probs=23.6
Q ss_pred CCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEe
Q psy5057 19 GDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFG 53 (87)
Q Consensus 19 ~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g 53 (87)
...+++|++|.........+.......+.+|+++=
T Consensus 104 ~~Ei~yVleG~G~f~i~d~~d~~~~i~v~~GDlIi 138 (191)
T 1vr3_A 104 DEEIRYILEGSGYFDVRDKEDKWIRISMEKGDMIT 138 (191)
T ss_dssp SCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEE
T ss_pred cceEEEEEeceEEEEECCCCCeEEEEEECCCCEEE
Confidence 36899999999876654322233345788999763
No 148
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=65.10 E-value=23 Score=22.38 Aligned_cols=51 Identities=10% Similarity=0.197 Sum_probs=33.8
Q ss_pred eEEecCCCEEEec-CCCCCeEEEEEeceEEEEEee-CC----------Cc--eEEEEecCCCeEe
Q psy5057 3 EKPVEAGDIVIRQ-GDDGDFFYVIESGRYEASVEI-DG----------ED--KLMHAYEDKGSFG 53 (87)
Q Consensus 3 ~~~~~~g~~l~~~-g~~~~~~~~i~~G~v~~~~~~-~~----------~~--~~~~~~~~g~~~g 53 (87)
...+++|-+...- ...+..+++|++|..++.... +| +. .....+.+||+|=
T Consensus 270 ~v~l~pG~m~~pH~hp~A~Ei~~V~~G~~~v~vv~~~g~~~~~~~~~~~~~r~~~~~l~~Gdv~v 334 (434)
T 2ea7_A 270 SVDMKEGALLLPHYSSKAIVIMVINEGEAKIELVGLSDQQQQKQQEESLEVQRYRAELSEDDVFV 334 (434)
T ss_dssp EEEECTTEEEEEEEESSCEEEEEEEESCEEEEEEEEEECCCCTTSCCCEEEEEEEEEECTTCEEE
T ss_pred EEEEcCCeeeccEEcCCCCEEEEEEeeEEEEEEEecCccccccccccCcceEEEEEEecCCcEEE
Confidence 3456666655433 245689999999998887765 22 11 3345899999773
No 149
>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}
Probab=64.84 E-value=17 Score=20.74 Aligned_cols=60 Identities=12% Similarity=0.205 Sum_probs=37.1
Q ss_pred eEEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEehhhhhcCCCceeEEEE-ecceeEEE
Q psy5057 3 EKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYNMPRAATIKA-TSTGSLWA 77 (87)
Q Consensus 3 ~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a-~~~~~~~~ 77 (87)
..+.++|+.+......... .+|++|.+.-- . ..+.+|+|+-... .+..+..| .+.|.+|.
T Consensus 150 l~r~~~G~~~~~~~hgG~E-ilVL~G~~~d~-----~----~~~~~GsWlR~P~-----gs~h~~~ag~~g~~i~~ 210 (223)
T 3o14_A 150 HRKLEPGANLTSEAAGGIE-VLVLDGDVTVN-----D----EVLGRNAWLRLPE-----GEALSATAGARGAKIWM 210 (223)
T ss_dssp EEEECTTCEEEECCSSCEE-EEEEEEEEEET-----T----EEECTTEEEEECT-----TCCEEEEEEEEEEEEEE
T ss_pred EEEECCCCccCCCCCCcEE-EEEEEeEEEEC-----C----ceECCCeEEEeCC-----CCccCcEECCCCeEEEE
Confidence 3567889988877663344 49999997511 1 5778888864321 12344455 56676664
No 150
>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A
Probab=64.26 E-value=24 Score=22.26 Aligned_cols=51 Identities=10% Similarity=0.153 Sum_probs=34.2
Q ss_pred EEecCCCEEEecC-CCCCeEEEEEeceEEEEEee-CCC------------------------ceEEEEecCCCeEeh
Q psy5057 4 KPVEAGDIVIRQG-DDGDFFYVIESGRYEASVEI-DGE------------------------DKLMHAYEDKGSFGE 54 (87)
Q Consensus 4 ~~~~~g~~l~~~g-~~~~~~~~i~~G~v~~~~~~-~~~------------------------~~~~~~~~~g~~~g~ 54 (87)
..+.+|-+...-= ..+..+.+|++|...+.... ++. ......+.+||+|-.
T Consensus 268 ~~l~pgg~~~PH~~p~A~ei~yV~~G~g~v~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vv 344 (418)
T 3s7i_A 268 VEIKEGALMLPHFNSKAMVIVVVNKGTGNLELVAVRKEQQQRGRREEEEDEDEEEEGSNREVRRYTARLKEGDVFIM 344 (418)
T ss_dssp EEECTTEEEEEEEESSCEEEEEEEECCEEEEEEEEEEC-------------------CCEEEEEEEEEECTTCEEEE
T ss_pred EEecCCceeCceecCCCCEEEEEEeCeEEEEEEeCCCccccccccccccccccccccccccceEEEeeeCCCCEEEE
Confidence 4556666555443 35688999999998876664 221 234688999998743
No 151
>2hql_A Hypothetical protein Mg376 homolog; structural genomics, conserved hypothetical protein, GI:1673959, MPN554, OB fold; 2.00A {Mycoplasma pneumoniae}
Probab=63.77 E-value=11 Score=18.46 Aligned_cols=31 Identities=23% Similarity=0.236 Sum_probs=20.1
Q ss_pred EEEeceEEEEEeeCCCceEEEEecCCCeEeh
Q psy5057 24 VIESGRYEASVEIDGEDKLMHAYEDKGSFGE 54 (87)
Q Consensus 24 ~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g~ 54 (87)
++++|.+..+.....+.-....+...-.||+
T Consensus 11 V~LEG~IeS~kWS~kKTGF~VTIkQkR~FGe 41 (110)
T 2hql_A 11 VFLEGEIESSCWSVKKTGFLVTIKQMRFFGE 41 (110)
T ss_dssp EEEEEEEEEEEECTTCSEEEEEEEEEEEETT
T ss_pred EEEeeeeehhcccccCceEEEEEeehhhhcc
Confidence 5689999999988555544444444445554
No 152
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=61.66 E-value=28 Score=22.13 Aligned_cols=51 Identities=10% Similarity=0.161 Sum_probs=34.2
Q ss_pred eEEecCCCEEEec-CCCCCeEEEEEeceEEEEEee-CC--------Cc--eEEEEecCCCeEe
Q psy5057 3 EKPVEAGDIVIRQ-GDDGDFFYVIESGRYEASVEI-DG--------ED--KLMHAYEDKGSFG 53 (87)
Q Consensus 3 ~~~~~~g~~l~~~-g~~~~~~~~i~~G~v~~~~~~-~~--------~~--~~~~~~~~g~~~g 53 (87)
...+.+|-+...- ...++.+.++++|..++.... ++ +. .....+.+||+|=
T Consensus 285 ~v~l~pg~m~~PH~hp~A~ei~~V~~G~~~v~vv~~~~~~~~~~~g~~~~~~~~~l~~GdV~v 347 (445)
T 2cav_A 285 CLQMNEGALFVPHYNSRATVILVANEGRAEVELVGLEQQQQQGLESMQLRRYAATLSEGDIIV 347 (445)
T ss_dssp EEEECTTEEEEEEEESSCEEEEEEEESCEEEEEEEC-----------CCEEEEEEECTTCEEE
T ss_pred EEEeeCCceeeeEECCCCcEEEEEEeeEEEEEEEeCCCcccccccCcceEEEEeEecCCcEEE
Confidence 3456666655433 345689999999999888776 32 23 3567899999773
No 153
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=59.74 E-value=3.5 Score=20.18 Aligned_cols=48 Identities=8% Similarity=0.073 Sum_probs=28.2
Q ss_pred eEEecCCCEEEecCCCC-CeEEEEEeceEEEEEeeCCCceEEEEecCCCeE
Q psy5057 3 EKPVEAGDIVIRQGDDG-DFFYVIESGRYEASVEIDGEDKLMHAYEDKGSF 52 (87)
Q Consensus 3 ~~~~~~g~~l~~~g~~~-~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~ 52 (87)
...++||+-+-..--+. ..+++|.+|.+.+.. ++.......+.+|+.+
T Consensus 21 r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~--~d~~~~~~~l~~G~~~ 69 (98)
T 3lag_A 21 EWRLPPGSATGHHTHGMDYVVVPMADGEMTIVA--PDGTRSLAQLKTGRSY 69 (98)
T ss_dssp EEEECTTEECCSEECCSCEEEEESSCBC-CEEC--TTSCEECCCBCTTCCE
T ss_pred EEEECCCCccCcEECCCcEEEEEEeccEEEEEe--CCCceEEEEecCCcEE
Confidence 45667887776554444 456778899987654 2222334456777743
No 154
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=59.72 E-value=26 Score=21.08 Aligned_cols=69 Identities=7% Similarity=-0.057 Sum_probs=48.4
Q ss_pred eEEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEehhhhhcCCCceeEEEEecceeEEEEchhh
Q psy5057 3 EKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRKT 82 (87)
Q Consensus 3 ~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 82 (87)
..-|.+|+....+... +.++++++|...+.. .. ....+.++|..- -.....++..+.++|..+.+..+.
T Consensus 211 V~l~G~Ges~~~~~~~-d~wiWqLEGss~Vt~----~~-q~~~L~~~DsLL-----Ipa~~~y~~~r~~gsv~L~I~~~p 279 (286)
T 2qnk_A 211 VIAYGQGSSEGLRQNV-DVWLWQLEGSSVVTM----GG-RRLSLAPDDSLL-----VLAGTSYAWERTQGSVALSVTQDP 279 (286)
T ss_dssp EEEECSEEEEECCCSS-CEEEEEEESCEEEEE----TT-EEEEECTTEEEE-----ECTTCCEEEEECTTCEEEEEEECG
T ss_pred EEEEcCCccccccCcC-cEEEEEEcCceEEEE----CC-eEEeccCCCEEE-----ecCCCeEEEEecCCeEEEEEEECc
Confidence 3446778887777776 999999999986554 22 235667777442 233456788999999988876553
No 155
>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A
Probab=59.52 E-value=14 Score=20.45 Aligned_cols=33 Identities=12% Similarity=0.061 Sum_probs=22.2
Q ss_pred CeEEEEEeceEEEEEeeCCCceEEEEecCCCeEe
Q psy5057 20 DFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFG 53 (87)
Q Consensus 20 ~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g 53 (87)
..+++|++|....... .+.......+.+|+++-
T Consensus 101 ~Ei~~Vl~G~g~~~i~-~~d~~~~~~l~~GDli~ 133 (179)
T 1zrr_A 101 DEVRFFVEGAGLFCLH-IGDEVFQVLCEKNDLIS 133 (179)
T ss_dssp CEEEEEEESCCCCCEE-CSSCEEEEECCCSCEEE
T ss_pred heEEEEEcceEEEEEE-eCCEEEEEEECCCCEEE
Confidence 6799999999766543 22333345689999774
No 156
>2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid, reactive cysteine, cytosolic protein; 1.85A {Escherichia coli}
Probab=50.31 E-value=36 Score=19.92 Aligned_cols=67 Identities=13% Similarity=-0.015 Sum_probs=40.7
Q ss_pred EEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEehhhhhcCCCceeEEEEecceeEEEEc
Q psy5057 4 KPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMD 79 (87)
Q Consensus 4 ~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~ 79 (87)
..+++|+.+-.+-.....+.++++|.+.+-- ...-...+.+|+.... . .....++.|.++++++.++
T Consensus 187 ~~L~~g~~~~~~~~~~~~~l~v~~G~v~v~g----~~~~~~~l~~gd~~~l----~-~~~~l~l~a~~~a~~LL~d 253 (256)
T 2vec_A 187 IVLDKGESANFQLHGPRAYLQSIHGKFHALT----HHEEKAALTCGDGAFI----R-DEANITLVADSPLRALLID 253 (256)
T ss_dssp EEECTTCEEEEECSSSEEEEEEEESCEEEEE----TTEEEEEECTTCEEEE----E-SCSEEEEEESSSEEEEEEE
T ss_pred EEECCCCEEEEecCCCeEEEEEEECEEEECC----ccccceEECCCCEEEE----C-CCCeEEEEeCCCCEEEEEE
Confidence 4567787775554332366778899887642 1111234777774432 2 2335678888889888775
No 157
>3cjx_A Protein of unknown function with A cupin-like FOL; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.60A {Ralstonia eutropha}
Probab=49.84 E-value=13 Score=20.23 Aligned_cols=30 Identities=13% Similarity=0.047 Sum_probs=21.6
Q ss_pred eEEecCCCEEEecCCCCCeEEEEEeceEEE
Q psy5057 3 EKPVEAGDIVIRQGDDGDFFYVIESGRYEA 32 (87)
Q Consensus 3 ~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~ 32 (87)
..++++|..+-.-.-+.....+|++|..+.
T Consensus 47 lvr~~pG~~~p~H~H~g~ee~~VL~G~f~~ 76 (165)
T 3cjx_A 47 RASFAPGLTLPLHFHTGTVHMYTISGCWYY 76 (165)
T ss_dssp EEEECTTCBCCEEEESSCEEEEEEESEEEE
T ss_pred EEEECCCCcCCcccCCCCEEEEEEEEEEEE
Confidence 456677777765555567788899998864
No 158
>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}
Probab=49.68 E-value=25 Score=19.05 Aligned_cols=31 Identities=6% Similarity=0.077 Sum_probs=22.1
Q ss_pred CCCeEEEEEe--ceEEEEEeeCCCceEEEEecCCCeEe
Q psy5057 18 DGDFFYVIES--GRYEASVEIDGEDKLMHAYEDKGSFG 53 (87)
Q Consensus 18 ~~~~~~~i~~--G~v~~~~~~~~~~~~~~~~~~g~~~g 53 (87)
....+|+|++ |...+.. ... ...+++|+++-
T Consensus 65 ~~~E~~yVLe~~G~g~v~i----dge-~~~l~~GD~v~ 97 (157)
T 4h7l_A 65 EHQEIYVVLDHAAHATIEL----NGQ-SYPLTKLLAIS 97 (157)
T ss_dssp SCEEEEEEEEECTTCEEEE----TTE-EEECCTTEEEE
T ss_pred CCcEEEEEEecCcEEEEEE----CCE-EEEeCCCCEEE
Confidence 3457999999 9988776 222 36788988663
No 159
>2p17_A Pirin-like protein; GK1651, structural genomics, south collaboratory for structural genomics, protein structure in secsg; 1.52A {Geobacillus kaustophilus}
Probab=47.79 E-value=41 Score=19.86 Aligned_cols=70 Identities=13% Similarity=0.053 Sum_probs=41.6
Q ss_pred EEecCCCEEEec-CCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEehhhhhcCCC----ceeEEEEecceeEEEE
Q psy5057 4 KPVEAGDIVIRQ-GDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYNMP----RAATIKATSTGSLWAM 78 (87)
Q Consensus 4 ~~~~~g~~l~~~-g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~----~~~~~~a~~~~~~~~~ 78 (87)
..+++|+.+-.+ ...-+.+.++++|.+.+ +|... .+.+++... +.... ...++.|.++++++.+
T Consensus 172 ~~L~~g~~~~~~~~~~~~~~lyv~~G~v~v----~g~~~---~l~~~d~~~----~~~~~~~~~~~l~l~a~~~a~~Ll~ 240 (277)
T 2p17_A 172 MIVEPGTTVVQDLPGHYNGFLYILEGSGVF----GADNI---EGKAGQALF----FSRHNRGEETELNVTAREKLRLLLY 240 (277)
T ss_dssp EEECTTCEEEEEEETTCEEEEEEEESEEEE----TTTTE---EEETTEEEE----ECCCCTTCEEEEEEEESSSEEEEEE
T ss_pred EEECCCCEEEeccCCCCEEEEEEEeCeEEE----CCCce---EeCCCcEEE----EcCCCCCccceEEEEeCCCcEEEEE
Confidence 456777776433 23346778888998765 22111 355655332 22112 4567888888999988
Q ss_pred chhhhh
Q psy5057 79 DRKTFY 84 (87)
Q Consensus 79 ~~~~~~ 84 (87)
..+.+.
T Consensus 241 ~G~Pl~ 246 (277)
T 2p17_A 241 AGEPVN 246 (277)
T ss_dssp EECCCC
T ss_pred eccccC
Confidence 876653
No 160
>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}
Probab=45.70 E-value=13 Score=20.02 Aligned_cols=44 Identities=14% Similarity=0.098 Sum_probs=28.3
Q ss_pred eEEecCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEe
Q psy5057 3 EKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFG 53 (87)
Q Consensus 3 ~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g 53 (87)
..++++|..+-.-.-+.....+|++|..+.. + .. ..+.+|+++=
T Consensus 46 lvr~~pG~~~p~H~H~g~ee~~VL~G~~~~~---e-~~---~~~~~Gd~~~ 89 (159)
T 3ebr_A 46 LLKAPAGMEMPRHHHTGTVIVYTVQGSWRYK---E-HD---WVAHAGSVVY 89 (159)
T ss_dssp EEEECSSCBCCCEEESSCEEEEEEESCEEET---T-SS---CCBCTTCEEE
T ss_pred EEEECCCCCcccccCCCCEEEEEEEeEEEEe---C-CC---eEECCCeEEE
Confidence 3566777776655445567788999997632 1 11 3678888764
No 161
>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A
Probab=45.17 E-value=15 Score=21.18 Aligned_cols=34 Identities=18% Similarity=0.033 Sum_probs=23.4
Q ss_pred CCeEEEEEeceEEEEEee------CCC---------ceEEEEecCCCeE
Q psy5057 19 GDFFYVIESGRYEASVEI------DGE---------DKLMHAYEDKGSF 52 (87)
Q Consensus 19 ~~~~~~i~~G~v~~~~~~------~~~---------~~~~~~~~~g~~~ 52 (87)
.+.+++|++|.+.+.... ++. ......+.+|+++
T Consensus 64 ~~E~~yVLeG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GD~i 112 (239)
T 2xlg_A 64 INEWFWTPEGGIELFHSTKQYPNMDELPVVGGAGRGDLYSIQSEPKQLI 112 (239)
T ss_dssp EEEEEEETTCCCEEEEEEEECCCTTSCCSTTTTCCEEEEEEECCTTEEE
T ss_pred ccEEEEEEEeEEEEEEEecccccCCCcccccccccCceeEEEECCCCEE
Confidence 467899999999887611 111 1236789999966
No 162
>2oyz_A UPF0345 protein VPA0057; unknown function, structural genomi 2, protein structure initiative, midwest center for structu genomics, MCSG; 1.71A {Vibrio parahaemolyticus} SCOP: b.82.1.22
Probab=37.85 E-value=39 Score=16.72 Aligned_cols=58 Identities=9% Similarity=0.054 Sum_probs=35.3
Q ss_pred cCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEehhhhhcCCCceeEEEEeccee
Q psy5057 7 EAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYNMPRAATIKATSTGS 74 (87)
Q Consensus 7 ~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~ 74 (87)
.||+.=+.- ....+.=|++|.+++... .+.....+.+|+.|-.. .++...+++.+.+.
T Consensus 31 ~pGeytF~T--~~~E~M~vvsG~~~V~lp---g~~ew~~~~aGesF~Vp-----ans~F~l~v~~~~~ 88 (94)
T 2oyz_A 31 LPGEYTFGT--QAPERMTVVKGALVVKRV---GEADWTTYSSGESFDVE-----GNSSFELQVKDATA 88 (94)
T ss_dssp CSEEEEEEE--SSCEEEEEEESEEEEEET---TCSSCEEEETTCEEEEC-----SSEEEEEEESSCEE
T ss_pred eceEEEEcC--CCeEEEEEEEeEEEEEcC---CCCcCEEECCCCEEEEC-----CCCEEEEEEcccEe
Confidence 456544433 446777888898877764 23345667888877532 34455666666554
No 163
>2pa7_A DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysugar biosynthesis, S-layer biosynthesis, ketoisomerase; HET: TYD; 1.50A {Aneurinibacillus thermoaerophilus} SCOP: b.82.1.1 PDB: 2pae_A* 2pak_A* 2pam_A*
Probab=37.44 E-value=47 Score=17.54 Aligned_cols=62 Identities=10% Similarity=-0.009 Sum_probs=35.4
Q ss_pred CCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEehhhhhcCCCceeEEEEe-cceeEEEEchhh
Q psy5057 16 GDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYNMPRAATIKAT-STGSLWAMDRKT 82 (87)
Q Consensus 16 g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~-~~~~~~~~~~~~ 82 (87)
......+++.++|.+++.. .+|+......+.++.. |. .+...- -..+.+. ++|.++.+....
T Consensus 53 Hk~~~q~li~l~Gs~~v~l-dDg~~~~~~~L~~~~~-gL--~Ippgv-Wh~~~~~s~~avllvlas~~ 115 (141)
T 2pa7_A 53 HKKLEQVLVCLNGSCRVIL-DDGNIIQEITLDSPAV-GL--YVGPAV-WHEMHDFSSDCVMMVLASDY 115 (141)
T ss_dssp ESSCCEEEEEEESCEEEEE-ECSSCEEEEEECCTTE-EE--EECTTC-EEEEECCCTTCEEEEEESSC
T ss_pred CCCceEEEEEEccEEEEEE-ECCcEEEEEEECCCCc-EE--EeCCCE-EEEEEEcCCCeEEEEECCCC
Confidence 3456789999999998887 4566666666666553 21 111111 1334443 346666665443
No 164
>3bal_A Acetylacetone-cleaving enzyme; jelly roll, tetramer, dioxygenase, iron, metal-binding, oxidoreductase; 1.95A {Acinetobacter johnsonii}
Probab=32.75 E-value=45 Score=17.96 Aligned_cols=30 Identities=20% Similarity=0.185 Sum_probs=22.7
Q ss_pred eEEecCCCEEEecCCCCCeEEEEEeceEEE
Q psy5057 3 EKPVEAGDIVIRQGDDGDFFYVIESGRYEA 32 (87)
Q Consensus 3 ~~~~~~g~~l~~~g~~~~~~~~i~~G~v~~ 32 (87)
..++++|..+-.---+....++|++|....
T Consensus 50 lvr~~pG~~~p~H~H~g~ee~~VL~G~~~~ 79 (153)
T 3bal_A 50 IFNCPAGSSFASHIHAGPGEYFLTKGKMEV 79 (153)
T ss_dssp EEEECTTEEECCEEESSCEEEEEEESEEEE
T ss_pred EEEeCCCCCccCccCCCCEEEEEEEEEEEe
Confidence 456778877776666677889999999753
No 165
>1tq5_A Protein YHHW; bicupin, pirin, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, unknown function; 1.76A {Escherichia coli} SCOP: b.82.1.12
Probab=31.69 E-value=77 Score=18.31 Aligned_cols=64 Identities=13% Similarity=0.181 Sum_probs=40.1
Q ss_pred EEecCCCEEEecCC-CCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEehhhhhcCCCceeEEEEecceeEEEEchh
Q psy5057 4 KPVEAGDIVIRQGD-DGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYNMPRAATIKATSTGSLWAMDRK 81 (87)
Q Consensus 4 ~~~~~g~~l~~~g~-~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 81 (87)
..+++|+.+-.+-. .-+.+.++++|.+.+ +| ..+.+|+.... .+ ....++.|.++++++.+.-.
T Consensus 165 ~~l~~g~~~~~~~~~~~~~~~~v~~G~v~v----~g-----~~l~~gd~~~~----~~-~~~l~l~a~~~a~~Ll~~~~ 229 (242)
T 1tq5_A 165 WALLKDEQSVHQIAAERRVWIQVVKGNVTI----NG-----VKASTSDGLAI----WD-EQAISIHADSDSEVLLFDLP 229 (242)
T ss_dssp EEECTTCEEEECCCTTCEEEEEEEESEEEE----TT-----EEEETTCEEEE----ES-CSCEEEEESSSEEEEEEEEC
T ss_pred EEECCCCEEEeecCCCcEEEEEEccCcEEE----CC-----EEeCCCCEEEE----CC-CCeEEEEeCCCCEEEEEECC
Confidence 45678877755533 335667788999865 22 24667774432 12 23467888888988887654
No 166
>3kvp_A Uncharacterized protein YMZC; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.40A {Bacillus subtilis}
Probab=30.10 E-value=48 Score=15.42 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=18.5
Q ss_pred CCeEEEEEeceEEEEEee-CCCceE
Q psy5057 19 GDFFYVIESGRYEASVEI-DGEDKL 42 (87)
Q Consensus 19 ~~~~~~i~~G~v~~~~~~-~~~~~~ 42 (87)
-++|-++..|.+++++.+ +.+++.
T Consensus 29 ~nhFgv~e~g~iKIykyde~tNeI~ 53 (72)
T 3kvp_A 29 HNHFGVMEDGYIKIYEYNESRNEVK 53 (72)
T ss_dssp TTEEEEEETTEEEEEEEETTTTEEE
T ss_pred CCEEEEEeCCEEEEEEeCCCCCeEE
Confidence 378999999999999988 434433
No 167
>3hqx_A UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MCSG, structural genomics, protein STRU initiative, midwest center for structural genomics; 1.66A {Acinetobacter SP} SCOP: b.82.1.0
Probab=26.23 E-value=73 Score=16.29 Aligned_cols=60 Identities=10% Similarity=-0.042 Sum_probs=35.4
Q ss_pred cCCCEEEecCCCCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeEehhhhhcCCCceeEEEEeccee
Q psy5057 7 EAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYNMPRAATIKATSTGS 74 (87)
Q Consensus 7 ~~g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~ 74 (87)
.||+.-+.-|.......-|++|.+++... .+.....+.+|+.|-.. ..+...+++.+.+.
T Consensus 45 ~PGe~~YtF~T~~~E~MevvsG~l~V~Lp---g~~eW~~~~aGesF~Vp-----anssF~lkv~~~~~ 104 (111)
T 3hqx_A 45 LPTEQPLTFETHVPERMEIISGECRVKIA---DSTESELFRAGQSFYVP-----GNSLFKIETDEVLD 104 (111)
T ss_dssp CCCSSCEEEECSSCEEEEEEESEEEEEET---TCSSCEEEETTCEEEEC-----TTCEEEEECSSCEE
T ss_pred eccccceEEcCCCcEEEEEEEeEEEEEcC---CcccCEEeCCCCEEEEC-----CCCcEEEEECccee
Confidence 45551122233456788888999887764 33456677888877532 33445566555544
No 168
>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A
Probab=24.04 E-value=81 Score=16.01 Aligned_cols=30 Identities=7% Similarity=0.007 Sum_probs=19.7
Q ss_pred CCCeEEEEEeceEEEEEeeCCCceEEEEecCCCeE
Q psy5057 18 DGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSF 52 (87)
Q Consensus 18 ~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~g~~~ 52 (87)
..-.+.++++|...... +. ....+.+|+++
T Consensus 37 ~~~~i~~v~~G~~~~~i----~~-~~~~l~~Gd~~ 66 (164)
T 2arc_A 37 KGYILNLTIRGQGVVKN----QG-REFVCRPGDIL 66 (164)
T ss_dssp SSEEEEEEEEECEEEEE----TT-EEEEECTTCEE
T ss_pred CceEEEEEEEeEEEEEE----CC-EEEEecCCeEE
Confidence 34457889999987765 22 23566777755
No 169
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}
Probab=23.58 E-value=17 Score=16.17 Aligned_cols=14 Identities=29% Similarity=0.280 Sum_probs=0.4
Q ss_pred EEecCCCEEEecCC
Q psy5057 4 KPVEAGDIVIRQGD 17 (87)
Q Consensus 4 ~~~~~g~~l~~~g~ 17 (87)
+.+++|++|+.+..
T Consensus 2 ~~~~~G~~il~~~~ 15 (64)
T 2odd_A 2 NLYFQGENLYFQGD 15 (64)
T ss_dssp -------------C
T ss_pred CcCCCCCEEeeCCC
Confidence 45677777776643
No 170
>1dgw_X Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_X
Probab=23.26 E-value=70 Score=14.98 Aligned_cols=34 Identities=15% Similarity=0.238 Sum_probs=22.6
Q ss_pred eEEecCCCEEEec-CCCCCeEEEEEeceEEEEEee
Q psy5057 3 EKPVEAGDIVIRQ-GDDGDFFYVIESGRYEASVEI 36 (87)
Q Consensus 3 ~~~~~~g~~l~~~-g~~~~~~~~i~~G~v~~~~~~ 36 (87)
...+.+|-++..- ...+..+.+|++|...+-...
T Consensus 40 r~~l~~gg~~~PH~hprA~ei~~V~~G~~~v~~V~ 74 (79)
T 1dgw_X 40 CLQMNEGALFVPHYNSRATVILVANEGRAEVELVG 74 (79)
T ss_dssp EEEECTTCEEEEEEESSCEEEEEEEESCEEEEEEE
T ss_pred EEEEcCCcCcCCccCCCCcEEEEEEeceEEEEEec
Confidence 3456666665544 345678899999987766543
No 171
>3f1z_A Putative nucleic acid-binding lipoprotein; YP_001337197.1, S genomics, joint center for structural genomics, JCSG; 2.46A {Klebsiella pneumoniae subsp}
Probab=21.77 E-value=16 Score=18.21 Aligned_cols=14 Identities=36% Similarity=0.522 Sum_probs=2.6
Q ss_pred EEecCCCEEEecCC
Q psy5057 4 KPVEAGDIVIRQGD 17 (87)
Q Consensus 4 ~~~~~g~~l~~~g~ 17 (87)
..|.+|+.++++|+
T Consensus 5 afysagdklfqpgd 18 (133)
T 3f1z_A 5 AFYSAGDKLFQPGD 18 (133)
T ss_dssp ----------CCCH
T ss_pred hhhhccccccCCCh
Confidence 35667777777765
Done!