RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5057
(87 letters)
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit,
CAMP-dependent protein kinase catalytic subunit alpha;
PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus
norvegicus} PDB: 3idc_B*
Length = 161
Score = 127 bits (320), Expect = 2e-39
Identities = 49/83 (59%), Positives = 63/83 (75%)
Query: 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYN 60
MFEK V+ G+ VI QGDDGD FYVI+ G ++ V+ DG + + Y+++GSFGELAL+YN
Sbjct: 61 MFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMYN 120
Query: 61 MPRAATIKATSTGSLWAMDRKTF 83
PRAATI ATS G+LW +DR TF
Sbjct: 121 TPRAATITATSPGALWGLDRVTF 143
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit;
beta-barrel, CAMP-binding, catalytic subunit,
transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B*
3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Length = 154
Score = 115 bits (291), Expect = 3e-35
Identities = 36/83 (43%), Positives = 53/83 (63%), Gaps = 4/83 (4%)
Query: 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYN 60
MF AG+ VI+QGD+GD FYVI+ G +++ ++ + + GSFGELAL+Y
Sbjct: 61 MFPVSFIAGETVIQQGDEGDNFYVIDQGE----MDVYVNNEWATSVGEGGSFGELALIYG 116
Query: 61 MPRAATIKATSTGSLWAMDRKTF 83
PRAAT+KA + LW +DR ++
Sbjct: 117 TPRAATVKAKTNVKLWGIDRDSY 139
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase;
HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Length = 139
Score = 112 bits (281), Expect = 1e-33
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYN 60
M+ +I++GD G YV+E G+ E + E + FGELA+LYN
Sbjct: 46 MYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKE----GVKLCTMGPGKVFGELAILYN 101
Query: 61 MPRAATIKATSTGSLWAMDRKTF 83
R AT+K LWA+DR+ F
Sbjct: 102 CTRTATVKTLVNVKLWAIDRQCF 124
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB
tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A
{Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Length = 416
Score = 114 bits (285), Expect = 4e-32
Identities = 48/84 (57%), Positives = 63/84 (75%)
Query: 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYN 60
MFEK V+ G+ VI QGDDGD FYVI+ G ++ V+ DG + + Y+++GSFGELAL+YN
Sbjct: 168 MFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMYN 227
Query: 61 MPRAATIKATSTGSLWAMDRKTFY 84
P+AATI ATS G+LW +DR TF
Sbjct: 228 TPKAATITATSPGALWGLDRVTFR 251
Score = 84.0 bits (207), Expect = 5e-21
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Query: 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHA-------YEDKGSFG 53
+ K G+ +I QGD D F+++ESG + +++ G+ ++ FG
Sbjct: 290 IGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFRGQYFG 349
Query: 54 ELALLYNMPRAATIKATSTGSLWAMDRKTF 83
ELAL+ N PRAA+ A T AMD + F
Sbjct: 350 ELALVTNKPRAASAHAIGTVKCLAMDVQAF 379
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide
binding domain, evolution, PKA signaling, transfer; HET:
CMP; 2.21A {Saccharomyces cerevisiae}
Length = 246
Score = 102 bits (256), Expect = 6e-29
Identities = 41/85 (48%), Positives = 54/85 (63%), Gaps = 4/85 (4%)
Query: 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYN 60
+ EK V G +I+QGD GD+FYV+E G +V+ D +++ SFGELAL+YN
Sbjct: 30 LEEKSVPKGATIIKQGDQGDYFYVVEKG----TVDFYVNDNKVNSSGPGSSFGELALMYN 85
Query: 61 MPRAATIKATSTGSLWAMDRKTFYC 85
PRAAT+ ATS LWA+DR TF
Sbjct: 86 SPRAATVVATSDCLLWALDRLTFRK 110
Score = 89.9 bits (223), Expect = 4e-24
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYN 60
+ K + G+ +IR+GD G+ FY+IE G V G+ + +D FGE+ALL +
Sbjct: 148 LDTKIYQPGETIIREGDQGENFYLIEYG--AVDVSKKGQGVINK-LKDHDYFGEVALLND 204
Query: 61 MPRAATIKATSTGSLWAMDRKTF 83
+PR AT+ AT + + + F
Sbjct: 205 LPRQATVTATKRTKVATLGKSGF 227
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains,
cyclic nucleotide protein transferase, PKG; HET: CMP;
2.50A {Bos taurus}
Length = 299
Score = 99.6 bits (248), Expect = 2e-27
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYN 60
M+ +I++GD G YV+E G VE+ E + FGELA+LYN
Sbjct: 62 MYPVEYGKDSCIIKEGDVGSLVYVMEDG----KVEVTKEGVKLCTMGPGKVFGELAILYN 117
Query: 61 MPRAATIKATSTGSLWAMDRKTFYCNL 87
R AT+K LWA+DR+ F +
Sbjct: 118 CTRTATVKTLVNVKLWAIDRQCFQTIM 144
Score = 87.3 bits (216), Expect = 1e-22
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMH--AYEDKGSFGELALL 58
+ E E G+ +IRQG GD F++I G+ + E + + FGE AL
Sbjct: 180 LEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDWFGEKALQ 239
Query: 59 YNMPRAATIKATSTGSLWAMDRKTF 83
R A + A + +DR +F
Sbjct: 240 GEDVRTANVIAAEAVTCLVIDRDSF 264
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2,
CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus
musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Length = 469
Score = 100 bits (249), Expect = 9e-27
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYN 60
+FE + G ++ QG++G +Y+I G + ++ + FG+LAL+ +
Sbjct: 361 IFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY---GKGVVCTLHEGDDFGKLALVND 417
Query: 61 MPRAATIKATS-TGSLWAMDRKTFY 84
PRAA+I +D++ F
Sbjct: 418 APRAASIVLREDNCHFLRVDKEDFN 442
Score = 90.0 bits (222), Expect = 4e-23
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEI---DGEDKLMHAYEDKGSFGELAL 57
+ + +E G + RQGD G +Y + +G + V + + +FGE ++
Sbjct: 65 GYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGE-SI 123
Query: 58 LYNMPRAATIKATSTGSLWAMDRKTFYCN 86
L N PR ATI + L ++++ F
Sbjct: 124 LDNTPRHATIVTRESSELLRIEQEDFKAL 152
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ
domain containing guanine nucleotide exchange factor 2,
PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Length = 134
Score = 89.0 bits (221), Expect = 9e-25
Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Query: 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYN 60
+FE +AG I++ G + D +YVI +G +VEI D + SFG L
Sbjct: 40 IFEVVEQAGAIILEDGQELDSWYVILNG----TVEISHPDGKVENLFMGNSFGITPTLDK 95
Query: 61 MPRAATIKATSTGS-LWAMDRKTFY 84
++ + ++ ++
Sbjct: 96 QYMHGIVRTKVDDCQFVCIAQQDYW 120
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit,
CAMP-dependent protein kinase catalytic subunit A;
isoform diversity; HET: TPO SEP ATP; 3.70A {Homo
sapiens}
Length = 381
Score = 93.2 bits (231), Expect = 2e-24
Identities = 36/87 (41%), Positives = 52/87 (59%), Gaps = 4/87 (4%)
Query: 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYN 60
MF AG+ VI+QG++GD FYV++ G + V + + + GSFGELAL+Y
Sbjct: 153 MFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYVN----GEWVTNISEGGSFGELALIYG 208
Query: 61 MPRAATIKATSTGSLWAMDRKTFYCNL 87
PRAAT+KA + LW +DR ++ L
Sbjct: 209 TPRAATVKAKTDLKLWGIDRDSYRRIL 235
Score = 87.9 bits (217), Expect = 2e-22
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMH--AYEDKGSFGELALL 58
+ E G+ ++ QG+ GD FY+I G ++ + FGE+ALL
Sbjct: 271 LEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDYFGEIALL 330
Query: 59 YNMPRAATIKATSTGSLWAMDRKTF 83
N PRAAT+ A +DR F
Sbjct: 331 LNRPRAATVVARGPLKCVKLDRPRF 355
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit,
CAMP-dependent protein kinase, alpha-catalytic SU;
cyclic adenosine monophosphate; HET: SEP TPO ANP TAM;
2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Length = 291
Score = 87.8 bits (217), Expect = 6e-23
Identities = 37/87 (42%), Positives = 54/87 (62%), Gaps = 4/87 (4%)
Query: 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYN 60
MF AG+ VI+QGD+GD FYVI+ G +++ ++ + + GSFGELAL+Y
Sbjct: 62 MFPVSFIAGETVIQQGDEGDNFYVIDQGE----MDVYVNNEWATSVGEGGSFGELALIYG 117
Query: 61 MPRAATIKATSTGSLWAMDRKTFYCNL 87
PRAAT+KA + LW +DR ++ L
Sbjct: 118 TPRAATVKAKTNVKLWGIDRDSYRRIL 144
Score = 85.1 bits (210), Expect = 7e-22
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMH--AYEDKGSFGELALL 58
+ E G ++ QG+ GD F++I G ++ + FGE+ALL
Sbjct: 180 LEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIALL 239
Query: 59 YNMPRAATIKATSTGSLWAMDRKTF 83
N P+AAT+ A +DR F
Sbjct: 240 MNRPKAATVVARGPLKCVKLDRPRF 264
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG
potassium channel; dimer helical bundle beta barrel core
with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium
loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A*
1u12_A 3co2_A
Length = 138
Score = 76.2 bits (188), Expect = 9e-20
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Query: 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGS-FGELALLY 59
+ + V AG ++ R G+ GD + + G SV +L G+ FGE+AL+
Sbjct: 34 LRARTVPAGAVICRIGEPGDRMFFVVEG--SVSVATPNPVEL-----GPGAFFGEMALIS 86
Query: 60 NMPRAATIKATSTGSLWAMDRKTFY 84
PR+AT+ A +T SL ++ F
Sbjct: 87 GEPRSATVSAATTVSLLSLHSADFQ 111
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide
binding protein, structural genomics; HET: MSE CMP;
1.79A {Methylobacillus flagellatus KT}
Length = 187
Score = 75.6 bits (186), Expect = 6e-19
Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
Query: 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEI-DGEDKLMHAYEDKGSFGELALLY 59
M ++ +GD GD+ +I +G +I + + + GE++++
Sbjct: 62 MQCYAAPRDCQLLTEGDPGDYLLLILTGEVNVIKDIPNKGIQTIAKVGAGAIIGEMSMID 121
Query: 60 NMPRAATIKATSTGSLWAMDRKTFY 84
MPR+A+ A+ + R Y
Sbjct: 122 GMPRSASCVASLPTDFAVLSRDALY 146
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling;
HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB:
4avb_A* 4avc_A*
Length = 333
Score = 75.1 bits (184), Expect = 5e-18
Identities = 24/85 (28%), Positives = 37/85 (43%)
Query: 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYN 60
+ AG +++RQG+ F +I SG E S D ++ GE+ALL +
Sbjct: 36 VQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVAIIARALPGMIVGEIALLRD 95
Query: 61 MPRAATIKATSTGSLWAMDRKTFYC 85
PR+AT+ + W R F
Sbjct: 96 SPRSATVTTIEPLTGWTGGRGAFAT 120
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural
genomics, joint center for structural genomics; HET:
MSE; 1.90A {Geobacter metallireducens}
Length = 142
Score = 66.9 bits (164), Expect = 5e-16
Identities = 11/88 (12%), Positives = 28/88 (31%), Gaps = 4/88 (4%)
Query: 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEI----DGEDKLMHAYEDKGSFGELA 56
EK G ++ ++ D ++ G E + + + FG +
Sbjct: 29 SEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIFGVSS 88
Query: 57 LLYNMPRAATIKATSTGSLWAMDRKTFY 84
L+ ++ +AT + ++
Sbjct: 89 LIKPYHYTSSARATKPVRVVDINGARLR 116
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces
coelicolor structural genomics, PSI-2, protein structure
initiative; 2.00A {Streptomyces coelicolor A3}
Length = 149
Score = 66.1 bits (162), Expect = 1e-15
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 9/89 (10%)
Query: 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEI-----DGEDKLMHAYEDKGSFGEL 55
M E + GD + +GD GD YV+ G+ V++ DG + ++ GEL
Sbjct: 28 MSEVTLARGDTLFHEGDPGDRLYVVTEGK----VKLHRTSPDGRENMLAVVGPSELIGEL 83
Query: 56 ALLYNMPRAATIKATSTGSLWAMDRKTFY 84
+L PR AT A + L A+
Sbjct: 84 SLFDPGPRTATGTALTEVKLLALGHGDLQ 112
>2z69_A DNR protein; beta barrel, dimerization helix, transcription
regulator; 2.10A {Pseudomonas aeruginosa}
Length = 154
Score = 60.0 bits (146), Expect = 3e-13
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 10/89 (11%)
Query: 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEI-----DGEDKLMHAYEDKGSFGEL 55
++ G V RQG+ FY + SG V+I +G++K++ ++ +F E
Sbjct: 35 SDLVNLDKGAYVFRQGEPAHAFYYLISGC----VKIYRLTPEGQEKILEVTNERNTFAEA 90
Query: 56 ALLYNMPR-AATIKATSTGSLWAMDRKTF 83
+ + P AT +A L+ K +
Sbjct: 91 MMFMDTPNYVATAQAVVPSQLFRFSNKAY 119
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Length = 231
Score = 60.4 bits (147), Expect = 5e-13
Identities = 17/82 (20%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 3 EKPVEAGDIVIRQGDDGDFFYVIESGRYEASVE-IDGEDKLMHAYEDKGSFGELALLYNM 61
E+ + ++V+ Q +G+ +++ +G S + G ++++ G GE A+L +
Sbjct: 31 ERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVGETAVLAHQ 90
Query: 62 PRAATIKATSTGSLWAMDRKTF 83
R+A+++A + + R+ F
Sbjct: 91 ERSASVRALTPVRTLMLHREHF 112
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP
regulatory protein, structural genomi 2, protein
structure initiative; 2.20A {Ruegeria pomeroyi} PDB:
3h3z_A*
Length = 237
Score = 60.4 bits (147), Expect = 7e-13
Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 9/88 (10%)
Query: 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEI-----DGEDKLMHAYEDKGSFGEL 55
+ + G+ + Q + +V+ G V++ G + ++ + SFGE
Sbjct: 34 AVWRSYDRGETLFLQEEKAQAIHVVIDGW----VKLFRMTPTGSEAVVSVFTRGESFGEA 89
Query: 56 ALLYNMPRAATIKATSTGSLWAMDRKTF 83
L N P + +A + + + F
Sbjct: 90 VALRNTPYPVSAEAVTPCEVMHIPSPVF 117
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged
helix-turn-helix motif, DNA binding, transcription
activator; HET: CMP; 2.40A {Thermus thermophilus}
Length = 216
Score = 59.2 bits (144), Expect = 1e-12
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 9/86 (10%)
Query: 3 EKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEI-----DGEDKLMHAYEDKGSFGELAL 57
+ G + QGD G Y++ SG+ V + G+++ + FGE++L
Sbjct: 24 RRLYPQGKPIFYQGDLGQALYLVASGK----VRLFRTHLGGQERTLALLGPGELFGEMSL 79
Query: 58 LYNMPRAATIKATSTGSLWAMDRKTF 83
L R+A+ A L A+ R+ +
Sbjct: 80 LDEGERSASAVAVEDTELLALFREDY 105
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic
nucleotide binding domain, C-linker, CAM SPHCN1, HCN;
HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Length = 198
Score = 58.0 bits (141), Expect = 4e-12
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 9 GDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGS-FGELALLYNMPRAATI 67
D VI++G GD + I+ G V+I D ++ GS FGE+ LL R A++
Sbjct: 102 ADYVIQEGTFGDRMFFIQQG----IVDIIMSDGVIATSLSDGSYFGEICLLTRERRVASV 157
Query: 68 KATSTGSLWAMDRKTF 83
K + +L+++ + F
Sbjct: 158 KCETYCTLFSLSVQHF 173
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP),
dimer, inactive(APO, unliganded allostery, DNA binding,
cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB:
3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Length = 227
Score = 58.0 bits (141), Expect = 4e-12
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 3 EKPVEAGDIVIRQGDDGDFFYVIESGRYEASVE-IDGEDKLMHAYEDKGSFGELALLYNM 61
G V +G+ GD Y+I SG+ + DG + L+ FGEL++
Sbjct: 31 PVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGELSIFDPG 90
Query: 62 PRAATIKATSTGSLWAMDRKTF 83
PR ++ + +MDR
Sbjct: 91 PRTSSATTITEVRAVSMDRDAL 112
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA;
3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Length = 355
Score = 57.6 bits (139), Expect = 1e-11
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYN 60
+ + V AG ++ R G+ GD + + G SV +L FGE+AL+
Sbjct: 251 LRARTVPAGAVICRIGEPGDRMFFVVEG--SVSVATPNPVEL----GPGAFFGEMALISG 304
Query: 61 MPRAATIKATSTGSLWAMDRKTF 83
PR+AT+ A +T SL ++ F
Sbjct: 305 EPRSATVSAATTVSLLSLHSADF 327
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable
regulatory domain of potassium channel, membrane PR
transport protein; 2.20A {Mus musculus}
Length = 160
Score = 55.0 bits (133), Expect = 2e-11
Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 9 GDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYNMP--RAAT 66
GD++ G+ D + SG S+E+ +D+++ FG++ A
Sbjct: 58 GDLIYHAGESVDSLCFVVSG----SLEVIQDDEVVAILGKGDVFGDVFWKEATLAQSCAN 113
Query: 67 IKATSTGSLWAMDRKTF 83
++A + L + R
Sbjct: 114 VRALTYCDLHVIKRDAL 130
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic
nucleotide-gated channel 2; CNBD, C-linker, pacemaker,
HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A
{Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A*
3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Length = 202
Score = 55.8 bits (135), Expect = 3e-11
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 9 GDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYNMPRAATIK 68
GD +IR+G G Y I+ G V + + D FGE+ LL R A+++
Sbjct: 103 GDYIIREGTIGKKMYFIQHG----VVSVLTKGNKEMKLSDGSYFGEICLLTRGRRTASVR 158
Query: 69 ATSTGSLWAMDRKTF 83
A + L+++ F
Sbjct: 159 ADTYCRLYSLSVDNF 173
>2byv_E RAP guanine nucleotide exchange factor 4; EPAC2, CAMP-GEF2, CAMP,
cyclic nucleotide, regulation, auto-inhibition, CDC25
homology domain; 2.7A {Mus musculus}
Length = 999
Score = 56.0 bits (134), Expect = 4e-11
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 12/91 (13%)
Query: 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKG-------SFG 53
+ + +E G + RQGD G +Y + +G S+++ + H +FG
Sbjct: 65 GYYENLEKGITLFRQGDIGTNWYAVLAG----SLDVKVSETSSHQDAVTICTLGIGTAFG 120
Query: 54 ELALLYNMPRAATIKATSTGSLWAMDRKTFY 84
E ++L N PR ATI + L ++++ F
Sbjct: 121 E-SILDNTPRHATIVTRESSELLRIEQEDFK 150
Score = 53.3 bits (127), Expect = 4e-10
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEI-DGEDKLMHAYEDKGSFGELALLY 59
+FE + G ++ QG++G +Y+I G SV + ++ + FG+LAL+
Sbjct: 361 IFESHAKGGTVLFNQGEEGTSWYIILKG----SVNVVIYGKGVVCTLHEGDDFGKLALVN 416
Query: 60 NMPRAATIKAT-STGSLWAMDRKTFYC 85
+ PRAA+I +D++ F
Sbjct: 417 DAPRAASIVLREDNCHFLRVDKEDFNR 443
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity,
CRP, CLP, C-DI-GMP receptor, quorum SENS binding,
transcription; 2.30A {Xanthomonas campestris PV}
Length = 230
Score = 54.2 bits (131), Expect = 1e-10
Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 2/83 (2%)
Query: 3 EKPVEAGDIVIRQGDDGDFFYVIESGRYEASVE-IDGEDKLMHAYEDKGSFGELALLY-N 60
+ V R GD Y + SG E D + ++ + GE+ L +
Sbjct: 36 RRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVGEMGLFIES 95
Query: 61 MPRAATIKATSTGSLWAMDRKTF 83
R ++ + L + +
Sbjct: 96 DTREVILRTRTQCELAEISYERL 118
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4,
CAMP, SP-camps, GEF, gunanine nucleotide exchange
factor, G-protein, GTP-binding, nucleotide-binding; HET:
SP1; 2.20A {Mus musculus}
Length = 694
Score = 54.8 bits (131), Expect = 1e-10
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYN 60
+FE + G ++ QG++G +Y+I G + G +H +D FG+LAL+ +
Sbjct: 56 IFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDD---FGKLALVND 112
Query: 61 MPRAATIKATSTGS-LWAMDRKTFYCNL 87
PRAA+I +D++ F L
Sbjct: 113 APRAASIVLREDNCHFLRVDKEDFNRIL 140
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics,
porphyromona gingivalis, PSI, protein structure
initiative; 1.90A {Porphyromonas gingivalis} SCOP:
a.4.5.4 b.82.3.2
Length = 232
Score = 53.4 bits (129), Expect = 2e-10
Identities = 12/82 (14%), Positives = 27/82 (32%), Gaps = 1/82 (1%)
Query: 3 EKPVEAGDIVIRQGDDGDFFYVIESGRYEASVE-IDGEDKLMHAYEDKGSFGELALLYNM 61
P + V +GD + + + G+ + E + G + + FG
Sbjct: 35 PFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYFAEE 94
Query: 62 PRAATIKATSTGSLWAMDRKTF 83
++T A + A+ +
Sbjct: 95 TCSSTAIAVENSKVLAIPVEAI 116
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide
monophosphate, CNMP, CNMP-binding, structural genomics;
NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Length = 137
Score = 52.1 bits (125), Expect = 2e-10
Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 11/87 (12%)
Query: 8 AGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYE-DKGS-FGELALLYNM---- 61
++R+GD + I GR E+ G + +G G+ L + +
Sbjct: 36 EKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDELLTWALDPKS 95
Query: 62 -----PRAATIKATSTGSLWAMDRKTF 83
T+KA + +A+
Sbjct: 96 GSNLPSSTRTVKALTEVEAFALIADEL 122
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix,
homodimer, transcription regulator; 3.60A {Pseudomonas
aeruginosa}
Length = 227
Score = 53.4 bits (129), Expect = 2e-10
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 10/87 (11%)
Query: 3 EKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEI-----DGEDKLMHAYEDKGSFGELAL 57
++ G V RQG+ FY + SG V+I +G++K++ ++ +F E +
Sbjct: 34 LVNLDKGAYVFRQGEPAHAFYYLISGC----VKIYRLTPEGQEKILEVTNERNTFAEAMM 89
Query: 58 LYNMPR-AATIKATSTGSLWAMDRKTF 83
+ P AT +A L+ K +
Sbjct: 90 FMDTPNYVATAQAVVPSQLFRFSNKAY 116
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery,
DNA binding cyclic A transcription regulator; HET: CMP;
1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A*
3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A*
1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A*
3rdi_A* 3rou_A* 3rpq_A* ...
Length = 210
Score = 52.6 bits (127), Expect = 3e-10
Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 10/87 (11%)
Query: 3 EKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEI-----DGEDKLMHAYEDKGSFGELAL 57
+ +I QG+ + Y I G V + +G++ ++ GEL L
Sbjct: 21 IHKYPSKSTLIHQGEKAETLYYIVKGS----VAVLIKDEEGKEMILSYLNQGDFIGELGL 76
Query: 58 LYN-MPRAATIKATSTGSLWAMDRKTF 83
R+A ++A + + + K F
Sbjct: 77 FEEGQERSAWVRAKTACEVAEISYKKF 103
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic
nucleotide-binding domain, structural genomics, joint
for structural genomics; 2.55A {Eubacterium rectale atcc
33656}
Length = 220
Score = 52.6 bits (127), Expect = 4e-10
Identities = 15/88 (17%), Positives = 35/88 (39%), Gaps = 7/88 (7%)
Query: 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGR---YEASVEIDGEDKLMHAYE--DKGSFGEL 55
+ + V+ G I+ D +++SG+ Y S +G + ++ D
Sbjct: 26 LITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILS--DEGREITLYRLFDMDMCLLSAS 83
Query: 56 ALLYNMPRAATIKATSTGSLWAMDRKTF 83
++ ++ TI+A LW + + +
Sbjct: 84 CIMRSIQFEVTIEAEKDTDLWIIPAEIY 111
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding,
DNA-binding nucleotide-binding, transcription,
transcription regulation; HET: CMP; 1.66A {Escherichia
coli}
Length = 260
Score = 52.8 bits (127), Expect = 4e-10
Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 10/87 (11%)
Query: 3 EKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEI-----DGEDKLMHAYEDKGSFGELAL 57
+ +I QG+ + Y I G V + +G++ ++ GEL L
Sbjct: 71 IHKYPSKSTLIHQGEKAETLYYIVKGS----VAVLIKDEEGKEMILSYLNQGDFIGELGL 126
Query: 58 LYN-MPRAATIKATSTGSLWAMDRKTF 83
R+A ++A + + + K F
Sbjct: 127 FEEGQERSAWVRAKTACEVAEISYKKF 153
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix,
transcription factor, CAMP-B proteins, CAMP receptor
protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP:
a.4.5.4 b.82.3.2
Length = 207
Score = 51.8 bits (125), Expect = 8e-10
Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 5/86 (5%)
Query: 3 EKPVEAGDIVIRQGDDGDFFYVIESGRYEASVE-IDGEDKLMHAYEDKGSFGELALL--- 58
+ A +I GD + + I G +E DG + ++ FGEL L
Sbjct: 15 RRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKE 74
Query: 59 -YNMPRAATIKATSTGSLWAMDRKTF 83
R+A ++A + + F
Sbjct: 75 GSEQERSAWVRAKVECEVAEISYAKF 100
>3ukn_A Novel protein similar to vertebrate potassium VOL channel,
subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD,
CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB:
3ukt_B 3ukv_B
Length = 212
Score = 50.1 bits (120), Expect = 3e-09
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 9 GDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYN--MPRAAT 66
G+ +IRQGD Y + SG S+E+ ++ ++ G +L + A
Sbjct: 106 GEFLIRQGDALQAIYFVCSG----SMEVLKDNTVLAILGKGDLIGSDSLTKEQVIKTNAN 161
Query: 67 IKATSTGSLWAMDRKTF 83
+KA + L + K
Sbjct: 162 VKALTYCDLQYISLKGL 178
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration;
HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP:
a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A*
3e5q_A 2h6b_A* 2h6c_A
Length = 250
Score = 49.6 bits (119), Expect = 6e-09
Identities = 13/86 (15%), Positives = 26/86 (30%), Gaps = 12/86 (13%)
Query: 3 EKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEI-----DGEDKLMHAYEDKGSFGELAL 57
+ G VI G++ + G+ +++ DG +KL++ G+L
Sbjct: 34 IRDFAKGSAVIMPGEEITSMIFLVEGK----IKLDIIFEDGSEKLLYYAGGNSLIGKLYP 89
Query: 58 LYNMPRAATIKATSTGSLWAMDRKTF 83
A K+
Sbjct: 90 T---GNNIYATAMEPTRTCWFSEKSL 112
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription,
transcription regulation; HET: BOG; 1.90A {Anabaena}
PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Length = 243
Score = 49.3 bits (118), Expect = 8e-09
Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 11/87 (12%)
Query: 4 KPVEAGDIVIRQGDDGDFFYVIESGRYEASVEI-----DGEDKLMHAYEDKGSFGELALL 58
+ E + GD + Y + G V++ GE+ + + FG L+LL
Sbjct: 46 ETFERNKTIFFPGDPAERVYFLLKGA----VKLSRVYEAGEEITVALLRENSVFGVLSLL 101
Query: 59 YN--MPRAATIKATSTGSLWAMDRKTF 83
R A + L + +
Sbjct: 102 TGNKSDRFYHAVAFTPVELLSAPIEQV 128
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG,
PSI, protein structure initiative, joint center for S
genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Length = 213
Score = 48.8 bits (117), Expect = 1e-08
Identities = 11/83 (13%), Positives = 28/83 (33%), Gaps = 2/83 (2%)
Query: 3 EKPVEAGDIVIRQGDDGDFFYVIESGRYEASVE-IDGEDKLMHAYEDKGSFGELALLYNM 61
G+IV Q D + ++ G + +G+ + + + +
Sbjct: 24 VIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFSSE 83
Query: 62 PR-AATIKATSTGSLWAMDRKTF 83
PR + A + ++ ++ F
Sbjct: 84 PRFPVNVVAGENSKILSIPKEVF 106
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken
structural genomics/proteomics in RSGI; 1.92A {Thermus
thermophilus} PDB: 2zdb_A
Length = 195
Score = 48.3 bits (116), Expect = 1e-08
Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 2/81 (2%)
Query: 4 KPVEAGDIVIRQGDDGDFFYVIESGRYEASVE-IDGEDKLMHAYEDKGSFGELALLYNMP 62
K + + +G++ Y +E G DG + FGE AL
Sbjct: 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGEEALE-GKA 60
Query: 63 RAATIKATSTGSLWAMDRKTF 83
T +A + + ++ +
Sbjct: 61 YRYTAEAMTEAVVQGLEPRAM 81
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat
transcription; HET: PR3; 2.3A {Listeria monocytogenes}
SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Length = 238
Score = 48.1 bits (115), Expect = 2e-08
Identities = 6/86 (6%), Positives = 23/86 (26%), Gaps = 3/86 (3%)
Query: 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVE-IDGEDKLMHAYEDKGSFGELALLY 59
+ K +++ Q D ++ + G + + +G + Y+ +
Sbjct: 18 IKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYKGAFVIMSGFIDT 77
Query: 60 NMPRA--ATIKATSTGSLWAMDRKTF 83
+ + + +
Sbjct: 78 ETSVGYYNLEVISEQATAYVIKINEL 103
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural
genomics, joint center for structura genomics, JCSG;
2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4
b.82.3.2
Length = 232
Score = 47.7 bits (114), Expect = 3e-08
Identities = 10/89 (11%), Positives = 27/89 (30%), Gaps = 10/89 (11%)
Query: 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEI-----DGEDKLMHAYEDKGSFGEL 55
+ +AG+ +I+ G+ + G + I + ++ E
Sbjct: 43 LHFIKHKAGETIIKSGNPCTQLCFLLKGE----ISIVTNAKENIYTVIEQIEAPYLIEPQ 98
Query: 56 ALLYNMPR-AATIKATSTGSLWAMDRKTF 83
+L A++ A + + +
Sbjct: 99 SLFGMNTNYASSYVAHTEVHTVCISKAFV 127
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary
phase, DNA-binding, transcription regulation; 1.50A
{Thermus thermophilus}
Length = 202
Score = 45.3 bits (108), Expect = 2e-07
Identities = 19/88 (21%), Positives = 30/88 (34%), Gaps = 12/88 (13%)
Query: 3 EKPVEAGDIVIRQGDDG--DFFYVIESGRYEASVEI-----DGEDKLMHAYEDKGSFGEL 55
+AGD+++ G G D Y + G V + +G + G FGE
Sbjct: 7 TVSFKAGDVILYPGVPGPRDRAYRVLEGL----VRLEAVDEEGNALTLRLVRPGGFFGEE 62
Query: 56 ALLYNMPRAATIKATSTGSLWAMDRKTF 83
AL R +A + L +
Sbjct: 63 ALF-GQERIYFAEAATDVRLEPLPENPD 89
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA
transcription regulator, DNA binding protein; HET: HEM;
2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Length = 220
Score = 45.7 bits (109), Expect = 2e-07
Identities = 12/81 (14%), Positives = 29/81 (35%), Gaps = 7/81 (8%)
Query: 3 EKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYNMP 62
E+ I+ + + ++++SGR + + ++ + E F
Sbjct: 29 EQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYEDKEFTLAILEAGDIFCTHTR----- 83
Query: 63 RAATIKATSTGSLWAMDRKTF 83
A I+A ++ D + F
Sbjct: 84 --AFIQAMEDTTILYTDIRNF 102
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme
sensor, catabolite gene activator protein; HET: HEM;
2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Length = 222
Score = 44.6 bits (106), Expect = 3e-07
Identities = 13/83 (15%), Positives = 26/83 (31%), Gaps = 7/83 (8%)
Query: 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYN 60
K G +V D + +V+ GR + + + + F +
Sbjct: 23 FRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREISLFYLTSGDMFCMHS---- 78
Query: 61 MPRAATIKATSTGSLWAMDRKTF 83
++AT + D +TF
Sbjct: 79 ---GCLVEATERTEVRFADIRTF 98
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics,
APC88869, cyclic nucleotide binding REG protein, PSI-2;
1.80A {Cytophaga hutchinsonii}
Length = 194
Score = 33.2 bits (76), Expect = 0.004
Identities = 14/84 (16%), Positives = 26/84 (30%), Gaps = 2/84 (2%)
Query: 3 EKPVEAGDIVIRQGDDGDFFYVIESG--RYEASVEIDGEDKLMHAYEDKGSFGELALLYN 60
K V + +++ G+ Y + G R E E A E+ +A
Sbjct: 32 LKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLSDYMAFQKQ 91
Query: 61 MPRAATIKATSTGSLWAMDRKTFY 84
P I++ L ++
Sbjct: 92 QPADFYIQSVENCELLSITYTEQE 115
>2nsm_A Carboxypeptidase N catalytic chain; caroxypeptidase, zinc
peptidase, transthyretin-like domain, processing,
peptide modification, hydrolase; HET: NAG; 2.10A {Homo
sapiens}
Length = 439
Score = 28.4 bits (63), Expect = 0.26
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 6 VEAGDIVIRQGDDGDFFYVIESGRYEASVEIDG 38
V + + GD GD+F ++ G Y S G
Sbjct: 342 VSGINHDVTSGDHGDYFRLLLPGIYTVSATAPG 374
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.6 bits (58), Expect = 1.0
Identities = 14/110 (12%), Positives = 26/110 (23%), Gaps = 41/110 (37%)
Query: 3 EKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEID------GEDKLMHAYEDKGS----- 51
+ + +I+ Y A + L A + +
Sbjct: 113 DTTLVKTKELIKN-------Y------ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI 159
Query: 52 FG----------ELALLYNM--PRAATIKATSTGSLW-----AMDRKTFY 84
FG EL LY + S +L +D + +
Sbjct: 160 FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF 209
>1h8l_A Carboxypeptidase GP180 residues 503-882; hydrolase, zinc-dependent
protease; HET: NAG BMA NDG GEM; 2.6A {Lophonetta
specularioides} SCOP: b.3.2.1 c.56.5.1 PDB: 1qmu_A*
Length = 380
Score = 24.8 bits (54), Expect = 4.1
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 6 VEAGDIVIRQGDDGDFFYVIESGRYEASVEIDG 38
V + + DGD++ ++ G Y+ + G
Sbjct: 323 VADINHPVTTYKDGDYWRLLVQGTYKVTASARG 355
>1uwy_A Carboxypeptidase M; metallopeptidase, GPI-anchor, metalloprotease,
zinc, lipoprotein, hydrolase, structural proteomics in
europe, spine; HET: NAG; 3.0A {Homo sapiens} SCOP:
b.3.2.1 c.56.5.1
Length = 426
Score = 24.6 bits (53), Expect = 5.2
Identities = 10/65 (15%), Positives = 22/65 (33%), Gaps = 3/65 (4%)
Query: 11 IVIRQGDDGDFFYVIESGRYEASVEIDG---EDKLMHAYEDKGSFGELALLYNMPRAATI 67
R G+++ ++ G Y +V + G + E +F L +P +
Sbjct: 324 CPYRTNKYGEYYLLLLPGSYIINVTVPGHDPHITKVIIPEKSQNFSALKKDILLPFQGQL 383
Query: 68 KATST 72
+
Sbjct: 384 DSIPV 388
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase;
2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A*
2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Length = 322
Score = 24.7 bits (53), Expect = 5.3
Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 10/59 (16%)
Query: 18 DGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYNMPRAATIKATSTGSLW 76
D F V E + +++ + + G +L +P IK + G W
Sbjct: 195 DSSFVLVAEFLSH----------QIVKYWLEGPKKGTAEVLVKIPNPGNIKRNADGHFW 243
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller,
superbarrel; HET: PQQ; 1.50A {Acinetobacter
calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A*
1qbi_A
Length = 454
Score = 24.1 bits (52), Expect = 6.7
Identities = 7/39 (17%), Positives = 14/39 (35%), Gaps = 3/39 (7%)
Query: 13 IRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGS 51
+ DG+ YV+ + + + E+ GS
Sbjct: 410 VIASPDGNVLYVLTDTAGNV---QKDDGSVTNTLENPGS 445
>2c2i_A RV0130; hotdog, hydratase, lyase, structural proteomics in europe,
spine, structural genomics; 1.8A {Mycobacterium
tuberculosis} SCOP: d.38.1.4
Length = 151
Score = 23.7 bits (51), Expect = 8.1
Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 13/48 (27%)
Query: 2 FEKPVEAGDIV--------IRQGDDGDFFYVIESGRYEASVEIDGEDK 41
F PV G V + +G +VE++G K
Sbjct: 96 FPAPVPVGSRVRATSSLVGVEDLGNGTV-----QATVSTTVEVEGSAK 138
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.407
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,376,546
Number of extensions: 71289
Number of successful extensions: 279
Number of sequences better than 10.0: 1
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 63
Length of query: 87
Length of database: 6,701,793
Length adjustment: 55
Effective length of query: 32
Effective length of database: 5,166,138
Effective search space: 165316416
Effective search space used: 165316416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.4 bits)