Query psy5058
Match_columns 377
No_of_seqs 275 out of 1743
Neff 7.1
Searched_HMMs 46136
Date Sat Aug 17 00:38:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5058.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5058hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4171|consensus 100.0 1.8E-44 3.9E-49 368.9 24.4 214 162-377 394-607 (671)
2 KOG1023|consensus 100.0 7.6E-38 1.6E-42 316.6 15.4 223 154-377 236-462 (484)
3 smart00044 CYCc Adenylyl- / gu 100.0 1.5E-35 3.3E-40 268.8 21.6 185 177-362 2-187 (194)
4 PF00211 Guanylate_cyc: Adenyl 100.0 8.3E-35 1.8E-39 261.3 14.4 170 205-377 3-172 (184)
5 COG2114 CyaA Adenylate cyclase 100.0 4.7E-31 1E-35 246.3 20.9 183 179-377 19-202 (227)
6 KOG3619|consensus 100.0 1.3E-31 2.8E-36 283.8 18.8 201 166-371 54-268 (867)
7 KOG3618|consensus 100.0 6.7E-31 1.5E-35 267.8 15.5 195 171-370 268-495 (1318)
8 cd07302 CHD cyclase homology d 100.0 1.2E-29 2.7E-34 223.6 19.8 166 210-377 1-166 (177)
9 KOG3619|consensus 100.0 2.7E-29 5.9E-34 266.1 19.5 210 165-377 601-830 (867)
10 KOG3618|consensus 99.9 2.4E-27 5.2E-32 242.0 7.3 204 170-377 1044-1258(1318)
11 cd07556 Nucleotidyl_cyc_III Cl 99.4 2.1E-11 4.5E-16 102.0 15.7 132 211-351 2-133 (133)
12 PRK10245 adrA diguanylate cycl 95.8 2.4 5.3E-05 42.3 21.6 97 209-312 235-331 (366)
13 PF05165 GGDN: GGDN family; I 95.6 0.18 3.9E-06 47.5 11.5 61 208-268 125-186 (246)
14 PRK09966 putative inner membra 95.5 1.3 2.8E-05 44.4 18.4 59 209-268 277-335 (407)
15 PRK11059 regulatory protein Cs 94.9 3.4 7.3E-05 44.4 20.5 98 210-313 259-357 (640)
16 PF07701 HNOBA: Heme NO bindin 94.7 0.18 4E-06 46.9 8.7 36 162-197 184-219 (219)
17 PRK15426 putative diguanylate 94.3 1.8 3.9E-05 45.4 16.4 78 209-293 428-505 (570)
18 smart00267 GGDEF diguanylate c 94.0 1.2 2.6E-05 37.1 11.8 58 210-268 34-91 (163)
19 PF00990 GGDEF: GGDEF domain; 93.4 0.59 1.3E-05 39.2 8.9 81 209-293 31-111 (161)
20 COG2429 Archaeal GTP cyclohydr 93.2 0.99 2.1E-05 42.0 10.4 61 209-269 130-191 (250)
21 cd01949 GGDEF Diguanylate-cycl 92.3 2.7 5.9E-05 34.6 11.5 59 209-268 30-88 (158)
22 PRK02240 GTP cyclohydrolase II 92.1 1.7 3.7E-05 41.2 10.6 60 208-267 132-193 (254)
23 PRK11829 biofilm formation reg 91.9 7.8 0.00017 41.5 17.1 78 210-293 262-339 (660)
24 COG2199 c-di-GMP synthetase (d 91.6 2.8 6.1E-05 36.8 11.2 97 209-312 50-146 (181)
25 PRK09894 diguanylate cyclase; 91.2 7.4 0.00016 36.8 14.4 59 209-268 157-215 (296)
26 TIGR00254 GGDEF diguanylate cy 90.7 4.8 0.0001 33.8 11.5 58 210-268 33-90 (165)
27 PRK13561 putative diguanylate 90.0 26 0.00056 37.5 18.7 58 209-267 257-314 (651)
28 TIGR02577 cas_TM1794_Crm2 CRIS 89.3 4.1 9E-05 42.4 11.6 119 208-346 341-481 (482)
29 COG3706 PleD Response regulato 86.5 7.5 0.00016 39.9 11.1 122 208-346 299-423 (435)
30 PF10851 DUF2652: Protein of u 86.1 10 0.00023 31.5 9.7 97 244-345 5-110 (116)
31 PRK02240 GTP cyclohydrolase II 82.3 11 0.00024 35.8 9.5 56 213-268 4-62 (254)
32 PF13974 YebO: YebO-like prote 80.7 7.4 0.00016 30.4 6.4 51 139-193 4-54 (80)
33 TIGR02578 cas_TM1811_Csm1 CRIS 79.6 19 0.00041 39.0 11.5 114 209-346 521-647 (648)
34 PRK11359 cyclic-di-GMP phospho 78.5 58 0.0013 35.4 15.1 59 209-268 402-460 (799)
35 PF08376 NIT: Nitrate and nitr 77.4 7.8 0.00017 35.6 6.9 48 72-119 197-245 (247)
36 PRK10060 RNase II stability mo 73.3 43 0.00092 36.2 12.2 77 209-292 265-341 (663)
37 PRK14538 putative bifunctional 71.8 26 0.00056 39.2 10.1 94 213-314 207-300 (838)
38 PRK09776 putative diguanylate 61.9 63 0.0014 36.6 11.1 79 209-294 695-773 (1092)
39 PRK09581 pleD response regulat 61.8 1.2E+02 0.0027 29.9 12.2 58 210-268 323-380 (457)
40 PF11294 DUF3095: Protein of u 61.7 59 0.0013 32.8 9.5 142 209-370 25-179 (373)
41 COG3887 Predicted signaling pr 46.6 4.1E+02 0.0088 28.7 21.3 124 213-354 177-300 (655)
42 TIGR02209 ftsL_broad cell divi 46.1 1.3E+02 0.0029 22.9 10.3 37 164-200 33-69 (85)
43 cd00446 GrpE GrpE is the adeni 35.9 2.7E+02 0.0058 23.5 8.6 32 230-261 61-92 (137)
44 PF06295 DUF1043: Protein of u 35.8 1.6E+02 0.0035 24.9 6.9 18 166-183 33-50 (128)
45 PRK11677 hypothetical protein; 35.7 1.6E+02 0.0035 25.3 6.9 17 140-156 7-23 (134)
46 PRK05423 hypothetical protein; 34.1 1.7E+02 0.0036 23.7 6.1 31 75-105 24-54 (104)
47 PF04999 FtsL: Cell division p 32.8 2.4E+02 0.0053 22.1 10.7 42 159-200 39-80 (97)
48 PF06295 DUF1043: Protein of u 30.9 1.5E+02 0.0032 25.1 5.9 15 142-156 5-19 (128)
49 PRK11677 hypothetical protein; 30.6 1.8E+02 0.0039 25.0 6.3 48 136-183 7-54 (134)
50 COG1353 Predicted CRISPR-assoc 30.4 2.3E+02 0.0049 31.7 8.7 116 208-346 519-656 (799)
51 PF05165 GGDN: GGDN family; I 29.5 4.5E+02 0.0097 25.0 9.3 54 215-268 3-59 (246)
52 PF04977 DivIC: Septum formati 28.2 2.4E+02 0.0052 20.8 6.2 36 163-198 25-61 (80)
53 PRK07353 F0F1 ATP synthase sub 26.4 3.9E+02 0.0084 22.4 8.2 34 152-185 26-59 (140)
54 PRK13453 F0F1 ATP synthase sub 26.0 4E+02 0.0088 23.5 8.1 18 154-171 41-58 (173)
55 PRK14475 F0F1 ATP synthase sub 24.2 4.4E+02 0.0094 23.1 7.9 31 154-184 33-63 (167)
56 PRK13460 F0F1 ATP synthase sub 24.1 4.8E+02 0.01 22.9 8.2 25 156-180 41-65 (173)
57 TIGR02976 phageshock_pspB phag 21.8 3.8E+02 0.0082 20.6 7.2 15 136-150 8-22 (75)
58 KOG1666|consensus 21.4 6.7E+02 0.015 23.4 11.5 51 20-74 35-86 (220)
59 PF12273 RCR: Chitin synthesis 21.1 1E+02 0.0022 25.9 3.1 10 133-142 2-11 (130)
60 PRK14839 undecaprenyl pyrophos 20.2 7.4E+02 0.016 23.4 9.2 82 209-314 55-138 (239)
No 1
>KOG4171|consensus
Probab=100.00 E-value=1.8e-44 Score=368.88 Aligned_cols=214 Identities=51% Similarity=0.765 Sum_probs=202.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHccCCCCCCceeeEEEEEEEcCCchhHhhhCChHHHHHHHHHHH
Q psy5058 162 MYAAHLAQKAHELKREKHKSDTLLVQMLPPSVAMQLKQTQQVPAEYYEAVTVYFSDIVGFTEIAAVSTPLEVVNFLNSIY 241 (377)
Q Consensus 162 ~~~~~l~~~~~~l~~ek~~~~~lL~~~lP~~v~~~L~~~~~~~~~~~~~vTVLF~DI~gFT~ls~~~~p~elv~lLn~~~ 241 (377)
.....+.+..++|+.||+|.+.||..++|++||++|..++.+.+.++.+|||||+||+|||.++..++|.+++.+||++|
T Consensus 394 ~~~~~Le~~~~~Le~EKkkTd~LLy~mlP~~VA~qLr~g~~v~a~~f~~vTilFsdIv~Ft~ic~~ctp~~vV~~LN~ly 473 (671)
T KOG4171|consen 394 KLKEKLEKMTRELEEEKKKTDTLLYSMLPRSVAQQLRQGESVDAKEFDDVTILFSDIVGFTAICSQCTPMQVVNMLNELY 473 (671)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhCCHHHHHHHHcCCCcCccccCceEEEEeccchHHhHhhccCcHHHHHHHHHHH
Confidence 33555666778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCeEEEEEeCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHhhccCCCCCCCCCceeEEEEeeeccEEEEEe
Q psy5058 242 KLFDARIEGYDVYKVETIGDSYMVASGLPMKNGDKHVSEIATMALDLLAGSIMFPIPHRKNERVQIRSGMHTGPVVAGIV 321 (377)
Q Consensus 242 ~~~~~ii~~~gG~~ik~iGD~~ma~fG~p~~~~d~~a~~a~~aAl~i~~~~~~~~~~~~~~~~l~irIGIhtG~vv~G~i 321 (377)
+.||+++.-|++||+.++||+||++.|+|...+. ||+.+|.+|+.|....+....+. .+.++.+|||||+|||++|+|
T Consensus 474 t~fD~~i~~~~VYKVETIGDaYm~vsG~P~~~~~-HAe~i~~~AL~Mm~~ak~v~~p~-~~~pi~iRiGIHsG~VvAGVV 551 (671)
T KOG4171|consen 474 TRFDRIIDTHDVYKVETIGDAYMVVSGLPDASDY-HAEHIADLALGMMEEAKEVVSPV-TGEPIQIRIGIHSGPVVAGVV 551 (671)
T ss_pred HHHHHhhcccCeEEEeeccchheeecCCCCCChh-HHHHHHHHHHHHHHHhhhhcCcC-CCCceEEEEEeccCCeeeeee
Confidence 9999999999999999999999999999999877 99999999999999888765443 578999999999999999999
Q ss_pred CCCCCcceeeCcHHHHHHHHHhcCCCCcEEeCHHHHHHhhccCCeeEEEcccccCC
Q psy5058 322 GTKMPRYCLFGDTVNTASRMESTGEALKIHISAEVKEALDVIGGFRTEHRGSNYTK 377 (377)
Q Consensus 322 Gs~~~~y~v~GdtVNiAsRLes~a~~g~I~VS~~t~~~l~~~~~f~~~~~G~i~vK 377 (377)
|.++|+|++||||||+|+||||.+.|++|+||+.||+.+...++|+|++||.+.+|
T Consensus 552 G~kmPRYCLFGdTVn~AsrmES~s~p~KI~vS~~T~~~l~~~~~f~f~pRg~v~vk 607 (671)
T KOG4171|consen 552 GVKMPRYCLFGDTVNLASRMESSSVPGKINVSPTTYRKLKKQGSFEFEPRGRVEVK 607 (671)
T ss_pred cccccceeecCCchhhhhhhhcCCCCceEEeCHHHHHHHHhCCCceeeecCccccC
Confidence 99999999999999999999999999999999999999999888999999999887
No 2
>KOG1023|consensus
Probab=100.00 E-value=7.6e-38 Score=316.56 Aligned_cols=223 Identities=55% Similarity=0.844 Sum_probs=210.3
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhccCCHHHHHHHHccCCCCCCceeeEEEEEEEcCCchhHhhhCC
Q psy5058 154 RNAVTTIQMYAAHLA----QKAHELKREKHKSDTLLVQMLPPSVAMQLKQTQQVPAEYYEAVTVYFSDIVGFTEIAAVST 229 (377)
Q Consensus 154 ~~~~~~~~~~~~~l~----~~~~~l~~ek~~~~~lL~~~lP~~v~~~L~~~~~~~~~~~~~vTVLF~DI~gFT~ls~~~~ 229 (377)
..+...+..|+.++. ++..++..++.+.+.||.++||+.|+++++.|+...++.+..+|++|+||+|||.+++..+
T Consensus 236 D~m~~~le~Y~~nLe~~v~eRt~~l~~e~~k~d~LL~~mLP~~VA~~lk~G~~v~pe~~~~vti~fsDiv~fT~l~~~~~ 315 (484)
T KOG1023|consen 236 DSLFRMLESYADNLEKLVDERTAELEEEKKKTDTLLGQMLPKSVAESLKLGKTVDPESFDSVTIYFSDIVGFTVLSSNST 315 (484)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhHhhcCCcCCccccCceeeeeHHHHHHHHHHhcCC
Confidence 334445566666653 4677899999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCCeEEEEEeCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHhhccCCCCCCCCCceeEEE
Q psy5058 230 PLEVVNFLNSIYKLFDARIEGYDVYKVETIGDSYMVASGLPMKNGDKHVSEIATMALDLLAGSIMFPIPHRKNERVQIRS 309 (377)
Q Consensus 230 p~elv~lLn~~~~~~~~ii~~~gG~~ik~iGD~~ma~fG~p~~~~d~~a~~a~~aAl~i~~~~~~~~~~~~~~~~l~irI 309 (377)
|.+++.+||+.|+.|+.++++|+++++.++||+||++.|+|..++..|+..++.+++++...+..+..+|.+..++++||
T Consensus 316 P~~vv~~lNdlyt~Fd~ii~~~d~yKVetiGDaYmvvSglp~~n~~~H~~eia~msl~~~~~~~~f~i~H~P~~~l~iRi 395 (484)
T KOG1023|consen 316 PIQVVTLLNDLYTTFDRIIDKHDVYKVETIGDAYMVVSGLPIRNGYRHAREIASMALGLRSFLESFSLPHRPWEKLRLRI 395 (484)
T ss_pred CceeeeeccchHHhhhhcccccCCeeEeccCcceeecccCceecHhHHHHHHHHHHHHHHHHHhccCCCCCCchhhheee
Confidence 99999999999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred EeeeccEEEEEeCCCCCcceeeCcHHHHHHHHHhcCCCCcEEeCHHHHHHhhccCCeeEEEcccccCC
Q psy5058 310 GMHTGPVVAGIVGTKMPRYCLFGDTVNTASRMESTGEALKIHISAEVKEALDVIGGFRTEHRGSNYTK 377 (377)
Q Consensus 310 GIhtG~vv~G~iGs~~~~y~v~GdtVNiAsRLes~a~~g~I~VS~~t~~~l~~~~~f~~~~~G~i~vK 377 (377)
|+|+||+++|++|.+.|+|+.+||+||+|+|||+.++ +.|++|++++..+...++|.++.||.+.+|
T Consensus 396 g~~sg~~~agVvgl~mPRYclFgDtvn~AsrMes~G~-~~i~~s~~~~~~l~~~~~~~~e~rG~v~~k 462 (484)
T KOG1023|consen 396 GFHSGPVVAGVVGLKMPRYCLFGDTVNTASRMESNGK-LMIHLSEEAKNLLTERPQFETEERGLVELK 462 (484)
T ss_pred ccccCCceecccccCCCcccchhhHHHHHhhhhhcCC-eEEEecHHHHHHHHhcCceeeeccCcEEee
Confidence 9999999999999999999999999999999999999 999999999999987669999999998876
No 3
>smart00044 CYCc Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes.
Probab=100.00 E-value=1.5e-35 Score=268.82 Aligned_cols=185 Identities=50% Similarity=0.767 Sum_probs=172.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHccC-CCCCCceeeEEEEEEEcCCchhHhhhCChHHHHHHHHHHHHHHHHHhhhCCeEE
Q psy5058 177 EKHKSDTLLVQMLPPSVAMQLKQTQ-QVPAEYYEAVTVYFSDIVGFTEIAAVSTPLEVVNFLNSIYKLFDARIEGYDVYK 255 (377)
Q Consensus 177 ek~~~~~lL~~~lP~~v~~~L~~~~-~~~~~~~~~vTVLF~DI~gFT~ls~~~~p~elv~lLn~~~~~~~~ii~~~gG~~ 255 (377)
|+++.+++|.+|+|+.+++++..+. +....+.+++||||+||+|||.+++..+|+++..+++.++..+.+++.+|||++
T Consensus 2 ~~~~~~~ll~~~lP~~v~~~l~~g~~~~~~~~~~~~tvlf~di~g~t~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gg~v 81 (194)
T smart00044 2 EKRKTDRLLDQLLPASVAESLKRGGSPVPAESYDNVTILFTDIVGFTTLSSEATPEQVVTLLNDLYSRFDRIIDRHGGYK 81 (194)
T ss_pred hHHHHHHHHHHhCCHHHHHHHHhCCCCccccccCeEEEEEeEhhhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCeEE
Confidence 6789999999999999999999987 556788899999999999999999999999999999999999999999999999
Q ss_pred EEEeCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHhhccCCCCCCCCCceeEEEEeeeccEEEEEeCCCCCcceeeCcHH
Q psy5058 256 VETIGDSYMVASGLPMKNGDKHVSEIATMALDLLAGSIMFPIPHRKNERVQIRSGMHTGPVVAGIVGTKMPRYCLFGDTV 335 (377)
Q Consensus 256 ik~iGD~~ma~fG~p~~~~d~~a~~a~~aAl~i~~~~~~~~~~~~~~~~l~irIGIhtG~vv~G~iGs~~~~y~v~GdtV 335 (377)
+++.||++|++||.|.....+|+.+|+.+|++++..+..++.+. ...++++|||||+|+|++|.+|...++|+++|++|
T Consensus 82 ~~~~Gd~~l~~F~~~~~~~~~~a~~a~~~al~l~~~~~~~~~~~-~~~~l~~riGih~G~v~~~~~g~~~~~~~~~G~~v 160 (194)
T smart00044 82 VKTIGDAYMVVSGLPTEALVDHAELAADEALDMVESLKTVLSQH-RGNGLRVRIGIHTGPVVAGVVGITMPRYCLFGDTV 160 (194)
T ss_pred EEEeCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHHHHHHhhc-cCCCeeEEEEEeccceEEEecCCCCceeEEeChHH
Confidence 99999999999999988754599999999999999887776433 36789999999999999999999888999999999
Q ss_pred HHHHHHHhcCCCCcEEeCHHHHHHhhc
Q psy5058 336 NTASRMESTGEALKIHISAEVKEALDV 362 (377)
Q Consensus 336 NiAsRLes~a~~g~I~VS~~t~~~l~~ 362 (377)
|+|+||++.+++|+|++|+++++.+..
T Consensus 161 n~AarL~~~a~~g~i~vs~~~~~~l~~ 187 (194)
T smart00044 161 NLASRMESVGDPGQILVSEETYSLLRR 187 (194)
T ss_pred HHHHHHHhcCCCCeEEECHHHHHHHHh
Confidence 999999999999999999999999964
No 4
>PF00211 Guanylate_cyc: Adenylate and Guanylate cyclase catalytic domain; InterPro: IPR001054 Guanylate cyclases (4.6.1.2 from EC) catalyse the formation of cyclic GMP (cGMP) from GTP. cGMP acts as an intracellular messenger, activating cGMP-dependent kinases and regulating cGMP-sensitive ion channels. The role of cGMP as a second messenger in vascular smooth muscle relaxation and retinal photo-transduction is well established. Guanylate cyclase is found both in the soluble and particulate fractions of eukaryotic cells. The soluble and plasma membrane-bound forms differ in structure, regulation and other properties [, , , ]. Most currently known plasma membrane-bound forms are receptors for small polypeptides. The soluble forms of guanylate cyclase are cytoplasmic heterodimers having alpha and beta subunits. In all characterised eukaryote guanylyl- and adenylyl cyclases, cyclic nucleotide synthesis is carried out by the conserved class III cyclase domain. ; GO: 0016849 phosphorus-oxygen lyase activity, 0009190 cyclic nucleotide biosynthetic process, 0035556 intracellular signal transduction; PDB: 3UVJ_A 1FX4_A 1WC4_B 2BW7_D 1WC1_A 1WC0_A 1WC3_A 1WC5_A 1WC6_A 3ET6_B ....
Probab=100.00 E-value=8.3e-35 Score=261.26 Aligned_cols=170 Identities=37% Similarity=0.561 Sum_probs=155.6
Q ss_pred CCceeeEEEEEEEcCCchhHhhhCChHHHHHHHHHHHHHHHHHhhhCCeEEEEEeCCeEEEEeCCCCCCCchhHHHHHHH
Q psy5058 205 AEYYEAVTVYFSDIVGFTEIAAVSTPLEVVNFLNSIYKLFDARIEGYDVYKVETIGDSYMVASGLPMKNGDKHVSEIATM 284 (377)
Q Consensus 205 ~~~~~~vTVLF~DI~gFT~ls~~~~p~elv~lLn~~~~~~~~ii~~~gG~~ik~iGD~~ma~fG~p~~~~d~~a~~a~~a 284 (377)
.++.+++||||+||+|||.+++.++|++++.+||.++..+++++.+|+|++++++||++|++||.|.+..+ ++.+|+++
T Consensus 3 ~~~~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~Gd~~~~~f~~~~~~~~-~~~~a~~~ 81 (184)
T PF00211_consen 3 SEQYRNVTVLFADIVGFTDLTEQLDPEELVRLLNDFFSSLDRIVKQHGGEIIKFIGDGVMAVFGLPEPDED-AAERAVQF 81 (184)
T ss_dssp EEEEEEEEEEEEEETTHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEETTEEEEEESSSSCHCH-HHHHHHHH
T ss_pred ccccCeEEEEEEEecCcHHHHHhCCchhHHHHHHHHHHHhhhccccccccccccccceeEEEecccccccc-cccccccc
Confidence 45689999999999999999999999999999999999999999999999999999999999999965555 99999999
Q ss_pred HHHHHHhhccCCCCCCCCCceeEEEEeeeccEEEEEeCCCCCcceeeCcHHHHHHHHHhcCCCCcEEeCHHHHHHhhccC
Q psy5058 285 ALDLLAGSIMFPIPHRKNERVQIRSGMHTGPVVAGIVGTKMPRYCLFGDTVNTASRMESTGEALKIHISAEVKEALDVIG 364 (377)
Q Consensus 285 Al~i~~~~~~~~~~~~~~~~l~irIGIhtG~vv~G~iGs~~~~y~v~GdtVNiAsRLes~a~~g~I~VS~~t~~~l~~~~ 364 (377)
|+++.+.+..++... ..++.+|||||+|++++|.+|..++.|++||++||.|+||++.+++++|+||+++++.+....
T Consensus 82 al~~~~~~~~~~~~~--~~~~~~rIGI~~G~v~~g~~G~~~~~~~v~G~~vn~Aarl~~~a~~~~i~vs~~v~~~l~~~~ 159 (184)
T PF00211_consen 82 ALALLEALERLNKES--GPPLSVRIGIHTGPVVVGVVGSRRPEYDVFGDAVNIAARLESLAPPGQILVSEEVYDALNESD 159 (184)
T ss_dssp HHHHHHHHHHHHHHH--HSS-EEEEEEEEEEEEEEEEESSSEEEEEESHHHHHHHHHHHTSSTTSEEEEHHHHHHHTTHT
T ss_pred ccchhhccccccccc--ceeeeeeccccccccccccccCcccceeeeehhhhhhHHHHHhhcccccccCHHHHHHhcccC
Confidence 999999887665332 578999999999999999999667799999999999999999999999999999999999545
Q ss_pred CeeEEEcccccCC
Q psy5058 365 GFRTEHRGSNYTK 377 (377)
Q Consensus 365 ~f~~~~~G~i~vK 377 (377)
.|.++++|.+.+|
T Consensus 160 ~~~~~~~g~~~lk 172 (184)
T PF00211_consen 160 QFRFEELGRVELK 172 (184)
T ss_dssp TEEEEEEEEEEET
T ss_pred ceEEEEeeeEEEe
Confidence 8999999999886
No 5
>COG2114 CyaA Adenylate cyclase, family 3 (some proteins contain HAMP domain) [Signal transduction mechanisms]
Probab=99.98 E-value=4.7e-31 Score=246.30 Aligned_cols=183 Identities=26% Similarity=0.304 Sum_probs=149.9
Q ss_pred HHHHHHHhccCCHHHHHHHHccCCCCCCceeeEEEEEEEcCCchhHhhhCChHHHHHHHHHHHHHHHHHhhhCCeEEEEE
Q psy5058 179 HKSDTLLVQMLPPSVAMQLKQTQQVPAEYYEAVTVYFSDIVGFTEIAAVSTPLEVVNFLNSIYKLFDARIEGYDVYKVET 258 (377)
Q Consensus 179 ~~~~~lL~~~lP~~v~~~L~~~~~~~~~~~~~vTVLF~DI~gFT~ls~~~~p~elv~lLn~~~~~~~~ii~~~gG~~ik~ 258 (377)
......+..+++..+.+++..+. ... +.+|+||+||+|||.+++..+|+++.+++|.|+..+.+++.+|||.++|+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~vtilfaDi~g~T~l~~~~~~~~~~~ll~~~~~~~~~~v~~~gG~v~k~ 94 (227)
T COG2114 19 LRSDLVLRLYLARVVGRLLARGG-AGD---RRVTLLFADIVGSTELSESLGDEALVELLNLYFDAVAEVVARHGGRVVKF 94 (227)
T ss_pred hhhhHHHHHHhhhccchhhcccc-ccC---ceEEEEEEeeccchHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 33444556667777777766554 122 89999999999999999999999999999999999999999999999999
Q ss_pred eCCeEEEEeCCCCCCCchhHHHHHH-HHHHHHHhhccCCCCCCCCCceeEEEEeeeccEEEEEeCCCCCcceeeCcHHHH
Q psy5058 259 IGDSYMVASGLPMKNGDKHVSEIAT-MALDLLAGSIMFPIPHRKNERVQIRSGMHTGPVVAGIVGTKMPRYCLFGDTVNT 337 (377)
Q Consensus 259 iGD~~ma~fG~p~~~~d~~a~~a~~-aAl~i~~~~~~~~~~~~~~~~l~irIGIhtG~vv~G~iGs~~~~y~v~GdtVNi 337 (377)
+||++|++||.|.+.+ ++.+++. +++++.......+.+ .+++|||||+|+|++|.+|+ ||++|++||+
T Consensus 95 iGD~~la~F~~p~~~~--~A~~~a~~~~~~~~~~~~~~~~~-----~l~~riGi~~G~vv~~~~g~----~~~~G~~VN~ 163 (227)
T COG2114 95 IGDGFLAVFGRPSPLE--DAVACALDLQLALRNPLARLRRE-----SLRVRIGIHTGEVVVGNTGG----YTVVGSAVNQ 163 (227)
T ss_pred ecceEEEEeCCCCCcH--HHHHHHHHHHHHHHHHHhhccCc-----CeeEEEEEEeecEEEEeecC----eeEechHhHH
Confidence 9999999999998765 2333322 455666555443322 19999999999999999998 9999999999
Q ss_pred HHHHHhcCCCCcEEeCHHHHHHhhccCCeeEEEcccccCC
Q psy5058 338 ASRMESTGEALKIHISAEVKEALDVIGGFRTEHRGSNYTK 377 (377)
Q Consensus 338 AsRLes~a~~g~I~VS~~t~~~l~~~~~f~~~~~G~i~vK 377 (377)
|+|||+.++|++|++|+.+++.+.. ..+.++..|.+++|
T Consensus 164 AaRLe~~a~~g~i~iS~~~~~~~~~-~~~~~~~~g~~~lk 202 (227)
T COG2114 164 AARLESLAKPGQVLLSEATYDLVRD-LVDLFSGLGSHRLK 202 (227)
T ss_pred HHHHHHhcCCCeEEEcHHHHHHHhh-hhhhhhcCCceecC
Confidence 9999999999999999999999993 14667777777765
No 6
>KOG3619|consensus
Probab=99.98 E-value=1.3e-31 Score=283.78 Aligned_cols=201 Identities=29% Similarity=0.514 Sum_probs=181.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHccC--------------CCCCCceeeEEEEEEEcCCchhHhhhCChH
Q psy5058 166 HLAQKAHELKREKHKSDTLLVQMLPPSVAMQLKQTQ--------------QVPAEYYEAVTVYFSDIVGFTEIAAVSTPL 231 (377)
Q Consensus 166 ~l~~~~~~l~~ek~~~~~lL~~~lP~~v~~~L~~~~--------------~~~~~~~~~vTVLF~DI~gFT~ls~~~~p~ 231 (377)
...+....++.++++.+++|.+.+|++++.++++.- ....+.+.+|+|+|+||+|||.+++.++++
T Consensus 54 ~~i~~r~~l~~~~~~qerlllsvlp~~va~~m~~~i~~~~~~~~~~~~f~~iy~~~h~nVSIl~adivgft~l~s~~saq 133 (867)
T KOG3619|consen 54 KCIEVRMELETEKQQQERLLLSVLPAHVAMEMKKDIIESSARCKNDNQFHKLYIQRHDNVSILFADIVGFTQLASQCSAQ 133 (867)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcchhhhccchhheeeccchHhhHHHHhhhhhhhcCCCHH
Confidence 344556678999999999999999999999986531 123456789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhCCeEEEEEeCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHhhccCCCCCCCCCceeEEEEe
Q psy5058 232 EVVNFLNSIYKLFDARIEGYDVYKVETIGDSYMVASGLPMKNGDKHVSEIATMALDLLAGSIMFPIPHRKNERVQIRSGM 311 (377)
Q Consensus 232 elv~lLn~~~~~~~~ii~~~gG~~ik~iGD~~ma~fG~p~~~~d~~a~~a~~aAl~i~~~~~~~~~~~~~~~~l~irIGI 311 (377)
+++.+||+.|..||++..++++..+|+.||+|.|+.|+|.+.+| ||..+++++++|.++++..+ ...+.++++||||
T Consensus 134 elv~~LneLf~rfd~lA~~~~clRiKiLGdcyyCvsglp~~~~d-HA~~~v~mgl~Mi~aI~~vr--~at~~dvnmrvGi 210 (867)
T KOG3619|consen 134 ELVKVLNELFARFDRLAAENHCLRIKILGDCYYCVSGLPEARPD-HAVCCVEMGLDMIKAIKQVR--EATGVDVNMRVGI 210 (867)
T ss_pred HHHHHHHHHHHHHHHHHHhcceEeeeeecceeEEecCCCCCChh-HHHHHHHHHHHHHHHHHHHH--HHhCCCCceEEEE
Confidence 99999999999999999999999999999999999999998887 99999999999999988775 3357789999999
Q ss_pred eeccEEEEEeCCCCCcceeeCcHHHHHHHHHhcCCCCcEEeCHHHHHHhhccCCeeEEEc
Q psy5058 312 HTGPVVAGIVGTKMPRYCLFGDTVNTASRMESTGEALKIHISAEVKEALDVIGGFRTEHR 371 (377)
Q Consensus 312 htG~vv~G~iGs~~~~y~v~GdtVNiAsRLes~a~~g~I~VS~~t~~~l~~~~~f~~~~~ 371 (377)
|+|+|.||++|-.+++||+||..|.+|.+||+.+.||.||||+.|.+.|.. .|.+++-
T Consensus 211 hsG~Vl~GvlG~~kwq~DVws~dv~lAn~mEs~G~pgrVhis~~Tl~~L~g--~yeve~g 268 (867)
T KOG3619|consen 211 HSGSVLCGVLGLRKWQYDVWSNDVTLANHMEAGGVPGRVHISKATLDCLNG--EYEVEPG 268 (867)
T ss_pred ecCceeecccccceeeeeeccchhhhhhhhhhcCCCceeEechhHHHHhCC--CceeecC
Confidence 999999999999999999999999999999999999999999999999985 5766653
No 7
>KOG3618|consensus
Probab=99.97 E-value=6.7e-31 Score=267.83 Aligned_cols=195 Identities=32% Similarity=0.527 Sum_probs=175.7
Q ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHHHccCCCCC---------------------------------CceeeEEEEEEE
Q psy5058 171 AHELKREKHKSDTLLVQMLPPSVAMQLKQTQQVPA---------------------------------EYYEAVTVYFSD 217 (377)
Q Consensus 171 ~~~l~~ek~~~~~lL~~~lP~~v~~~L~~~~~~~~---------------------------------~~~~~vTVLF~D 217 (377)
.+.|+-||+--+++..+.+|+.|++.|.+.+..+. ..-.+|+|||+|
T Consensus 268 rkdLE~EkqlKe~MIhSVMP~kvAD~Llk~g~~pS~nd~~~~~~~s~~~r~~~s~~vk~~~~FRPF~M~~menVSILFAD 347 (1318)
T KOG3618|consen 268 RKDLEVEKQLKERMIHSVMPRKVADDLLKQGDEPSENDVKRHATSSPKNRKKKSSIVKAPIAFRPFKMQQMENVSILFAD 347 (1318)
T ss_pred hhhhHHHHHHHHHHHHhhcChHHHHHHHhhcCCCCcccccCCCCCCcccccchhhccccccccCchhhhhhhhhhhhhhh
Confidence 45678888888999999999999999865432110 012689999999
Q ss_pred cCCchhHhhhCChHHHHHHHHHHHHHHHHHhhhCCeEEEEEeCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHhhccCCC
Q psy5058 218 IVGFTEIAAVSTPLEVVNFLNSIYKLFDARIEGYDVYKVETIGDSYMVASGLPMKNGDKHVSEIATMALDLLAGSIMFPI 297 (377)
Q Consensus 218 I~gFT~ls~~~~p~elv~lLn~~~~~~~~ii~~~gG~~ik~iGD~~ma~fG~p~~~~d~~a~~a~~aAl~i~~~~~~~~~ 297 (377)
|+|||++++..++++++.+||++|..||.+++-.|++++.+.||||.|+.|+|++..| ||.+++++++.|+.+++.|..
T Consensus 348 IvGFTkMSsnKsA~~LV~lLNDLFgRFD~LC~l~gcEKISTLGDCYYCVaGCPEPraD-HA~ccvEMGLgMI~AirqFd~ 426 (1318)
T KOG3618|consen 348 IVGFTKMSSNKSAHALVGLLNDLFGRFDRLCELTGCEKISTLGDCYYCVAGCPEPRAD-HAYCCVEMGLGMIKAIRQFDQ 426 (1318)
T ss_pred hhchhhccccccHHHHHHHHHHHHHHHHHHHHhcCcchhccccceeeeecCCCCCccc-ceeeehhhcchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999987 999999999999999999874
Q ss_pred CCCCCCceeEEEEeeeccEEEEEeCCCCCcceeeCcHHHHHHHHHhcCCCCcEEeCHHHHHHhhccCCeeEEE
Q psy5058 298 PHRKNERVQIRSGMHTGPVVAGIVGTKMPRYCLFGDTVNTASRMESTGEALKIHISAEVKEALDVIGGFRTEH 370 (377)
Q Consensus 298 ~~~~~~~l~irIGIhtG~vv~G~iGs~~~~y~v~GdtVNiAsRLes~a~~g~I~VS~~t~~~l~~~~~f~~~~ 370 (377)
. ..+.+++|+|||||.|+||++|+++..||+|...||+|..||+.+.+|+||||++|.+.|++ .|..|+
T Consensus 427 ~--r~e~VnMRVGvHTGtVlCGivGtrRfKFDVwSNDV~LAN~MEssGvag~VHiSeaTak~L~d--~Ye~Ee 495 (1318)
T KOG3618|consen 427 E--RKEMVNMRVGVHTGTVLCGIVGTRRFKFDVWSNDVNLANLMESSGVAGKVHISEATAKYLDD--RYEMEE 495 (1318)
T ss_pred H--hhcccceEEEEecceEEeeeeecceEeeeeccCcchHHHHHHhcCCCcceEeeHHHHHHhcc--cceecc
Confidence 3 46678999999999999999999999999999999999999999999999999999999997 576665
No 8
>cd07302 CHD cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.
Probab=99.97 E-value=1.2e-29 Score=223.56 Aligned_cols=166 Identities=38% Similarity=0.552 Sum_probs=155.3
Q ss_pred eEEEEEEEcCCchhHhhhCChHHHHHHHHHHHHHHHHHhhhCCeEEEEEeCCeEEEEeCCCCCCCchhHHHHHHHHHHHH
Q psy5058 210 AVTVYFSDIVGFTEIAAVSTPLEVVNFLNSIYKLFDARIEGYDVYKVETIGDSYMVASGLPMKNGDKHVSEIATMALDLL 289 (377)
Q Consensus 210 ~vTVLF~DI~gFT~ls~~~~p~elv~lLn~~~~~~~~ii~~~gG~~ik~iGD~~ma~fG~p~~~~d~~a~~a~~aAl~i~ 289 (377)
++||||+||+|||.+.+..+|+++..+++.++..+.+++..|||++.++.||+++++|+.|...++ ++.+|+++|++++
T Consensus 1 ~~~il~~di~~~t~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~gd~~~~~f~~~~~~~~-~~~~A~~~a~~i~ 79 (177)
T cd07302 1 EVTVLFADIVGFTALSERLGPEELVELLNEYFSAFDEIIERHGGTVDKTIGDAVMAVFGLPGAHED-HAERAVRAALEMQ 79 (177)
T ss_pred CEEEEEEEccChHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCceEEEEeCCCCCchh-HHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999999999999999999999999988665 9999999999999
Q ss_pred HhhccCCCCCCCCCceeEEEEeeeccEEEEEeCCCCCcceeeCcHHHHHHHHHhcCCCCcEEeCHHHHHHhhccCCeeEE
Q psy5058 290 AGSIMFPIPHRKNERVQIRSGMHTGPVVAGIVGTKMPRYCLFGDTVNTASRMESTGEALKIHISAEVKEALDVIGGFRTE 369 (377)
Q Consensus 290 ~~~~~~~~~~~~~~~l~irIGIhtG~vv~G~iGs~~~~y~v~GdtVNiAsRLes~a~~g~I~VS~~t~~~l~~~~~f~~~ 369 (377)
..+..++.......++.+|||||+|++.+|.+|...+.|+++|++||+|+||++.+++++|++|+++++.+... .|.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~riGi~~G~~~~g~~g~~~~~~~~~G~~v~~A~rl~~~a~~~~i~vs~~~~~~l~~~-~~~~~ 158 (177)
T cd07302 80 EALAELNAEREGGPPLRLRIGIHTGPVVAGVVGSERPEYTVIGDTVNLAARLESLAKPGQILVSEATYELLGDA-GFEFE 158 (177)
T ss_pred HHHHHHhhcccCCCCeEEEEEEecceEEEEecCCCCcceeEecchHhHHHHHHhcCCCCEEEECHHHHHhhccC-ceEEE
Confidence 99998876655678899999999999999999999779999999999999999999999999999999999863 69999
Q ss_pred EcccccCC
Q psy5058 370 HRGSNYTK 377 (377)
Q Consensus 370 ~~G~i~vK 377 (377)
+.|.+.+|
T Consensus 159 ~~~~~~l~ 166 (177)
T cd07302 159 ELGEVELK 166 (177)
T ss_pred EeCCEEec
Confidence 99987765
No 9
>KOG3619|consensus
Probab=99.96 E-value=2.7e-29 Score=266.14 Aligned_cols=210 Identities=32% Similarity=0.545 Sum_probs=182.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHccC----CCCCCceeeEEEEEEEcCCchhHhhhCC----hHHHHHH
Q psy5058 165 AHLAQKAHELKREKHKSDTLLVQMLPPSVAMQLKQTQ----QVPAEYYEAVTVYFSDIVGFTEIAAVST----PLEVVNF 236 (377)
Q Consensus 165 ~~l~~~~~~l~~ek~~~~~lL~~~lP~~v~~~L~~~~----~~~~~~~~~vTVLF~DI~gFT~ls~~~~----p~elv~l 236 (377)
.+..++.++.++.++..+.+|.++||.+|+......+ +...+.+..|.|||+.|.+|.++-...+ -.+.+++
T Consensus 601 ~q~~~E~ee~e~m~~~Nr~LLeNiLPaHVA~HFl~~~~r~~eLY~qSy~~VgVMFASipnF~dFYsE~d~NneGlECLRl 680 (867)
T KOG3619|consen 601 VQAQEEKEEMETMQNLNRLLLENILPSHVAAHFLGSKKRNEELYHQSYDCVGVMFASIPNFKDFYSECDVNNEGLECLRL 680 (867)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHhcChHHHHHHHhhcccchHHHHHhhhceEEEEEEecCCcceeeeeecCCcccchHHHH
Confidence 4445566777777788889999999999999885433 3456678999999999999988766554 4689999
Q ss_pred HHHHHHHHHHHhh--hC-CeEEEEEeCCeEEEEeCCCCCC---Cc------hhHHHHHHHHHHHHHhhccCCCCCCCCCc
Q psy5058 237 LNSIYKLFDARIE--GY-DVYKVETIGDSYMVASGLPMKN---GD------KHVSEIATMALDLLAGSIMFPIPHRKNER 304 (377)
Q Consensus 237 Ln~~~~~~~~ii~--~~-gG~~ik~iGD~~ma~fG~p~~~---~d------~~a~~a~~aAl~i~~~~~~~~~~~~~~~~ 304 (377)
||++...||+++. +| +.+|+|++|-+|||+.|+.... .+ .|+...+.+|++|...+...| ......
T Consensus 681 LNEIIaDFDeLL~~pkF~~IEKIKTIGSTYMAAsGL~~~~~~~~~~~~~~~~h~~~l~eFAlal~~~L~~IN--~~SfNn 758 (867)
T KOG3619|consen 681 LNEIIADFDELLSKPKFSGVEKIKTIGSTYMAASGLNPTSAQENDQSLRQWSHLGALVEFALALMHKLDEIN--RHSFNN 758 (867)
T ss_pred HHHHHhhHHHhcCccccccceeEEEecchhhhhhCCChhhhhccCcchhHHhhHHHHHHHHHHHHHHHHhhh--HHhhcc
Confidence 9999999999998 55 7899999999999999995432 11 477788999999999998887 445678
Q ss_pred eeEEEEeeeccEEEEEeCCCCCcceeeCcHHHHHHHHHhcCCCCcEEeCHHHHHHhhccCCeeEEEcccccCC
Q psy5058 305 VQIRSGMHTGPVVAGIVGTKMPRYCLFGDTVNTASRMESTGEALKIHISAEVKEALDVIGGFRTEHRGSNYTK 377 (377)
Q Consensus 305 l~irIGIhtG~vv~G~iGs~~~~y~v~GdtVNiAsRLes~a~~g~I~VS~~t~~~l~~~~~f~~~~~G~i~vK 377 (377)
+.+||||+.||+++|++|.++|+||+||.|||+||||+|++.+|.|+|+++|...|... +|.|+.||.|.||
T Consensus 759 F~LrIGin~GpvvAGVIGArKPqYDIWGNTVNvASRMdSTGv~g~IQVTEEt~~iL~~~-gy~~~~RG~i~VK 830 (867)
T KOG3619|consen 759 FELRIGINHGPVVAGVIGARKPQYDIWGNTVNVASRMDSTGVPGRIQVTEETANILQGL-GYRFECRGVINVK 830 (867)
T ss_pred ceeeeceeccceeeeEecCCCCCccccccchhhhhcccccCCCCeEEecHHHHHHHhcC-CeeEEecceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999985 8999999999998
No 10
>KOG3618|consensus
Probab=99.94 E-value=2.4e-27 Score=242.04 Aligned_cols=204 Identities=32% Similarity=0.427 Sum_probs=181.2
Q ss_pred HHHHHHHHHHHHHHHHhccCCHHHHHHHHccCCCCCCceeeEEEEEEEcCCchhHhhhC--ChHHHHHHHHHHHHHHHHH
Q psy5058 170 KAHELKREKHKSDTLLVQMLPPSVAMQLKQTQQVPAEYYEAVTVYFSDIVGFTEIAAVS--TPLEVVNFLNSIYKLFDAR 247 (377)
Q Consensus 170 ~~~~l~~ek~~~~~lL~~~lP~~v~~~L~~~~~~~~~~~~~vTVLF~DI~gFT~ls~~~--~p~elv~lLn~~~~~~~~i 247 (377)
.....+..+.+.+-||.+++|.+++++|+...+ ..+...++.|+|+.|++|.++-+.. +..|..+.||+....||++
T Consensus 1044 d~~riQ~mrdQADwLL~NiIP~HvaE~LK~~~k-YSeNH~~~gviFASIvNfnemYeEnyeGGkEflRVLNElIGDFDEL 1122 (1318)
T KOG3618|consen 1044 DRTRIQSMRDQADWLLRNIIPYHVAEQLKVSQK-YSENHDSGGVIFASIVNFNEMYEENYEGGKEFLRVLNELIGDFDEL 1122 (1318)
T ss_pred hHHHHHHHHHHHHHHHhccchHHHHHHhhcccc-ccccCccceEEEEEeccHHHHHHHhhhchHHHHHHHHHHhccHHHH
Confidence 345567788889999999999999999998765 5566788999999999999998754 7899999999999999999
Q ss_pred hhhC---CeEEEEEeCCeEEEEeCCCCCC------CchhHHHHHHHHHHHHHhhccCCCCCCCCCceeEEEEeeeccEEE
Q psy5058 248 IEGY---DVYKVETIGDSYMVASGLPMKN------GDKHVSEIATMALDLLAGSIMFPIPHRKNERVQIRSGMHTGPVVA 318 (377)
Q Consensus 248 i~~~---gG~~ik~iGD~~ma~fG~p~~~------~d~~a~~a~~aAl~i~~~~~~~~~~~~~~~~l~irIGIhtG~vv~ 318 (377)
+.+= ..+++|+||-+|||+.|+...+ ++.|......+|++|+..+..||.. .-..++.+|+|.|-|||.+
T Consensus 1123 LsrPdf~~iEKIKTIG~tyMAASGLnp~~~~~~~hp~EHl~~l~eFa~amq~Vvd~FN~d-lL~Fnf~lrvG~NiGpvTA 1201 (1318)
T KOG3618|consen 1123 LSRPDFSSIEKIKTIGATYMAASGLNPAQAQDGSHPQEHLQILFEFAKAMQRVVDDFNND-LLWFNFKLRVGFNIGPVTA 1201 (1318)
T ss_pred hccccchhhHHHhhhhHHHHHhcCCChHHccCCCChHHHHHHHHHHHHHHHHHHHHhhhh-hhheeeeEEeeccccCccc
Confidence 9863 5789999999999999996432 3458888999999999999988742 2356789999999999999
Q ss_pred EEeCCCCCcceeeCcHHHHHHHHHhcCCCCcEEeCHHHHHHhhccCCeeEEEcccccCC
Q psy5058 319 GIVGTKMPRYCLFGDTVNTASRMESTGEALKIHISAEVKEALDVIGGFRTEHRGSNYTK 377 (377)
Q Consensus 319 G~iGs~~~~y~v~GdtVNiAsRLes~a~~g~I~VS~~t~~~l~~~~~f~~~~~G~i~vK 377 (377)
|+||+.+.-||+|||+||+||||-+++-+++|+||++++..|.+ .|+|++||.|.||
T Consensus 1202 GVIGTtKLyYDIWGDtVNiASRMdsTGv~nRIQVs~~~~~~L~~--rYeFe~Rg~v~VK 1258 (1318)
T KOG3618|consen 1202 GVIGTTKLYYDIWGDTVNIASRMDSTGVENRIQVSEESYRVLSK--RYEFEYRGTVNVK 1258 (1318)
T ss_pred cccccceeeehhhcchhhhhhhccccCCcceeEecHHHHHHHHh--hccccccceEEEe
Confidence 99999999999999999999999999999999999999999998 6999999999987
No 11
>cd07556 Nucleotidyl_cyc_III Class III nucleotidyl cyclases. Class III nucleotidyl cyclases are the largest, most diverse group of nucleotidyl cyclases (NC's) containing prokaryotic and eukaryotic proteins. They can be divided into two major groups; the mononucleotidyl cyclases (MNC's) and the diguanylate cyclases (DGC's). The MNC's, which include the adenylate cyclases (AC's) and the guanylate cyclases (GC's), have a conserved cyclase homology domain (CHD), while the DGC's have a conserved GGDEF domain, named after a conserved motif within this subgroup. Their products, cyclic guanylyl and adenylyl nucleotides, are second messengers that play important roles in eukaryotic signal transduction and prokaryotic sensory pathways.
Probab=99.38 E-value=2.1e-11 Score=102.04 Aligned_cols=132 Identities=40% Similarity=0.627 Sum_probs=113.8
Q ss_pred EEEEEEEcCCchhHhhhCChHHHHHHHHHHHHHHHHHhhhCCeEEEEEeCCeEEEEeCCCCCCCchhHHHHHHHHHHHHH
Q psy5058 211 VTVYFSDIVGFTEIAAVSTPLEVVNFLNSIYKLFDARIEGYDVYKVETIGDSYMVASGLPMKNGDKHVSEIATMALDLLA 290 (377)
Q Consensus 211 vTVLF~DI~gFT~ls~~~~p~elv~lLn~~~~~~~~ii~~~gG~~ik~iGD~~ma~fG~p~~~~d~~a~~a~~aAl~i~~ 290 (377)
++++++||.+|+.+.+..++...-+++..+...+.+.+..+++.+.++.||.++++|.. ....++..++..+..
T Consensus 2 ~~ll~i~i~~~~~i~~~~g~~~~~~~l~~~~~~l~~~~~~~~~~~~r~~~d~f~~l~~~------~~~~~~~~~~~~i~~ 75 (133)
T cd07556 2 VTILFADIVGFTSLADALGPDEGDELLNELAGRFDSLIRRSGDLKIKTIGDEFMVVSGL------DHPAAAVAFAEDMRE 75 (133)
T ss_pred EEEEEEEchhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcCcEEEEeecceEEEEECc------hHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999953 245667777778877
Q ss_pred hhccCCCCCCCCCceeEEEEeeeccEEEEEeCCCCCcceeeCcHHHHHHHHHhcCCCCcEE
Q psy5058 291 GSIMFPIPHRKNERVQIRSGMHTGPVVAGIVGTKMPRYCLFGDTVNTASRMESTGEALKIH 351 (377)
Q Consensus 291 ~~~~~~~~~~~~~~l~irIGIhtG~vv~G~iGs~~~~y~v~GdtVNiAsRLes~a~~g~I~ 351 (377)
.+...... ....+.+++|+|.|++..+..|. ++.+..+|+.+|.|+++++.+++++|+
T Consensus 76 ~~~~~~~~--~~~~~~~~ig~~~g~~~~~~~~~-~~~~~~~~~~~~~a~~a~~~a~~~~i~ 133 (133)
T cd07556 76 AVSALNQS--EGNPVRVRIGIHTGPVVVGVIGS-RPQYDVWGALVNLASRMESQAKAGQVL 133 (133)
T ss_pred HHHHHHhc--cCCceEEEEEEecccEEEEeccC-CccceEEcHHHHHHHHHHhcCCCCCcC
Confidence 66543211 34568899999999999999998 668899999999999999999998763
No 12
>PRK10245 adrA diguanylate cyclase AdrA; Provisional
Probab=95.77 E-value=2.4 Score=42.35 Aligned_cols=97 Identities=14% Similarity=0.120 Sum_probs=65.5
Q ss_pred eeEEEEEEEcCCchhHhhhCChHHHHHHHHHHHHHHHHHhhhCCeEEEEEeCCeEEEEeCCCCCCCchhHHHHHHHHHHH
Q psy5058 209 EAVTVYFSDIVGFTEIAAVSTPLEVVNFLNSIYKLFDARIEGYDVYKVETIGDSYMVASGLPMKNGDKHVSEIATMALDL 288 (377)
Q Consensus 209 ~~vTVLF~DI~gFT~ls~~~~p~elv~lLn~~~~~~~~ii~~~gG~~ik~iGD~~ma~fG~p~~~~d~~a~~a~~aAl~i 288 (377)
++.+++++||.+|..+.+..+.+.--++|..+-+.+...+.. +..+-++-||.+.++.... ....+...+-.+
T Consensus 235 ~~~~ll~idId~Fk~INd~~Gh~~GD~lL~~vA~~L~~~l~~-~d~laRlggdeFavll~~~------~~~~a~~~~~rl 307 (366)
T PRK10245 235 RDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRG-SDVIGRFGGDEFAVIMSGT------PAESAITAMSRV 307 (366)
T ss_pred CCEEEEEEECCcchHHHHhhCchHHHHHHHHHHHHHHHhCCC-CCEEEEEcCcEEEEEeCCC------CHHHHHHHHHHH
Confidence 457899999999999999998888778888888888777754 4577889999999887421 223344445555
Q ss_pred HHhhccCCCCCCCCCceeEEEEee
Q psy5058 289 LAGSIMFPIPHRKNERVQIRSGMH 312 (377)
Q Consensus 289 ~~~~~~~~~~~~~~~~l~irIGIh 312 (377)
.+.+............+.++||+.
T Consensus 308 ~~~l~~~~~~~~~~i~~s~SiGia 331 (366)
T PRK10245 308 HEGLNTLRLPNAPQVTLRISVGVA 331 (366)
T ss_pred HHHHhhcccCCCCceEEEEEEEEE
Confidence 555554433222223345555553
No 13
>PF05165 GGDN: GGDN family; InterPro: IPR007839 GTP cyclohydrolase III catalyses the formation of 2-amino-5-formylamino-6- ribofuranosylamino-4(3H)-pyrimidinone ribonucleotide monophosphate and inorganic phosphate from GTP. The enzyme also has an independent pyrophosphate phosphohydrolase activity. The proteins are 200-270 amino acids in length.; GO: 0003933 GTP cyclohydrolase activity, 0009058 biosynthetic process; PDB: 2QV6_B.
Probab=95.57 E-value=0.18 Score=47.50 Aligned_cols=61 Identities=18% Similarity=0.169 Sum_probs=49.7
Q ss_pred eeeEEEEEEEcCCch-hHhhhCChHHHHHHHHHHHHHHHHHhhhCCeEEEEEeCCeEEEEeC
Q psy5058 208 YEAVTVYFSDIVGFT-EIAAVSTPLEVVNFLNSIYKLFDARIEGYDVYKVETIGDSYMVASG 268 (377)
Q Consensus 208 ~~~vTVLF~DI~gFT-~ls~~~~p~elv~lLn~~~~~~~~ii~~~gG~~ik~iGD~~ma~fG 268 (377)
...|+|...||.++| .++...+|-+..-.+.+.+..+.+.+.+||+.---.-||-+|++++
T Consensus 125 d~~v~iAH~DI~d~T~~~Td~~~~ydt~~~I~~l~~~l~~~~~~~G~L~fylGGDNi~~v~p 186 (246)
T PF05165_consen 125 DGYVQIAHFDINDSTGTYTDEESPYDTYLEIEDLYAKLMKYLEKYGSLAFYLGGDNIMAVCP 186 (246)
T ss_dssp S--EEEEEEEETTHHHHTTTTS-HHHHHHHHHHHHHHHHHHHHTTT---EEEETTEEEEE-T
T ss_pred CCceEEEEEeeeccchhhhcccChHHHHHHHHHHHHHHHHHHHhcCCEEEEecCceEEEECC
Confidence 456999999999999 9999999999999999999999999999999887777999999883
No 14
>PRK09966 putative inner membrane diguanylate cyclase; Provisional
Probab=95.49 E-value=1.3 Score=44.40 Aligned_cols=59 Identities=15% Similarity=-0.030 Sum_probs=47.5
Q ss_pred eeEEEEEEEcCCchhHhhhCChHHHHHHHHHHHHHHHHHhhhCCeEEEEEeCCeEEEEeC
Q psy5058 209 EAVTVYFSDIVGFTEIAAVSTPLEVVNFLNSIYKLFDARIEGYDVYKVETIGDSYMVASG 268 (377)
Q Consensus 209 ~~vTVLF~DI~gFT~ls~~~~p~elv~lLn~~~~~~~~ii~~~gG~~ik~iGD~~ma~fG 268 (377)
...++++.|+.+|..+-+..+.+.-=++|..+-..+.+.+.+ +..+-.+-||.+..+..
T Consensus 277 ~~~~l~~i~id~f~~in~~~G~~~gd~~l~~~a~~L~~~~~~-~~~~~R~~~deF~ill~ 335 (407)
T PRK09966 277 KTSALLFLDGDNFKYINDTWGHATGDRVLIEIAKRLAEFGGL-RHKAYRLGGDEFAMVLY 335 (407)
T ss_pred CceEEEEEECccchHHHhhhchHHHHHHHHHHHHHHHHhCCC-CCEEEEEccceEEEEEc
Confidence 346899999999999999999887777887777777766654 35677888999988874
No 15
>PRK11059 regulatory protein CsrD; Provisional
Probab=94.92 E-value=3.4 Score=44.41 Aligned_cols=98 Identities=14% Similarity=0.171 Sum_probs=68.3
Q ss_pred eEEEEEEEcCCchhHhhhCChHHHHHHHHHHHHHHHHHhhhC-CeEEEEEeCCeEEEEeCCCCCCCchhHHHHHHHHHHH
Q psy5058 210 AVTVYFSDIVGFTEIAAVSTPLEVVNFLNSIYKLFDARIEGY-DVYKVETIGDSYMVASGLPMKNGDKHVSEIATMALDL 288 (377)
Q Consensus 210 ~vTVLF~DI~gFT~ls~~~~p~elv~lLn~~~~~~~~ii~~~-gG~~ik~iGD~~ma~fG~p~~~~d~~a~~a~~aAl~i 288 (377)
..++++.||.+|..+-+..+...-=++|..+-..+...+.++ +..+-.+-||.+..+.. .. +...+...|-.+
T Consensus 259 ~~~ll~idid~fk~iNd~~Gh~~gD~~L~~va~~L~~~~~~~~~~~~aR~ggdeFaill~--~~----~~~~a~~~a~~l 332 (640)
T PRK11059 259 HGVVMLIRLPDFDLLQEEWGESQVEELLFELINLLSTFVMRYPGALLARYSRSDFAVLLP--HR----SLKEADSLASQL 332 (640)
T ss_pred cEEEEEEECchHHHHHHhcChHHHHHHHHHHHHHHHHHHhcCCCCEEEEecCCEEEEEeC--CC----ChHHHHHHHHHH
Confidence 478999999999999999998888888888888888888775 55677889999988873 21 234455556666
Q ss_pred HHhhccCCCCCCCCCceeEEEEeee
Q psy5058 289 LAGSIMFPIPHRKNERVQIRSGMHT 313 (377)
Q Consensus 289 ~~~~~~~~~~~~~~~~l~irIGIht 313 (377)
...+..............+.||+..
T Consensus 333 ~~~i~~~~~~~~~~~~~~~siGia~ 357 (640)
T PRK11059 333 LKAVDALPPPKMLDRDDFLHIGICA 357 (640)
T ss_pred HHHHHhccCCcccCcccEEEEEEEe
Confidence 6655544332222233445666543
No 16
>PF07701 HNOBA: Heme NO binding associated; InterPro: IPR011645 The HNOBA (Haem NO Binding) domain is found associated with the HNOB domain and IPR001054 from INTERPRO in soluble cyclases and signalling proteins. The HNOB domain is predicted to function as a haem-dependent sensor for gaseous ligands, and transduce diverse downstream signals in both bacteria and animals.; GO: 0004383 guanylate cyclase activity, 0006182 cGMP biosynthetic process; PDB: 2P04_B 2P08_A 3HLS_E.
Probab=94.65 E-value=0.18 Score=46.90 Aligned_cols=36 Identities=50% Similarity=0.672 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHH
Q psy5058 162 MYAAHLAQKAHELKREKHKSDTLLVQMLPPSVAMQL 197 (377)
Q Consensus 162 ~~~~~l~~~~~~l~~ek~~~~~lL~~~lP~~v~~~L 197 (377)
.....+.+...+++++|+++++||.+++|+.|+++|
T Consensus 184 ~~~~~Le~~~~~l~~ek~ktd~LL~~mlP~~VA~~L 219 (219)
T PF07701_consen 184 EKSAELEESMRELEEEKKKTDELLYSMLPPSVADRL 219 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhhC
Confidence 667778888999999999999999999999999986
No 17
>PRK15426 putative diguanylate cyclase YedQ; Provisional
Probab=94.33 E-value=1.8 Score=45.39 Aligned_cols=78 Identities=14% Similarity=0.057 Sum_probs=57.2
Q ss_pred eeEEEEEEEcCCchhHhhhCChHHHHHHHHHHHHHHHHHhhhCCeEEEEEeCCeEEEEeCCCCCCCchhHHHHHHHHHHH
Q psy5058 209 EAVTVYFSDIVGFTEIAAVSTPLEVVNFLNSIYKLFDARIEGYDVYKVETIGDSYMVASGLPMKNGDKHVSEIATMALDL 288 (377)
Q Consensus 209 ~~vTVLF~DI~gFT~ls~~~~p~elv~lLn~~~~~~~~ii~~~gG~~ik~iGD~~ma~fG~p~~~~d~~a~~a~~aAl~i 288 (377)
+..+++++||.+|..+-+..+.+.-=++|..+-..+...+.. ++.+-.+-||.++.+...+ ....+...+-.+
T Consensus 428 ~~~~l~~idid~fk~iNd~~G~~~GD~~L~~~a~~l~~~~~~-~~~~~R~ggdeF~ill~~~------~~~~~~~~~~~l 500 (570)
T PRK15426 428 QPFSVIQLDLDHFKSINDRFGHQAGDRVLSHAAGLISSSLRA-QDVAGRVGGEEFCVVLPGA------SLAEAAQVAERI 500 (570)
T ss_pred CcEEEEEEECcccCHhhHhhChHHHHHHHHHHHHHHHHhCCC-CCEEEeecCcEEEEEeCCC------CHHHHHHHHHHH
Confidence 447899999999999999999888888888888888877764 4567788999998887322 223344445555
Q ss_pred HHhhc
Q psy5058 289 LAGSI 293 (377)
Q Consensus 289 ~~~~~ 293 (377)
...+.
T Consensus 501 ~~~~~ 505 (570)
T PRK15426 501 RLRIN 505 (570)
T ss_pred HHHHh
Confidence 55544
No 18
>smart00267 GGDEF diguanylate cyclase. Diguanylate cyclase, present in a variety of bacteria
Probab=94.00 E-value=1.2 Score=37.09 Aligned_cols=58 Identities=10% Similarity=0.125 Sum_probs=49.6
Q ss_pred eEEEEEEEcCCchhHhhhCChHHHHHHHHHHHHHHHHHhhhCCeEEEEEeCCeEEEEeC
Q psy5058 210 AVTVYFSDIVGFTEIAAVSTPLEVVNFLNSIYKLFDARIEGYDVYKVETIGDSYMVASG 268 (377)
Q Consensus 210 ~vTVLF~DI~gFT~ls~~~~p~elv~lLn~~~~~~~~ii~~~gG~~ik~iGD~~ma~fG 268 (377)
..+++.++|.+|..+.+..+.+..-.++..+...+.+.+.. +..+-...||.++++..
T Consensus 34 ~~~l~~i~i~~~~~~~~~~g~~~~~~~l~~i~~~l~~~~~~-~~~~~r~~~~~f~ii~~ 91 (163)
T smart00267 34 PFALLLIDLDNFKDINDTYGHAVGDELLQEVAQRLSSCLRP-GDLLARLGGDEFALLLP 91 (163)
T ss_pred eEEEEEEEccccchhhhccCchhHHHHHHHHHHHHHHhcCC-CCEEEEecCceEEEEec
Confidence 38899999999999999999999999999988888887766 45777778888888874
No 19
>PF00990 GGDEF: GGDEF domain; InterPro: IPR000160 This domain appears to be ubiquitous in bacteria and is often linked to a regulatory domain, such as a phosphorylation receiver or oxygen sensing domain. Its function is to synthesize cyclic di-GMP, which is used as an intracellular signalling molecule in a wide variety of bacteria [,]. Enzymatic activity can be strongly influenced by the adjacent domains. Processes regulated by this domain include exopolysaccharide synthesis, biofilm formation, motility and cell differentiation. Structural studies of PleD from Caulobacter crescentus show that this domain forms a five-stranded beta sheet surrounded by helices, similar to the catalytic core of adenylate cyclase [].; PDB: 3IGN_A 3BRE_B 3EZU_A 3ICL_B 3PJX_A 3PJW_A 3HVW_A 3HVA_B 3I5C_B 3I5B_B ....
Probab=93.36 E-value=0.59 Score=39.23 Aligned_cols=81 Identities=14% Similarity=0.080 Sum_probs=60.5
Q ss_pred eeEEEEEEEcCCchhHhhhCChHHHHHHHHHHHHHHHHHhhhCCeEEEEEeCCeEEEEeCCCCCCCchhHHHHHHHHHHH
Q psy5058 209 EAVTVYFSDIVGFTEIAAVSTPLEVVNFLNSIYKLFDARIEGYDVYKVETIGDSYMVASGLPMKNGDKHVSEIATMALDL 288 (377)
Q Consensus 209 ~~vTVLF~DI~gFT~ls~~~~p~elv~lLn~~~~~~~~ii~~~gG~~ik~iGD~~ma~fG~p~~~~d~~a~~a~~aAl~i 288 (377)
...++++.+|.+|..+.+..+++..-.+|..+...+...+.. +..+..+-+|.+++++..+ ..+ .+......+..+
T Consensus 31 ~~~~l~~i~i~~~~~l~~~~G~~~~~~~l~~i~~~L~~~~~~-~~~~~r~~~~~f~il~~~~--~~~-~~~~~~~~~~~~ 106 (161)
T PF00990_consen 31 EPFALVLIDIDNLDELNEKYGYEVGDEILRQIAKRLKKQLRE-SDILARLGDDEFAILLPDT--DSE-EAEELAERLERL 106 (161)
T ss_dssp SEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT-TSEEEEEETTEEEEEEETC--THH-HHHHHHHHHHHH
T ss_pred CCceEEEEeccccccccccccccccccccccccccccccccc-ccccccccchheeeccccc--ccc-cchhhhhhhhhh
Confidence 458999999999999999999998888888888888888777 6788888999998887432 211 334555555555
Q ss_pred HHhhc
Q psy5058 289 LAGSI 293 (377)
Q Consensus 289 ~~~~~ 293 (377)
...+.
T Consensus 107 ~~~~~ 111 (161)
T PF00990_consen 107 IDELN 111 (161)
T ss_dssp HHHHC
T ss_pred hhhcc
Confidence 54433
No 20
>COG2429 Archaeal GTP cyclohydrolase III [Nucleotide transport and metabolism]
Probab=93.24 E-value=0.99 Score=41.95 Aligned_cols=61 Identities=15% Similarity=0.134 Sum_probs=55.0
Q ss_pred eeEEEEEEEcCCch-hHhhhCChHHHHHHHHHHHHHHHHHhhhCCeEEEEEeCCeEEEEeCC
Q psy5058 209 EAVTVYFSDIVGFT-EIAAVSTPLEVVNFLNSIYKLFDARIEGYDVYKVETIGDSYMVASGL 269 (377)
Q Consensus 209 ~~vTVLF~DI~gFT-~ls~~~~p~elv~lLn~~~~~~~~ii~~~gG~~ik~iGD~~ma~fG~ 269 (377)
.-+.|...|+.+-| .++...+|-+....++..+..+.+.+.++|+..--.-||-+|++++.
T Consensus 130 g~v~IAH~Dvn~~Tgt~Td~~~~~~t~~~I~~~~~~L~~~l~k~gal~fflGGDN~ma~~p~ 191 (250)
T COG2429 130 GYVQIAHFDVNDATGTYTDIVSPYDTYTEIQRVYATLMRFLEKIGALLFFLGGDNIMAVCPG 191 (250)
T ss_pred CceEEEEEeeecchhhhhcccchhHHHHHHHHHHHHHHHHHHhcCcEEEEecCcceEEECCC
Confidence 45899999999999 89999999999999999999999999998887766679999999854
No 21
>cd01949 GGDEF Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.
Probab=92.33 E-value=2.7 Score=34.63 Aligned_cols=59 Identities=12% Similarity=0.148 Sum_probs=49.0
Q ss_pred eeEEEEEEEcCCchhHhhhCChHHHHHHHHHHHHHHHHHhhhCCeEEEEEeCCeEEEEeC
Q psy5058 209 EAVTVYFSDIVGFTEIAAVSTPLEVVNFLNSIYKLFDARIEGYDVYKVETIGDSYMVASG 268 (377)
Q Consensus 209 ~~vTVLF~DI~gFT~ls~~~~p~elv~lLn~~~~~~~~ii~~~gG~~ik~iGD~~ma~fG 268 (377)
...++++.+|.+|..+....+++..-+++..+...+.+.+.. ++.+..+-+|.++++..
T Consensus 30 ~~~~l~~i~i~~~~~i~~~~g~~~~~~~l~~~~~~l~~~~~~-~~~~~~~~~~~f~~l~~ 88 (158)
T cd01949 30 RPLALLLIDIDHFKQINDTYGHAAGDEVLKEVAERLRSSLRE-SDLVARLGGDEFAILLP 88 (158)
T ss_pred CeEEEEEEEchhhhHHHHhhChHhHHHHHHHHHHHHHHhCCC-CCEEEEecCCeEEEEeC
Confidence 347899999999999999999999999999988888887765 45666777788888773
No 22
>PRK02240 GTP cyclohydrolase III; Provisional
Probab=92.09 E-value=1.7 Score=41.24 Aligned_cols=60 Identities=15% Similarity=0.167 Sum_probs=49.6
Q ss_pred eeeEEEEEEEcCCchhHhh-hCChHHHHHHHHHHHHHHHHHhhh-CCeEEEEEeCCeEEEEe
Q psy5058 208 YEAVTVYFSDIVGFTEIAA-VSTPLEVVNFLNSIYKLFDARIEG-YDVYKVETIGDSYMVAS 267 (377)
Q Consensus 208 ~~~vTVLF~DI~gFT~ls~-~~~p~elv~lLn~~~~~~~~ii~~-~gG~~ik~iGD~~ma~f 267 (377)
...|+|...||.++|.... ..+|-+..-.++..+..+.+.+.+ ||+----.=||-+|+++
T Consensus 132 ~~~v~iaH~Di~~~T~~~td~~~~~dt~~~i~~~~~~l~~~~~~~~g~l~ff~GGDN~~~~~ 193 (254)
T PRK02240 132 DGYVQIAHFDINDITGTYTDIENAFDTFLEIEQAYLALMRELRKAHDALSFFVGGDNFMAPC 193 (254)
T ss_pred CCceEEEEEeeecccceeeccCchhHHHHHHHHHHHHHHHHHHHhcCcEEEEecCceEEEEC
Confidence 4679999999999999855 458888888888888888888887 88866656699999998
No 23
>PRK11829 biofilm formation regulator HmsP; Provisional
Probab=91.94 E-value=7.8 Score=41.49 Aligned_cols=78 Identities=9% Similarity=0.089 Sum_probs=56.1
Q ss_pred eEEEEEEEcCCchhHhhhCChHHHHHHHHHHHHHHHHHhhhCCeEEEEEeCCeEEEEeCCCCCCCchhHHHHHHHHHHHH
Q psy5058 210 AVTVYFSDIVGFTEIAAVSTPLEVVNFLNSIYKLFDARIEGYDVYKVETIGDSYMVASGLPMKNGDKHVSEIATMALDLL 289 (377)
Q Consensus 210 ~vTVLF~DI~gFT~ls~~~~p~elv~lLn~~~~~~~~ii~~~gG~~ik~iGD~~ma~fG~p~~~~d~~a~~a~~aAl~i~ 289 (377)
..++++.||.+|..+-+..+.+.-=.+|..+-..+.+.+.. +..+-.+-||.+..+.... . +...+...+-.+.
T Consensus 262 ~~~l~~idid~f~~in~~~G~~~gD~lL~~va~~l~~~~~~-~~~~aRl~gdeF~vl~~~~--~---~~~~~~~~~~~i~ 335 (660)
T PRK11829 262 HFHLLVIGIETLQEVSGAMSEAQHQQLLLTIVQRIEQCIDD-SDLLAQLSKTEFAVLARGT--R---RSFPAMQLARRIM 335 (660)
T ss_pred CEEEEEEECCcHHHHHHhhChHHHHHHHHHHHHHHHHhCCC-CcEEEEEeCCEEEEEEcCC--C---CHHHHHHHHHHHH
Confidence 47899999999999999999887777777777777776654 3567788999998887321 1 2234444555555
Q ss_pred Hhhc
Q psy5058 290 AGSI 293 (377)
Q Consensus 290 ~~~~ 293 (377)
..+.
T Consensus 336 ~~~~ 339 (660)
T PRK11829 336 SQVT 339 (660)
T ss_pred HHhc
Confidence 5443
No 24
>COG2199 c-di-GMP synthetase (diguanylate cyclase, GGDEF domain) [Signal transduction mechanisms]
Probab=91.63 E-value=2.8 Score=36.79 Aligned_cols=97 Identities=16% Similarity=0.130 Sum_probs=64.8
Q ss_pred eeEEEEEEEcCCchhHhhhCChHHHHHHHHHHHHHHHHHhhhCCeEEEEEeCCeEEEEeCCCCCCCchhHHHHHHHHHHH
Q psy5058 209 EAVTVYFSDIVGFTEIAAVSTPLEVVNFLNSIYKLFDARIEGYDVYKVETIGDSYMVASGLPMKNGDKHVSEIATMALDL 288 (377)
Q Consensus 209 ~~vTVLF~DI~gFT~ls~~~~p~elv~lLn~~~~~~~~ii~~~gG~~ik~iGD~~ma~fG~p~~~~d~~a~~a~~aAl~i 288 (377)
...++++.||-+|-.+-...+...--.+|..+...+...+...+ .+.++-||.+..+..... ...+...|-.+
T Consensus 50 ~~~~l~~iDiD~Fk~iND~~Gh~~GD~vL~~va~~L~~~~~~~~-~~~R~gGdEF~i~l~~~~------~~~~~~~~~~l 122 (181)
T COG2199 50 EPLALLLLDLDHFKQINDTYGHAAGDEVLREVARRLRSNLREGD-LVARLGGDEFAVLLPGTS------LEEAARLAERI 122 (181)
T ss_pred CCeEEEEEeCcCCccccccccchHHHHHHHHHHHHHHHhcCCCC-EEEEeccceeEEEeCCCC------HHHHHHHHHHH
Confidence 45899999999999998888877777777777778877777666 888899999999885432 34444455555
Q ss_pred HHhhccCCCCCCCCCceeEEEEee
Q psy5058 289 LAGSIMFPIPHRKNERVQIRSGMH 312 (377)
Q Consensus 289 ~~~~~~~~~~~~~~~~l~irIGIh 312 (377)
...+...........++.+.|||.
T Consensus 123 ~~~~~~~~~~~~~~~~~t~siGi~ 146 (181)
T COG2199 123 RAALEEPFFLGGEELRVTVSIGVA 146 (181)
T ss_pred HHHHHcccccCCceEEEEEEEEEE
Confidence 444443322111122455555543
No 25
>PRK09894 diguanylate cyclase; Provisional
Probab=91.18 E-value=7.4 Score=36.85 Aligned_cols=59 Identities=12% Similarity=0.124 Sum_probs=48.3
Q ss_pred eeEEEEEEEcCCchhHhhhCChHHHHHHHHHHHHHHHHHhhhCCeEEEEEeCCeEEEEeC
Q psy5058 209 EAVTVYFSDIVGFTEIAAVSTPLEVVNFLNSIYKLFDARIEGYDVYKVETIGDSYMVASG 268 (377)
Q Consensus 209 ~~vTVLF~DI~gFT~ls~~~~p~elv~lLn~~~~~~~~ii~~~gG~~ik~iGD~~ma~fG 268 (377)
...++++.||.+|..+....+...--.+|..+-..+...+... ..+-.+-||.++++..
T Consensus 157 ~~~~l~~i~id~f~~in~~~G~~~gd~~L~~ia~~l~~~~~~~-~~~~R~~g~~F~ill~ 215 (296)
T PRK09894 157 QNLYLALLDIDRFKLVNDTYGHLIGDVVLRTLATYLASWTRDY-ETVYRYGGEEFIICLK 215 (296)
T ss_pred CcEEEEEEECccccHHHHccCcHHHHHHHHHHHHHHHHhCCCC-CEEEEEcCCeEEEEeC
Confidence 3478999999999999999998888888888888887777553 4677888999988863
No 26
>TIGR00254 GGDEF diguanylate cyclase (GGDEF) domain. The GGDEF domain is named for the motif GG[DE]EF shared by many proteins carrying the domain. There is evidence that the domain has diguanylate cyclase activity. Several proteins carrying this domain also carry domains with functions relating to environmental sensing. These include PleD, a response regulator protein involved in the swarmer-to-stalked cell transition in Caulobacter crescentus, and FixL, a heme-containing oxygen sensor protein.
Probab=90.75 E-value=4.8 Score=33.78 Aligned_cols=58 Identities=16% Similarity=0.196 Sum_probs=47.3
Q ss_pred eEEEEEEEcCCchhHhhhCChHHHHHHHHHHHHHHHHHhhhCCeEEEEEeCCeEEEEeC
Q psy5058 210 AVTVYFSDIVGFTEIAAVSTPLEVVNFLNSIYKLFDARIEGYDVYKVETIGDSYMVASG 268 (377)
Q Consensus 210 ~vTVLF~DI~gFT~ls~~~~p~elv~lLn~~~~~~~~ii~~~gG~~ik~iGD~~ma~fG 268 (377)
..+++..+|.+|..+...++.+..-.++..+...+.+.+.. +..+..+-+|.++++..
T Consensus 33 ~~~l~~i~i~~~~~i~~~~G~~~~~~ll~~~a~~l~~~~~~-~~~i~r~~~~~f~il~~ 90 (165)
T TIGR00254 33 SFSVLMIDIDNFKKINDTLGHDVGDEVLREVARILQSSVRG-SDVVGRYGGEEFVVILP 90 (165)
T ss_pred ceEEEEEeccchhHHHHhhChhhHHHHHHHHHHHHHHhcCc-CCEEEEecCCeEEEEeC
Confidence 37899999999999999999888888888888888877743 45677788888888763
No 27
>PRK13561 putative diguanylate cyclase; Provisional
Probab=89.96 E-value=26 Score=37.54 Aligned_cols=58 Identities=7% Similarity=0.111 Sum_probs=49.0
Q ss_pred eeEEEEEEEcCCchhHhhhCChHHHHHHHHHHHHHHHHHhhhCCeEEEEEeCCeEEEEe
Q psy5058 209 EAVTVYFSDIVGFTEIAAVSTPLEVVNFLNSIYKLFDARIEGYDVYKVETIGDSYMVAS 267 (377)
Q Consensus 209 ~~vTVLF~DI~gFT~ls~~~~p~elv~lLn~~~~~~~~ii~~~gG~~ik~iGD~~ma~f 267 (377)
...++++.|+.+|..+.+..+.+.-=.+|..+-..+.+.+.. +..+-.+-||.+..+.
T Consensus 257 ~~~~l~~idld~f~~in~~~G~~~gD~lL~~ia~~L~~~~~~-~~~~aRl~gdeF~ill 314 (651)
T PRK13561 257 QTTALMIITCETLRDTAGVLKEAQREILLLTLVEKLKSVLSP-RMVLAQISGYDFAIIA 314 (651)
T ss_pred CCeEEEEEECCchHHHHHhhChHHHHHHHHHHHHHHHHhCCC-CcEEEEEeCCEEEEEE
Confidence 457899999999999999999888888888888888877765 4577889999998887
No 28
>TIGR02577 cas_TM1794_Crm2 CRISPR-associated protein, Crm2 family. This model represent a Crm2 family of the CRISPR-associated RAMP module, a set of six genes recurring found together in prokaryotic genomes. This gene cluster is found only in species with CRISPR repeats, usually near the repeats themselves. Because most of the six (but not this family) contain RAMP domains, and because its appearance in a genome appears to depend on other CRISPR-associated Cas genes, the set is designated the CRISPR RAMP module. This protein, typified by TM1794 from Thermotoga maritima, is designated Crm2, for CRISPR RAMP Module protein 2.
Probab=89.30 E-value=4.1 Score=42.45 Aligned_cols=119 Identities=12% Similarity=-0.016 Sum_probs=83.6
Q ss_pred eeeEEEEEEEcCCchhHhhhC------------------Ch---HHHHHHHHHHHHHHHHHhhhCCeEEEEEeCCeEEEE
Q psy5058 208 YEAVTVYFSDIVGFTEIAAVS------------------TP---LEVVNFLNSIYKLFDARIEGYDVYKVETIGDSYMVA 266 (377)
Q Consensus 208 ~~~vTVLF~DI~gFT~ls~~~------------------~p---~elv~lLn~~~~~~~~ii~~~gG~~ik~iGD~~ma~ 266 (377)
..-.+++-+|--+-..+.+.. +| ..+.+.|+.|+....+.+.+++|.++-.=||-++++
T Consensus 341 ~~y~Ail~aDGD~mG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~aL~~f~~~~~~~v~~~~g~~VYaGGDDvlai 420 (482)
T TIGR02577 341 RPYYAILKADGDRMGKLLRGEIRPEEKERIHPKKVKNLTTPAAHVAFSRALAEFSLKAVKIVVNEHGELVYAGGDDVLAL 420 (482)
T ss_pred CceEEEEEccccchHHHHhCCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCcEEEE
Confidence 345899999988887776652 33 678888999998888888889999998899999999
Q ss_pred eCCCCCCCchhHHHHHHHHHHHHHhhccCCCCCC-CCCceeEEEEeeeccEEEEEeCCCCCcceeeCcHHHHHHHHHhcC
Q psy5058 267 SGLPMKNGDKHVSEIATMALDLLAGSIMFPIPHR-KNERVQIRSGMHTGPVVAGIVGTKMPRYCLFGDTVNTASRMESTG 345 (377)
Q Consensus 267 fG~p~~~~d~~a~~a~~aAl~i~~~~~~~~~~~~-~~~~l~irIGIhtG~vv~G~iGs~~~~y~v~GdtVNiAsRLes~a 345 (377)
. .+..|..+|.++............ ....+.+..||- ++- . -..+....+.|..++..|
T Consensus 421 ~---------p~~~al~~a~~l~~~F~~~~~~~~~~~~~~T~SaGI~----iah---~----k~Pl~~~~~~a~ell~~A 480 (482)
T TIGR02577 421 L---------PVDTALDVAKELRKEFRESLEKSLGGERGPTMSAGLL----IVH---H----KEPLYDALELARRLLKRA 480 (482)
T ss_pred c---------cHHHHHHHHHHHHHHHHHHhhcccccCCCceEEEEEE----EeC---C----CCcHHHHHHHHHHHHHHh
Confidence 9 566788888888877655432111 122344444332 221 1 245677888898888776
Q ss_pred C
Q psy5058 346 E 346 (377)
Q Consensus 346 ~ 346 (377)
+
T Consensus 481 K 481 (482)
T TIGR02577 481 K 481 (482)
T ss_pred c
Confidence 5
No 29
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=86.48 E-value=7.5 Score=39.94 Aligned_cols=122 Identities=14% Similarity=0.105 Sum_probs=75.7
Q ss_pred eeeEEEEEEEcCCchhHhhhCChHHHHHHHHHHHHHHHHHhhhCCeEEEEEeCCeEEEEeCCCCCCCchhHHHHHHHHHH
Q psy5058 208 YEAVTVYFSDIVGFTEIAAVSTPLEVVNFLNSIYKLFDARIEGYDVYKVETIGDSYMVASGLPMKNGDKHVSEIATMALD 287 (377)
Q Consensus 208 ~~~vTVLF~DI~gFT~ls~~~~p~elv~lLn~~~~~~~~ii~~~gG~~ik~iGD~~ma~fG~p~~~~d~~a~~a~~aAl~ 287 (377)
.+..+++++||-.|-.+-...+..--=+.|..+-..+.+.+ +.-..+-.|-|+.++.++.. .+...|+..|=.
T Consensus 299 ~~pls~~m~DID~FK~iNDt~GH~~GDevLr~vA~~L~~~v-r~~Dl~aRyGGEEF~vvlp~------t~~~~Ai~iaer 371 (435)
T COG3706 299 GRPLSLLMLDIDDFKEINDTYGHDVGDEVLRQVARRLRQTV-RGLDLVARYGGEEFAVVLPD------TDLEAAIAIAER 371 (435)
T ss_pred CCCeeEEEEecccccccccccCCccHHHHHHHHHHHHHhhc-cccccceecCCeeEEEEecC------CCHHHHHHHHHH
Confidence 35689999999999999887765433333444444444444 34455566677778777732 256777788888
Q ss_pred HHHhhccCCCCCCCC---CceeEEEEeeeccEEEEEeCCCCCcceeeCcHHHHHHHHHhcCC
Q psy5058 288 LLAGSIMFPIPHRKN---ERVQIRSGMHTGPVVAGIVGTKMPRYCLFGDTVNTASRMESTGE 346 (377)
Q Consensus 288 i~~~~~~~~~~~~~~---~~l~irIGIhtG~vv~G~iGs~~~~y~v~GdtVNiAsRLes~a~ 346 (377)
|+..+....+.+... ..+.+.|||.++. |..+.+..-++-|.+.-..++
T Consensus 372 Ir~~i~~~~~~~~~~~~~~~~TiSiGVa~~~----------p~~~~~~~li~~AD~aLy~AK 423 (435)
T COG3706 372 IRQKINELPFVHELSREPLEVTISIGVAEGK----------PGEDSIEELLKRADKALYKAK 423 (435)
T ss_pred HHHHHhcCCccccccccceEEEEEEEEEecC----------CCCCcHHHHHHHHHHHHhHHH
Confidence 888888776655443 3466777777643 223334455556666544444
No 30
>PF10851 DUF2652: Protein of unknown function (DUF2652) ; InterPro: IPR020503 This entry contains proteins with no known function.
Probab=86.14 E-value=10 Score=31.50 Aligned_cols=97 Identities=16% Similarity=0.101 Sum_probs=59.1
Q ss_pred HHHHhhhC-CeEEEEEeCCeEEEEeCCCCCCCch-hHHHHHHHHHHHHHhhccCCCCC-------CCCCceeEEEEeeec
Q psy5058 244 FDARIEGY-DVYKVETIGDSYMVASGLPMKNGDK-HVSEIATMALDLLAGSIMFPIPH-------RKNERVQIRSGMHTG 314 (377)
Q Consensus 244 ~~~ii~~~-gG~~ik~iGD~~ma~fG~p~~~~d~-~a~~a~~aAl~i~~~~~~~~~~~-------~~~~~l~irIGIhtG 314 (377)
+..+|... |-.+-+.-||+++-+- |...... -...+..+-.+.......+.... ....++.++.-+|+|
T Consensus 5 LE~iI~an~~l~lseiEGDAilFy~--~~~~~~~~v~~q~~~M~~aF~~~~~~~~~~~~C~C~aC~~~~~LsLKfV~H~G 82 (116)
T PF10851_consen 5 LEAIIDANLGLKLSEIEGDAILFYK--YGKDTSVEVCRQCERMRRAFHQRREQLKKDRICQCGACAQLINLSLKFVAHYG 82 (116)
T ss_pred HHHHHccCCCcEEEEecccEEEEEc--CCCCccHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhhhcceEEEEEEee
Confidence 34455554 4577788999987543 2222221 22223333333333344443322 334679999999999
Q ss_pred cEEEEEeCCCCCcceeeCcHHHHHHHHHhcC
Q psy5058 315 PVVAGIVGTKMPRYCLFGDTVNTASRMESTG 345 (377)
Q Consensus 315 ~vv~G~iGs~~~~y~v~GdtVNiAsRLes~a 345 (377)
++..-.+|.-. -+.|.+|-+|.||-...
T Consensus 83 e~~~~~Vk~~~---kL~G~dVI~aHrlLKN~ 110 (116)
T PF10851_consen 83 EVAQQKVKRFC---KLAGKDVIEAHRLLKND 110 (116)
T ss_pred eeeeeeecccc---hhcCchhhHhHHHHcCC
Confidence 99888887533 47899999999996543
No 31
>PRK02240 GTP cyclohydrolase III; Provisional
Probab=82.32 E-value=11 Score=35.83 Aligned_cols=56 Identities=13% Similarity=0.198 Sum_probs=47.3
Q ss_pred EEEEEcCCchhHhhhCChH---HHHHHHHHHHHHHHHHhhhCCeEEEEEeCCeEEEEeC
Q psy5058 213 VYFSDIVGFTEIAAVSTPL---EVVNFLNSIYKLFDARIEGYDVYKVETIGDSYMVASG 268 (377)
Q Consensus 213 VLF~DI~gFT~ls~~~~p~---elv~lLn~~~~~~~~ii~~~gG~~ik~iGD~~ma~fG 268 (377)
|..+.|.||-.|++.+.|. ++-.+=.+++..+.+.+.++||...-+-||-+|++.+
T Consensus 4 it~iqid~YgpWT~t~~prRE~dlQ~lQsrLya~L~~~~~~~ggl~Ff~RgDN~iavtN 62 (254)
T PRK02240 4 ITLIQIDNYGPWTVTPNPRRESDLQALQSRLYADLAQQFGARDGYVFFTRFDNMIAVTN 62 (254)
T ss_pred EEEEEecCCCcCcCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCEEEeccCceEEEEcC
Confidence 4557889999999999874 4555557888999999999999999999999999974
No 32
>PF13974 YebO: YebO-like protein
Probab=80.73 E-value=7.4 Score=30.36 Aligned_cols=51 Identities=22% Similarity=0.341 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHH
Q psy5058 139 LILVLMVSPIIILLVRNAVTTIQMYAAHLAQKAHELKREKHKSDTLLVQMLPPSV 193 (377)
Q Consensus 139 ~v~v~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~l~~ek~~~~~lL~~~lP~~v 193 (377)
.+++++++.++-+++.|+- ..+....+-.+++-+++++...||.++.|...
T Consensus 4 ~~~~~lv~livWFFVnRaS----vRANEQI~LL~~ileqQKrQn~LL~rL~~~~~ 54 (80)
T PF13974_consen 4 SVLVLLVGLIVWFFVNRAS----VRANEQIELLEEILEQQKRQNALLRRLCEANE 54 (80)
T ss_pred hHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3444455555555555543 22333344456666677777778877777644
No 33
>TIGR02578 cas_TM1811_Csm1 CRISPR-associated protein, Csm1 family. The family is designated Csm2, for CRISPR/Cas Subtype Mtube Protein 2. A typical example is TM1811 from Thermotoga maritima. CRISPR are Clustered Regularly Interspaced Short Palindromic Repeats. This protein family belongs to a conserved gene cluster regularly found near CRISPR repeats.
Probab=79.64 E-value=19 Score=39.01 Aligned_cols=114 Identities=18% Similarity=0.187 Sum_probs=79.6
Q ss_pred eeEEEEEEEcCCchhHhhhCC--------hHHHHHHHHHHHHH-HHHHhhhC----CeEEEEEeCCeEEEEeCCCCCCCc
Q psy5058 209 EAVTVYFSDIVGFTEIAAVST--------PLEVVNFLNSIYKL-FDARIEGY----DVYKVETIGDSYMVASGLPMKNGD 275 (377)
Q Consensus 209 ~~vTVLF~DI~gFT~ls~~~~--------p~elv~lLn~~~~~-~~~ii~~~----gG~~ik~iGD~~ma~fG~p~~~~d 275 (377)
.-++||-+|.-+...+-.... -..+...|+.+|.. +..+++.+ +++++-.-||-++++.
T Consensus 521 ~~lavl~~D~DnlG~~f~~g~~~~~~~s~~~~lS~~l~~fF~~~v~~i~~~~~~~~~~~~VYaGGDDv~~ig-------- 592 (648)
T TIGR02578 521 KKLGVLKMDVDNLGEIFASGLKRPTRISRLATLSRQLELFFKLYLLHLAEDKRNKRNLYVVYSGGDDLFLIG-------- 592 (648)
T ss_pred ceEEEEEccccCHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCEEEEEEccccEEEEc--------
Confidence 568999999988777765431 24677778877765 55566666 7888877899999988
Q ss_pred hhHHHHHHHHHHHHHhhccCCCCCCCCCceeEEEEeeeccEEEEEeCCCCCcceeeCcHHHHHHHHHhcCC
Q psy5058 276 KHVSEIATMALDLLAGSIMFPIPHRKNERVQIRSGMHTGPVVAGIVGTKMPRYCLFGDTVNTASRMESTGE 346 (377)
Q Consensus 276 ~~a~~a~~aAl~i~~~~~~~~~~~~~~~~l~irIGIhtG~vv~G~iGs~~~~y~v~GdtVNiAsRLes~a~ 346 (377)
+...+..+|.++......+.. .+.+.+.+||... ..+ ..+....+.|.+++..|+
T Consensus 593 -~~~~~l~~A~~i~~~F~~~~~----~~~~TlSaGi~i~-------~~k----~Pl~~~~~~aee~l~~AK 647 (648)
T TIGR02578 593 -PWNAVLELASDIREYFEKFTC----RDKITISAGVVVV-------SPK----YPVYRAARIAEELLEAAK 647 (648)
T ss_pred -cHHHHHHHHHHHHHHHHHHhC----CCCeeEEEEEEEC-------CCC----CCHHHHHHHHHHHHHHhc
Confidence 567888899999988876542 1445555554421 122 245677888988888775
No 34
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=78.53 E-value=58 Score=35.40 Aligned_cols=59 Identities=15% Similarity=0.200 Sum_probs=48.4
Q ss_pred eeEEEEEEEcCCchhHhhhCChHHHHHHHHHHHHHHHHHhhhCCeEEEEEeCCeEEEEeC
Q psy5058 209 EAVTVYFSDIVGFTEIAAVSTPLEVVNFLNSIYKLFDARIEGYDVYKVETIGDSYMVASG 268 (377)
Q Consensus 209 ~~vTVLF~DI~gFT~ls~~~~p~elv~lLn~~~~~~~~ii~~~gG~~ik~iGD~~ma~fG 268 (377)
...++++.||-+|..+.+..+....-.+|..+-..+.+.+.. ++.+-.+-||.++++..
T Consensus 402 ~~~~l~~i~i~~~~~in~~~G~~~~d~ll~~~a~~l~~~~~~-~~~~~r~~~~eF~il~~ 460 (799)
T PRK11359 402 VSPVVYLIGVDHFQDVIDSLGYAWADQALLEVVNRFREKLKP-DQYLCRIEGTQFVLVSL 460 (799)
T ss_pred CCEEEEEEECCcHHHHHHHhCcHHHHHHHHHHHHHHHHhCCC-CCEEEEEcCCEEEEEEc
Confidence 457899999999999999999887778888888888777754 46777888999988773
No 35
>PF08376 NIT: Nitrate and nitrite sensing; InterPro: IPR013587 The nitrate and nitrite-sensing (NIT) domain is a (~250 aa) sensor domain found in various receptor components of signal transduction pathways from different bacterial lineages []. The NIT domain is predicted to be all alpha-helical in structure []. Proteins containing a NIT domain belong to one of four known classes of prokaryotic signal transduction proteins: intracellular transcription anti-termination regulators, sensor histidine kinases, methyl-accepting chemotaxis proteins, diguanylate cyclases/phosphodiesterases. NIT-containing receptors regulate cellular functions such as gene expression (transcription anti-terminators and histidine kinases), cell motility (chemotaxis receptors), and enzyme activity (diguanylate cyclases/phosphodiesterases), in response to changes in nitrate and/or nitrite concentrations. The NIT domain is found as both an extracellular and an intracellular sensor. The NIT domain can be found in combination with other signalling domains, such as ANTAR, HAMP (IPR003660 from INTERPRO), MCP, Hemerythrins (IPR002063 from INTERPRO), CHASE (IPR006189 from INTERPRO), GGDEF (IPR000160 from INTERPRO), PAS (IPR000014 from INTERPRO), EAL (IPR001633 from INTERPRO), HK (IPR005467 from INTERPRO), GAF, REC and Hpt (IPR008207 from INTERPRO).; PDB: 4AKK_A.
Probab=77.37 E-value=7.8 Score=35.62 Aligned_cols=48 Identities=31% Similarity=0.389 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5058 72 FRILREQIQMNNPISR-SGETAIEYFDLMAKFTDELRKLQRELRSQIKK 119 (377)
Q Consensus 72 ~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~i~~ 119 (377)
..++++.+..+....+ +.-++..||..++.++|.++.+++.+...|.+
T Consensus 197 ~~~~~~~i~~~~~~~~~~~~~~~~W~~~~t~~id~l~~ve~~l~~~i~~ 245 (247)
T PF08376_consen 197 VQRLRDQILSNGPGGGLSPIDAEEWFAAATARIDALRQVEDRLADDIDD 245 (247)
T ss_dssp HHHHHHHHHCS----S-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3447777877766434 44789999999999999999999999877654
No 36
>PRK10060 RNase II stability modulator; Provisional
Probab=73.28 E-value=43 Score=36.23 Aligned_cols=77 Identities=16% Similarity=0.203 Sum_probs=54.2
Q ss_pred eeEEEEEEEcCCchhHhhhCChHHHHHHHHHHHHHHHHHhhhCCeEEEEEeCCeEEEEeCCCCCCCchhHHHHHHHHHHH
Q psy5058 209 EAVTVYFSDIVGFTEIAAVSTPLEVVNFLNSIYKLFDARIEGYDVYKVETIGDSYMVASGLPMKNGDKHVSEIATMALDL 288 (377)
Q Consensus 209 ~~vTVLF~DI~gFT~ls~~~~p~elv~lLn~~~~~~~~ii~~~gG~~ik~iGD~~ma~fG~p~~~~d~~a~~a~~aAl~i 288 (377)
...++++.|+.+|..+.+..+...-=++|..+-..+...+.. +..+-.+-||.++++... . ....+...+-.+
T Consensus 265 ~~~~ll~idld~fk~iNd~~G~~~gD~lL~~va~~L~~~~~~-~d~vaRlggdeF~ill~~--~----~~~~~~~~~~~i 337 (663)
T PRK10060 265 NQVGIVYLDLDNFKKVNDAYGHMFGDQLLQDVSLAILSCLEE-DQTLARLGGDEFLVLASH--T----SQAALEAMASRI 337 (663)
T ss_pred CcEEEEEEECcchhHHHHhhCcHHHHHHHHHHHHHHHHhCCC-CCEEEEEcCCEEEEEEcC--C----CHHHHHHHHHHH
Confidence 457899999999999988888777777777777777776654 467888899999888742 1 223344445555
Q ss_pred HHhh
Q psy5058 289 LAGS 292 (377)
Q Consensus 289 ~~~~ 292 (377)
+..+
T Consensus 338 ~~~l 341 (663)
T PRK10060 338 LTRL 341 (663)
T ss_pred HHHc
Confidence 5544
No 37
>PRK14538 putative bifunctional signaling protein/50S ribosomal protein L9; Provisional
Probab=71.75 E-value=26 Score=39.17 Aligned_cols=94 Identities=12% Similarity=0.133 Sum_probs=62.9
Q ss_pred EEEEEcCCchhHhhhCChHHHHHHHHHHHHHHHHHhhhCCeEEEEEeCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHhh
Q psy5058 213 VYFSDIVGFTEIAAVSTPLEVVNFLNSIYKLFDARIEGYDVYKVETIGDSYMVASGLPMKNGDKHVSEIATMALDLLAGS 292 (377)
Q Consensus 213 VLF~DI~gFT~ls~~~~p~elv~lLn~~~~~~~~ii~~~gG~~ik~iGD~~ma~fG~p~~~~d~~a~~a~~aAl~i~~~~ 292 (377)
+.-..|-+|.+....++..+-..+...+-+.+.+.+..|+|.+-++..|-|++++.- ..-.....-=+.+++.+
T Consensus 207 ~g~i~iDNyde~~~~~~~~~~s~l~~~i~~~l~~~~~~~~~~~r~~~~dry~~~~~~------~~l~~~~~~kF~iLd~i 280 (838)
T PRK14538 207 LAMITFDNLEESLIRYDLSEQSQIQGEYLSALSDFIEPYEGYLKQLIDDRFLLLINR------QNLDKMIENKFSILDTI 280 (838)
T ss_pred EEEEEeeCHHHHhcccchHHHHHHHHHHHHHHHHHHHhCCEEEEEecCCcEEEEEEH------HHHHHHHHhCCcHHHHH
Confidence 334444556666666666777777788888899999999999999999999999932 23344444445566655
Q ss_pred ccCCCCCCCCCceeEEEEeeec
Q psy5058 293 IMFPIPHRKNERVQIRSGMHTG 314 (377)
Q Consensus 293 ~~~~~~~~~~~~l~irIGIhtG 314 (377)
+..+. ....++.+.||+..|
T Consensus 281 r~~~~--~~~~~vTLSiGig~g 300 (838)
T PRK14538 281 RNISH--KYQLKVTLSMGIACW 300 (838)
T ss_pred HHhhc--CCCCceEEEEEEeCC
Confidence 55432 234556666666654
No 38
>PRK09776 putative diguanylate cyclase; Provisional
Probab=61.88 E-value=63 Score=36.61 Aligned_cols=79 Identities=11% Similarity=0.080 Sum_probs=55.6
Q ss_pred eeEEEEEEEcCCchhHhhhCChHHHHHHHHHHHHHHHHHhhhCCeEEEEEeCCeEEEEeCCCCCCCchhHHHHHHHHHHH
Q psy5058 209 EAVTVYFSDIVGFTEIAAVSTPLEVVNFLNSIYKLFDARIEGYDVYKVETIGDSYMVASGLPMKNGDKHVSEIATMALDL 288 (377)
Q Consensus 209 ~~vTVLF~DI~gFT~ls~~~~p~elv~lLn~~~~~~~~ii~~~gG~~ik~iGD~~ma~fG~p~~~~d~~a~~a~~aAl~i 288 (377)
...++++.||.+|..+-+..+...-=.+|..+-..+.+.+.. +..+-++-||.+..+.. .. +...+...+-.+
T Consensus 695 ~~~~l~~idid~fk~in~~~G~~~gd~~L~~~a~~l~~~~~~-~~~~~R~~gdeF~vl~~--~~----~~~~~~~~~~~l 767 (1092)
T PRK09776 695 QRHALVFIDLDRFKAVNDSAGHAAGDALLRELASLMLSMLRS-SDVLARLGGDEFGLLLP--DC----NVESARFIATRI 767 (1092)
T ss_pred CcEEEEEEECcchHHHHHhhChhhHHHHHHHHHHHHHHhCCC-cCEEEEecCcEEEEEeC--CC----ChHHHHHHHHHH
Confidence 358999999999999999998877777777777777776654 34677889999988863 21 223344445555
Q ss_pred HHhhcc
Q psy5058 289 LAGSIM 294 (377)
Q Consensus 289 ~~~~~~ 294 (377)
...+..
T Consensus 768 ~~~~~~ 773 (1092)
T PRK09776 768 ISAIND 773 (1092)
T ss_pred HHHHhh
Confidence 555543
No 39
>PRK09581 pleD response regulator PleD; Reviewed
Probab=61.81 E-value=1.2e+02 Score=29.95 Aligned_cols=58 Identities=16% Similarity=0.173 Sum_probs=39.3
Q ss_pred eEEEEEEEcCCchhHhhhCChHHHHHHHHHHHHHHHHHhhhCCeEEEEEeCCeEEEEeC
Q psy5058 210 AVTVYFSDIVGFTEIAAVSTPLEVVNFLNSIYKLFDARIEGYDVYKVETIGDSYMVASG 268 (377)
Q Consensus 210 ~vTVLF~DI~gFT~ls~~~~p~elv~lLn~~~~~~~~ii~~~gG~~ik~iGD~~ma~fG 268 (377)
..++++.++.+|..+....+....-.++..+-..+.+.+.. .+.+....|+.++++..
T Consensus 323 ~~~~l~i~i~~~~~i~~~~g~~~~~~~l~~i~~~l~~~~~~-~~~~~r~~~~~f~ill~ 380 (457)
T PRK09581 323 PLSLMMIDIDHFKKVNDTYGHDAGDEVLREFAKRLRNNIRG-TDLIARYGGEEFVVVMP 380 (457)
T ss_pred cEEEEEEecchhhHhHHhhChhhHHHHHHHHHHHHHhhCCC-CcEEEEecCCEEEEEeC
Confidence 36788999999988877666655444555555666666655 34556666788887764
No 40
>PF11294 DUF3095: Protein of unknown function (DUF3095); InterPro: IPR021445 Some members in this bacterial family of proteins are annotated as adenylyl cyclase however this cannot be confirmed. Currently no function is known.
Probab=61.68 E-value=59 Score=32.80 Aligned_cols=142 Identities=17% Similarity=0.129 Sum_probs=73.4
Q ss_pred eeEEEEEEEcCCchhHhhhCChHHHHHHHHH-HHHHHHHHhhhCCeEEEE--EeCCeEEEEeCCCCCCCchhHHHHHHHH
Q psy5058 209 EAVTVYFSDIVGFTEIAAVSTPLEVVNFLNS-IYKLFDARIEGYDVYKVE--TIGDSYMVASGLPMKNGDKHVSEIATMA 285 (377)
Q Consensus 209 ~~vTVLF~DI~gFT~ls~~~~p~elv~lLn~-~~~~~~~ii~~~gG~~ik--~iGD~~ma~fG~p~~~~d~~a~~a~~aA 285 (377)
.+=.|..+||+++|...+. +...-+++... ....+..++ ++.-+- |=|||-..+-+ . +....++.|
T Consensus 25 ddW~v~vaDIv~ST~AIa~-GrYK~VNm~Ga~~IaAv~N~~---~~~~~PFvFGGDGA~~~vP--p-----~~~~~ar~a 93 (373)
T PF11294_consen 25 DDWFVGVADIVNSTKAIAA-GRYKDVNMAGAAVIAAVLNAL---GGRDFPFVFGGDGATFAVP--P-----SLLEAAREA 93 (373)
T ss_pred CCcEEEEeehhccHHHHHc-CCcccchHHHHHHHHHHHhcc---cCCCCCeEecCCCeEEecC--H-----HHHHHHHHH
Confidence 4457899999999998764 33333333322 122222222 444333 45898777652 1 223333333
Q ss_pred HHHHHhhccCCCCCCCCCceeEEEEeee-------c-cEEEEEeCCCCC-ccee-eCcHHHHHHHHHhcCCCCcEEeCHH
Q psy5058 286 LDLLAGSIMFPIPHRKNERVQIRSGMHT-------G-PVVAGIVGTKMP-RYCL-FGDTVNTASRMESTGEALKIHISAE 355 (377)
Q Consensus 286 l~i~~~~~~~~~~~~~~~~l~irIGIht-------G-~vv~G~iGs~~~-~y~v-~GdtVNiAsRLes~a~~g~I~VS~~ 355 (377)
|.-...... ....+.+|+|+=- | .|-+.-...... .|.+ .|+....|.+... +....|.....
T Consensus 94 La~~~~~~~------~~f~l~LRvg~VPV~~Ir~~G~dvrvAr~~~S~~~~~amf~GgGL~~AE~~mK-~~~~~i~~~~~ 166 (373)
T PF11294_consen 94 LAAVRAWVK------EEFDLELRVGLVPVSDIRAEGLDVRVARFAASPNVSYAMFSGGGLAWAEALMK-AGRYLIPPAPP 166 (373)
T ss_pred HHHHHHHHH------HhcCCceeEeeeEHHHHHhCCCeEEEEEEccCCCceEEEEecCcHHHHHHHHh-cccccCCCCCC
Confidence 333322211 2344678887642 2 455555554333 5554 4999999999877 33333333222
Q ss_pred HHHHhhccCCeeEEE
Q psy5058 356 VKEALDVIGGFRTEH 370 (377)
Q Consensus 356 t~~~l~~~~~f~~~~ 370 (377)
....+..++.|+-
T Consensus 167 --~~~pdLtGlsCRW 179 (373)
T PF11294_consen 167 --GTRPDLTGLSCRW 179 (373)
T ss_pred --CCCCCCCCceeeC
Confidence 2223434566653
No 41
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=46.58 E-value=4.1e+02 Score=28.69 Aligned_cols=124 Identities=9% Similarity=0.128 Sum_probs=80.4
Q ss_pred EEEEEcCCchhHhhhCChHHHHHHHHHHHHHHHHHhhhCCeEEEEEeCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHhh
Q psy5058 213 VYFSDIVGFTEIAAVSTPLEVVNFLNSIYKLFDARIEGYDVYKVETIGDSYMVASGLPMKNGDKHVSEIATMALDLLAGS 292 (377)
Q Consensus 213 VLF~DI~gFT~ls~~~~p~elv~lLn~~~~~~~~ii~~~gG~~ik~iGD~~ma~fG~p~~~~d~~a~~a~~aAl~i~~~~ 292 (377)
+.+..+-+|.++...++.++...+-+-.-+.+.+...+|+...-++.+|-++++... .--.....-=+.+++.+
T Consensus 177 l~~i~vDNyDe~t~~~~d~~rs~inS~V~s~l~~~a~~~~if~rr~s~drf~~~~~~------~~L~~l~~~kF~iLd~~ 250 (655)
T COG3887 177 LGIISVDNYDEVTQGLSDSDRSQINSFVTSFLEEWATEYNIFLRRYSSDRFYAFTNY------KILEKLEEDKFSILDEF 250 (655)
T ss_pred EEEEEeccHHHHhcCCChhhHHHHHHHHHHHHHHHHHHhhhhheeecCCeEEEEecH------HHHHHHHHhhhHHHHHH
Confidence 444455578889888887777777777778888889999999999999999999842 13333444445555555
Q ss_pred ccCCCCCCCCCceeEEEEeeeccEEEEEeCCCCCcceeeCcHHHHHHHHHhcCCCCcEEeCH
Q psy5058 293 IMFPIPHRKNERVQIRSGMHTGPVVAGIVGTKMPRYCLFGDTVNTASRMESTGEALKIHISA 354 (377)
Q Consensus 293 ~~~~~~~~~~~~l~irIGIhtG~vv~G~iGs~~~~y~v~GdtVNiAsRLes~a~~g~I~VS~ 354 (377)
++.. ...+.|+.+.||+..|.--. .-+|+....+-+|.-.-...||.|-+
T Consensus 251 RE~s--~~~~ipLTLSiGvg~g~~~~----------~elg~vA~~~L~lAlgRGGDQVvIke 300 (655)
T COG3887 251 REES--SQKNIPLTLSIGVGYGENNL----------IELGEVAQSNLDLALGRGGDQVVIKE 300 (655)
T ss_pred HHHh--hccCcceEEEEEeccCcccH----------HHHHHHHHHhHHHHhccCCceEEEEc
Confidence 4432 34567899999988875422 33444444444443222223666543
No 42
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=46.14 E-value=1.3e+02 Score=22.90 Aligned_cols=37 Identities=8% Similarity=0.099 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHcc
Q psy5058 164 AAHLAQKAHELKREKHKSDTLLVQMLPPSVAMQLKQT 200 (377)
Q Consensus 164 ~~~l~~~~~~l~~ek~~~~~lL~~~lP~~v~~~L~~~ 200 (377)
...+..+...++.+..+...-..++-.|.-++++-..
T Consensus 33 ~~~~~~~~~~l~~en~~L~~ei~~l~~~~rIe~~Ar~ 69 (85)
T TIGR02209 33 LQKLQLEIDKLQKEWRDLQLEVAELSRHERIEKIAKK 69 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 3334444444444444444444444455555555443
No 43
>cd00446 GrpE GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent.
Probab=35.91 E-value=2.7e+02 Score=23.53 Aligned_cols=32 Identities=22% Similarity=0.168 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCCeEEEEEeCC
Q psy5058 230 PLEVVNFLNSIYKLFDARIEGYDVYKVETIGD 261 (377)
Q Consensus 230 p~elv~lLn~~~~~~~~ii~~~gG~~ik~iGD 261 (377)
...+.+-+..++..|..++.++|...+...|+
T Consensus 61 ~~~~~~g~~~i~~~l~~~L~~~Gv~~i~~~g~ 92 (137)
T cd00446 61 LKNLVEGVEMTLKQLLDVLEKHGVEKIEPEGE 92 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEECCCCC
Confidence 46678888999999999999999999877776
No 44
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=35.79 E-value=1.6e+02 Score=24.87 Aligned_cols=18 Identities=28% Similarity=0.407 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy5058 166 HLAQKAHELKREKHKSDT 183 (377)
Q Consensus 166 ~l~~~~~~l~~ek~~~~~ 183 (377)
.+.+...++++.|+...+
T Consensus 33 eL~~~k~el~~yk~~V~~ 50 (128)
T PF06295_consen 33 ELEQAKQELEQYKQEVND 50 (128)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444445555544443
No 45
>PRK11677 hypothetical protein; Provisional
Probab=35.69 E-value=1.6e+02 Score=25.26 Aligned_cols=17 Identities=24% Similarity=0.190 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy5058 140 ILVLMVSPIIILLVRNA 156 (377)
Q Consensus 140 v~v~~~~~~i~~~~~~~ 156 (377)
++.++++.++.+++.+.
T Consensus 7 ~i~livG~iiG~~~~R~ 23 (134)
T PRK11677 7 LIGLVVGIIIGAVAMRF 23 (134)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34455555555655554
No 46
>PRK05423 hypothetical protein; Provisional
Probab=34.12 E-value=1.7e+02 Score=23.66 Aligned_cols=31 Identities=19% Similarity=0.337 Sum_probs=28.1
Q ss_pred HHHHHHhhCCCCCChHHHHHHHHHHHHHHHH
Q psy5058 75 LREQIQMNNPISRSGETAIEYFDLMAKFTDE 105 (377)
Q Consensus 75 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 105 (377)
|+-+|..|.++-.+-.+-..+.+|+..|+..
T Consensus 24 l~REi~DnekKIRDNqKRVlLLdNL~~YIk~ 54 (104)
T PRK05423 24 LQREIQDNEKKIRDNQKRVLLLDNLSDYIKP 54 (104)
T ss_pred HHHHHHhhHHHhhhhHHHHHHHHHHHHHcCC
Confidence 8888999999999999999999999999864
No 47
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=32.76 E-value=2.4e+02 Score=22.11 Aligned_cols=42 Identities=12% Similarity=0.211 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHcc
Q psy5058 159 TIQMYAAHLAQKAHELKREKHKSDTLLVQMLPPSVAMQLKQT 200 (377)
Q Consensus 159 ~~~~~~~~l~~~~~~l~~ek~~~~~lL~~~lP~~v~~~L~~~ 200 (377)
........+..+..+++.+.++..--..++-.|.-++++-..
T Consensus 39 ~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~~~rIe~iA~~ 80 (97)
T PF04999_consen 39 QLFYELQQLEKEIDQLQEENERLRLEIATLSSPSRIERIARE 80 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 333334445555555666655554444555566666665543
No 48
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=30.86 E-value=1.5e+02 Score=25.06 Aligned_cols=15 Identities=33% Similarity=0.324 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHH
Q psy5058 142 VLMVSPIIILLVRNA 156 (377)
Q Consensus 142 v~~~~~~i~~~~~~~ 156 (377)
.++++.++.+++.+.
T Consensus 5 ~lvvG~iiG~~~~r~ 19 (128)
T PF06295_consen 5 GLVVGLIIGFLIGRL 19 (128)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445555554444
No 49
>PRK11677 hypothetical protein; Provisional
Probab=30.55 E-value=1.8e+02 Score=24.99 Aligned_cols=48 Identities=10% Similarity=0.187 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5058 136 IAILILVLMVSPIIILLVRNAVTTIQMYAAHLAQKAHELKREKHKSDT 183 (377)
Q Consensus 136 i~~~v~v~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~l~~ek~~~~~ 183 (377)
++.+++.++++.++..+..+....-......+.+...++++.++...+
T Consensus 7 ~i~livG~iiG~~~~R~~~~~~~~q~~le~eLe~~k~ele~YkqeV~~ 54 (134)
T PRK11677 7 LIGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNKAELEEYRQELVS 54 (134)
T ss_pred HHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666655544333333334444444555555554433
No 50
>COG1353 Predicted CRISPR-associated polymerase [Defense mechanisms]
Probab=30.41 E-value=2.3e+02 Score=31.74 Aligned_cols=116 Identities=16% Similarity=0.206 Sum_probs=70.9
Q ss_pred eeeEEEEEEEcCCchhHhhhCCh-------HHHHHHHHHHHHHHHHHhhh---------------CCeEEEEEeCCeEEE
Q psy5058 208 YEAVTVYFSDIVGFTEIAAVSTP-------LEVVNFLNSIYKLFDARIEG---------------YDVYKVETIGDSYMV 265 (377)
Q Consensus 208 ~~~vTVLF~DI~gFT~ls~~~~p-------~elv~lLn~~~~~~~~ii~~---------------~gG~~ik~iGD~~ma 265 (377)
..-+.++-+|.-++..+....-. .....+++-+|......+.. ..|+++---||-+++
T Consensus 519 ~~~~~~lk~DvD~mGk~~~~~~~~~~is~~s~~s~~~s~ff~~~~~~i~~~~~~~~~~~~~~~~~~~~~iVYsGGDDvla 598 (799)
T COG1353 519 TKYLAILKMDVDNMGKLFSEGLKKDTISRYSTFSRMLSLFFRGYLNKIAEDIRFRVLPSPLLDEDPNGYIVYSGGDDVLA 598 (799)
T ss_pred cceeEEEEecHHHHHHHHHhhccccchhhhccchHHHHHHHHHHHHHHhhchhhhhccccccCCCCcEEEEEecCCceEE
Confidence 34588999999999888765222 22345555555444443332 358888888999999
Q ss_pred EeCCCCCCCchhHHHHHHHHHHHHHhhccCCCCCCCCCceeEEEEeeeccEEEEEeCCCCCcceeeCcHHHHHHHHHhcC
Q psy5058 266 ASGLPMKNGDKHVSEIATMALDLLAGSIMFPIPHRKNERVQIRSGMHTGPVVAGIVGTKMPRYCLFGDTVNTASRMESTG 345 (377)
Q Consensus 266 ~fG~p~~~~d~~a~~a~~aAl~i~~~~~~~~~~~~~~~~l~irIGIhtG~vv~G~iGs~~~~y~v~GdtVNiAsRLes~a 345 (377)
+. +..++..+|.++......+... .+.+.+.+ |-++ ++.+.| +++.+..|..++.-+
T Consensus 599 ~g---------~~d~vld~a~el~~~F~~~~~~---~~~~t~Sa----Gi~i---~h~k~P----l~~~~~~~~~~e~~A 655 (799)
T COG1353 599 VG---------PWDDVLDFAKELRELFSEFTGK---NPKLTLSA----GIVI---VHHKFP----LYFALREARELEEEA 655 (799)
T ss_pred ec---------cHHHHHHHHHHHHHHHHHHhcC---CCceeEEE----EEEE---ecCCCh----HHHHHHHHHHHHHHH
Confidence 87 5678889999998887765422 22333333 3333 344444 445555555555444
Q ss_pred C
Q psy5058 346 E 346 (377)
Q Consensus 346 ~ 346 (377)
+
T Consensus 656 K 656 (799)
T COG1353 656 K 656 (799)
T ss_pred H
Confidence 3
No 51
>PF05165 GGDN: GGDN family; InterPro: IPR007839 GTP cyclohydrolase III catalyses the formation of 2-amino-5-formylamino-6- ribofuranosylamino-4(3H)-pyrimidinone ribonucleotide monophosphate and inorganic phosphate from GTP. The enzyme also has an independent pyrophosphate phosphohydrolase activity. The proteins are 200-270 amino acids in length.; GO: 0003933 GTP cyclohydrolase activity, 0009058 biosynthetic process; PDB: 2QV6_B.
Probab=29.48 E-value=4.5e+02 Score=25.01 Aligned_cols=54 Identities=9% Similarity=0.126 Sum_probs=41.1
Q ss_pred EEEcCCchhHhhhCChH---HHHHHHHHHHHHHHHHhhhCCeEEEEEeCCeEEEEeC
Q psy5058 215 FSDIVGFTEIAAVSTPL---EVVNFLNSIYKLFDARIEGYDVYKVETIGDSYMVASG 268 (377)
Q Consensus 215 F~DI~gFT~ls~~~~p~---elv~lLn~~~~~~~~ii~~~gG~~ik~iGD~~ma~fG 268 (377)
-..|.||-+|++.+.|. ++-.+=.+++..+.+.+...||.+..+-=|-++++..
T Consensus 3 ~i~l~~Y~eWTetlg~~RE~~iQ~lQa~l~~~l~~~~~~~~g~~~~~R~D~~iavtn 59 (246)
T PF05165_consen 3 LIQLDNYREWTETLGPDREWDIQTLQARLYADLQQFFSSRGGLVFPTRYDNMIAVTN 59 (246)
T ss_dssp EEEETTHHHHCCSSS---HHHHHHHHHHHHHHHHHHHHTTT-EEE-TTSSEEEEE-T
T ss_pred eEEecCCccCcCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCEEeeeeeeeEEEeec
Confidence 35789999999999874 3445557788999999999999999999999988863
No 52
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=28.20 E-value=2.4e+02 Score=20.84 Aligned_cols=36 Identities=19% Similarity=0.270 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-CCHHHHHHHH
Q psy5058 163 YAAHLAQKAHELKREKHKSDTLLVQM-LPPSVAMQLK 198 (377)
Q Consensus 163 ~~~~l~~~~~~l~~ek~~~~~lL~~~-lP~~v~~~L~ 198 (377)
....+..+..+++.+....+.-+..+ -.|.-++++.
T Consensus 25 ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~A 61 (80)
T PF04977_consen 25 EIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVA 61 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 33444555556666666666555555 4555444443
No 53
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=26.36 E-value=3.9e+02 Score=22.36 Aligned_cols=34 Identities=9% Similarity=0.095 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5058 152 LVRNAVTTIQMYAAHLAQKAHELKREKHKSDTLL 185 (377)
Q Consensus 152 ~~~~~~~~~~~~~~~l~~~~~~l~~ek~~~~~lL 185 (377)
+..+....+......+.....+.++.+...+.++
T Consensus 26 l~~pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~ 59 (140)
T PRK07353 26 FYKPVGKVVEEREDYIRTNRAEAKERLAEAEKLE 59 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444443333
No 54
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=25.98 E-value=4e+02 Score=23.45 Aligned_cols=18 Identities=0% Similarity=-0.018 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy5058 154 RNAVTTIQMYAAHLAQKA 171 (377)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~ 171 (377)
.+....+......+....
T Consensus 41 ~pi~~~l~~R~~~I~~~l 58 (173)
T PRK13453 41 GPLKDVMDKRERDINRDI 58 (173)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444443333
No 55
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=24.20 E-value=4.4e+02 Score=23.06 Aligned_cols=31 Identities=19% Similarity=0.394 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5058 154 RNAVTTIQMYAAHLAQKAHELKREKHKSDTL 184 (377)
Q Consensus 154 ~~~~~~~~~~~~~l~~~~~~l~~ek~~~~~l 184 (377)
......+......+.....+.++.++..+.+
T Consensus 33 ~pi~~~le~R~~~I~~~l~~Ae~~k~eAe~~ 63 (167)
T PRK14475 33 KALAGALDAYAAKIQAELDEAQRLREEAQAL 63 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455444444444444444444443333
No 56
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=24.11 E-value=4.8e+02 Score=22.91 Aligned_cols=25 Identities=4% Similarity=0.090 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5058 156 AVTTIQMYAAHLAQKAHELKREKHK 180 (377)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~l~~ek~~ 180 (377)
....+......+.....+.++.+.+
T Consensus 41 i~~~l~~R~~~I~~~l~~Ae~~~~e 65 (173)
T PRK13460 41 ILKALDERASGVQNDINKASELRLE 65 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444333333333333
No 57
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=21.77 E-value=3.8e+02 Score=20.62 Aligned_cols=15 Identities=33% Similarity=0.879 Sum_probs=6.6
Q ss_pred hHHHHHHHHHHHHHH
Q psy5058 136 IAILILVLMVSPIII 150 (377)
Q Consensus 136 i~~~v~v~~~~~~i~ 150 (377)
+.+++++++++++..
T Consensus 8 ~Pliif~ifVap~wl 22 (75)
T TIGR02976 8 IPLIIFVIFVAPLWL 22 (75)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444454443
No 58
>KOG1666|consensus
Probab=21.43 E-value=6.7e+02 Score=23.37 Aligned_cols=51 Identities=12% Similarity=0.250 Sum_probs=28.7
Q ss_pred chhhhhHHHHHHHHHHHhhhCCCCCCcccCCCCC-CCcccccchHHHHHHHHHHHH
Q psy5058 20 EQNKSNLAARFRAVDQALESATTWPVIKVPPYNG-GNESVIANKEAFQVRLREFRI 74 (377)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 74 (377)
+..-+.+.+.+.+.+.-|+.|+ ..+.-... ....+..-..+|++.|..++.
T Consensus 35 k~~l~~i~~~leEa~ell~qMd----lEvr~lp~~~Rs~~~~KlR~yksdl~~l~~ 86 (220)
T KOG1666|consen 35 KQLLSEIDSKLEEANELLDQMD----LEVRELPPNFRSSYLSKLREYKSDLKKLKR 86 (220)
T ss_pred HHHHHHHHHhHHHHHHHHHHHH----HHHHhCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888882 22111111 122333344667776666554
No 59
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=21.05 E-value=1e+02 Score=25.91 Aligned_cols=10 Identities=40% Similarity=0.640 Sum_probs=4.0
Q ss_pred chhhHHHHHH
Q psy5058 133 YVGIAILILV 142 (377)
Q Consensus 133 ~~~i~~~v~v 142 (377)
|+.++++|++
T Consensus 2 W~l~~iii~~ 11 (130)
T PF12273_consen 2 WVLFAIIIVA 11 (130)
T ss_pred eeeHHHHHHH
Confidence 3434443333
No 60
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.15 E-value=7.4e+02 Score=23.40 Aligned_cols=82 Identities=16% Similarity=0.231 Sum_probs=47.4
Q ss_pred eeEEEEEEEcCCchhHhhhCChHHHHHHHHHHHHHHHHHhhh--CCeEEEEEeCCeEEEEeCCCCCCCchhHHHHHHHHH
Q psy5058 209 EAVTVYFSDIVGFTEIAAVSTPLEVVNFLNSIYKLFDARIEG--YDVYKVETIGDSYMVASGLPMKNGDKHVSEIATMAL 286 (377)
Q Consensus 209 ~~vTVLF~DI~gFT~ls~~~~p~elv~lLn~~~~~~~~ii~~--~gG~~ik~iGD~~ma~fG~p~~~~d~~a~~a~~aAl 286 (377)
+.+|+..-.+.+|. -+++|+-.+++-+...+.+.+.. -.|..++++||- -.+| ....++++-+-
T Consensus 55 ~~lTvYaFS~EN~~-----R~~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~iGd~----~~Lp-----~~l~~~i~~~e 120 (239)
T PRK14839 55 GTLTLYAFSSDNWR-----RPAAEVGGLMRLLRAYLRNETERLARNGVRLTVIGRR----DRLP-----DGIPEAIARAE 120 (239)
T ss_pred CEEEEEEechhhcC-----CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeCh----hhCC-----HHHHHHHHHHH
Confidence 56898887777773 46777666665555444443332 247788999995 2344 24444444333
Q ss_pred HHHHhhccCCCCCCCCCceeEEEEeeec
Q psy5058 287 DLLAGSIMFPIPHRKNERVQIRSGMHTG 314 (377)
Q Consensus 287 ~i~~~~~~~~~~~~~~~~l~irIGIhtG 314 (377)
+.- ..+..+.+-|.+++|
T Consensus 121 ~~T----------~~n~~~~Lnia~~Yg 138 (239)
T PRK14839 121 AAT----------AGGDRLHLRIAVDYS 138 (239)
T ss_pred HHh----------cCCCceEEEEEecCC
Confidence 332 224456777777664
Done!