RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5057
(87 letters)
>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 136
Score = 65.6 bits (159), Expect = 5e-16
Identities = 49/83 (59%), Positives = 63/83 (75%)
Query: 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYN 60
MFEK V+ G+ VI QGDDGD FYVI+ G ++ V+ DG + + Y+++GSFGELAL+YN
Sbjct: 39 MFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMYN 98
Query: 61 MPRAATIKATSTGSLWAMDRKTF 83
PRAATI ATS G+LW +DR TF
Sbjct: 99 TPRAATITATSPGALWGLDRVTF 121
>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A
{Cow (Bos taurus) [TaxId: 9913]}
Length = 136
Score = 61.3 bits (148), Expect = 2e-14
Identities = 36/83 (43%), Positives = 52/83 (62%), Gaps = 4/83 (4%)
Query: 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYN 60
MF AG+ VI+QGD+GD FYVI+ G + + ++ + + GSFGELAL+Y
Sbjct: 43 MFPVSFIAGETVIQQGDEGDNFYVIDQGEMD----VYVNNEWATSVGEGGSFGELALIYG 98
Query: 61 MPRAATIKATSTGSLWAMDRKTF 83
PRAAT+KA + LW +DR ++
Sbjct: 99 TPRAATVKAKTNVKLWGIDRDSY 121
>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 147
Score = 52.5 bits (125), Expect = 7e-11
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDK-------GSFG 53
+ K G+ +I QGD D F+++ESG +++ G+ + + FG
Sbjct: 25 IGTKVYNDGEQIIAQGDSADSFFIVESGEVRITMKRKGKSDIEENGAVEIARCLRGQYFG 84
Query: 54 ELALLYNMPRAATIKATSTGSLWAMDRKTF 83
ELAL+ N PRAA+ A T AMD + F
Sbjct: 85 ELALVTNKPRAASAHAIGTVKCLAMDVQAF 114
>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 132
Score = 51.8 bits (123), Expect = 1e-10
Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Query: 3 EKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAY-EDKGSFGELALLYNM 61
+ +I QG+ + Y I G ++ + +++ +Y GEL L
Sbjct: 15 IHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG 74
Query: 62 -PRAATIKATSTGSLWAMDRKTF 83
R+A ++A + + + K F
Sbjct: 75 QERSAWVRAKTACEVAEISYKKF 97
>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1
and 3 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 124
Score = 49.7 bits (118), Expect = 6e-10
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKG-SFGELALLY 59
+FE + G ++ QG++G +Y+I + SV + K + +G FG+LAL+
Sbjct: 34 IFESHAKGGTVLFNQGEEGTSWYIIL----KGSVNVVIYGKGVVCTLHEGDDFGKLALVN 89
Query: 60 NMPRAATIKATSTGS-LWAMDRKTF 83
+ PRAA+I +D++ F
Sbjct: 90 DAPRAASIVLREDNCHFLRVDKEDF 114
>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A
{Cow (Bos taurus) [TaxId: 9913]}
Length = 132
Score = 49.4 bits (117), Expect = 8e-10
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHA--YEDKGSFGELALL 58
+ E G ++ QG+ GD F++I G ++ + FGE+ALL
Sbjct: 25 LEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIALL 84
Query: 59 YNMPRAATIKATSTGSLWAMDRKTF 83
N PRAAT+ A +DR F
Sbjct: 85 MNRPRAATVVARGPLKCVKLDRPRF 109
>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 134
Score = 46.3 bits (109), Expect = 1e-08
Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 5/88 (5%)
Query: 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGS-FGELALL- 58
+ A +I GD + + I G +E D +++ Y + G FGEL L
Sbjct: 12 CHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFE 71
Query: 59 ---YNMPRAATIKATSTGSLWAMDRKTF 83
R+A ++A + + F
Sbjct: 72 KEGSEQERSAWVRAKVECEVAEISYAKF 99
>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396,
N-terminal domain {Porphyromonas gingivalis [TaxId:
837]}
Length = 142
Score = 46.4 bits (109), Expect = 1e-08
Identities = 11/84 (13%), Positives = 26/84 (30%), Gaps = 1/84 (1%)
Query: 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGEL-ALLY 59
+ P + V +GD + + + G+ + E + G F +
Sbjct: 24 IQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYFA 83
Query: 60 NMPRAATIKATSTGSLWAMDRKTF 83
++T A + A+ +
Sbjct: 84 EETCSSTAIAVENSKVLAIPVEAI 107
>d2zcwa2 b.82.3.2 (A:6-117) Transcriptional regulator TTHA1359,
N-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 112
Score = 41.5 bits (96), Expect = 7e-07
Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 2/84 (2%)
Query: 6 VEAGDIVIRQGDDG--DFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYNMPR 63
+AGD+++ G G D Y + G + + L G F L+ R
Sbjct: 5 FKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGEEALFGQER 64
Query: 64 AATIKATSTGSLWAMDRKTFYCNL 87
+A + L + L
Sbjct: 65 IYFAEAATDVRLEPLPENPDPELL 88
>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1
and 3 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 155
Score = 41.7 bits (97), Expect = 1e-06
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 1 MFEKPVEAGDIVIRQGDDGDFFYVIESG--RYEASVEIDGEDKLMHAYEDKGSFGELALL 58
+ + +E G + RQGD G +Y + +G + S +D + G+ ++L
Sbjct: 47 GYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGESIL 106
Query: 59 YNMPRAATIKATSTGSLWAMDRKTF 83
N PR ATI + L ++++ F
Sbjct: 107 DNTPRHATIVTRESSELLRIEQEDF 131
>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti
[TaxId: 381]}
Length = 133
Score = 39.4 bits (91), Expect = 6e-06
Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYN 60
+ + V AG ++ R G+ GD + + G + E + +
Sbjct: 34 LRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNPVELGPGAFFGEMALI------SG 87
Query: 61 MPRAATIKATSTGSLWAMDRKTF 83
PR+AT+ A +T SL ++ F
Sbjct: 88 EPRSATVSAATTVSLLSLHSADF 110
>d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator
TM1171, N-terminal domain {Thermotoga maritima [TaxId:
2336]}
Length = 129
Score = 38.8 bits (89), Expect = 1e-05
Identities = 10/85 (11%), Positives = 25/85 (29%), Gaps = 2/85 (2%)
Query: 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAY-EDKGSFGELALLY 59
G+IV Q D + ++ G + + L + +
Sbjct: 10 GKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFS 69
Query: 60 NMP-RAATIKATSTGSLWAMDRKTF 83
+ P + A + ++ ++ F
Sbjct: 70 SEPRFPVNVVAGENSKILSIPKEVF 94
>d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK
{Desulfitobacterium hafniense [TaxId: 49338]}
Length = 139
Score = 28.9 bits (63), Expect = 0.047
Identities = 7/52 (13%), Positives = 17/52 (32%)
Query: 1 MFEKPVEAGDIVIRQGDDGDFFYVIESGRYEASVEIDGEDKLMHAYEDKGSF 52
+ G VI G++ + G+ + + + + + Y S
Sbjct: 24 GLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSL 75
>d1h9ma2 b.40.6.2 (A:74-141) Cytoplasmic molybdate-binding protein
ModG {Azotobacter vinelandii [TaxId: 354]}
Length = 68
Score = 25.8 bits (57), Expect = 0.34
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 25 IESGRYEASVEID-GEDKLMHAYEDKGSFGELALLYNMPRAATIKATS 71
IE+G A V + + + K + EL L +A IKA++
Sbjct: 15 IETGAVNAEVTLALQGGTEITSMVTKEAVAELGLKPGASASAVIKASN 62
>d1fr3a_ b.40.6.1 (A:) Molybdate/tungstate binding protein MOP
{Sporomusa ovata [TaxId: 2378]}
Length = 67
Score = 25.0 bits (55), Expect = 0.64
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 25 IESGRYEASVEIDGEDKLMHAYEDKGSFGELALLYNMPRAATIKATS 71
I G A + +D + + A S +L L+ A +KAT
Sbjct: 16 IVKGTVMAKIVMDYKGTELVAAITIDSVADLDLVPGDKVTALVKATE 62
>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal
domain {Rhodospirillum rubrum [TaxId: 1085]}
Length = 132
Score = 25.0 bits (53), Expect = 1.4
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 1 MFEKPVEAGDIVIRQGDDGDFFYVIESG 28
K G +V D + +V+ G
Sbjct: 22 FRSKIHAKGSLVCTGEGDENGVFVVVDG 49
>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase
{Acinetobacter calcoaceticus [TaxId: 471]}
Length = 450
Score = 23.1 bits (48), Expect = 6.5
Identities = 4/17 (23%), Positives = 7/17 (41%)
Query: 13 IRQGDDGDFFYVIESGR 29
+ DG+ YV+
Sbjct: 410 VIASPDGNVLYVLTDTA 426
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.407
Gapped
Lambda K H
0.267 0.0416 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 329,061
Number of extensions: 12742
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 19
Length of query: 87
Length of database: 2,407,596
Length adjustment: 52
Effective length of query: 35
Effective length of database: 1,693,636
Effective search space: 59277260
Effective search space used: 59277260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)