BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5059
(1036 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JWY|B Chain B, Crystal Structure Of The Dynamin A Gtpase Domain Complexed
With Gdp, Determined As Myosin Fusion
pdb|1JX2|B Chain B, Crystal Structure Of The Nucleotide-Free Dynamin A Gtpase
Domain, Determined As Myosin Fusion
Length = 315
Score = 218 bits (556), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 122/258 (47%), Positives = 152/258 (58%), Gaps = 57/258 (22%)
Query: 65 VINKLQDVFNTVGTDAIQLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQ 124
VINKLQDVFNT+G+D + LPQIVVVG+QSSGKSSV+E++VG+ FLPRG GIVTRRPLILQ
Sbjct: 6 VINKLQDVFNTLGSDPLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQ 65
Query: 125 LYYCPKDDREKRTAAAGTMDLDAWGQFLHTKDKVXXXXXXXXXXXXXXXXXLAGKNKGIC 184
L + P D +T
Sbjct: 66 LTHLPIADDGSQTQE--------------------------------------------- 80
Query: 185 TMDLDAWGQFLHTKDKVXXXXXXXXXXXXXXXXXLAGKNKGICSEPIILKIYSTSVLNLT 244
WG+FLH + + + GKNKGI ++PI LKIYS V+NLT
Sbjct: 81 ------WGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLT 134
Query: 245 LVDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKET 304
LVDLPGITKVPVGDQP DIE QI+++V+ YI N+II+AV ANTD+A S++L+LAKE
Sbjct: 135 LVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV 194
Query: 305 DVDGRRT------LDLLD 316
D +G+RT LDL+D
Sbjct: 195 DPEGKRTIGVITKLDLMD 212
Score = 191 bits (484), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 93/173 (53%), Positives = 133/173 (76%), Gaps = 2/173 (1%)
Query: 410 KLDVDGRRTYIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKETDVDGRRTL 469
K+ V + T IE QI+++V+ YI N+II+AV ANTD+A S++L+LAKE D +G+RT+
Sbjct: 143 KVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTI 202
Query: 470 AVVTKIDLMDAGTDAIDILCGRVIPVKLGIIGVVNRSQQDIIDNKSIKDAIKDEAAFLQR 529
V+TK+DLMD GTDA+++L GRVIP+ LG IGV+NRSQ+DII KSI++++K E + +
Sbjct: 203 GVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKN 262
Query: 530 K--YPTLASRNGTLYLAKTLNRLLMHHIRDCLPDLKTRVNVMISQFQTLLNSY 580
Y ++A+R+GT YL+KTLN+LLM HIRD LPDLK +V+ M+S Q L++Y
Sbjct: 263 HPIYKSIANRSGTAYLSKTLNKLLMFHIRDTLPDLKVKVSKMLSDVQGELSTY 315
Score = 132 bits (333), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 65/129 (50%), Positives = 92/129 (71%), Gaps = 10/129 (7%)
Query: 317 IDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKETD 376
+DLPGITKVPVGDQP DIE QI+++V+ YI N+II+AV ANTD+A S++L+LAKE D
Sbjct: 136 VDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVD 195
Query: 377 VDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKLDVDG----------RRTYIEAQIKQ 426
+G+RT+ V+TK+DLMD GTDA+++L GRVIP+ L G + I +K
Sbjct: 196 PEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKS 255
Query: 427 LVLHYISNP 435
+L++ ++P
Sbjct: 256 EILYFKNHP 264
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/75 (57%), Positives = 56/75 (74%), Gaps = 2/75 (2%)
Query: 1 GTDAIQLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCP--KDDRE 58
G+D + LPQIVVVG+QSSGKSSV+E++VG+ FLPRG GIVTRRPLILQL + P D +
Sbjct: 18 GSDPLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQ 77
Query: 59 KRTAAAVINKLQDVF 73
+ ++K D+F
Sbjct: 78 TQEWGEFLHKPNDMF 92
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 40/50 (80%)
Query: 769 YPTLASRNGTLYLAKTLNRLLMHHIRDCLPDLKTRVNVMISQFQTLLNSY 818
Y ++A+R+GT YL+KTLN+LLM HIRD LPDLK +V+ M+S Q L++Y
Sbjct: 266 YKSIANRSGTAYLSKTLNKLLMFHIRDTLPDLKVKVSKMLSDVQGELSTY 315
>pdb|3L43|A Chain A, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
pdb|3L43|B Chain B, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
pdb|3L43|C Chain C, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
pdb|3L43|D Chain D, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
Length = 319
Score = 177 bits (450), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 140/259 (54%), Gaps = 66/259 (25%)
Query: 65 VINKLQDVFNTVGTDAI-QLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLIL 123
++N+LQD F+ +G + +LPQI VVG QS+GKSSV+E+ VG+ FLPRG GIVTRRPL+L
Sbjct: 25 LVNRLQDAFSALGQSCLLELPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVL 84
Query: 124 QLYYCPKDDREKRTAAAGTMDLDAWGQFLHTKDKVXXXXXXXXXXXXXXXXXLAGKNKGI 183
QL T+ A + +FLH K K + G NKGI
Sbjct: 85 QLI----------TSKA------EYAEFLHCKGKKFTDFDEVRLEIEAETDRVTGMNKGI 128
Query: 184 CTMDLDAWGQFLHTKDKVXXXXXXXXXXXXXXXXXLAGKNKGICSEPIILKIYSTSVLNL 243
++ PI L++YS VLNL
Sbjct: 129 SSI-------------------------------------------PINLRVYSPHVLNL 145
Query: 244 TLVDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKE 303
TL+DLPGITKVPVGDQP DIE QI+++++ +I+ N +ILAV ANTD+A S++LKLAKE
Sbjct: 146 TLIDLPGITKVPVGDQPPDIEYQIREMIMQFITRENCLILAVTPANTDLANSDALKLAKE 205
Query: 304 TDVDGRRT------LDLLD 316
D G RT LDL+D
Sbjct: 206 VDPQGLRTIGVITKLDLMD 224
Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/232 (38%), Positives = 132/232 (56%), Gaps = 17/232 (7%)
Query: 352 IILAVVTANTDMATSESLKLAKETDVDGRR--TLAVVTKIDLMDAGTDAIDILCGRVIP- 408
++L ++T+ + A K K TD D R A ++ M+ G +I I P
Sbjct: 82 LVLQLITSKAEYAEFLHCKGKKFTDFDEVRLEIEAETDRVTGMNKGISSIPINLRVYSPH 141
Query: 409 ------------VKLDVDGRRTYIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLK 456
K+ V + IE QI+++++ +I+ N +ILAV ANTD+A S++LK
Sbjct: 142 VLNLTLIDLPGITKVPVGDQPPDIEYQIREMIMQFITRENCLILAVTPANTDLANSDALK 201
Query: 457 LAKETDVDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKLGIIGVVNRSQQDIIDNKSI 516
LAKE D G RT+ V+TK+DLMD GTDA D+L +++P++ G +GVVNRSQ+DI K I
Sbjct: 202 LAKEVDPQGLRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYVGVVNRSQKDIDGKKDI 261
Query: 517 KDAIKDEAAFL--QRKYPTLASRNGTLYLAKTLNRLLMHHIRDCLPDLKTRV 566
K A+ E F Y +A R GT +L K LN+ L +HIRD LP+ + ++
Sbjct: 262 KAAMLAERKFFLSHPAYRHIADRMGTPHLQKVLNQQLTNHIRDTLPNFRNKL 313
Score = 125 bits (314), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/135 (47%), Positives = 93/135 (68%), Gaps = 12/135 (8%)
Query: 312 LDLLDIDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKL 371
L+L IDLPGITKVPVGDQP DIE QI+++++ +I+ N +ILAV ANTD+A S++LKL
Sbjct: 143 LNLTLIDLPGITKVPVGDQPPDIEYQIREMIMQFITRENCLILAVTPANTDLANSDALKL 202
Query: 372 AKETDVDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKL-----------DVDGRRTYI 420
AKE D G RT+ V+TK+DLMD GTDA D+L +++P++ D+DG++
Sbjct: 203 AKEVDPQGLRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYVGVVNRSQKDIDGKKDIK 262
Query: 421 EAQIKQLVLHYISNP 435
A + + ++S+P
Sbjct: 263 AAMLAERKF-FLSHP 276
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/45 (73%), Positives = 40/45 (88%)
Query: 5 IQLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQL 49
++LPQI VVG QS+GKSSV+E+ VG+ FLPRG GIVTRRPL+LQL
Sbjct: 42 LELPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQL 86
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%)
Query: 753 ESEWVAQRRKEASDTKYPTLASRNGTLYLAKTLNRLLMHHIRDCLPDLKTRV 804
++ +A+R+ S Y +A R GT +L K LN+ L +HIRD LP+ + ++
Sbjct: 262 KAAMLAERKFFLSHPAYRHIADRMGTPHLQKVLNQQLTNHIRDTLPNFRNKL 313
>pdb|3ZVR|A Chain A, Crystal Structure Of Dynamin
Length = 772
Score = 177 bits (448), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 138/259 (53%), Gaps = 66/259 (25%)
Query: 65 VINKLQDVFNTVGTDA-IQLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLIL 123
++N+LQD F+ +G +A + LPQI VVG QS+GKSSV+E+ VG+ FLPRG GIVTRRPL+L
Sbjct: 32 LVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVL 91
Query: 124 QLYYCPKDDREKRTAAAGTMDLDAWGQFLHTKDKVXXXXXXXXXXXXXXXXXLAGKNKGI 183
QL + + +FLH K K + G NKGI
Sbjct: 92 QLVNSTTE----------------YAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGI 135
Query: 184 CTMDLDAWGQFLHTKDKVXXXXXXXXXXXXXXXXXLAGKNKGICSEPIILKIYSTSVLNL 243
+ PI L++YS VLNL
Sbjct: 136 SPV-------------------------------------------PINLRVYSPHVLNL 152
Query: 244 TLVDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKE 303
TLVDLPG+TKVPVGDQP DIE QI+ +++ +++ N +ILAV AN+D+A S++LK+AKE
Sbjct: 153 TLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKE 212
Query: 304 TDVDGRRT------LDLLD 316
D G+RT LDL+D
Sbjct: 213 VDPQGQRTIGVITKLDLMD 231
Score = 157 bits (396), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 126/197 (63%), Gaps = 6/197 (3%)
Query: 420 IEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKETDVDGRRTLAVVTKIDLMD 479
IE QI+ +++ +++ N +ILAV AN+D+A S++LK+AKE D G+RT+ V+TK+DLMD
Sbjct: 172 IEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMD 231
Query: 480 AGTDAIDILCGRVIPVKLGIIGVVNRSQQDIIDNKSIKDAIKDEAAFL--QRKYPTLASR 537
GTDA D+L +++P++ G IGVVNRSQ+DI K I A+ E F Y LA R
Sbjct: 232 EGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADR 291
Query: 538 NGTLYLAKTLNRLLMHHIRDCLPDLKTRVNVMISQFQTLLNSYG----EDVSDKSQTLLQ 593
GT YL K LN+ L +HIRD LP L+ ++ + + ++ Y +D + K++ LLQ
Sbjct: 292 MGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVDEYKNFRPDDPARKTKALLQ 351
Query: 594 IITKFASAYCSTVEENG 610
++ +FA + +E +G
Sbjct: 352 MVQQFAVDFEKRIEGSG 368
Score = 125 bits (315), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 110/190 (57%), Gaps = 4/190 (2%)
Query: 757 VAQRRKEASDTKYPTLASRNGTLYLAKTLNRLLMHHIRDCLPDLKTRVNVMISQFQTLLN 816
A+R+ S Y LA R GT YL K LN+ L +HIRD LP L+ ++ + + ++
Sbjct: 273 AAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVD 332
Query: 817 SYG----EDVSDKSQTLLQIITKFASAYCSTVEGTARNIETTELCGGARICYIFHEIFGK 872
Y +D + K++ LLQ++ +FA + +EG+ I+T EL GGARI IFHE F
Sbjct: 333 EYKNFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQIDTYELSGGARINRIFHERFPF 392
Query: 873 VLDGINPLDGLTKMDILTAIRNATGPRPALFVPEVSFELLVKRQIRRLEEPSQRCVELVH 932
L + + + +I AI+N R LF P+++FE VK+Q+++L+EPS +CV++V
Sbjct: 393 ELVKMEFDEKELRREISYAIKNIHDIRTGLFTPDLAFEATVKKQVQKLKEPSIKCVDMVV 452
Query: 933 EEMQRIIQHC 942
E+ I+ C
Sbjct: 453 SELTSTIRKC 462
Score = 122 bits (305), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/141 (43%), Positives = 96/141 (68%), Gaps = 12/141 (8%)
Query: 312 LDLLDIDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKL 371
L+L +DLPG+TKVPVGDQP DIE QI+ +++ +++ N +ILAV AN+D+A S++LK+
Sbjct: 150 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 209
Query: 372 AKETDVDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKL-----------DVDGRRTYI 420
AKE D G+RT+ V+TK+DLMD GTDA D+L +++P++ D+DG++ I
Sbjct: 210 AKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKD-I 268
Query: 421 EAQIKQLVLHYISNPNSIILA 441
A + ++S+P+ LA
Sbjct: 269 TAALAAERKFFLSHPSYRHLA 289
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/45 (73%), Positives = 39/45 (86%)
Query: 5 IQLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQL 49
+ LPQI VVG QS+GKSSV+E+ VG+ FLPRG GIVTRRPL+LQL
Sbjct: 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQL 93
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 44/72 (61%)
Query: 692 KRDCDVIERLIKSYFYIIRKSIQDTVPKAIMHFLVNYVKDNLQSELVTHLYKADSASELL 751
+R + I L+ SY I+ K+++D +PK IMH ++N K+ + SEL+ +LY + L+
Sbjct: 676 ERQVETIRNLVDSYMAIVNKTVRDLMPKTIMHLMINNTKEFIFSELLANLYSCGDQNTLM 735
Query: 752 NESEWVAQRRKE 763
ES AQRR E
Sbjct: 736 EESAEQAQRRDE 747
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 44/72 (61%)
Query: 962 KRDCDVIERLIKSYFYIIRKSIQDTVPKAIMHFLVNYVKDNLQSELVTHLYKADSASELL 1021
+R + I L+ SY I+ K+++D +PK IMH ++N K+ + SEL+ +LY + L+
Sbjct: 676 ERQVETIRNLVDSYMAIVNKTVRDLMPKTIMHLMINNTKEFIFSELLANLYSCGDQNTLM 735
Query: 1022 NESEWVAQRRKE 1033
ES AQRR E
Sbjct: 736 EESAEQAQRRDE 747
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%)
Query: 621 PALHERIVEVVTQLLRRRLPATNTMVENLLAIELAYINTKHPDF 664
P L E + +VT +R R T V L+ IELAY+NT H DF
Sbjct: 470 PRLREEMERIVTTHIREREGRTKEQVMLLIDIELAYMNTNHEDF 513
>pdb|3SNH|A Chain A, Crystal Structure Of Nucleotide-Free Human Dynamin1
Length = 743
Score = 177 bits (448), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 138/259 (53%), Gaps = 66/259 (25%)
Query: 65 VINKLQDVFNTVGTDA-IQLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLIL 123
++N+LQD F+ +G +A + LPQI VVG QS+GKSSV+E+ VG+ FLPRG GIVTRRPL+L
Sbjct: 9 LVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVL 68
Query: 124 QLYYCPKDDREKRTAAAGTMDLDAWGQFLHTKDKVXXXXXXXXXXXXXXXXXLAGKNKGI 183
QL + + +FLH K K + G NKGI
Sbjct: 69 QLVNATTE----------------YAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGI 112
Query: 184 CTMDLDAWGQFLHTKDKVXXXXXXXXXXXXXXXXXLAGKNKGICSEPIILKIYSTSVLNL 243
+ PI L++YS VLNL
Sbjct: 113 SPV-------------------------------------------PINLRVYSPHVLNL 129
Query: 244 TLVDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKE 303
TLVDLPG+TKVPVGDQP DIE QI+ +++ +++ N +ILAV AN+D+A S++LK+AKE
Sbjct: 130 TLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKE 189
Query: 304 TDVDGRRT------LDLLD 316
D G+RT LDL+D
Sbjct: 190 VDPQGQRTIGVITKLDLMD 208
Score = 156 bits (394), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 125/197 (63%), Gaps = 6/197 (3%)
Query: 420 IEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKETDVDGRRTLAVVTKIDLMD 479
IE QI+ +++ +++ N +ILAV AN+D+A S++LK+AKE D G+RT+ V+TK+DLMD
Sbjct: 149 IEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMD 208
Query: 480 AGTDAIDILCGRVIPVKLGIIGVVNRSQQDIIDNKSIKDAIKDEAAFL--QRKYPTLASR 537
GTDA D+L +++P++ G IGVVNRSQ+DI K I A+ E F Y LA R
Sbjct: 209 EGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADR 268
Query: 538 NGTLYLAKTLNRLLMHHIRDCLPDLKTRVNVMISQFQTLLNSYG----EDVSDKSQTLLQ 593
GT YL K LN+ L +HIRD LP L+ ++ + + + Y +D + K++ LLQ
Sbjct: 269 MGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVEEYKNFRPDDPARKTKALLQ 328
Query: 594 IITKFASAYCSTVEENG 610
++ +FA + +E +G
Sbjct: 329 MVQQFAVDFEKRIEGSG 345
Score = 122 bits (306), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 110/193 (56%), Gaps = 4/193 (2%)
Query: 757 VAQRRKEASDTKYPTLASRNGTLYLAKTLNRLLMHHIRDCLPDLKTRVNVMISQFQTLLN 816
A+R+ S Y LA R GT YL K LN+ L +HIRD LP L+ ++ + + +
Sbjct: 250 AAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVE 309
Query: 817 SYG----EDVSDKSQTLLQIITKFASAYCSTVEGTARNIETTELCGGARICYIFHEIFGK 872
Y +D + K++ LLQ++ +FA + +EG+ I+T EL GGARI IFHE F
Sbjct: 310 EYKNFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQIDTYELSGGARINRIFHERFPF 369
Query: 873 VLDGINPLDGLTKMDILTAIRNATGPRPALFVPEVSFELLVKRQIRRLEEPSQRCVELVH 932
L + + + +I AI+NA LF P+++FE +VK+Q++++ EP +CV++V
Sbjct: 370 ELVKMEFDEKELRREISYAIKNAAAAATGLFTPDMAFETIVKKQVKKIREPCLKCVDMVI 429
Query: 933 EEMQRIIQHCEKE 945
E+ ++ C K+
Sbjct: 430 SELISTVRQCTKK 442
Score = 121 bits (304), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/141 (43%), Positives = 96/141 (68%), Gaps = 12/141 (8%)
Query: 312 LDLLDIDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKL 371
L+L +DLPG+TKVPVGDQP DIE QI+ +++ +++ N +ILAV AN+D+A S++LK+
Sbjct: 127 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKV 186
Query: 372 AKETDVDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKL-----------DVDGRRTYI 420
AKE D G+RT+ V+TK+DLMD GTDA D+L +++P++ D+DG++ I
Sbjct: 187 AKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKD-I 245
Query: 421 EAQIKQLVLHYISNPNSIILA 441
A + ++S+P+ LA
Sbjct: 246 TAALAAERKFFLSHPSYRHLA 266
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/45 (73%), Positives = 39/45 (86%)
Query: 5 IQLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQL 49
+ LPQI VVG QS+GKSSV+E+ VG+ FLPRG GIVTRRPL+LQL
Sbjct: 26 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQL 70
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 44/72 (61%)
Query: 692 KRDCDVIERLIKSYFYIIRKSIQDTVPKAIMHFLVNYVKDNLQSELVTHLYKADSASELL 751
+R + I L+ SY I+ K+++D +PK IMH ++N K+ + SEL+ +LY + L+
Sbjct: 653 ERQVETIRNLVDSYMAIVNKTVRDLMPKTIMHLMINNTKEFIFSELLANLYSCGDQNTLM 712
Query: 752 NESEWVAQRRKE 763
ES AQRR E
Sbjct: 713 EESAEQAQRRDE 724
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 44/72 (61%)
Query: 962 KRDCDVIERLIKSYFYIIRKSIQDTVPKAIMHFLVNYVKDNLQSELVTHLYKADSASELL 1021
+R + I L+ SY I+ K+++D +PK IMH ++N K+ + SEL+ +LY + L+
Sbjct: 653 ERQVETIRNLVDSYMAIVNKTVRDLMPKTIMHLMINNTKEFIFSELLANLYSCGDQNTLM 712
Query: 1022 NESEWVAQRRKE 1033
ES AQRR E
Sbjct: 713 EESAEQAQRRDE 724
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%)
Query: 621 PALHERIVEVVTQLLRRRLPATNTMVENLLAIELAYINTKHPDF 664
P L E + +VT +R R T V L+ IELAY+NT H DF
Sbjct: 447 PRLREEMERIVTTHIREREGRTKEQVMLLIDIELAYMNTNHEDF 490
>pdb|3ZYC|A Chain A, Dynamin 1 Gtpase Ged Fusion Dimer Complexed With Gmppcp
pdb|3ZYC|D Chain D, Dynamin 1 Gtpase Ged Fusion Dimer Complexed With Gmppcp
pdb|3ZYS|A Chain A, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
pdb|3ZYS|D Chain D, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
Length = 353
Score = 174 bits (442), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 138/259 (53%), Gaps = 66/259 (25%)
Query: 65 VINKLQDVFNTVGTDA-IQLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLIL 123
++N+LQD F+ +G +A + LPQI VVG QS+GKSSV+E+ VG+ FLPRG GIVTRRPL+L
Sbjct: 12 LVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVL 71
Query: 124 QLYYCPKDDREKRTAAAGTMDLDAWGQFLHTKDKVXXXXXXXXXXXXXXXXXLAGKNKGI 183
QL + + +FLH K K + G NKGI
Sbjct: 72 QLVNATTE----------------YAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGI 115
Query: 184 CTMDLDAWGQFLHTKDKVXXXXXXXXXXXXXXXXXLAGKNKGICSEPIILKIYSTSVLNL 243
+ PI L++YS VLNL
Sbjct: 116 SPV-------------------------------------------PINLRVYSPHVLNL 132
Query: 244 TLVDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKE 303
TLVDLPG+TKVPVGDQP DIE QI+ +++ +++ N +ILAV AN+D+A S++LK+AKE
Sbjct: 133 TLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKE 192
Query: 304 TDVDGRRT------LDLLD 316
D G+RT LDL+D
Sbjct: 193 VDPQGQRTIGVITKLDLMD 211
Score = 144 bits (363), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 109/173 (63%), Gaps = 2/173 (1%)
Query: 420 IEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKETDVDGRRTLAVVTKIDLMD 479
IE QI+ +++ +++ N +ILAV AN+D+A S++LK+AKE D G+RT+ V+TK+DLMD
Sbjct: 152 IEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMD 211
Query: 480 AGTDAIDILCGRVIPVKLGIIGVVNRSQQDIIDNKSIKDAIKDEAAFL--QRKYPTLASR 537
GTDA D+L +++P++ G IGVVNRSQ+DI K I A+ E F Y LA R
Sbjct: 212 EGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADR 271
Query: 538 NGTLYLAKTLNRLLMHHIRDCLPDLKTRVNVMISQFQTLLNSYGEDVSDKSQT 590
GT YL K LN+ L +HIRD LP L+ ++ + + + Y DK T
Sbjct: 272 MGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVEEYKNFRPDKHGT 324
Score = 119 bits (299), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 57/109 (52%), Positives = 82/109 (75%), Gaps = 6/109 (5%)
Query: 312 LDLLDIDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKL 371
L+L +DLPG+TKVPVGDQP DIE QI+ +++ +++ N +ILAV AN+D+A S++LK+
Sbjct: 130 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKV 189
Query: 372 AKETDVDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKLDVDGRRTYI 420
AKE D G+RT+ V+TK+DLMD GTDA D+L +++P+ RR YI
Sbjct: 190 AKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPL------RRGYI 232
Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 33/45 (73%), Positives = 39/45 (86%)
Query: 5 IQLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQL 49
+ LPQI VVG QS+GKSSV+E+ VG+ FLPRG GIVTRRPL+LQL
Sbjct: 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQL 73
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%)
Query: 754 SEWVAQRRKEASDTKYPTLASRNGTLYLAKTLNRLLMHHIRDCLPDLKTRVNVMISQFQT 813
+ A+R+ S Y LA R GT YL K LN+ L +HIRD LP L+ ++ + +
Sbjct: 250 AALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEK 309
Query: 814 LLNSYGEDVSDKSQT 828
+ Y DK T
Sbjct: 310 EVEEYKNFRPDKHGT 324
>pdb|2AKA|B Chain B, Structure Of The Nucleotide-Free Myosin Ii Motor Domain
From Dictyostelium Discoideum Fused To The Gtpase Domain
Of Dynamin 1 From Rattus Norvegicus
Length = 299
Score = 174 bits (441), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 138/259 (53%), Gaps = 66/259 (25%)
Query: 65 VINKLQDVFNTVGTDA-IQLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLIL 123
++N+LQD F+ +G +A + LPQI VVG QS+GKSSV+E+ VG+ FLPRG GIVTRRPL+L
Sbjct: 7 LVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVL 66
Query: 124 QLYYCPKDDREKRTAAAGTMDLDAWGQFLHTKDKVXXXXXXXXXXXXXXXXXLAGKNKGI 183
QL + + +FLH K K + G NKGI
Sbjct: 67 QLVNSTTE----------------YAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGI 110
Query: 184 CTMDLDAWGQFLHTKDKVXXXXXXXXXXXXXXXXXLAGKNKGICSEPIILKIYSTSVLNL 243
+ PI L++YS VLNL
Sbjct: 111 SPV-------------------------------------------PINLRVYSPHVLNL 127
Query: 244 TLVDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKE 303
TLVDLPG+TKVPVGDQP DIE QI+ +++ +++ N +ILAV AN+D+A S++LK+AKE
Sbjct: 128 TLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKE 187
Query: 304 TDVDGRRT------LDLLD 316
D G+RT LDL+D
Sbjct: 188 VDPQGQRTIGVITKLDLMD 206
Score = 142 bits (358), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 72/149 (48%), Positives = 102/149 (68%), Gaps = 2/149 (1%)
Query: 420 IEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKETDVDGRRTLAVVTKIDLMD 479
IE QI+ +++ +++ N +ILAV AN+D+A S++LK+AKE D G+RT+ V+TK+DLMD
Sbjct: 147 IEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMD 206
Query: 480 AGTDAIDILCGRVIPVKLGIIGVVNRSQQDIIDNKSIKDAIKDEAAFL--QRKYPTLASR 537
GTDA D+L +++P++ G IGVVNRSQ+DI K I A+ E F Y LA R
Sbjct: 207 EGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADR 266
Query: 538 NGTLYLAKTLNRLLMHHIRDCLPDLKTRV 566
GT YL K LN+ L +HIRD LP L+ ++
Sbjct: 267 MGTPYLQKVLNQQLTNHIRDTLPGLRNKL 295
Score = 119 bits (299), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 57/109 (52%), Positives = 82/109 (75%), Gaps = 6/109 (5%)
Query: 312 LDLLDIDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKL 371
L+L +DLPG+TKVPVGDQP DIE QI+ +++ +++ N +ILAV AN+D+A S++LK+
Sbjct: 125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 184
Query: 372 AKETDVDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKLDVDGRRTYI 420
AKE D G+RT+ V+TK+DLMD GTDA D+L +++P+ RR YI
Sbjct: 185 AKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPL------RRGYI 227
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 33/45 (73%), Positives = 39/45 (86%)
Query: 5 IQLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQL 49
+ LPQI VVG QS+GKSSV+E+ VG+ FLPRG GIVTRRPL+LQL
Sbjct: 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQL 68
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 754 SEWVAQRRKEASDTKYPTLASRNGTLYLAKTLNRLLMHHIRDCLPDLKTRV 804
+ A+R+ S Y LA R GT YL K LN+ L +HIRD LP L+ ++
Sbjct: 245 AALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKL 295
>pdb|2X2E|A Chain A, Dynamin Gtpase Dimer, Long Axis Form
pdb|2X2E|D Chain D, Dynamin Gtpase Dimer, Long Axis Form
pdb|2X2F|A Chain A, Dynamin 1 Gtpase Dimer, Short Axis Form
pdb|2X2F|D Chain D, Dynamin 1 Gtpase Dimer, Short Axis Form
Length = 353
Score = 170 bits (430), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 104/270 (38%), Positives = 140/270 (51%), Gaps = 67/270 (24%)
Query: 65 VINKLQDVFNTVGTDA-IQLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLIL 123
++N+LQD F+ +G +A + LPQI VVG QS+GKSSV+E+ VG+ FLPRG GIVTRRPL+L
Sbjct: 12 LVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVL 71
Query: 124 QLYYCPKDDREKRTAAAGTMDLDAWGQFLHTKDKVXXXXXXXXXXXXXXXXXLAGKNKGI 183
QL + + +FLH K K + G NKGI
Sbjct: 72 QLVNATTE----------------YAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGI 115
Query: 184 CTMDLDAWGQFLHTKDKVXXXXXXXXXXXXXXXXXLAGKNKGICSEPIILKIYSTSVLNL 243
+ PI L++YS VLNL
Sbjct: 116 SPV-------------------------------------------PINLRVYSPHVLNL 132
Query: 244 TLVDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKE 303
TLVDLPG TKVPVGDQP DIE QI+ + +++ N +ILAV AN+D+A S++LK+AKE
Sbjct: 133 TLVDLPGXTKVPVGDQPPDIEFQIRDXLXQFVTKENCLILAVSPANSDLANSDALKVAKE 192
Query: 304 TDVDGRRTLDLLDIDLPGITKVPVGDQPDD 333
D G+RT+ + ITK+ + D+ D
Sbjct: 193 VDPQGQRTIGV-------ITKLDLXDEGTD 215
Score = 139 bits (351), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 106/173 (61%), Gaps = 2/173 (1%)
Query: 420 IEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKETDVDGRRTLAVVTKIDLMD 479
IE QI+ + +++ N +ILAV AN+D+A S++LK+AKE D G+RT+ V+TK+DL D
Sbjct: 152 IEFQIRDXLXQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLXD 211
Query: 480 AGTDAIDILCGRVIPVKLGIIGVVNRSQQDIIDNKSIKDAIKDEAAFL--QRKYPTLASR 537
GTDA D+L +++P++ G IGVVNRSQ+DI K I A+ E F Y LA R
Sbjct: 212 EGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADR 271
Query: 538 NGTLYLAKTLNRLLMHHIRDCLPDLKTRVNVMISQFQTLLNSYGEDVSDKSQT 590
GT YL K LN+ L +HIRD LP L+ ++ + + + Y DK T
Sbjct: 272 XGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVEEYKNFRPDKHGT 324
Score = 113 bits (283), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 78/109 (71%), Gaps = 6/109 (5%)
Query: 312 LDLLDIDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKL 371
L+L +DLPG TKVPVGDQP DIE QI+ + +++ N +ILAV AN+D+A S++LK+
Sbjct: 130 LNLTLVDLPGXTKVPVGDQPPDIEFQIRDXLXQFVTKENCLILAVSPANSDLANSDALKV 189
Query: 372 AKETDVDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKLDVDGRRTYI 420
AKE D G+RT+ V+TK+DL D GTDA D+L +++P+ RR YI
Sbjct: 190 AKEVDPQGQRTIGVITKLDLXDEGTDARDVLENKLLPL------RRGYI 232
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 33/45 (73%), Positives = 39/45 (86%)
Query: 5 IQLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQL 49
+ LPQI VVG QS+GKSSV+E+ VG+ FLPRG GIVTRRPL+LQL
Sbjct: 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQL 73
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%)
Query: 754 SEWVAQRRKEASDTKYPTLASRNGTLYLAKTLNRLLMHHIRDCLPDLKTRVNVMISQFQT 813
+ A+R+ S Y LA R GT YL K LN+ L +HIRD LP L+ ++ + +
Sbjct: 250 AALAAERKFFLSHPSYRHLADRXGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEK 309
Query: 814 LLNSYGEDVSDKSQT 828
+ Y DK T
Sbjct: 310 EVEEYKNFRPDKHGT 324
>pdb|3T34|A Chain A, Arabidopsis Thaliana Dynamin-Related Protein 1a (Atdrp1a)
In Prefission State
pdb|3T34|B Chain B, Arabidopsis Thaliana Dynamin-Related Protein 1a (Atdrp1a)
In Prefission State
pdb|3T35|A Chain A, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|B Chain B, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|C Chain C, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|D Chain D, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
Length = 360
Score = 141 bits (355), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/266 (36%), Positives = 128/266 (48%), Gaps = 66/266 (24%)
Query: 64 AVINKLQDVFNTVG----TDAI-----QLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIG 114
+++NK+Q +G + A+ LP I VVG QSSGKSSV+ES+VGK FLPRG G
Sbjct: 6 SLVNKIQRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG 65
Query: 115 IVTRRPLILQLYYCPKDDREKRTAAAGTMDLDAWGQFLHTKDKVXXXXXXXXXXXXXXXX 174
IVTRRPL+LQL RE + +FLH K
Sbjct: 66 IVTRRPLVLQLQKIDDGTRE-------------YAEFLHLPRKKFTDFAAVRKEIQDETD 112
Query: 175 XLAGKNKGICTMDLDAWGQFLHTKDKVXXXXXXXXXXXXXXXXXLAGKNKGICSEPIILK 234
G++K I ++ PI L
Sbjct: 113 RETGRSKAISSV-------------------------------------------PIHLS 129
Query: 235 IYSTSVLNLTLVDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMAT 294
IYS +V+NLTL+DLPG+TKV V Q D I I+ +V YI PN IILA+ AN D+AT
Sbjct: 130 IYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT 189
Query: 295 SESLKLAKETDVDGRRTLDLL-DIDL 319
S+++K+++E D G RT +L IDL
Sbjct: 190 SDAIKISREVDPSGDRTFGVLTKIDL 215
Score = 129 bits (323), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/178 (40%), Positives = 111/178 (62%), Gaps = 2/178 (1%)
Query: 410 KLDVDGRRTYIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKETDVDGRRTL 469
K+ VDG+ I I+ +V YI PN IILA+ AN D+ATS+++K+++E D G RT
Sbjct: 148 KVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTF 207
Query: 470 AVVTKIDLMDAGTDAIDILCGRVIPVKLGIIGVVNRSQQDIIDNKSIKDAIKDEAAFLQR 529
V+TKIDLMD GTDA++IL GR +K +GVVNRSQ DI N + A K E +
Sbjct: 208 GVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAARKREREYFSN 267
Query: 530 --KYPTLASRNGTLYLAKTLNRLLMHHIRDCLPDLKTRVNVMISQFQTLLNSYGEDVS 585
+Y LA++ G+ +LAK L++ L I+ +P +++ +N + + +T L+ G+ ++
Sbjct: 268 TTEYRHLANKMGSEHLAKMLSKHLERVIKSRIPGIQSLINKTVLELETELSRLGKPIA 325
Score = 102 bits (255), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 52/99 (52%), Positives = 69/99 (69%)
Query: 312 LDLLDIDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKL 371
++L IDLPG+TKV V Q D I I+ +V YI PN IILA+ AN D+ATS+++K+
Sbjct: 136 VNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKI 195
Query: 372 AKETDVDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVK 410
++E D G RT V+TKIDLMD GTDA++IL GR +K
Sbjct: 196 SREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLK 234
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/52 (71%), Positives = 40/52 (76%)
Query: 7 LPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDRE 58
LP I VVG QSSGKSSV+ES+VGK FLPRG GIVTRRPL+LQL RE
Sbjct: 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTRE 85
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 45/73 (61%), Gaps = 4/73 (5%)
Query: 755 EWVAQRRKE----ASDTKYPTLASRNGTLYLAKTLNRLLMHHIRDCLPDLKTRVNVMISQ 810
+ +A R++E ++ T+Y LA++ G+ +LAK L++ L I+ +P +++ +N + +
Sbjct: 253 DMIAARKREREYFSNTTEYRHLANKMGSEHLAKMLSKHLERVIKSRIPGIQSLINKTVLE 312
Query: 811 FQTLLNSYGEDVS 823
+T L+ G+ ++
Sbjct: 313 LETELSRLGKPIA 325
>pdb|3SZR|A Chain A, Crystal Structure Of Modified Nucleotide-Free Human Mxa
Length = 608
Score = 93.6 bits (231), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 67/97 (69%)
Query: 219 LAGKNKGICSEPIILKIYSTSVLNLTLVDLPGITKVPVGDQPDDIEAQIKQLVLHYISNP 278
+AG+ GI E I L+I S V +LTL+DLPGIT+V VG+QP DI +IK L+ YI
Sbjct: 125 IAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQ 184
Query: 279 NSIILAVVTANTDMATSESLKLAKETDVDGRRTLDLL 315
+I L VV +N D+AT+E+L +A+E D +G RT+ +L
Sbjct: 185 ETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGIL 221
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 71/108 (65%), Gaps = 2/108 (1%)
Query: 305 DVDGRRTLDLLDIDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMA 364
++ R DL IDLPGIT+V VG+QP DI +IK L+ YI +I L VV +N D+A
Sbjct: 140 EISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA 199
Query: 365 TSESLKLAKETDVDGRRTLAVVTKIDLMDAGTD--AIDILCGRVIPVK 410
T+E+L +A+E D +G RT+ ++TK DL+D GT+ +D++ V +K
Sbjct: 200 TTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDVVRNLVFHLK 247
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 100/186 (53%), Gaps = 9/186 (4%)
Query: 420 IEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKETDVDGRRTLAVVTKIDLMD 479
I +IK L+ YI +I L VV +N D+AT+E+L +A+E D +G RT+ ++TK DL+D
Sbjct: 169 IGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVD 228
Query: 480 AGTD--AIDILCGRVIPVKLGIIGVVNRSQQDIIDNKSIKDAIKDEAAFLQRKYPTL--- 534
GT+ +D++ V +K G + V R QQ+I D S+ +A++ E F + +P
Sbjct: 229 KGTEDKVVDVVRNLVFHLKKGYMIVKCRGQQEIQDQLSLSEALQREKIFFE-NHPYFRDL 287
Query: 535 --ASRNGTLYLAKTLNRLLMHHIRDCLPDLKTRVNVMISQFQTLLNSYGEDV-SDKSQTL 591
+ LA+ L L+ HI LP L+ ++ + L YG D+ D+++ +
Sbjct: 288 LEEGKATVPCLAEKLTSELITHICKSLPLLENQIKETHQRITEELQKYGVDIPEDENEKM 347
Query: 592 LQIITK 597
+I K
Sbjct: 348 FFLIDK 353
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 44/66 (66%), Gaps = 2/66 (3%)
Query: 69 LQDVFNTVGTDA-IQLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYY 127
L D +G + + LP I V+G QSSGKSSV+E+L G + LPRG GIVTR PL+L+L
Sbjct: 30 LIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKK 88
Query: 128 CPKDDR 133
+D+
Sbjct: 89 LVNEDK 94
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/53 (56%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
Query: 5 IQLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDR 57
+ LP I V+G QSSGKSSV+E+L G + LPRG GIVTR PL+L+L +D+
Sbjct: 43 LALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKKLVNEDK 94
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/294 (21%), Positives = 120/294 (40%), Gaps = 46/294 (15%)
Query: 781 LAKTLNRLLMHHIRDCLPDLKTRVNVMISQFQTLLNSYGEDV-SDKSQTLLQIITKFASA 839
LA+ L L+ HI LP L+ ++ + L YG D+ D+++ + +I K +A
Sbjct: 298 LAEKLTSELITHICKSLPLLENQIKETHQRITEELQKYGVDIPEDENEKMFFLIDK-VNA 356
Query: 840 YCSTVEGTARNIETT---ELCGGARICYIFHEIFGKVLDGINPLDGLTKMDILTAIRNAT 896
+ + + ET ++ R+ + FH+ + + + I A
Sbjct: 357 FNQDITALMQGEETVGEEDIRLFTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFENQAA 416
Query: 897 GPRPALFVPEVSFELLVKRQIRRLEEPSQRCVELVH--EEMQRI------IQHCEKEGNI 948
FV +FE +VK+QI+ LEEP+ V+++H +M R+ I++ E+ N+
Sbjct: 417 AAELPGFVNYRTFETIVKQQIKALEEPA---VDMLHTVTDMVRLAFTDVSIKNFEEFFNL 473
Query: 949 PATTSSRT--LSEKEKRDCDVIERL----------------------------IKSYFYI 978
T S+ + +++R+ + + RL + +Y
Sbjct: 474 HRTAKSKIEDIRAEQEREGEKLIRLHFQMEQIVYGAFQSSSATDSSMEEIFQHLMAYHQE 533
Query: 979 IRKSIQDTVPKAIMHFLVNYVKDNLQSELVTHLYKADSASELLNESEWVAQRRK 1032
K I +P I F++ LQ ++ L D+ S LL E + +RK
Sbjct: 534 ASKRISSHIPLIIQFFMLQTYGQQLQKAMLQLLQDKDTYSWLLKERSDTSDKRK 587
>pdb|3ZYS|B Chain B, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
pdb|3ZYS|E Chain E, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
Length = 662
Score = 93.6 bits (231), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 67/97 (69%)
Query: 219 LAGKNKGICSEPIILKIYSTSVLNLTLVDLPGITKVPVGDQPDDIEAQIKQLVLHYISNP 278
+AG+ GI E I L+I S V +LTL+DLPGIT+V VG+QP DI +IK L+ YI
Sbjct: 150 IAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQ 209
Query: 279 NSIILAVVTANTDMATSESLKLAKETDVDGRRTLDLL 315
+I L VV +N D+AT+E+L +A+E D +G RT+ +L
Sbjct: 210 ETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGIL 246
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 71/108 (65%), Gaps = 2/108 (1%)
Query: 305 DVDGRRTLDLLDIDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMA 364
++ R DL IDLPGIT+V VG+QP DI +IK L+ YI +I L VV +N D+A
Sbjct: 165 EISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA 224
Query: 365 TSESLKLAKETDVDGRRTLAVVTKIDLMDAGTD--AIDILCGRVIPVK 410
T+E+L +A+E D +G RT+ ++TK DL+D GT+ +D++ V +K
Sbjct: 225 TTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDVVRNLVFHLK 272
Score = 87.0 bits (214), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 100/186 (53%), Gaps = 9/186 (4%)
Query: 420 IEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKETDVDGRRTLAVVTKIDLMD 479
I +IK L+ YI +I L VV +N D+AT+E+L +A+E D +G RT+ ++TK DL+D
Sbjct: 194 IGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVD 253
Query: 480 AGTD--AIDILCGRVIPVKLGIIGVVNRSQQDIIDNKSIKDAIKDEAAFLQRKYPTL--- 534
GT+ +D++ V +K G + V R QQ+I D S+ +A++ E F + +P
Sbjct: 254 KGTEDKVVDVVRNLVFHLKKGYMIVKCRGQQEIQDQLSLSEALQREKIFFE-NHPYFRDL 312
Query: 535 --ASRNGTLYLAKTLNRLLMHHIRDCLPDLKTRVNVMISQFQTLLNSYGEDV-SDKSQTL 591
+ LA+ L L+ HI LP L+ ++ + L YG D+ D+++ +
Sbjct: 313 LEEGKATVPCLAEKLTSELITHICKSLPLLENQIKETHQRITEELQKYGVDIPEDENEKM 372
Query: 592 LQIITK 597
+I K
Sbjct: 373 FFLIDK 378
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 44/66 (66%), Gaps = 2/66 (3%)
Query: 69 LQDVFNTVGTDA-IQLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYY 127
L D +G + + LP I V+G QSSGKSSV+E+L G + LPRG GIVTR PL+L+L
Sbjct: 55 LIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKK 113
Query: 128 CPKDDR 133
+D+
Sbjct: 114 LVNEDK 119
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/53 (56%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
Query: 5 IQLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDR 57
+ LP I V+G QSSGKSSV+E+L G + LPRG GIVTR PL+L+L +D+
Sbjct: 68 LALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKKLVNEDK 119
Score = 37.4 bits (85), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 97/213 (45%), Gaps = 23/213 (10%)
Query: 781 LAKTLNRLLMHHIRDCLPDLKTRVNVMISQFQTLLNSYGEDV-SDKSQTLLQIITKFASA 839
LA+ L L+ HI LP L+ ++ + L YG D+ D+++ + +I K +A
Sbjct: 323 LAEKLTSELITHICKSLPLLENQIKETHQRITEELQKYGVDIPEDENEKMFFLIDK-VNA 381
Query: 840 YCSTVEGTARNIETT---ELCGGARICYIFHEIFGKVLDGINPLDGLTKMDILTAIRNAT 896
+ + + ET ++ R+ + FH+ + + + I
Sbjct: 382 FNQDITALMQGEETVGEEDIRLFTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFENQYR 441
Query: 897 GPRPALFVPEVSFELLVKRQIRRLEEPSQRCVELVH--EEMQRI------IQHCEKEGNI 948
G FV +FE +VK+QI+ LEEP+ V+++H +M R+ I++ E+ N+
Sbjct: 442 GRELPGFVNYRTFETIVKQQIKALEEPA---VDMLHTVTDMVRLAFTDVSIKNFEEFFNL 498
Query: 949 PATTSSR---TLSEKEKRDCDVIERLIKSYFYI 978
T S+ +E+E+ E+LI+ +F +
Sbjct: 499 HRTAKSKIEDIRAEQEREG----EKLIRLHFQM 527
>pdb|1UX4|A Chain A, Crystal Structures Of A Formin Homology-2 Domain Reveal A
Tethered-Dimer Architecture
pdb|1UX4|B Chain B, Crystal Structures Of A Formin Homology-2 Domain Reveal A
Tethered-Dimer Architecture
Length = 410
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 800 LKTRVNVMISQFQTLLNSYGEDVSDKSQTLLQIITKFASAYCSTVEGTARNIETTE 855
L+ V + I +F++L+++YGED DK + KFA + A+N+ E
Sbjct: 343 LEDEVKLTIMEFESLMHTYGEDSGDKFAK-ISFFKKFADFINEYKKAQAQNLAAEE 397
>pdb|1UX5|A Chain A, Crystal Structures Of A Formin Homology-2 Domain Reveal A
Flexibly Tethered Dimer Architecture
Length = 411
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 800 LKTRVNVMISQFQTLLNSYGEDVSDKSQTLLQIITKFASAYCSTVEGTARNIETTE 855
L+ V + I +F++L+++YGED DK + KFA + A+N+ E
Sbjct: 349 LEDEVKLTIMEFESLMHTYGEDSGDKFAK-ISFFKKFADFINEYKKAQAQNLAAEE 403
>pdb|1Y64|B Chain B, Bni1p Formin Homology 2 Domain Complexed With Atp-actin
Length = 443
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 800 LKTRVNVMISQFQTLLNSYGEDVSDKSQTLLQIITKFASAYCSTVEGTARNIETTE 855
L+ V + I +F++L+++YGED DK + KFA + A+N+ E
Sbjct: 372 LEDEVKLTIMEFESLMHTYGEDSGDKFAK-ISFFKKFADFINEYKKAQAQNLAAEE 426
>pdb|3LJB|A Chain A, Structural Basis Of Oligomerisation In The Mxa Stalk
pdb|3LJB|B Chain B, Structural Basis Of Oligomerisation In The Mxa Stalk
Length = 271
Score = 30.8 bits (68), Expect = 4.3, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 18/85 (21%)
Query: 903 FVPEVSFELLVKRQIRRLEEPSQRCVELVH--EEMQRI------IQHCEKEGNIPATTSS 954
FV +FE +VK+QI+ LEEP+ V+++H +M R+ I++ E+ N+ T S
Sbjct: 83 FVNYRTFETIVKQQIKALEEPA---VDMLHTVTDMVRLAFTDVSIKNFEEFFNLHRTAKS 139
Query: 955 R---TLSEKEKRDCDVIERLIKSYF 976
+ +E+E+ E+LI+ +F
Sbjct: 140 KIEDIRAEQEREG----EKLIRLHF 160
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,004,710
Number of Sequences: 62578
Number of extensions: 1055702
Number of successful extensions: 3265
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 3156
Number of HSP's gapped (non-prelim): 99
length of query: 1036
length of database: 14,973,337
effective HSP length: 109
effective length of query: 927
effective length of database: 8,152,335
effective search space: 7557214545
effective search space used: 7557214545
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)