BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5058
(377 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ET6|B Chain B, The Crystal Structure Of The Catalytic Domain Of A
Eukaryotic Guanylate Cyclase
Length = 190
Score = 154 bits (388), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 89/177 (50%), Positives = 111/177 (62%), Gaps = 16/177 (9%)
Query: 204 PAEYYEAVTVYFSDIVGFTEIAAVSTPLEVVNFLNSIYKLFDARIEGY-DVYKVETIGDS 262
PA+ + TV FSDIVGFTEIA+ S+PLEV + L+ +Y+ FDA IE Y +YKVETIGD+
Sbjct: 3 PAQEHPEATVLFSDIVGFTEIASRSSPLEVXSLLDELYQRFDAAIEEYPQLYKVETIGDA 62
Query: 263 YMVASGLPMKNGDKHVSEIATMALDL------LAGSIMFPIPHRKNERVQIRSGMHTGPV 316
YMV + + D H + AL + +A S+ E V+IR GMH+GPV
Sbjct: 63 YMVVCNVTVPC-DDHADVLLEFALRMHEEASRVASSL--------GEPVRIRVGMHSGPV 113
Query: 317 VAGIVGTKMPRYCLFGDTVNTASRMESTGEALKIHISAEVKEALDVIGGFRTEHRGS 373
VAG+VG KMPR+ LFGDTVNTASRMES GEA +IHIS L F RG+
Sbjct: 114 VAGVVGRKMPRFXLFGDTVNTASRMESHGEAGQIHISEACYXCLRSKERFEIRERGN 170
>pdb|3ET6|A Chain A, The Crystal Structure Of The Catalytic Domain Of A
Eukaryotic Guanylate Cyclase
Length = 190
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 89/177 (50%), Positives = 111/177 (62%), Gaps = 16/177 (9%)
Query: 204 PAEYYEAVTVYFSDIVGFTEIAAVSTPLEVVNFLNSIYKLFDARIEGY-DVYKVETIGDS 262
PA+ + TV FSDIVGFTEIA+ S+PLEV + L+ +Y+ FDA IE Y +YKVETIGD+
Sbjct: 3 PAQEHPEATVLFSDIVGFTEIASRSSPLEVXSLLDELYQRFDAAIEEYPQLYKVETIGDA 62
Query: 263 YMVASGLPMKNGDKHVSEIATMALDL------LAGSIMFPIPHRKNERVQIRSGMHTGPV 316
YMV + + D H + AL + +A S+ E V+IR GMH+GPV
Sbjct: 63 YMVVCNVTVPC-DDHADVLLEFALRMHEEASRVASSL--------GEPVRIRVGMHSGPV 113
Query: 317 VAGIVGTKMPRYCLFGDTVNTASRMESTGEALKIHISAEVKEALDVIGGFRTEHRGS 373
VAG+VG KMPR+ LFGDTVNTASRMES GEA +IHIS L F RG+
Sbjct: 114 VAGVVGRKMPRFXLFGDTVNTASRMESHGEAGQIHISEACYCCLRSKERFEIRERGN 170
>pdb|3UVJ|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1.
pdb|3UVJ|C Chain C, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1
Length = 225
Score = 145 bits (367), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 78/168 (46%), Positives = 103/168 (61%), Gaps = 3/168 (1%)
Query: 199 QTQQVPAEYYEAVTVYFSDIVGFTEIAAVSTPLEVVNFLNSIYKLFDARIEGYDVYKVET 258
Q Q V A+ + VT+ FSDIVGFT I + +PL+V+ LN++Y FD + DVYKVET
Sbjct: 3 QGQVVQAKKFSNVTMLFSDIVGFTAICSQCSPLQVITMLNALYTRFDQQCGELDVYKVET 62
Query: 259 IGDSYMVASGLPMKNGDKHVSEIATMALDLLAGSIMFPIPHRKNERVQIRSGMHTGPVVA 318
IGD+Y VA GL K D H +IA MAL ++ S PH E +++R G+H+G V A
Sbjct: 63 IGDAYCVAGGL-HKESDTHAVQIALMALKMMELSDEVMSPH--GEPIKMRIGLHSGSVFA 119
Query: 319 GIVGTKMPRYCLFGDTVNTASRMESTGEALKIHISAEVKEALDVIGGF 366
G+VG KMPRYCLFG+ V A++ ES KI++S L GF
Sbjct: 120 GVVGVKMPRYCLFGNNVTLANKFESCSVPRKINVSPTTYRLLKDCPGF 167
>pdb|2WZ1|A Chain A, Structure Of The Catalytic Domain Of Human Soluble
Guanylate Cyclase 1 Beta 3.
pdb|2WZ1|B Chain B, Structure Of The Catalytic Domain Of Human Soluble
Guanylate Cyclase 1 Beta 3
Length = 219
Score = 132 bits (332), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/183 (43%), Positives = 105/183 (57%), Gaps = 19/183 (10%)
Query: 203 VPAEYYEAVTVYFSDIVGF----TEIAAVSTPLEVVNFLNSIYKLFDARIEGYD---VYK 255
VPA+ Y+ VT+ FS IVGF ++ A+ +++VN LN +Y FD + VYK
Sbjct: 5 VPAKRYDNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPFVYK 64
Query: 256 VETIGDSYMVASGLPMKNGDKHVSEIATMALDLL--AGSIMFPIPHRKNERVQIRSGMHT 313
VET+GD YM SGLP + H I +ALD++ AG + E VQI G+HT
Sbjct: 65 VETVGDKYMTVSGLP-EPCIHHARSICHLALDMMEIAGQVQV-----DGESVQITIGIHT 118
Query: 314 GPVVAGIVGTKMPRYCLFGDTVNTASRMESTGEALKIHISAEVKEAL----DVIGGFRTE 369
G VV G++G +MPRYCLFG+TVN SR E+TGE KI++S L + F E
Sbjct: 119 GEVVTGVIGQRMPRYCLFGNTVNLTSRTETTGEKGKINVSEYTYRCLMSPENSDPQFHLE 178
Query: 370 HRG 372
HRG
Sbjct: 179 HRG 181
>pdb|1YK9|A Chain A, Crystal Structure Of A Mutant Form Of The Mycobacterial
Adenylyl Cyclase Rv1625c
Length = 204
Score = 131 bits (329), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 97/156 (62%), Gaps = 3/156 (1%)
Query: 205 AEYYEAVTVYFSDIVGFTEIAAVSTPLEVVNFLNSIYKLFDARIEGYDVYKVETIGDSYM 264
A+ Y+ +V F+DIVGFTE A+ + P ++V FL+ +Y FD ++ + + K+E GDSYM
Sbjct: 5 ADKYDEASVLFADIVGFTERASSTAPADLVRFLDRLYSAFDELVDQHGLEKIEVSGDSYM 64
Query: 265 VASGLPMKNGDKHVSEIATMALDLLAGSIMFPIPHRKNERVQIRSGMHTGPVVAGIVGTK 324
V SG+P D H +A ALD+ + P + V +R G+ TGPVVAG+VG++
Sbjct: 65 VVSGVPRPRPD-HTQALADFALDMTNVAAQLKDP--RGNPVPLRVGLATGPVVAGVVGSR 121
Query: 325 MPRYCLFGDTVNTASRMESTGEALKIHISAEVKEAL 360
RYC++GD VN ASRMEST +I + EV E L
Sbjct: 122 RFRYCVWGDAVNVASRMESTDSVGQIQVPDEVYERL 157
>pdb|3UVJ|B Chain B, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1.
pdb|3UVJ|D Chain D, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1
Length = 220
Score = 125 bits (313), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 77/183 (42%), Positives = 103/183 (56%), Gaps = 19/183 (10%)
Query: 203 VPAEYYEAVTVYFSDIVGF----TEIAAVSTPLEVVNFLNSIYKLFDARIEGYD---VYK 255
VPA+ Y+ VT+ FS IVGF ++ A+ +++VN LN +Y FD + VYK
Sbjct: 6 VPAKRYDNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPFVYK 65
Query: 256 VETIGDSYMVASGLPMKNGDKHVSEIATMALDLL--AGSIMFPIPHRKNERVQIRSGMHT 313
VET+ D YM SGLP + H I +ALD++ AG + E VQI G+HT
Sbjct: 66 VETVCDKYMTVSGLP-EPCIHHARSICHLALDMMEIAGQVQV-----DGESVQITIGIHT 119
Query: 314 GPVVAGIVGTKMPRYCLFGDTVNTASRMESTGEALKIHISAEVKEAL----DVIGGFRTE 369
G VV G++G +MPRY LFG+TVN SR E+TGE KI++S L + F E
Sbjct: 120 GEVVTGVIGQRMPRYSLFGNTVNLTSRTETTGEKGKINVSEYTYRCLMSPENSDPQFHLE 179
Query: 370 HRG 372
HRG
Sbjct: 180 HRG 182
>pdb|1AB8|A Chain A, Rat Type Ii Adenylyl Cyclase C2 DomainFORSKOLIN COMPLEX
pdb|1AB8|B Chain B, Rat Type Ii Adenylyl Cyclase C2 DomainFORSKOLIN COMPLEX
Length = 220
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 97/190 (51%), Gaps = 18/190 (9%)
Query: 199 QTQQVPAEYYEAVTVYFSDIVGFTEIAAVST----PLEVVNFLNSIYKLFD---ARIEGY 251
+ +++ + Y+ V V F+ I F E S LE + LN I FD ++ +
Sbjct: 3 KNEELYHQSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFS 62
Query: 252 DVYKVETIGDSYMVASGLPMKNGDKHVSE-------IATMA--LDLLAGSIMFPIPHRKN 302
V K++TIG +YM A+GL +H E I TM L G + H N
Sbjct: 63 GVEKIKTIGSTYMAATGLSAIPSQEHAQEPERQYMHIGTMVEFAYALVGKLDAINKHSFN 122
Query: 303 ERVQIRSGMHTGPVVAGIVGTKMPRYCLFGDTVNTASRMESTGEALKIHISAEVKEALDV 362
+ ++R G++ GPV+AG++G + P+Y ++G+TVN ASRM+STG KI ++ E L
Sbjct: 123 D-FKLRVGINHGPVIAGVIGAQKPQYDIWGNTVNVASRMDSTGVLDKIQVTEETSLILQT 181
Query: 363 IGGFRTEHRG 372
+ G+ RG
Sbjct: 182 L-GYTCTCRG 190
>pdb|1AZS|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1CJK|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1CS4|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1TL7|B Chain B, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
pdb|1U0H|B Chain B, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|B Chain B, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|B Chain B, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3C14|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
pdb|3G82|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|B Chain B, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 212
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 94/182 (51%), Gaps = 17/182 (9%)
Query: 199 QTQQVPAEYYEAVTVYFSDIVGFTEIAAVST----PLEVVNFLNSIYKLFD---ARIEGY 251
+ +++ + Y+ V V F+ I F E S LE + LN I FD ++ +
Sbjct: 4 KNEELYHQSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFS 63
Query: 252 DVYKVETIGDSYMVASGLPMKNGDKHVSE-------IATMA--LDLLAGSIMFPIPHRKN 302
V K++TIG +YM A+GL +H E I TM L G + H N
Sbjct: 64 GVEKIKTIGSTYMAATGLSAIPSQEHAQEPERQYMHIGTMVEFAYALVGKLDAINKHSFN 123
Query: 303 ERVQIRSGMHTGPVVAGIVGTKMPRYCLFGDTVNTASRMESTGEALKIHISAEVKEALDV 362
+ ++R G++ GPV+AG++G + P+Y ++G+TVN ASRM+STG KI ++ E L
Sbjct: 124 D-FKLRVGINHGPVIAGVIGAQKPQYDIWGNTVNVASRMDSTGVLDKIQVTEETSLILQT 182
Query: 363 IG 364
+G
Sbjct: 183 LG 184
>pdb|1CUL|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 208
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 92/181 (50%), Gaps = 18/181 (9%)
Query: 208 YEAVTVYFSDIVGFTEIAAVST----PLEVVNFLNSIYKLFD---ARIEGYDVYKVETIG 260
Y+ V V F+ I F E S LE + LN I FD ++ + V K++TIG
Sbjct: 9 YDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSGVEKIKTIG 68
Query: 261 DSYMVASGLPMKNGDKHVSE-------IATMA--LDLLAGSIMFPIPHRKNERVQIRSGM 311
+YM A+GL +H E I TM L G + H N+ ++R G+
Sbjct: 69 STYMAATGLSAIPSQEHAQEPERQYMHIGTMVEFAYALVGKLDAINKHSFND-FKLRVGI 127
Query: 312 HTGPVVAGIVGTKMPRYCLFGDTVNTASRMESTGEALKIHISAEVKEALDVIGGFRTEHR 371
+ GPV+AG++G + P+Y ++G+TVN ASRM+STG KI ++ E L + G+ R
Sbjct: 128 NHGPVIAGVIGAQKPQYDIWGNTVNVASRMDSTGVLDKIQVTEETSLILQTL-GYTCTCR 186
Query: 372 G 372
G
Sbjct: 187 G 187
>pdb|1AZS|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
Length = 220
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 81/153 (52%), Gaps = 3/153 (1%)
Query: 201 QQVPAEYYEAVTVYFSDIVGFTEIAAVSTPLEVVNFLNSIYKLFDARIEGYDVYKVETIG 260
++ + ++ V++ F+DI GFT +A+ T E+V LN ++ FD +++ +G
Sbjct: 25 HKIYIQKHDNVSILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILG 84
Query: 261 DSYMVASGLPMKNGDKHVSEIATMALDLLAGSIMFPIPHRKNERVQIRSGMHTGPVVAGI 320
D Y SGLP D H M +D++ + + V +R G+H+G V G+
Sbjct: 85 DCYYCVSGLPEARAD-HAHCCVEMGMDMIEAISL--VREMTGVNVNMRVGIHSGRVHCGV 141
Query: 321 VGTKMPRYCLFGDTVNTASRMESTGEALKIHIS 353
+G + ++ ++ + V A+ ME+ G+A +IHI+
Sbjct: 142 LGLRKWQFDVWSNDVTLANHMEAGGKAGRIHIT 174
>pdb|1CS4|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|A Chain A, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|A Chain A, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|A Chain A, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3C14|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
pdb|3G82|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|A Chain A, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 225
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 81/153 (52%), Gaps = 3/153 (1%)
Query: 201 QQVPAEYYEAVTVYFSDIVGFTEIAAVSTPLEVVNFLNSIYKLFDARIEGYDVYKVETIG 260
++ + ++ V++ F+DI GFT +A+ T E+V LN ++ FD +++ +G
Sbjct: 25 HKIYIQKHDNVSILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILG 84
Query: 261 DSYMVASGLPMKNGDKHVSEIATMALDLLAGSIMFPIPHRKNERVQIRSGMHTGPVVAGI 320
D Y SGLP D H M +D++ + + V +R G+H+G V G+
Sbjct: 85 DCYYCVSGLPEARAD-HAHCCVEMGMDMIEAISL--VREMTGVNVNMRVGIHSGRVHCGV 141
Query: 321 VGTKMPRYCLFGDTVNTASRMESTGEALKIHIS 353
+G + ++ ++ + V A+ ME+ G+A +IHI+
Sbjct: 142 LGLRKWQFDVWSNDVTLANHMEAGGKAGRIHIT 174
>pdb|1CJK|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1CUL|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
pdb|1TL7|A Chain A, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 217
Score = 81.3 bits (199), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 81/153 (52%), Gaps = 3/153 (1%)
Query: 201 QQVPAEYYEAVTVYFSDIVGFTEIAAVSTPLEVVNFLNSIYKLFDARIEGYDVYKVETIG 260
++ + ++ V++ F+DI GFT +A+ T E+V LN ++ FD +++ +G
Sbjct: 17 HKIYIQKHDNVSILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILG 76
Query: 261 DSYMVASGLPMKNGDKHVSEIATMALDLLAGSIMFPIPHRKNERVQIRSGMHTGPVVAGI 320
D Y SGLP D H M +D++ + + V +R G+H+G V G+
Sbjct: 77 DCYYCVSGLPEARAD-HAHCCVEMGMDMIEAISL--VREMTGVNVNMRVGIHSGRVHCGV 133
Query: 321 VGTKMPRYCLFGDTVNTASRMESTGEALKIHIS 353
+G + ++ ++ + V A+ ME+ G+A +IHI+
Sbjct: 134 LGLRKWQFDVWSNDVTLANHMEAGGKAGRIHIT 166
>pdb|3R5G|A Chain A, Crystal Structure Of The Adenylyl Cyclase Cyab From P.
Aeruginosa
pdb|3R5G|B Chain B, Crystal Structure Of The Adenylyl Cyclase Cyab From P.
Aeruginosa
Length = 198
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 77/165 (46%), Gaps = 14/165 (8%)
Query: 209 EAVTVYFSDIVGFTEIAAVSTPLEVVNFLNSIYKLFDARIEGYDVYKVETIGDSYMVASG 268
+ +TV+FSDI GFTE++ + + LN+ Y + +GD MV G
Sbjct: 8 KKLTVFFSDIRGFTELSEELEAEALTDLLNNYLNEMSKIALKYGGTIDKFVGDCVMVFFG 67
Query: 269 LPMKNGDKHVSEIATMALDLLAGSIMFPIPHRKNERVQ-------IRSGMHTGPVVAGIV 321
P G K +A +++ + M + R+ R Q IR G++TG G
Sbjct: 68 DPSTQGAKK-DAVAAVSMGIAMRKHMKVL--RQQWRAQGITKPLEIRMGINTGYCTVGNF 124
Query: 322 G--TKMPRYCLFGDTVNTASRMESTGEALKIHISAEVKEAL-DVI 363
G T+M Y + G VN ASR+ES EA +I IS E + DVI
Sbjct: 125 GADTRMD-YTIIGREVNLASRLESASEAGEILISHETYSLIKDVI 168
>pdb|2W01|A Chain A, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|B Chain B, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|C Chain C, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|D Chain D, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|E Chain E, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|F Chain F, Crystal Structure Of The Guanylyl Cyclase Cya2
Length = 208
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 2/151 (1%)
Query: 211 VTVYFSDIVGFTEIAAVSTPLEVVNFLNSIYKLFDARIEGYDVYKVETIGDSYMVASGLP 270
+T+ SD+ GFT + P EVV LN + I + E +GD +V G P
Sbjct: 15 ITILTSDLRGFTSTSEGLNPEEVVKVLNIYFGKMADVITHHGGTIDEFMGDGILVLFGAP 74
Query: 271 MKNGDKHVSEIAT-MALDLLAGSIMFPIPHRKNERVQIRSGMHTGPVVAGIVGT-KMPRY 328
D + +A + + L + + + +++ G++TG VV G +G+ K +Y
Sbjct: 75 TSQQDDALRAVACGVEMQLALREVNQQVTGLGLQPLEMGIGINTGEVVVGNIGSEKRTKY 134
Query: 329 CLFGDTVNTASRMESTGEALKIHISAEVKEA 359
+ G VN R+ES +I IS+ EA
Sbjct: 135 GVVGAQVNLTYRIESYTTGGQIFISSTTLEA 165
>pdb|1FX2|A Chain A, Structural Analysis Of Adenylate Cyclases From Trypanosoma
Brucei In Their Monomeric State
Length = 235
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 90/197 (45%), Gaps = 40/197 (20%)
Query: 202 QVPAEYYEAVTVYFSDIVGFTEIAAVSTPLEVVNFLNSIYKLFDARIEGYDVYKVETIGD 261
+ P E + VT+ F+DI T + A L + + + + +++ + I Y Y+V+T+GD
Sbjct: 4 RAPKEPTDPVTLIFTDIESSTALWAAHPDL-MPDAVAAHHRMVRSLIGRYKCYEVKTVGD 62
Query: 262 SYMVASGLP---------MKNGDKHVSEIATMALD---------LLAGSIMF--PIPHRK 301
S+M+AS P ++ H + T ALD G + P H
Sbjct: 63 SFMIASKSPFAAVQLAQELQLCFLH-HDWGTNALDDSYREFEEQRAEGECEYTPPTAHMD 121
Query: 302 NE-------RVQIRSGMHTGPVVAGIVGTKMPR-YCLFGDTVNTASRMEST---GEALKI 350
E +++R G+HTG + I ++ + Y +G T N A+R ES G+ L
Sbjct: 122 PEVYSRLWNGLRVRVGIHTG--LCDIRHDEVTKGYDYYGRTPNMAARTESVANGGQVLMT 179
Query: 351 H-----ISAEVKEALDV 362
H +SAE ++ +DV
Sbjct: 180 HAAYMSLSAEDRKQIDV 196
>pdb|1WC0|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp
pdb|1WC0|B Chain B, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp
pdb|1WC3|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp And Strontium
pdb|1WC3|B Chain B, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp And Strontium
pdb|1WC4|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp And Europium
pdb|1WC4|B Chain B, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp And Europium
pdb|1WC5|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp In Presence Of Bicarbonate
pdb|1WC5|B Chain B, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp In Presence Of Bicarbonate
pdb|1WC5|C Chain C, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp In Presence Of Bicarbonate
pdb|1WC5|D Chain D, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp In Presence Of Bicarbonate
pdb|2BW7|A Chain A, A Novel Mechanism For Adenylyl Cyclase Inhibition From The
Crystal Structure Of Its Complex With Catechol Estrogen
pdb|2BW7|B Chain B, A Novel Mechanism For Adenylyl Cyclase Inhibition From The
Crystal Structure Of Its Complex With Catechol Estrogen
pdb|2BW7|C Chain C, A Novel Mechanism For Adenylyl Cyclase Inhibition From The
Crystal Structure Of Its Complex With Catechol Estrogen
pdb|2BW7|D Chain D, A Novel Mechanism For Adenylyl Cyclase Inhibition From The
Crystal Structure Of Its Complex With Catechol Estrogen
Length = 219
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 12/159 (7%)
Query: 211 VTVYFSDIVGFTEIAAVSTPLEVVNFLNS-IYKLFDARIEGYDVYKVETIGDSYMVASGL 269
+T+ FSDIVGFT ++ V LN + ++ A E + +GD+ M G
Sbjct: 28 ITILFSDIVGFTRMSNALQSQGVAELLNEYLGEMTRAVFENQGTVD-KFVGDAIMALYGA 86
Query: 270 P--MKNGDKHVSEIAT-----MALDLLAGSIMFPIPHRKNE--RVQIRSGMHTGPVVAGI 320
P M ++ IAT +AL+ L +NE V+ R G+H G V G+
Sbjct: 87 PEEMSPSEQVRRAIATARQMLVALEKLNQGWQERGLVGRNEVPPVRFRCGIHQGMAVVGL 146
Query: 321 VGTK-MPRYCLFGDTVNTASRMESTGEALKIHISAEVKE 358
G++ + G +VN A+R++ I +SA V +
Sbjct: 147 FGSQERSDFTAIGPSVNIAARLQEATAPNSIMVSAMVAQ 185
>pdb|1WC1|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Rp-atpalphas
pdb|1WC1|B Chain B, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Rp-atpalphas
pdb|1WC1|C Chain C, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Rp-atpalphas
pdb|1WC6|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Rp-atpalphas In Presence Of Bicarbonate
pdb|1WC6|B Chain B, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Rp-atpalphas In Presence Of Bicarbonate
pdb|1WC6|C Chain C, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Rp-atpalphas In Presence Of Bicarbonate
Length = 226
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 12/159 (7%)
Query: 211 VTVYFSDIVGFTEIAAVSTPLEVVNFLNS-IYKLFDARIEGYDVYKVETIGDSYMVASGL 269
+T+ FSDIVGFT ++ V LN + ++ A E + +GD+ M G
Sbjct: 35 ITILFSDIVGFTRMSNALQSQGVAELLNEYLGEMTRAVFENQGTVD-KFVGDAIMALYGA 93
Query: 270 P--MKNGDKHVSEIAT-----MALDLLAGSIMFPIPHRKNE--RVQIRSGMHTGPVVAGI 320
P M ++ IAT +AL+ L +NE V+ R G+H G V G+
Sbjct: 94 PEEMSPSEQVRRAIATARQMLVALEKLNQGWQERGLVGRNEVPPVRFRCGIHQGMAVVGL 153
Query: 321 VGTK-MPRYCLFGDTVNTASRMESTGEALKIHISAEVKE 358
G++ + G +VN A+R++ I +SA V +
Sbjct: 154 FGSQERSDFTAIGPSVNIAARLQEATAPNSIMVSAMVAQ 192
>pdb|1FX4|A Chain A, Structure Analysis Of Adenylate Cyclases From Trypanosoma
Brucei In Their Monomeric State
Length = 231
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 83/194 (42%), Gaps = 38/194 (19%)
Query: 204 PAEYYEAVTVYFSDIVGFTEIAAVSTPLEVVNFLNSIYKLFDARIEGYDVYKVETIGDSY 263
P E VT+ F+DI T + A L + + + + ++L + I Y+ Y+V+T+GDS+
Sbjct: 6 PKEPTGPVTLIFTDIESSTALWAAHPDL-MPDAVATHHRLIRSLITRYECYEVKTVGDSF 64
Query: 264 MVASGLPMKNGD-KHVSEIATMALDL----------------LAGSIMFPIP-------- 298
M+AS P ++ + LD G + P
Sbjct: 65 MIASKSPFAAVQLAQELQLCFLRLDWETNAVDESYREFEEQRAEGECEYTPPTASLDPEV 124
Query: 299 -HRKNERVQIRSGMHTGPVVAGIVGTKMPR-YCLFGDTVNTASRMEST---GEALKIH-- 351
R +++R G+HTG + I ++ + Y +G T N A+R ES G+ L H
Sbjct: 125 YSRLWNGLRVRVGIHTG--LCDIRYDEVTKGYDYYGRTSNMAARTESVANGGQVLMTHAA 182
Query: 352 ---ISAEVKEALDV 362
+S E + LDV
Sbjct: 183 YMSLSGEDRNQLDV 196
>pdb|1Y10|A Chain A, Mycobacterial Adenylyl Cyclase Rv1264, Holoenzyme,
Inhibited State
pdb|1Y10|B Chain B, Mycobacterial Adenylyl Cyclase Rv1264, Holoenzyme,
Inhibited State
pdb|1Y10|C Chain C, Mycobacterial Adenylyl Cyclase Rv1264, Holoenzyme,
Inhibited State
pdb|1Y10|D Chain D, Mycobacterial Adenylyl Cyclase Rv1264, Holoenzyme,
Inhibited State
pdb|1Y11|A Chain A, Mycobacterial Adenylyl Cyclase Rv1264, Holoenzyme, Active
State
Length = 407
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 24/151 (15%)
Query: 211 VTVYFSDIVGFTEIAAVSTPLEVVNFLNSIYKLFDAR-IEGYDVYKVETIGDSYMVASGL 269
VTV F+D+VGFT++ V + E+ + + L AR + V+ ++TIGD+ M+
Sbjct: 216 VTVAFADLVGFTQLGEVVSAEELGHLAGRLAGL--ARDLTAPPVWFIKTIGDAVMLVCPD 273
Query: 270 PMKNGDKHVSEIATMALDLLAGSIMFPIPHRKNERVQIRSGMHTGPVVAGIVGTKMPRYC 329
P D + + + D N ++R+G+ +G V ++ +
Sbjct: 274 PAPLLDTVLKLVEVVDTD--------------NNFPRLRAGVASGMAV-----SRAGDW- 313
Query: 330 LFGDTVNTASRMESTGEALKIHISAEVKEAL 360
FG VN ASR+ + ++ V+EAL
Sbjct: 314 -FGSPVNVASRVTGVARPGAVLVADSVREAL 343
>pdb|3MR7|A Chain A, Crystal Structure Of AdenylateGUANYLATE CYCLASEHYDROLASE
FROM Silicibacter Pomeroyi
pdb|3MR7|B Chain B, Crystal Structure Of AdenylateGUANYLATE CYCLASEHYDROLASE
FROM Silicibacter Pomeroyi
pdb|3MR7|C Chain C, Crystal Structure Of AdenylateGUANYLATE CYCLASEHYDROLASE
FROM Silicibacter Pomeroyi
Length = 189
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 301 KNERVQIRSGMHTGPVVAGIVGTKMPRYCLFGDTVNTASRMESTGEALKIHIS 353
+ ER+Q R G++ G +V + +FGD VN A+R+E+ E I +S
Sbjct: 90 RKERIQYRIGINIGDIV-------LEDGDIFGDAVNVAARLEAISEPGAICVS 135
>pdb|3HLS|A Chain A, Crystal Structure Of The Signaling Helix Coiled-Coil
Doimain Of The Beta-1 Subunit Of The Soluble Guanylyl
Cyclase
pdb|3HLS|B Chain B, Crystal Structure Of The Signaling Helix Coiled-Coil
Doimain Of The Beta-1 Subunit Of The Soluble Guanylyl
Cyclase
pdb|3HLS|C Chain C, Crystal Structure Of The Signaling Helix Coiled-Coil
Doimain Of The Beta-1 Subunit Of The Soluble Guanylyl
Cyclase
pdb|3HLS|D Chain D, Crystal Structure Of The Signaling Helix Coiled-Coil
Doimain Of The Beta-1 Subunit Of The Soluble Guanylyl
Cyclase
pdb|3HLS|E Chain E, Crystal Structure Of The Signaling Helix Coiled-Coil
Doimain Of The Beta-1 Subunit Of The Soluble Guanylyl
Cyclase
pdb|3HLS|F Chain F, Crystal Structure Of The Signaling Helix Coiled-Coil
Doimain Of The Beta-1 Subunit Of The Soluble Guanylyl
Cyclase
pdb|3HLS|G Chain G, Crystal Structure Of The Signaling Helix Coiled-Coil
Doimain Of The Beta-1 Subunit Of The Soluble Guanylyl
Cyclase
pdb|3HLS|H Chain H, Crystal Structure Of The Signaling Helix Coiled-Coil
Doimain Of The Beta-1 Subunit Of The Soluble Guanylyl
Cyclase
Length = 66
Score = 33.1 bits (74), Expect = 0.29, Method: Composition-based stats.
Identities = 15/26 (57%), Positives = 20/26 (76%)
Query: 174 LKREKHKSDTLLVQMLPPSVAMQLKQ 199
L+ EK K+DTLL +LPPSVA +L+
Sbjct: 40 LEDEKKKTDTLLYSVLPPSVANELRH 65
>pdb|1VDR|A Chain A, Dihydrofolate Reductase
pdb|1VDR|B Chain B, Dihydrofolate Reductase
Length = 162
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 31/75 (41%)
Query: 295 FPIPHRKNERVQIRSGMHTGPVVAGIVGTKMPRYCLFGDTVNTASRMESTGEALKIHISA 354
P P ++ Q RS + PVV G + R L G SR E + H +A
Sbjct: 21 LPWPSIPADKKQYRSRIADDPVVLGRTTFESMRDDLPGSAQIVMSRSERSFSVDTAHRAA 80
Query: 355 EVKEALDVIGGFRTE 369
V+EA+D+ E
Sbjct: 81 SVEEAVDIAASLDAE 95
>pdb|2JYB|A Chain A, Binary Hvdhfr1:folate Complex
pdb|2ITH|A Chain A, Nmr Structure Of Haloferax Volcanii Dhfr
Length = 162
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 31/75 (41%)
Query: 295 FPIPHRKNERVQIRSGMHTGPVVAGIVGTKMPRYCLFGDTVNTASRMESTGEALKIHISA 354
P P ++ Q RS + PVV G + R L G SR E + H +A
Sbjct: 21 LPWPSIPADKKQYRSRVADDPVVLGRTTFESMRDDLPGSAQIVMSRSERSFSVDTAHRAA 80
Query: 355 EVKEALDVIGGFRTE 369
V+EA+D+ E
Sbjct: 81 SVEEAVDIAASLDAE 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,988,776
Number of Sequences: 62578
Number of extensions: 374939
Number of successful extensions: 1019
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 979
Number of HSP's gapped (non-prelim): 25
length of query: 377
length of database: 14,973,337
effective HSP length: 100
effective length of query: 277
effective length of database: 8,715,537
effective search space: 2414203749
effective search space used: 2414203749
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)