RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5058
(377 letters)
>d1azsb_ d.58.29.1 (B:) Adenylyl cyclase IIC1, domain C2a {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 199
Score = 130 bits (328), Expect = 4e-37
Identities = 55/182 (30%), Positives = 84/182 (46%), Gaps = 16/182 (8%)
Query: 206 EYYEAVTVYFSDIVGFTEIA----AVSTPLEVVNFLNSIYKLFDARIE---GYDVYKVET 258
+ Y+ V V F+ I F E LE + LN I FD + V K++T
Sbjct: 2 QSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSGVEKIKT 61
Query: 259 IGDSYMVASGLPMKNGDKHVSEIATMALDLLAGSIM--------FPIPHRKNERVQIRSG 310
IG +YM A+GL +H E + + I ++R G
Sbjct: 62 IGSTYMAATGLSAIPSQEHAQEPERQYMHIGTMVEFAYALVGKLDAINKHSFNDFKLRVG 121
Query: 311 MHTGPVVAGIVGTKMPRYCLFGDTVNTASRMESTGEALKIHISAEVKEALDVIGGFRTEH 370
++ GPV+AG++G + P+Y ++G+TVN ASRM+STG KI ++ E L + G+
Sbjct: 122 INHGPVIAGVIGAQKPQYDIWGNTVNVASRMDSTGVLDKIQVTEETSLILQTL-GYTCTC 180
Query: 371 RG 372
RG
Sbjct: 181 RG 182
>d1azsa_ d.58.29.1 (A:) Adenylyl cyclase VC1, domain C1a {Dog (Canis
familiaris) [TaxId: 9615]}
Length = 190
Score = 110 bits (274), Expect = 2e-29
Identities = 42/177 (23%), Positives = 80/177 (45%), Gaps = 3/177 (1%)
Query: 201 QQVPAEYYEAVTVYFSDIVGFTEIAAVSTPLEVVNFLNSIYKLFDARIEGYDVYKVETIG 260
++ + ++ V++ F+DI GFT +A+ T E+V LN ++ FD +++ +G
Sbjct: 5 HKIYIQKHDNVSILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILG 64
Query: 261 DSYMVASGLPMKNGDKHVSEIATMALDLLAGSIMFPIPHRKNERVQIRSGMHTGPVVAGI 320
D Y SGLP D + + + + V +R G+H+G V G+
Sbjct: 65 DCYYCVSGLPEARADHAHCCVEMG---MDMIEAISLVREMTGVNVNMRVGIHSGRVHCGV 121
Query: 321 VGTKMPRYCLFGDTVNTASRMESTGEALKIHISAEVKEALDVIGGFRTEHRGSNYTK 377
+G + ++ ++ + V A+ ME+ G+A +IHI+ L+ G
Sbjct: 122 LGLRKWQFDVWSNDVTLANHMEAGGKAGRIHITKATLSYLNGDYEVEPGCGGERNAY 178
>d1fx2a_ d.58.29.1 (A:) Receptor-type monomeric adenylyl cyclase
{Trypanosome (Trypanosoma brucei), different isoform
[TaxId: 5691]}
Length = 235
Score = 108 bits (271), Expect = 2e-28
Identities = 40/201 (19%), Positives = 74/201 (36%), Gaps = 32/201 (15%)
Query: 201 QQVPAEYYEAVTVYFSDIVGFTEIAAVSTPLEVVNFLNSIYKLFDARIEGYDVYKVETIG 260
+ P E + VT+ F+DI T + A + P + + + + +++ + I Y Y+V+T+G
Sbjct: 3 NRAPKEPTDPVTLIFTDIESSTALWA-AHPDLMPDAVAAHHRMVRSLIGRYKCYEVKTVG 61
Query: 261 DSYMVASGLPMKNGDKHVSEIATMALD---------------------------LLAGSI 293
DS+M+AS P E+ L +
Sbjct: 62 DSFMIASKSPFAAVQ-LAQELQLCFLHHDWGTNALDDSYREFEEQRAEGECEYTPPTAHM 120
Query: 294 MFPIPHRKNERVQIRSGMHTGPVVAGIVGTKMPRYCLFGDTVNTASRMESTGEALKIHIS 353
+ R +++R G+HTG Y +G T N A+R ES ++ ++
Sbjct: 121 DPEVYSRLWNGLRVRVGIHTGLCDIRHDEVTKG-YDYYGRTPNMAARTESVANGGQVLMT 179
Query: 354 AEVKEAL--DVIGGFRTEHRG 372
+L + G
Sbjct: 180 HAAYMSLSAEDRKQIDVTALG 200
>d1wc1a_ d.58.29.1 (A:) Adenylate cyclase CyaC {Spirulina platensis
[TaxId: 118562]}
Length = 197
Score = 98.1 bits (243), Expect = 9e-25
Identities = 36/172 (20%), Positives = 61/172 (35%), Gaps = 13/172 (7%)
Query: 211 VTVYFSDIVGFTEIAAVSTPLEVVNFLNSIYKLFDARIEGYDVYKVETIGDSYMVASGLP 270
+T+ FSDIVGFT ++ V LN + + +GD+ M G P
Sbjct: 8 ITILFSDIVGFTRMSNALQSQGVAELLNEYLGEMTRAVFENQGTVDKFVGDAIMALYGAP 67
Query: 271 MKNGDKHVSEIATMALDLLAGSIMFPI---------PHRKNERVQIRSGMHTGPVVAGIV 321
+ A + ++ + V+ R G+H G V G+
Sbjct: 68 EEMSPSEQVRRAIATARQMLVALEKLNQGWQERGLVGRNEVPPVRFRCGIHQGMAVVGLF 127
Query: 322 G-TKMPRYCLFGDTVNTASRMESTGEALKIHISAEVKEALDVIGGFRTEHRG 372
G + + G +VN A+R++ I +SA V + + R
Sbjct: 128 GSQERSDFTAIGPSVNIAARLQEATAPNSIMVSAMVAQYV---PDEEIIKRE 176
>d1xeqa1 a.16.1.1 (A:15-103) N-terminal, RNA-binding domain of
nonstructural protein NS1 {Influenza B virus [TaxId:
11520]}
Length = 89
Score = 26.2 bits (57), Expect = 2.3
Identities = 13/48 (27%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
Query: 104 DELRKLQRELRSQIKKNVEADLENA----NNQEYVGIAILILVLMVSP 147
D L +L+R+L S+IK + +++ EN ++ +G+ ++ ++L + P
Sbjct: 32 DRLHRLKRKLESRIKTHNKSEPENKRMSLEERKAIGVKMMKVLLFMDP 79
>d1iica2 d.108.1.2 (A:219-455) N-myristoyl transferase, NMT {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 26.0 bits (57), Expect = 6.8
Identities = 14/72 (19%), Positives = 22/72 (30%), Gaps = 2/72 (2%)
Query: 207 YYEAVTVYFSDIVGFTEIAAVSTPLEVVNFLNSIYKLFDARIEGYDVYKVETIGDSYMVA 266
YY A F F A + + + A+ DV+ T D+ +
Sbjct: 133 YYYATDADFQFKDRFDPKATKALKTRLCELIYDA--CILAKNANMDVFNALTSQDNTLFL 190
Query: 267 SGLPMKNGDKHV 278
L GD +
Sbjct: 191 DDLKFGPGDGFL 202
>d1lqaa_ c.1.7.1 (A:) Tas protein {Escherichia coli [TaxId: 562]}
Length = 346
Score = 26.0 bits (56), Expect = 8.7
Identities = 7/59 (11%), Positives = 23/59 (38%), Gaps = 12/59 (20%)
Query: 305 VQIRSGMHTGPVVAGIVGTKMPRYCLFGDTVNTASRMESTGEALKIHISAEVKEALDVI 363
+ + V + ++G T ++++ E+L + +S +V ++ +
Sbjct: 291 MALAFVRRQPFVASTLLGAT------------TMDQLKTNIESLHLELSEDVLAEIEAV 337
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.132 0.370
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,331,121
Number of extensions: 60316
Number of successful extensions: 174
Number of sequences better than 10.0: 1
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 16
Length of query: 377
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 290
Effective length of database: 1,213,086
Effective search space: 351794940
Effective search space used: 351794940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.8 bits)