RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5058
(377 letters)
>3uvj_A Guanylate cyclase soluble subunit alpha-3; nitric oxide, structural
genomics, structural genomics conso SGC, CGMP
biosynthesis; 2.08A {Homo sapiens}
Length = 225
Score = 307 bits (789), Expect = e-105
Identities = 79/179 (44%), Positives = 104/179 (58%), Gaps = 3/179 (1%)
Query: 199 QTQQVPAEYYEAVTVYFSDIVGFTEIAAVSTPLEVVNFLNSIYKLFDARIEGYDVYKVET 258
Q Q V A+ + VT+ FSDIVGFT I + +PL+V+ LN++Y FD + DVYKVET
Sbjct: 3 QGQVVQAKKFSNVTMLFSDIVGFTAICSQCSPLQVITMLNALYTRFDQQCGELDVYKVET 62
Query: 259 IGDSYMVASGLPMKNGDKHVSEIATMALDLLAGSIMFPIPHRKNERVQIRSGMHTGPVVA 318
IGD+Y VA GL K D H +IA MAL ++ S PH E +++R G+H+G V A
Sbjct: 63 IGDAYCVAGGLH-KESDTHAVQIALMALKMMELSDEVMSPH--GEPIKMRIGLHSGSVFA 119
Query: 319 GIVGTKMPRYCLFGDTVNTASRMESTGEALKIHISAEVKEALDVIGGFRTEHRGSNYTK 377
G+VG KMPRYCLFG+ V A++ ES KI++S L GF R
Sbjct: 120 GVVGVKMPRYCLFGNNVTLANKFESCSVPRKINVSPTTYRLLKDCPGFVFTPRSREELP 178
>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics,
PSI, protein structure initiative; 2.70A {Mycobacterium
tuberculosis}
Length = 204
Score = 294 bits (756), Expect = e-100
Identities = 71/172 (41%), Positives = 101/172 (58%), Gaps = 5/172 (2%)
Query: 201 QQVPAEYYEAVTVYFSDIVGFTEIAAVSTPLEVVNFLNSIYKLFDARIEGYDVYKVETIG 260
+ + A+ Y+ +V F+DIVGFTE A+ + P ++V FL+ +Y FD ++ + + K+E G
Sbjct: 1 RNIIADKYDEASVLFADIVGFTERASSTAPADLVRFLDRLYSAFDELVDQHGLEKIEVSG 60
Query: 261 DSYMVASGLPMKNGDKHVSEIATMALDLLAGSIMFPIPHRKNERVQIRSGMHTGPVVAGI 320
DSYMV SG+P D H +A ALD+ + P V +R G+ TGPVVAG+
Sbjct: 61 DSYMVVSGVPRPRPD-HTQALADFALDMTNVAAQLKDPR--GNPVPLRVGLATGPVVAGV 117
Query: 321 VGTKMPRYCLFGDTVNTASRMESTGEALKIHISAEVKEALDVIGGFRTEHRG 372
VG++ RYC++GD VN ASRMEST +I + EV E L F RG
Sbjct: 118 VGSRRFRYCVWGDAVNVASRMESTDSVGQIQVPDEVYERLK--DDFVLRERG 167
>2wz1_A Guanylate cyclase soluble subunit beta-1; lyase, GUCY1,
metal-binding, CGMP biosynthesis, nucleotide-B cyclase,
GUCY1B3, GTP-binding; 1.63A {Homo sapiens} PDB: 3uvj_B
Length = 219
Score = 286 bits (733), Expect = 1e-96
Identities = 76/185 (41%), Positives = 102/185 (55%), Gaps = 15/185 (8%)
Query: 199 QTQQVPAEYYEAVTVYFSDIVGFTEIAAVSTP----LEVVNFLNSIYKLFDARIEGYD-- 252
+ VPA+ Y+ VT+ FS IVGF + +++VN LN +Y FD +
Sbjct: 1 HKRPVPAKRYDNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNP 60
Query: 253 -VYKVETIGDSYMVASGLPMKNGDKHVSEIATMALDLLAGSIMFPIPHRKNERVQIRSGM 311
VYKVET+GD YM SGLP + H I +ALD++ + + E VQI G+
Sbjct: 61 FVYKVETVGDKYMTVSGLP-EPCIHHARSICHLALDMMEIAGQVQVDG---ESVQITIGI 116
Query: 312 HTGPVVAGIVGTKMPRYCLFGDTVNTASRMESTGEALKIHISAEVKEAL----DVIGGFR 367
HTG VV G++G +MPRYCLFG+TVN SR E+TGE KI++S L + F
Sbjct: 117 HTGEVVTGVIGQRMPRYCLFGNTVNLTSRTETTGEKGKINVSEYTYRCLMSPENSDPQFH 176
Query: 368 TEHRG 372
EHRG
Sbjct: 177 LEHRG 181
>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic,
lyase, membrane, transmembrane; 2.55A {Chlamydomonas
reinhardtii} PDB: 3et6_B
Length = 190
Score = 271 bits (696), Expect = 2e-91
Identities = 87/171 (50%), Positives = 107/171 (62%), Gaps = 4/171 (2%)
Query: 203 VPAEYYEAVTVYFSDIVGFTEIAAVSTPLEVVNFLNSIYKLFDARIEGY-DVYKVETIGD 261
PA+ + TV FSDIVGFTEIA+ S+PLEV + L+ +Y+ FDA IE Y +YKVETIGD
Sbjct: 2 APAQEHPEATVLFSDIVGFTEIASRSSPLEVXSLLDELYQRFDAAIEEYPQLYKVETIGD 61
Query: 262 SYMVASGLPMKNGDKHVSEIATMALDLLAGSIMFPIPHRKNERVQIRSGMHTGPVVAGIV 321
+YMV + + D H + AL + + E V+IR GMH+GPVVAG+V
Sbjct: 62 AYMVVCNVTVPCDD-HADVLLEFALRMH--EEASRVASSLGEPVRIRVGMHSGPVVAGVV 118
Query: 322 GTKMPRYCLFGDTVNTASRMESTGEALKIHISAEVKEALDVIGGFRTEHRG 372
G KMPR+ LFGDTVNTASRMES GEA +IHIS L F RG
Sbjct: 119 GRKMPRFXLFGDTVNTASRMESHGEAGQIHISEACYCCLRSKERFEIRERG 169
>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET: FOK;
2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB: 1azs_B*
1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B* 1u0h_B*
2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B* 3g82_B*
3maa_B* 1cul_B*
Length = 220
Score = 272 bits (697), Expect = 3e-91
Identities = 58/191 (30%), Positives = 92/191 (48%), Gaps = 20/191 (10%)
Query: 199 QTQQVPAEYYEAVTVYFSDIVGFTEIAAVS----TPLEVVNFLNSIYKLFDARIE---GY 251
+ +++ + Y+ V V F+ I F E S LE + LN I FD +
Sbjct: 3 KNEELYHQSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFS 62
Query: 252 DVYKVETIGDSYMVASGLPMKNGDKHVSE----------IATMALDLLAGSIMFPIPHRK 301
V K++TIG +YM A+GL +H E + A L+ + I
Sbjct: 63 GVEKIKTIGSTYMAATGLSAIPSQEHAQEPERQYMHIGTMVEFAYALV--GKLDAINKHS 120
Query: 302 NERVQIRSGMHTGPVVAGIVGTKMPRYCLFGDTVNTASRMESTGEALKIHISAEVKEALD 361
++R G++ GPV+AG++G + P+Y ++G+TVN ASRM+STG KI ++ E L
Sbjct: 121 FNDFKLRVGINHGPVIAGVIGAQKPQYDIWGNTVNVASRMDSTGVLDKIQVTEETSLILQ 180
Query: 362 VIGGFRTEHRG 372
+ G+ RG
Sbjct: 181 TL-GYTCTCRG 190
>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A*
1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A*
3g82_A* 3maa_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A*
1tl7_A*
Length = 220
Score = 271 bits (696), Expect = 4e-91
Identities = 48/199 (24%), Positives = 92/199 (46%), Gaps = 8/199 (4%)
Query: 174 LKREKHKSDTLLVQMLPPSVAMQLKQTQQVPAEYYEAVTVYFSDIVGFTEIAAVSTPLEV 233
+ H + + + M + + + ++ V++ F+DI GFT +A+ T E+
Sbjct: 1 MHHHHHHAMEMKADINAKQEDMMFHK---IYIQKHDNVSILFADIEGFTSLASQCTAQEL 57
Query: 234 VNFLNSIYKLFDARIEGYDVYKVETIGDSYMVASGLPMKNGDKHVSEIATMALDLLAGSI 293
V LN ++ FD +++ +GD Y SGLP D H M +D++
Sbjct: 58 VMTLNELFARFDKLAAENHCLRIKILGDCYYCVSGLPEARAD-HAHCCVEMGMDMI--EA 114
Query: 294 MFPIPHRKNERVQIRSGMHTGPVVAGIVGTKMPRYCLFGDTVNTASRMESTGEALKIHIS 353
+ + V +R G+H+G V G++G + ++ ++ + V A+ ME+ G+A +IHI+
Sbjct: 115 ISLVREMTGVNVNMRVGIHSGRVHCGVLGLRKWQFDVWSNDVTLANHMEAGGKAGRIHIT 174
Query: 354 AEVKEALDVIGGFRTEHRG 372
L+ G + E
Sbjct: 175 KATLSYLN--GDYEVEPGC 191
>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase;
HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB:
1y11_A*
Length = 407
Score = 178 bits (453), Expect = 2e-52
Identities = 43/213 (20%), Positives = 81/213 (38%), Gaps = 27/213 (12%)
Query: 164 AAHLAQKAHELKREKHKSDTLLVQMLPPSVAMQLKQTQQVPAEYYEAVTVYFSDIVGFTE 223
+ + + ++ L M+ ++ P VTV F+D+VGFT+
Sbjct: 171 VSQIVPLLGPMIQDMLF--MQLRHMMETEAVNAGERAAGKPLPGARQVTVAFADLVGFTQ 228
Query: 224 IAAVSTPLEVVNFLNSIYKLFDARIEGYDVYKVETIGDSYMVASGLPMKNGDKHVSEIAT 283
+ V + E+ + + L + V+ ++TIGD+ M+ P + +
Sbjct: 229 LGEVVSAEELGHLAGRLAGLARD-LTAPPVWFIKTIGDAVMLVCPDP--------APLLD 279
Query: 284 MALDLLAGSIMFPIPHRKNERVQIRSGMHTGPVVAGIVGTKMPRYCLFGDTVNTASRMES 343
L L+ + N ++R+G+ +G V+ FG VN ASR+
Sbjct: 280 TVLKLVE------VVDTDNNFPRLRAGVASGMAVSR-------AGDWFGSPVNVASRVTG 326
Query: 344 TGEALKIHISAEVKEALD---VIGGFRTEHRGS 373
+ ++ V+EAL GF+ G
Sbjct: 327 VARPGAVLVADSVREALGDAPEADGFQWSFAGP 359
>1fx2_A Receptor-type adenylate cyclase gresag 4.1; CAMP, trypanosomes,
adenylyl cyclases, monomer-dimer, catalysis, lyase;
1.46A {Trypanosoma brucei} SCOP: d.58.29.1 PDB: 1fx4_A
Length = 235
Score = 169 bits (429), Expect = 7e-51
Identities = 42/202 (20%), Positives = 76/202 (37%), Gaps = 32/202 (15%)
Query: 200 TQQVPAEYYEAVTVYFSDIVGFTEIAAVSTPLEVVNFLNSIYKLFDARIEGYDVYKVETI 259
+ P E + VT+ F+DI T + A + P + + + + +++ + I Y Y+V+T+
Sbjct: 2 NNRAPKEPTDPVTLIFTDIESSTALWA-AHPDLMPDAVAAHHRMVRSLIGRYKCYEVKTV 60
Query: 260 GDSYMVASGLPMKNGDKHVSEIATMALDLLAGSIMFPIPHRKNER--------------- 304
GDS+M+AS P E+ L G+ +R+ E
Sbjct: 61 GDSFMIASKSPFAAVQ-LAQELQLCFLHHDWGTNALDDSYREFEEQRAEGECEYTPPTAH 119
Query: 305 ------------VQIRSGMHTGPVVAGIVGTKMPRYCLFGDTVNTASRMESTGEALKIHI 352
+++R G+HTG Y +G T N A+R ES ++ +
Sbjct: 120 MDPEVYSRLWNGLRVRVGIHTGLCDIRHDEV-TKGYDYYGRTPNMAARTESVANGGQVLM 178
Query: 353 SAEVKEALDVI--GGFRTEHRG 372
+ +L G
Sbjct: 179 THAAYMSLSAEDRKQIDVTALG 200
>1ybt_A Hydrolase, alpha/beta hydrolase fold family; cyclase homology
domain, CHD, RV1900C; 2.31A {Mycobacterium tuberculosis}
PDB: 1ybu_A*
Length = 184
Score = 92.7 bits (231), Expect = 2e-22
Identities = 32/162 (19%), Positives = 62/162 (38%), Gaps = 20/162 (12%)
Query: 211 VTVYFSDIVGFTEIAAVSTPLEVVNFLNSIYKLFDARIEGYDVYKVETIGDSYMVASGLP 270
T+ F+DIVG T+ AA + L++ + I+ + +V T GD ++ P
Sbjct: 18 ATIMFTDIVGSTQHAAALGDDRWRDLLDNHDTIVCHEIQRFGGREVNTAGDGFVATFTSP 77
Query: 271 MKNGDKHVSEIATMALDLLAGSIMFPIPHRKNERVQIRSGMHTGPVVAGIVGTKMPRYCL 330
S A D++ +++R G+H G V +
Sbjct: 78 --------SAAIACADDIVDAV--------AALGIEVRIGIHAGEVEVRDASH---GTDV 118
Query: 331 FGDTVNTASRMESTGEALKIHISAEVKEALDVIGGFRTEHRG 372
G V+ +R+ + ++ +S+ V++ + R RG
Sbjct: 119 AGVAVHIGARVCALAGPSEVLVSSTVRDIVAG-SRHRFAERG 159
>3mr7_A Adenylate/guanylate cyclase/hydrolase, alpha/beta family;
alpha-beta fold, structural genomics, PSI-2, protein
structu initiative; 2.60A {Ruegeria pomeroyi}
Length = 189
Score = 89.6 bits (223), Expect = 2e-21
Identities = 31/162 (19%), Positives = 55/162 (33%), Gaps = 15/162 (9%)
Query: 211 VTVYFSDIVGFTEIAAVSTPLEVVNFLNSIYKLFDARIEGYDVYKVETIGDSYMVASGLP 270
+ +D+ G++ + + + +L D I V+T GD +
Sbjct: 8 CAILAADMAGYSRLMERNETDVLNRQKLYRRELIDPAIAQAGGQIVKTTGDGMLARFD-- 65
Query: 271 MKNGDKHVSEIATMALDLLAGSIMFPIPHRKNERVQIRSGMHTGPVVAGIVGTKMPRYCL 330
AL++ + ER+Q R G++ G +V +
Sbjct: 66 ------TAQAALRCALEIQQAMQQREEDTPRKERIQYRIGINIGDIVLE-------DGDI 112
Query: 331 FGDTVNTASRMESTGEALKIHISAEVKEALDVIGGFRTEHRG 372
FGD VN A+R+E+ E I +S V + G
Sbjct: 113 FGDAVNVAARLEAISEPGAICVSDIVHQITQDRVSEPFTDLG 154
>3r5g_A CYAB; adenylyl cyclase, lyase; 1.50A {Pseudomonas aeruginosa}
Length = 198
Score = 89.1 bits (222), Expect = 4e-21
Identities = 47/160 (29%), Positives = 69/160 (43%), Gaps = 15/160 (9%)
Query: 211 VTVYFSDIVGFTEIAAVSTPLEVVNFLNSIYKLFDARIEGY----DVYKVETIGDSYMVA 266
+TV+FSDI GFTE++ + + LN+ Y D + +GD MV
Sbjct: 10 LTVFFSDIRGFTELSEELEAEALTDLLNNYLNEMSKIALKYGGTIDKF----VGDCVMVF 65
Query: 267 SGLPMKNGDK-HVSEIATMALDLLAGSIMFPIPHRKN---ERVQIRSGMHTGPVVAGIVG 322
G P G K +M + + + R + ++IR G++TG G G
Sbjct: 66 FGDPSTQGAKKDAVAAVSMGIAMRKHMKVLRQQWRAQGITKPLEIRMGINTGYCTVGNFG 125
Query: 323 TKMPR--YCLFGDTVNTASRMESTGEALKIHISAEVKEAL 360
R Y + G VN ASR+ES EA +I IS E +
Sbjct: 126 ADT-RMDYTIIGREVNLASRLESASEAGEILISHETYSLI 164
>2w01_A Adenylate cyclase; guanylyl cyclase, class III nucleotidyl cyclase,
lyase; 2.31A {Synechocystis SP}
Length = 208
Score = 89.2 bits (222), Expect = 5e-21
Identities = 40/158 (25%), Positives = 66/158 (41%), Gaps = 14/158 (8%)
Query: 211 VTVYFSDIVGFTEIAAVSTPLEVVNFLNSIYKLFDARIEGY----DVYKVETIGDSYMVA 266
+T+ SD+ GFT + P EVV LN + I + D + +GD +V
Sbjct: 15 ITILTSDLRGFTSTSEGLNPEEVVKVLNIYFGKMADVITHHGGTIDEF----MGDGILVL 70
Query: 267 SGLPMKNGDKHVSEIATMALDLLAGSIMF--PIPHRKNERVQIRSGMHTGPVVAGIVGTK 324
G P D +++ + + +++ G++TG VV G +G++
Sbjct: 71 FGAPTSQQD-DALRAVACGVEMQLALREVNQQVTGLGLQPLEMGIGINTGEVVVGNIGSE 129
Query: 325 MPR--YCLFGDTVNTASRMESTGEALKIHISAEVKEAL 360
R Y + G VN R+ES +I IS+ EA
Sbjct: 130 K-RTKYGVVGAQVNLTYRIESYTTGGQIFISSTTLEAA 166
>1wc3_A Adenylate cyclase; soluble adenylyl cyclase, CAMP signaling, lyase;
HET: APC; 1.9A {Spirulina platensis} SCOP: d.58.29.1
PDB: 1wc0_A* 1wc4_A* 1wc5_A* 2bw7_A* 1wc1_A* 1wc6_A*
Length = 219
Score = 86.5 bits (215), Expect = 6e-20
Identities = 39/168 (23%), Positives = 65/168 (38%), Gaps = 26/168 (15%)
Query: 211 VTVYFSDIVGFTEIAAVSTPLEVVNFLNSIYKLFDA---RIEGY----DVYKVETIGDSY 263
+T+ FSDIVGFT ++ V LN + + D + +GD+
Sbjct: 28 ITILFSDIVGFTRMSNALQSQGVAELLN---EYLGEMTRAVFENQGTVDKF----VGDAI 80
Query: 264 MVASGLPMKNGDK-HVSEIATMALDLLAG--------SIMFPIPHRKNERVQIRSGMHTG 314
M G P + V A +L + + V+ R G+H G
Sbjct: 81 MALYGAPEEMSPSEQVRRAIATARQMLVALEKLNQGWQERGLVGRNEVPPVRFRCGIHQG 140
Query: 315 PVVAGIVGTKMPR--YCLFGDTVNTASRMESTGEALKIHISAEVKEAL 360
V G+ G++ R + G +VN A+R++ I +SA V + +
Sbjct: 141 MAVVGLFGSQE-RSDFTAIGPSVNIAARLQEATAPNSIMVSAMVAQYV 187
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.4 bits (151), Expect = 1e-10
Identities = 67/440 (15%), Positives = 133/440 (30%), Gaps = 185/440 (42%)
Query: 26 LAARF-----RAVDQALESATTWPVIKV------PPYNGGNE--SVIAN--KEAFQVRLR 70
L +F V+ + + V+ + Y GN+ ++ A +E ++
Sbjct: 60 LVGKFLGYVSSLVEPS-KVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVK 118
Query: 71 EFRILRE----QIQMNNPISRSGETAI----------------------EYFDLMAKFTD 104
+++ +I P + +A+ +YF+
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE------- 171
Query: 105 ELRK-------------------LQRELRSQIKK--------NVEADLENAN---NQEYV 134
ELR L +R+ + N+ LEN + +++Y
Sbjct: 172 ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY- 230
Query: 135 GIAILILVLMVS-PIIILLVRNAVTTIQMYAAHLAQKAHELKREKHKSDTLLVQMLPPSV 193
L+ + +S P+I ++ Q+ AH A L P +
Sbjct: 231 ----LLSIP-ISCPLIGVI--------QL--AHYVVTAKLL------------GFTPGEL 263
Query: 194 AMQLKQTQQVPAEYYEAVTVYFSDIVGFTEIAAVSTPLEVVNFLNSIYK----LFDARIE 249
LK T + +V IA + +F S+ K LF +
Sbjct: 264 RSYLK-----------GATGHSQGLVTAVAIAETDS---WESFFVSVRKAITVLFFIGVR 309
Query: 250 GYDVYKVETI-----------GD---SYMVA-SGLPMKNGDKHVSEIATMALDLLAGSIM 294
Y+ Y ++ + S M++ S L + +V++ +
Sbjct: 310 CYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNS----------H 359
Query: 295 FPIPHRKNERVQIRSGMHTGP---VVAGIVGTKMPRYCLFGDTVNTA------------S 339
P ++V+I + G VV+G P L+G +N S
Sbjct: 360 LP----AGKQVEI--SLVNGAKNLVVSG------PPQSLYG--LNLTLRKAKAPSGLDQS 405
Query: 340 RMESTGEALKIH-----ISA 354
R+ + LK +++
Sbjct: 406 RIPFSERKLKFSNRFLPVAS 425
Score = 41.6 bits (97), Expect = 5e-04
Identities = 42/291 (14%), Positives = 85/291 (29%), Gaps = 111/291 (38%)
Query: 55 NESVIANKEAFQ---VRLRE---FRILREQIQMNNPIS--------RSGETAIEY----F 96
S A ++ + ++ F IL I +NNP++ + Y F
Sbjct: 1637 KTSKAA-QDVWNRADNHFKDTYGFSIL--DIVINNPVNLTIHFGGEKGKRIRENYSAMIF 1693
Query: 97 DLMAKFTDELRKLQRELRSQIKKNV----EADL---ENANNQEYVGIAILILVLMVSPII 149
+ + + K+ +E+ + L + Q A+ + +
Sbjct: 1694 ETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT--Q----PALTL----MEKAA 1743
Query: 150 ILLVRNA--VTTIQMYAAH-------LAQKAHEL----------KR-----------EKH 179
+++ + +A H LA A + R E
Sbjct: 1744 FEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELG 1803
Query: 180 KSDTLLVQMLPPSVAMQLKQTQQVPAEYYEAVTVYFSDIVGFTEIAAVST-PLEVVNFLN 238
+S+ ++ + P VA Q EA+ +V + + +E+VN+ N
Sbjct: 1804 RSNYGMIAINPGRVAASFSQ---------EAL----QYVV--ERVGKRTGWLVEIVNY-N 1847
Query: 239 SIYKLFDARIEGYDVYKVETIGDSYMVASGLPMKNGDKHVSEIATMALDLL 289
E + VA+ GD + T L+ +
Sbjct: 1848 V---------EN------QQY-----VAA------GDLRALDTVTNVLNFI 1872
Score = 38.1 bits (88), Expect = 0.005
Identities = 40/202 (19%), Positives = 65/202 (32%), Gaps = 68/202 (33%)
Query: 195 MQLKQTQQVPAEYYEAVTVYFSDIVGFTEIAAVSTPLEVVNFLNSIYKLFDA----RI-E 249
M L +T + + + +F D GF+ I + V+N ++ F RI E
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFKDTYGFS-ILDI-----VINNPVNLTIHFGGEKGKRIRE 1686
Query: 250 GYDVYKVETIGDSYMVASGLPMKNGDKHVSEI----------ATM----ALDLLAGSIMF 295
Y ETI D + + K ++H + AT AL L F
Sbjct: 1687 NYSAMIFETIVDGKLKTEKI-FKEINEHSTSYTFRSEKGLLSATQFTQPAL-TLMEKAAF 1744
Query: 296 PIPHRKNERVQIRSGMHTGPVVAGIVGTKMPRYCLFGDTVNTASRMESTGE--ALKIHIS 353
E ++ + + AG S GE AL
Sbjct: 1745 -------EDLKSKGLIPADATFAG----------------------HSLGEYAAL--ASL 1773
Query: 354 AEV---KEALDVIGGFRTEHRG 372
A+V + ++V+ +RG
Sbjct: 1774 ADVMSIESLVEVV-----FYRG 1790
Score = 32.3 bits (73), Expect = 0.35
Identities = 39/278 (14%), Positives = 71/278 (25%), Gaps = 98/278 (35%)
Query: 36 ALESATTWPVIKVPPYNGGNESVIANKEAFQVRLREFRILREQIQMNNPISRSGETAIEY 95
+LE V P + S + +E F L E + P + E
Sbjct: 15 SLE--HVLLV---PTASFFIASQL--QEQFNKILPE--PTEGFAADDEPTT-----PAE- 59
Query: 96 FDLMAKF----TDELRKLQRELRSQIKKNVEADLENANNQEYVGIAILILVLMVSPIIIL 151
L+ KF + + + Q+ + EN L
Sbjct: 60 --LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENC---------------------YL 96
Query: 152 LVRNAVTTIQMYAAHLAQKAHELKREKHKSDTLLVQMLPPSVAMQLKQTQQVPAEYYEAV 211
+ I AA L L +T+++ Y A
Sbjct: 97 EGND----IHALAAKL----------------------LQENDTTLVKTKELIKNYITAR 130
Query: 212 TV--------YFSDIV-----GFTEIAAVSTPLEVVNF----LNSIYKLFDARIEGYDVY 254
+ S + G ++ A+ F Y F+ + Y Y
Sbjct: 131 IMAKRPFDKKSNSALFRAVGEGNAQLVAI--------FGGQGNTDDY--FEELRDLYQTY 180
Query: 255 KVETIGDSYMVASGL--PMKNGDKHVSEIATMALDLLA 290
+GD ++ + ++ T L++L
Sbjct: 181 H-VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE 217
>3hls_A Guanylate cyclase soluble subunit beta-1; coiled-coil domain,
signaling helix, S-helix, CGMP biosynthesis, cytoplasm,
GTP-binding, heme, iron; 2.15A {Rattus norvegicus}
Length = 66
Score = 53.2 bits (128), Expect = 1e-09
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 160 IQMYAAHLAQKAHELKREKHKSDTLLVQMLPPSVAMQLKQ 199
++M L L+ EK K+DTLL +LPPSVA +L+
Sbjct: 26 LEMLTDRLQLTLRALEDEKKKTDTLLYSVLPPSVANELRH 65
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.2 bits (137), Expect = 5e-09
Identities = 46/327 (14%), Positives = 98/327 (29%), Gaps = 89/327 (27%)
Query: 23 KSNLAA---RFRAVDQALESATTWPVIKVPPYNGGN----ESVIANKEAFQVRLREFRIL 75
K+ +A V ++ W + + N E+V+ + ++
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFW--LNL-----KNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 76 REQIQMNNPISRSGETAIEYFDLMAKFTDELRKLQRELRSQIKKN---VEADLENANNQE 132
R +N R ELR+L L+S+ +N V +++NA
Sbjct: 216 RSD-HSSNIKLRIHS-----------IQAELRRL---LKSKPYENCLLVLLNVQNAKAWN 260
Query: 133 YVGIA--ILIL-----------VLMVSPIIILLVRNAVT---TIQMYAAHLAQKAHELKR 176
++ IL+ + I + +T + +L + +L R
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 177 EKHKSDTLLVQMLPPSV--------------AMQLKQTQQV------PAEYYEAVTVYFS 216
E ++ + ++ S+ +L + PAEY + F
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK----MFD 376
Query: 217 DIVGFTEIAAVSTPLEVVNFL--NSIYKLFDARIEGYDVYKVETIGDSYMVASGLPMKNG 274
+ F + P +++ + + I V + + + L K
Sbjct: 377 RLSVFPP--SAHIPTILLSLIWFDVIK------------SDVMVVVNK-LHKYSLVEKQP 421
Query: 275 DKHVSEIATMALDLLAGSIMFPIPHRK 301
+ I ++ L+L HR
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRS 448
Score = 38.3 bits (88), Expect = 0.004
Identities = 40/303 (13%), Positives = 90/303 (29%), Gaps = 90/303 (29%)
Query: 88 SGETAIEYFDLMAKFTDELRK------LQRELRSQIKKNVEAD----LENANNQEYVGIA 137
+GE +Y D+++ F D +Q +S + K E D ++A +
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKE-EIDHIIMSKDAVSGTLR--- 66
Query: 138 ILILVLMVSPIIILLVRNAVTTIQMYAAHLAQKAHELKREKHKSDTLLVQMLPPSVAMQL 197
+ L+ +Q + + + ++ L + +
Sbjct: 67 ----------LFWTLLSKQEEMVQKFVEEVLRINYKF--------------LMSPIKTEQ 102
Query: 198 KQTQQVPAEYYEAVTVYFSDIVGFTEIAAVSTPLEVVNFLNSIYKLFDAR---IEGYDVY 254
+Q + Y E ++D F + VS + ++ +L A+ I+G
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKY-NVSRLQPYLKLRQALLELRPAKNVLIDG---- 157
Query: 255 KVETIGDSYMVASGLPMKNGDKHVSEIATMALDLLAGS---IMFPIP---------HRKN 302
++ SG K +ALD+ +
Sbjct: 158 ---------VLGSG-------KTW-----VALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196
Query: 303 ERVQIRSGMHTGPVVAGIVGTKMPRYCLFGD-TVNTASRMESTGEALKIHISAEV-KEAL 360
+++ + P + D + N R+ S L+ + ++ + L
Sbjct: 197 TVLEMLQKLLY---------QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 361 DVI 363
V+
Sbjct: 248 LVL 250
Score = 28.3 bits (62), Expect = 6.1
Identities = 20/121 (16%), Positives = 37/121 (30%), Gaps = 31/121 (25%)
Query: 94 EYFDLMAK-FTDELRKLQRELR-SQIKKNVEADLENANNQ-----EYVGIAILILVLMVS 146
E L F D R L++++R N + N Q Y+ +V+
Sbjct: 488 ERMTLFRMVFLD-FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN 546
Query: 147 PIIILLVRNAVTTIQMYAAHLAQKAHELKREKHKSDTLLVQ--MLPPS---VAMQLKQTQ 201
I+ L + +L K+ L++ ++ KQ Q
Sbjct: 547 AILDFLPK--------IEENLI-------CSKYTD---LLRIALMAEDEAIFEEAHKQVQ 588
Query: 202 Q 202
+
Sbjct: 589 R 589
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 1.2
Identities = 12/74 (16%), Positives = 27/74 (36%), Gaps = 11/74 (14%)
Query: 60 ANKEAFQVRL-REFRILREQIQMNNPISRSGETAIEYFDLMAKFTDELRKLQRELRSQIK 118
+E +R RE + R+++Q + + + K +L + + Q++
Sbjct: 80 LTQEPESIRKWREEQ--RKRLQ-----ELDAASKVMEQEWREKAKKDLEEWNQRQSEQVE 132
Query: 119 KNVEADLENANNQE 132
KN N +
Sbjct: 133 KNKI---NNRIADK 143
Score = 29.0 bits (64), Expect = 2.1
Identities = 13/78 (16%), Positives = 31/78 (39%), Gaps = 17/78 (21%)
Query: 56 ESVIANKEAFQVRLRE----FRILREQIQMNNPISRSGETAIEYFDLMAKFTDE-LRKLQ 110
ES+ +E + RL+E +++ ++ + E A + + + E + K +
Sbjct: 85 ESIRKWREEQRKRLQELDAASKVMEQEWR---------EKAKKDLEEWNQRQSEQVEKNK 135
Query: 111 RELRS---QIKKNVEADL 125
R + +AD+
Sbjct: 136 INNRIADKAFYQQPDADI 153
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 3.4
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 9/27 (33%)
Query: 105 ELRKLQRELR-----S----QIKKNVE 122
L+KLQ L+ S IK +E
Sbjct: 21 ALKKLQASLKLYADDSAPALAIKATME 47
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha,
nuclear localisation SIGN recognition, chloride
intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus}
PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I
1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A
1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ...
Length = 510
Score = 28.4 bits (63), Expect = 4.0
Identities = 10/89 (11%), Positives = 31/89 (34%), Gaps = 2/89 (2%)
Query: 105 ELRKLQRELRSQIKKNVEADLENANNQEYVGIAILILVLMVSPIIILLVRNAVTTIQMYA 164
E + E + ++ D ++ + + + I+ + + Q+ A
Sbjct: 20 ETAAAKFERQHMDSPDLGTDDDDKAMADIGSNQGTVNWSV--EDIVKGINSNNLESQLQA 77
Query: 165 AHLAQKAHELKREKHKSDTLLVQMLPPSV 193
A+K +++ + + ++P V
Sbjct: 78 TQAARKLLSREKQPPIDNIIRAGLIPKFV 106
>3e9g_A Chromatin modification-related protein EAF3; chromatin remodeling,
chromo domain, transcription factor, transcription
regulation; 2.50A {Saccharomyces cerevisiae} PDB: 2k3x_A
3e9f_A*
Length = 130
Score = 27.4 bits (59), Expect = 4.5
Identities = 6/35 (17%), Positives = 20/35 (57%)
Query: 97 DLMAKFTDELRKLQRELRSQIKKNVEADLENANNQ 131
D + + +E +++ L ++ K+ ++ LE+ ++
Sbjct: 95 DRIRAYNEENIAMKKRLANEAKEAKKSLLEHHHHH 129
>3rt3_C NS1, NS1B, non-structural protein 1; ubiquitin-like domain,
isgylation, antiviral protein-viral P complex; 2.01A
{Influenza b virus} PDB: 1xeq_A 3sdl_A 3r66_A
Length = 109
Score = 26.2 bits (57), Expect = 8.2
Identities = 13/48 (27%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
Query: 104 DELRKLQRELRSQIKKNVEADLENA----NNQEYVGIAILILVLMVSP 147
D L +L+R+L S+IK + +++ EN ++ +G+ ++ ++L + P
Sbjct: 46 DRLHRLKRKLESRIKTHNKSEPENKRMSLEERKAIGVKMMKVLLFMDP 93
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.132 0.370
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,691,573
Number of extensions: 346455
Number of successful extensions: 726
Number of sequences better than 10.0: 1
Number of HSP's gapped: 688
Number of HSP's successfully gapped: 37
Length of query: 377
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 282
Effective length of database: 4,049,298
Effective search space: 1141902036
Effective search space used: 1141902036
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.1 bits)