Query psy5059
Match_columns 1036
No_of_seqs 402 out of 1544
Neff 6.4
Searched_HMMs 29240
Date Sat Aug 17 00:41:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5059.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5059hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zvr_A Dynamin-1; hydrolase, D 100.0 1.1E-91 3.7E-96 857.1 47.1 528 56-1035 23-749 (772)
2 3szr_A Interferon-induced GTP- 100.0 4E-76 1.4E-80 715.1 36.1 539 44-1035 8-590 (608)
3 3zvr_A Dynamin-1; hydrolase, D 100.0 4.3E-49 1.5E-53 481.9 35.2 236 533-768 287-752 (772)
4 3t34_A Dynamin-related protein 100.0 5.5E-44 1.9E-48 407.7 29.4 315 59-586 1-326 (360)
5 2x2e_A Dynamin-1; nitration, h 100.0 3.6E-42 1.2E-46 391.9 34.6 334 56-605 3-345 (353)
6 3szr_A Interferon-induced GTP- 100.0 2.3E-41 7.8E-46 410.6 32.0 210 536-770 291-595 (608)
7 1jwy_B Dynamin A GTPase domain 100.0 3.6E-34 1.2E-38 319.1 27.5 312 61-580 2-315 (315)
8 2aka_B Dynamin-1; fusion prote 100.0 1.1E-31 3.7E-36 296.4 31.1 295 59-569 1-298 (299)
9 3ljb_A Interferon-induced GTP- 99.9 1.7E-28 5.8E-33 266.7 9.8 202 821-1027 2-271 (271)
10 4dcu_A GTP-binding protein ENG 99.8 1.2E-20 4E-25 221.9 16.9 78 369-468 296-373 (456)
11 2hjg_A GTP-binding protein ENG 99.8 2.6E-20 8.9E-25 217.7 16.2 79 369-469 276-354 (436)
12 3ljb_A Interferon-induced GTP- 99.8 3.8E-19 1.3E-23 193.3 16.0 140 617-757 127-271 (271)
13 1mky_A Probable GTP-binding pr 99.8 3.2E-19 1.1E-23 208.6 14.6 79 369-469 282-360 (439)
14 3t34_A Dynamin-related protein 99.8 7.3E-19 2.5E-23 200.3 15.9 50 5-54 32-81 (360)
15 2x2e_A Dynamin-1; nitration, h 99.7 2.2E-17 7.5E-22 187.7 16.4 51 4-54 28-78 (353)
16 2j69_A Bacterial dynamin-like 99.5 1E-13 3.5E-18 170.7 18.4 45 82-126 68-112 (695)
17 2aka_B Dynamin-1; fusion prote 99.5 2.6E-13 9E-18 149.2 16.6 51 4-54 23-73 (299)
18 4dhe_A Probable GTP-binding pr 99.2 8.1E-11 2.8E-15 123.2 12.1 73 369-461 134-208 (223)
19 1svi_A GTP-binding protein YSX 99.1 4E-10 1.4E-14 115.1 15.1 66 370-459 125-190 (195)
20 3pqc_A Probable GTP-binding pr 99.1 2E-09 6.9E-14 109.3 16.0 67 370-460 124-190 (195)
21 3iev_A GTP-binding protein ERA 99.1 2.2E-09 7.6E-14 119.6 17.5 126 240-466 58-184 (308)
22 1wf3_A GTP-binding protein; GT 99.1 2.7E-09 9.3E-14 118.6 18.1 59 379-466 117-175 (301)
23 3iby_A Ferrous iron transport 99.0 6.6E-10 2.3E-14 120.7 8.7 64 370-461 101-164 (256)
24 1jwy_B Dynamin A GTPase domain 99.0 6.5E-10 2.2E-14 123.2 7.5 98 4-185 21-118 (315)
25 1mky_A Probable GTP-binding pr 98.9 2.8E-09 9.5E-14 124.5 11.6 25 83-107 1-25 (439)
26 2dyk_A GTP-binding protein; GT 98.9 5.5E-09 1.9E-13 102.7 11.0 26 83-108 1-26 (161)
27 4dcu_A GTP-binding protein ENG 98.9 2E-09 6.9E-14 126.3 9.3 30 79-108 19-48 (456)
28 2hjg_A GTP-binding protein ENG 98.9 3.4E-09 1.2E-13 123.7 10.1 26 83-108 3-28 (436)
29 2cxx_A Probable GTP-binding pr 98.8 1.7E-08 5.8E-13 102.2 12.2 26 83-108 1-26 (190)
30 2lkc_A Translation initiation 98.8 4.1E-08 1.4E-12 98.3 13.4 27 82-108 7-33 (178)
31 3t5d_A Septin-7; GTP-binding p 98.8 1.8E-08 6.2E-13 110.0 11.1 69 369-463 135-203 (274)
32 1zd9_A ADP-ribosylation factor 98.8 9.3E-08 3.2E-12 97.5 15.0 62 376-461 121-182 (188)
33 3i8s_A Ferrous iron transport 98.7 1E-08 3.4E-13 112.4 8.1 65 371-463 104-168 (274)
34 1ky3_A GTP-binding protein YPT 98.7 1.7E-08 5.9E-13 101.0 8.9 26 83-108 8-33 (182)
35 2qu8_A Putative nucleolar GTP- 98.7 9.1E-08 3.1E-12 101.0 14.7 27 82-108 28-54 (228)
36 2xtp_A GTPase IMAP family memb 98.7 8.1E-08 2.8E-12 103.5 14.2 27 82-108 21-47 (260)
37 2il1_A RAB12; G-protein, GDP, 98.7 2.7E-08 9.3E-13 101.9 9.8 26 83-108 26-51 (192)
38 1upt_A ARL1, ADP-ribosylation 98.7 1E-07 3.5E-12 94.5 13.7 60 377-460 106-165 (171)
39 2erx_A GTP-binding protein DI- 98.7 7.9E-08 2.7E-12 95.1 12.7 25 84-108 4-28 (172)
40 1wms_A RAB-9, RAB9, RAS-relate 98.7 6.6E-08 2.3E-12 96.6 12.2 26 83-108 7-32 (177)
41 1ega_A Protein (GTP-binding pr 98.7 4.3E-08 1.5E-12 108.9 11.2 71 369-465 106-176 (301)
42 2g6b_A RAS-related protein RAB 98.7 2.2E-08 7.6E-13 100.4 8.1 26 83-108 10-35 (180)
43 1u8z_A RAS-related protein RAL 98.7 7E-08 2.4E-12 94.9 11.2 26 83-108 4-29 (168)
44 1r8s_A ADP-ribosylation factor 98.7 1.9E-07 6.7E-12 92.0 14.4 24 85-108 2-25 (164)
45 4bas_A ADP-ribosylation factor 98.7 9.8E-08 3.3E-12 97.4 12.5 28 81-108 15-42 (199)
46 1kao_A RAP2A; GTP-binding prot 98.7 1.1E-07 3.6E-12 93.5 12.1 25 84-108 4-28 (167)
47 2qpt_A EH domain-containing pr 98.7 2.6E-08 8.8E-13 119.6 9.1 40 82-121 64-105 (550)
48 4djt_A GTP-binding nuclear pro 98.7 2.6E-08 9E-13 103.8 7.9 64 373-463 111-174 (218)
49 1z0f_A RAB14, member RAS oncog 98.7 1.3E-07 4.4E-12 94.4 12.4 26 83-108 15-40 (179)
50 3lxx_A GTPase IMAP family memb 98.7 7.6E-08 2.6E-12 102.5 11.4 27 82-108 28-54 (239)
51 1zj6_A ADP-ribosylation factor 98.7 1.4E-07 4.6E-12 95.9 12.6 27 82-108 15-41 (187)
52 3q72_A GTP-binding protein RAD 98.7 2.6E-08 8.8E-13 98.6 7.0 26 83-108 2-27 (166)
53 3gee_A MNME, tRNA modification 98.7 5.1E-08 1.7E-12 115.0 10.7 23 85-107 235-257 (476)
54 2y8e_A RAB-protein 6, GH09086P 98.7 1.1E-07 3.6E-12 95.0 11.6 25 84-108 15-39 (179)
55 2fh5_B SR-beta, signal recogni 98.7 1.4E-07 4.8E-12 98.0 12.9 26 83-108 7-32 (214)
56 2h17_A ADP-ribosylation factor 98.6 1.4E-07 4.6E-12 95.5 12.4 27 82-108 20-46 (181)
57 1fzq_A ADP-ribosylation factor 98.6 1.5E-07 5E-12 95.7 12.3 27 82-108 15-41 (181)
58 1z0j_A RAB-22, RAS-related pro 98.6 7.2E-08 2.5E-12 95.4 9.7 25 84-108 7-31 (170)
59 2gj8_A MNME, tRNA modification 98.6 2.2E-07 7.5E-12 93.8 13.2 25 84-108 5-29 (172)
60 1c1y_A RAS-related protein RAP 98.6 1.1E-07 3.7E-12 93.8 10.7 25 84-108 4-28 (167)
61 2a9k_A RAS-related protein RAL 98.6 1.2E-07 4.2E-12 95.2 11.3 28 81-108 16-43 (187)
62 2bov_A RAla, RAS-related prote 98.6 1.4E-07 4.7E-12 96.9 11.8 28 81-108 12-39 (206)
63 3clv_A RAB5 protein, putative; 98.6 1.8E-07 6.2E-12 95.0 12.6 29 82-110 6-34 (208)
64 2bme_A RAB4A, RAS-related prot 98.6 1.9E-07 6.4E-12 94.2 12.5 26 83-108 10-35 (186)
65 2fn4_A P23, RAS-related protei 98.6 1.1E-07 3.7E-12 95.1 10.6 27 82-108 8-34 (181)
66 3bc1_A RAS-related protein RAB 98.6 1.8E-07 6.1E-12 94.5 12.3 26 83-108 11-36 (195)
67 1z06_A RAS-related protein RAB 98.6 6.2E-08 2.1E-12 98.6 8.9 27 82-108 19-45 (189)
68 1vg8_A RAS-related protein RAB 98.6 2E-07 6.9E-12 95.8 12.8 26 83-108 8-33 (207)
69 3a1s_A Iron(II) transport prot 98.6 1.2E-07 4.1E-12 102.9 11.5 26 83-108 5-30 (258)
70 4dsu_A GTPase KRAS, isoform 2B 98.6 1E-07 3.5E-12 96.1 10.3 25 84-108 5-29 (189)
71 1z08_A RAS-related protein RAB 98.6 1.5E-07 5.1E-12 93.2 11.3 26 83-108 6-31 (170)
72 2nzj_A GTP-binding protein REM 98.6 1.9E-07 6.4E-12 93.0 12.0 26 83-108 4-29 (175)
73 2fg5_A RAB-22B, RAS-related pr 98.6 8.5E-08 2.9E-12 98.1 9.7 26 83-108 23-48 (192)
74 3tkl_A RAS-related protein RAB 98.6 1.6E-07 5.5E-12 95.6 11.5 26 83-108 16-41 (196)
75 1ksh_A ARF-like protein 2; sma 98.6 2.9E-07 1E-11 93.1 13.3 26 82-107 17-42 (186)
76 2h57_A ADP-ribosylation factor 98.6 2.5E-07 8.4E-12 94.2 12.5 26 82-107 20-45 (190)
77 3tw8_B RAS-related protein RAB 98.6 2.8E-07 9.5E-12 92.1 12.6 27 82-108 8-34 (181)
78 3b1v_A Ferrous iron uptake tra 98.6 1.5E-07 5.2E-12 103.1 11.4 25 83-107 3-27 (272)
79 2hxs_A RAB-26, RAS-related pro 98.6 2.5E-07 8.5E-12 92.5 12.1 26 83-108 6-31 (178)
80 2wji_A Ferrous iron transport 98.6 2.3E-07 7.8E-12 92.7 11.5 25 84-108 4-28 (165)
81 1g16_A RAS-related protein SEC 98.6 2.6E-07 8.9E-12 91.3 11.8 25 84-108 4-28 (170)
82 1z2a_A RAS-related protein RAB 98.6 3.2E-07 1.1E-11 90.5 12.3 26 83-108 5-30 (168)
83 2efe_B Small GTP-binding prote 98.6 3.1E-07 1.1E-11 92.1 12.3 26 83-108 12-37 (181)
84 3cph_A RAS-related protein SEC 98.6 3.9E-07 1.3E-11 94.1 13.3 27 82-108 19-45 (213)
85 3k53_A Ferrous iron transport 98.6 1.6E-07 5.4E-12 102.3 10.6 27 82-108 2-28 (271)
86 2oil_A CATX-8, RAS-related pro 98.6 3.3E-07 1.1E-11 93.4 12.4 26 83-108 25-50 (193)
87 1moz_A ARL1, ADP-ribosylation 98.6 1.6E-07 5.4E-12 94.5 9.8 27 82-108 17-43 (183)
88 3dz8_A RAS-related protein RAB 98.6 1E-07 3.5E-12 97.3 8.6 26 83-108 23-48 (191)
89 2p5s_A RAS and EF-hand domain 98.6 1.8E-07 6.1E-12 96.3 10.4 27 82-108 27-53 (199)
90 1xzp_A Probable tRNA modificat 98.6 1E-07 3.5E-12 112.5 9.7 25 84-108 244-268 (482)
91 2x77_A ADP-ribosylation factor 98.6 4.2E-07 1.4E-11 92.3 13.0 26 83-108 22-47 (189)
92 2qtf_A Protein HFLX, GTP-bindi 98.6 6.5E-07 2.2E-11 102.1 15.8 27 82-108 178-204 (364)
93 1r2q_A RAS-related protein RAB 98.6 2.4E-07 8.4E-12 91.3 10.9 25 84-108 7-31 (170)
94 2b6h_A ADP-ribosylation factor 98.6 2.8E-07 9.7E-12 94.5 11.6 26 83-108 29-54 (192)
95 1zbd_A Rabphilin-3A; G protein 98.6 4.4E-07 1.5E-11 93.3 13.0 26 83-108 8-33 (203)
96 2ce2_X GTPase HRAS; signaling 98.5 3E-07 1E-11 90.0 11.2 25 84-108 4-28 (166)
97 1ek0_A Protein (GTP-binding pr 98.5 1E-07 3.5E-12 94.1 7.8 25 84-108 4-28 (170)
98 3con_A GTPase NRAS; structural 98.5 3.5E-07 1.2E-11 92.9 11.7 28 81-108 19-46 (190)
99 2f7s_A C25KG, RAS-related prot 98.5 3.2E-07 1.1E-11 95.4 11.4 26 83-108 25-50 (217)
100 3t5g_A GTP-binding protein RHE 98.5 5.1E-07 1.7E-11 90.8 12.4 26 83-108 6-31 (181)
101 3oes_A GTPase rhebl1; small GT 98.5 3.3E-07 1.1E-11 94.4 11.2 27 82-108 23-49 (201)
102 3q85_A GTP-binding protein REM 98.5 2.6E-07 9.1E-12 91.5 10.0 26 83-108 2-27 (169)
103 2gf9_A RAS-related protein RAB 98.5 3.8E-07 1.3E-11 92.8 11.4 26 83-108 22-47 (189)
104 3lvq_E ARF-GAP with SH3 domain 98.5 3.8E-07 1.3E-11 107.8 13.1 66 373-462 417-482 (497)
105 2hup_A RAS-related protein RAB 98.5 5.1E-07 1.7E-11 93.3 12.5 26 83-108 29-54 (201)
106 3qq5_A Small GTP-binding prote 98.5 2.3E-07 7.9E-12 107.7 10.9 63 371-462 132-194 (423)
107 3kkq_A RAS-related protein M-R 98.5 5.5E-07 1.9E-11 90.7 12.2 27 82-108 17-43 (183)
108 1f6b_A SAR1; gtpases, N-termin 98.5 3.5E-07 1.2E-11 94.4 11.0 27 82-108 24-50 (198)
109 2a5j_A RAS-related protein RAB 98.5 3E-07 1E-11 93.8 10.2 26 83-108 21-46 (191)
110 2o52_A RAS-related protein RAB 98.5 3.1E-07 1E-11 94.8 10.3 26 83-108 25-50 (200)
111 3lxw_A GTPase IMAP family memb 98.5 3.3E-07 1.1E-11 98.7 10.7 26 83-108 21-46 (247)
112 3llu_A RAS-related GTP-binding 98.5 6.7E-07 2.3E-11 91.8 12.4 25 82-106 19-43 (196)
113 1x3s_A RAS-related protein RAB 98.5 5.3E-07 1.8E-11 91.4 11.5 26 83-108 15-40 (195)
114 2bcg_Y Protein YP2, GTP-bindin 98.5 1.2E-06 4.1E-11 90.3 14.3 26 83-108 8-33 (206)
115 2ew1_A RAS-related protein RAB 98.5 7.7E-07 2.6E-11 92.4 12.9 26 83-108 26-51 (201)
116 1m2o_B GTP-binding protein SAR 98.5 4E-07 1.4E-11 93.3 10.5 26 83-108 23-48 (190)
117 2atv_A RERG, RAS-like estrogen 98.5 6E-07 2.1E-11 91.9 11.8 27 82-108 27-53 (196)
118 1h65_A Chloroplast outer envel 98.5 6.8E-07 2.3E-11 97.2 12.6 42 60-108 23-64 (270)
119 3o47_A ADP-ribosylation factor 98.5 3.5E-07 1.2E-11 102.8 10.4 62 375-460 262-323 (329)
120 2gf0_A GTP-binding protein DI- 98.5 6.4E-07 2.2E-11 91.3 11.4 26 83-108 8-33 (199)
121 3t1o_A Gliding protein MGLA; G 98.5 7.5E-07 2.6E-11 90.3 11.8 55 377-459 133-187 (198)
122 2yc2_C IFT27, small RAB-relate 98.5 3.2E-07 1.1E-11 94.1 8.9 23 84-106 21-43 (208)
123 2fu5_C RAS-related protein RAB 98.5 2.5E-07 8.5E-12 93.2 7.9 26 83-108 8-33 (183)
124 1lnz_A SPO0B-associated GTP-bi 98.4 2.8E-07 9.7E-12 104.2 8.9 25 83-107 158-182 (342)
125 3l0i_B RAS-related protein RAB 98.4 1.1E-07 3.9E-12 97.8 4.7 26 83-108 33-58 (199)
126 3tr5_A RF-3, peptide chain rel 98.4 1.1E-06 3.7E-11 104.9 13.4 33 430-462 243-275 (528)
127 2wjg_A FEOB, ferrous iron tran 98.4 8.4E-07 2.9E-11 89.7 10.8 27 82-108 6-32 (188)
128 3j2k_7 ERF3, eukaryotic polype 98.4 2.1E-06 7.3E-11 100.2 14.9 26 82-107 16-41 (439)
129 1mh1_A RAC1; GTP-binding, GTPa 98.4 6E-07 2.1E-11 90.2 8.9 25 84-108 6-30 (186)
130 2j1l_A RHO-related GTP-binding 98.4 7.6E-07 2.6E-11 92.9 9.8 25 84-108 35-59 (214)
131 4gzl_A RAS-related C3 botulinu 98.4 2.3E-07 7.9E-12 96.1 5.8 27 82-108 29-55 (204)
132 3reg_A RHO-like small GTPase; 98.4 6.6E-07 2.3E-11 91.3 9.1 26 83-108 23-48 (194)
133 2q3h_A RAS homolog gene family 98.4 9.3E-07 3.2E-11 90.6 9.8 27 82-108 19-45 (201)
134 2e87_A Hypothetical protein PH 98.4 3.9E-06 1.3E-10 95.2 15.8 27 81-107 165-191 (357)
135 2ged_A SR-beta, signal recogni 98.4 1.4E-06 4.8E-11 88.5 11.0 49 60-108 24-73 (193)
136 1wb1_A Translation elongation 98.4 1.5E-06 5.1E-11 102.7 12.6 59 378-460 124-185 (482)
137 2gco_A H9, RHO-related GTP-bin 98.4 1.2E-06 4E-11 90.3 10.3 25 84-108 26-50 (201)
138 2fv8_A H6, RHO-related GTP-bin 98.3 1.3E-06 4.3E-11 90.6 10.4 25 84-108 26-50 (207)
139 2j0v_A RAC-like GTP-binding pr 98.3 7.2E-07 2.5E-11 92.4 8.5 26 83-108 9-34 (212)
140 2iwr_A Centaurin gamma 1; ANK 98.3 6.7E-07 2.3E-11 89.6 7.8 25 84-108 8-32 (178)
141 3cpj_B GTP-binding protein YPT 98.3 2.8E-06 9.6E-11 89.1 12.9 26 83-108 13-38 (223)
142 1pui_A ENGB, probable GTP-bind 98.3 2E-06 6.8E-11 88.8 11.3 68 371-462 129-197 (210)
143 3c5c_A RAS-like protein 12; GD 98.3 2.5E-06 8.7E-11 86.9 11.6 26 83-108 21-46 (187)
144 2c78_A Elongation factor TU-A; 98.3 2.2E-06 7.6E-11 98.8 12.5 25 82-106 10-34 (405)
145 3ihw_A Centg3; RAS, centaurin, 98.3 1.4E-06 4.9E-11 88.7 9.5 28 81-108 18-45 (184)
146 3geh_A MNME, tRNA modification 98.3 3.8E-07 1.3E-11 107.1 5.9 24 85-108 226-249 (462)
147 3bwd_D RAC-like GTP-binding pr 98.3 4.8E-07 1.6E-11 90.7 5.8 26 83-108 8-33 (182)
148 2atx_A Small GTP binding prote 98.3 1.2E-06 4E-11 89.4 8.7 25 84-108 19-43 (194)
149 3sjy_A Translation initiation 98.3 3.7E-06 1.2E-10 97.0 13.5 57 380-460 130-188 (403)
150 3cbq_A GTP-binding protein REM 98.3 2.9E-06 9.8E-11 87.4 11.2 26 82-107 22-47 (195)
151 3izq_1 HBS1P, elongation facto 98.3 2.1E-06 7.3E-11 104.2 11.9 26 82-107 166-191 (611)
152 4a9a_A Ribosome-interacting GT 98.3 6.5E-06 2.2E-10 94.1 14.9 141 241-393 119-263 (376)
153 3p26_A Elongation factor 1 alp 98.3 1.3E-06 4.4E-11 103.2 9.4 25 82-106 32-56 (483)
154 3izy_P Translation initiation 98.3 2.1E-07 7.1E-12 111.0 2.3 26 83-108 4-29 (537)
155 3def_A T7I23.11 protein; chlor 98.3 3.5E-06 1.2E-10 91.3 11.7 27 82-108 35-61 (262)
156 3r7w_A Gtpase1, GTP-binding pr 98.2 4.8E-06 1.7E-10 92.5 12.5 23 84-106 4-26 (307)
157 3q3j_B RHO-related GTP-binding 98.2 2.1E-06 7.1E-11 89.8 8.4 27 82-108 26-52 (214)
158 2g3y_A GTP-binding protein GEM 98.2 1.4E-05 4.8E-10 84.0 14.6 26 82-107 36-61 (211)
159 1zun_B Sulfate adenylate trans 98.2 7E-06 2.4E-10 95.6 13.0 26 82-107 23-48 (434)
160 3th5_A RAS-related C3 botulinu 97.5 2.1E-07 7.1E-12 96.0 0.0 26 83-108 30-55 (204)
161 3gj0_A GTP-binding nuclear pro 98.2 1.1E-06 3.6E-11 92.0 5.2 26 82-107 14-39 (221)
162 1d2e_A Elongation factor TU (E 98.2 6.3E-06 2.2E-10 94.9 12.1 23 84-106 4-26 (397)
163 1f60_A Elongation factor EEF1A 98.2 3.1E-06 1E-10 99.4 9.4 24 83-106 7-30 (458)
164 2elf_A Protein translation elo 98.2 7.5E-06 2.6E-10 93.5 12.2 59 377-460 109-176 (370)
165 4dkx_A RAS-related protein RAB 98.1 5.7E-06 2E-10 87.4 10.0 24 85-108 15-38 (216)
166 2ywe_A GTP-binding protein LEP 98.1 7.6E-06 2.6E-10 98.8 12.3 59 377-461 123-181 (600)
167 1g7s_A Translation initiation 98.1 5.7E-06 2E-10 100.0 10.4 27 82-108 4-30 (594)
168 1kk1_A EIF2gamma; initiation o 98.1 1.5E-05 5E-10 92.1 13.3 57 380-460 138-196 (410)
169 3cb4_D GTP-binding protein LEP 98.1 6.8E-06 2.3E-10 99.4 10.8 59 377-461 121-179 (599)
170 1m7b_A RND3/RHOE small GTP-bin 98.1 6.9E-06 2.4E-10 83.1 8.9 26 83-108 7-32 (184)
171 1gwn_A RHO-related GTP-binding 98.1 6.2E-06 2.1E-10 85.7 8.5 26 83-108 28-53 (205)
172 1jny_A EF-1-alpha, elongation 98.1 1.7E-05 5.9E-10 92.4 13.0 24 83-106 6-29 (435)
173 2qag_B Septin-6, protein NEDD5 98.1 4.8E-06 1.6E-10 96.5 8.1 67 352-445 151-217 (427)
174 1nrj_B SR-beta, signal recogni 98.1 2.5E-06 8.7E-11 88.6 5.1 27 82-108 11-37 (218)
175 3mca_A HBS1, elongation factor 98.0 1.8E-06 6.3E-11 104.4 4.4 25 83-107 177-201 (592)
176 2qag_C Septin-7; cell cycle, c 98.0 7.7E-06 2.6E-10 94.8 9.4 25 85-109 33-57 (418)
177 1zo1_I IF2, translation initia 98.0 3.7E-06 1.3E-10 99.5 6.4 26 82-107 3-28 (501)
178 1s0u_A EIF-2-gamma, translatio 98.0 2.4E-05 8.4E-10 90.2 13.2 57 380-460 136-194 (408)
179 2zej_A Dardarin, leucine-rich 98.0 6.7E-06 2.3E-10 83.4 7.4 23 84-106 3-25 (184)
180 2qag_A Septin-2, protein NEDD5 98.0 5.7E-06 2E-10 94.1 7.7 25 84-108 38-62 (361)
181 2cjw_A GTP-binding protein GEM 98.0 7.2E-06 2.5E-10 84.1 7.3 25 83-107 6-30 (192)
182 2xex_A Elongation factor G; GT 98.0 1.2E-05 3.9E-10 99.2 10.3 38 426-463 242-279 (693)
183 2wkq_A NPH1-1, RAS-related C3 98.0 7.7E-06 2.6E-10 90.4 7.0 27 82-108 154-180 (332)
184 2rdo_7 EF-G, elongation factor 98.0 5.4E-05 1.8E-09 93.4 15.0 33 430-462 254-286 (704)
185 2h5e_A Peptide chain release f 97.9 5.1E-05 1.8E-09 90.6 14.0 30 434-463 248-277 (529)
186 3avx_A Elongation factor TS, e 97.9 4.1E-05 1.4E-09 97.5 13.0 25 82-106 295-319 (1289)
187 1dar_A EF-G, elongation factor 97.9 3.5E-05 1.2E-09 94.8 12.3 36 427-462 245-280 (691)
188 3dpu_A RAB family protein; roc 97.9 2.7E-05 9.3E-10 93.0 10.2 29 80-108 38-66 (535)
189 1wxq_A GTP-binding protein; st 97.8 2.8E-05 9.7E-10 89.6 9.0 38 85-122 2-39 (397)
190 2f9l_A RAB11B, member RAS onco 97.8 8.7E-05 3E-09 76.1 10.5 26 83-108 5-30 (199)
191 3p32_A Probable GTPase RV1496/ 97.8 6.1E-05 2.1E-09 85.4 10.1 25 82-106 78-102 (355)
192 3h2y_A GTPase family protein; 97.7 6.9E-05 2.3E-09 85.5 9.4 24 84-107 161-184 (368)
193 3c5h_A Glucocorticoid receptor 97.7 5.4E-05 1.9E-09 81.6 7.8 54 377-458 196-249 (255)
194 3ec1_A YQEH GTPase; atnos1, at 97.7 2.3E-05 7.8E-10 89.4 4.5 23 84-106 163-185 (369)
195 2dy1_A Elongation factor G; tr 97.6 0.00018 6.3E-09 88.2 12.6 34 428-461 238-271 (665)
196 1oix_A RAS-related protein RAB 97.6 7.3E-05 2.5E-09 76.4 7.5 26 83-108 29-54 (191)
197 1n0u_A EF-2, elongation factor 97.5 9.4E-05 3.2E-09 93.0 7.6 25 82-106 18-42 (842)
198 2www_A Methylmalonic aciduria 97.5 0.00013 4.5E-09 82.5 8.0 26 81-106 72-97 (349)
199 2qnr_A Septin-2, protein NEDD5 97.5 0.00014 4.6E-09 80.7 7.5 23 85-107 20-42 (301)
200 1r5b_A Eukaryotic peptide chai 97.4 6.2E-05 2.1E-09 88.5 4.5 24 82-105 42-65 (467)
201 2wsm_A Hydrogenase expression/ 97.4 0.00016 5.3E-09 75.3 7.0 26 82-107 29-54 (221)
202 2qm8_A GTPase/ATPase; G protei 97.4 0.00023 7.8E-09 80.2 7.9 25 83-107 55-79 (337)
203 1x3s_A RAS-related protein RAB 97.3 0.00024 8.1E-09 71.7 6.8 27 7-33 15-41 (195)
204 1udx_A The GTP-binding protein 97.3 0.0015 5.1E-08 75.6 13.9 25 83-107 157-181 (416)
205 2p67_A LAO/AO transport system 97.3 0.00018 6.3E-09 80.9 6.0 25 82-106 55-79 (341)
206 2j37_W Signal recognition part 97.1 0.00071 2.4E-08 80.1 8.8 67 382-461 243-310 (504)
207 3t5g_A GTP-binding protein RHE 97.1 0.0006 2.1E-08 68.0 6.3 27 7-33 6-32 (181)
208 1puj_A YLQF, conserved hypothe 97.1 0.00051 1.7E-08 75.4 6.3 24 84-107 121-144 (282)
209 1tq4_A IIGP1, interferon-induc 97.0 0.0014 4.7E-08 75.8 9.2 84 369-469 165-258 (413)
210 2j69_A Bacterial dynamin-like 97.0 0.00044 1.5E-08 85.2 5.1 44 7-50 69-112 (695)
211 3vqt_A RF-3, peptide chain rel 96.9 0.002 7E-08 77.1 10.4 95 369-463 142-294 (548)
212 2hf9_A Probable hydrogenase ni 96.9 0.0031 1.1E-07 65.6 10.4 27 82-108 37-63 (226)
213 3sop_A Neuronal-specific septi 96.9 0.0017 6E-08 70.7 8.3 23 85-107 4-26 (270)
214 1f5n_A Interferon-induced guan 96.9 0.0012 4.1E-08 79.5 7.6 26 82-107 37-62 (592)
215 4a9a_A Ribosome-interacting GT 96.9 0.00057 2E-08 78.0 4.6 45 7-51 72-116 (376)
216 3j25_A Tetracycline resistance 96.9 0.0017 5.7E-08 79.3 8.8 93 369-461 109-236 (638)
217 3dm5_A SRP54, signal recogniti 96.9 0.011 3.7E-07 68.8 15.1 22 84-105 101-122 (443)
218 1yrb_A ATP(GTP)binding protein 96.7 0.0056 1.9E-07 65.2 10.9 23 82-104 13-35 (262)
219 2cxx_A Probable GTP-binding pr 96.7 0.0012 4.2E-08 66.1 5.3 42 7-48 1-42 (190)
220 4fn5_A EF-G 1, elongation fact 96.7 0.0064 2.2E-07 75.0 12.6 37 427-463 254-290 (709)
221 2ohf_A Protein OLA1, GTP-bindi 96.7 0.0014 4.6E-08 75.3 6.0 26 83-108 22-47 (396)
222 2wjg_A FEOB, ferrous iron tran 96.7 0.0012 4.2E-08 66.1 4.7 34 1-34 1-34 (188)
223 2dby_A GTP-binding protein; GD 96.6 0.0046 1.6E-07 70.4 9.1 24 84-107 2-25 (368)
224 1jal_A YCHF protein; nucleotid 96.5 0.0011 3.9E-08 75.2 3.8 25 84-108 3-27 (363)
225 3r7w_B Gtpase2, GTP-binding pr 96.5 0.016 5.5E-07 64.9 13.0 22 85-106 1-22 (331)
226 3iby_A Ferrous iron transport 96.4 0.0017 6E-08 70.0 4.3 27 7-33 1-27 (256)
227 3cnl_A YLQF, putative uncharac 96.4 0.0039 1.3E-07 67.6 6.7 24 84-107 100-123 (262)
228 3lxx_A GTPase IMAP family memb 96.3 0.0024 8E-08 67.6 4.6 40 6-45 28-69 (239)
229 2lkc_A Translation initiation 96.2 0.0028 9.7E-08 62.7 4.2 29 6-34 7-35 (178)
230 2dyk_A GTP-binding protein; GT 96.2 0.003 1E-07 61.3 4.1 27 7-33 1-27 (161)
231 1svi_A GTP-binding protein YSX 96.2 0.0022 7.7E-08 64.6 3.2 28 6-33 22-49 (195)
232 3lxw_A GTPase IMAP family memb 96.1 0.004 1.4E-07 66.6 4.8 39 8-46 22-62 (247)
233 3kl4_A SRP54, signal recogniti 96.1 0.019 6.6E-07 66.6 10.8 22 85-106 99-120 (433)
234 2wji_A Ferrous iron transport 96.0 0.0043 1.5E-07 61.3 4.3 26 7-32 3-28 (165)
235 2nzj_A GTP-binding protein REM 96.0 0.0029 9.9E-08 62.3 2.8 27 6-32 3-29 (175)
236 2qu8_A Putative nucleolar GTP- 95.9 0.0035 1.2E-07 65.6 3.5 28 7-34 29-56 (228)
237 3i8s_A Ferrous iron transport 95.9 0.0043 1.5E-07 67.5 4.3 28 6-33 2-29 (274)
238 4dhe_A Probable GTP-binding pr 95.9 0.0043 1.5E-07 64.1 3.9 28 6-33 28-55 (223)
239 3tw8_B RAS-related protein RAB 95.9 0.0047 1.6E-07 61.0 3.9 29 6-34 8-36 (181)
240 1u8z_A RAS-related protein RAL 95.8 0.0042 1.4E-07 60.3 3.4 29 5-33 2-30 (168)
241 3b1v_A Ferrous iron uptake tra 95.8 0.0065 2.2E-07 66.2 5.1 26 7-32 3-28 (272)
242 1g16_A RAS-related protein SEC 95.8 0.0054 1.8E-07 59.9 4.0 28 8-35 4-31 (170)
243 1z0j_A RAB-22, RAS-related pro 95.8 0.0041 1.4E-07 60.8 3.1 27 7-33 6-32 (170)
244 3q72_A GTP-binding protein RAD 95.8 0.0056 1.9E-07 59.7 4.0 28 7-34 2-29 (166)
245 2qtf_A Protein HFLX, GTP-bindi 95.8 0.0054 1.9E-07 69.7 4.3 39 6-44 178-216 (364)
246 3k53_A Ferrous iron transport 95.8 0.0056 1.9E-07 66.2 4.2 28 5-32 1-28 (271)
247 3clv_A RAB5 protein, putative; 95.8 0.0085 2.9E-07 60.1 5.3 29 6-34 6-34 (208)
248 3a1s_A Iron(II) transport prot 95.7 0.0051 1.7E-07 66.4 3.8 29 5-33 3-31 (258)
249 2bov_A RAla, RAS-related prote 95.7 0.0049 1.7E-07 62.6 3.4 31 4-34 11-41 (206)
250 3pqc_A Probable GTP-binding pr 95.7 0.0086 3E-07 59.9 5.2 28 5-32 21-48 (195)
251 1kao_A RAP2A; GTP-binding prot 95.7 0.0058 2E-07 59.3 3.7 27 8-34 4-30 (167)
252 1ek0_A Protein (GTP-binding pr 95.7 0.0059 2E-07 59.5 3.7 27 8-34 4-30 (170)
253 1ega_A Protein (GTP-binding pr 95.6 0.0065 2.2E-07 67.0 4.3 30 5-34 6-35 (301)
254 2ged_A SR-beta, signal recogni 95.6 0.0057 2E-07 61.6 3.4 27 6-32 47-73 (193)
255 3cph_A RAS-related protein SEC 95.6 0.0087 3E-07 61.1 4.7 30 6-35 19-48 (213)
256 2y8e_A RAB-protein 6, GH09086P 95.6 0.0078 2.7E-07 59.3 4.2 28 8-35 15-42 (179)
257 2erx_A GTP-binding protein DI- 95.6 0.006 2.1E-07 59.6 3.4 25 8-32 4-28 (172)
258 1wms_A RAB-9, RAB9, RAS-relate 95.6 0.0051 1.7E-07 60.7 2.8 27 6-32 6-32 (177)
259 2gj8_A MNME, tRNA modification 95.6 0.0056 1.9E-07 61.2 3.1 24 8-31 5-28 (172)
260 3q85_A GTP-binding protein REM 95.6 0.0068 2.3E-07 59.3 3.6 27 7-33 2-28 (169)
261 1wf3_A GTP-binding protein; GT 95.5 0.0054 1.9E-07 67.8 3.2 27 6-32 6-32 (301)
262 1ky3_A GTP-binding protein YPT 95.5 0.009 3.1E-07 59.0 4.5 28 7-34 8-35 (182)
263 1z08_A RAS-related protein RAB 95.5 0.0097 3.3E-07 58.2 4.6 28 8-35 7-34 (170)
264 2fn4_A P23, RAS-related protei 95.5 0.006 2.1E-07 60.2 3.1 28 6-33 8-35 (181)
265 2qpt_A EH domain-containing pr 95.5 0.0093 3.2E-07 71.5 5.2 28 6-33 64-91 (550)
266 1z2a_A RAS-related protein RAB 95.5 0.011 3.7E-07 57.5 4.9 27 8-34 6-32 (168)
267 1r2q_A RAS-related protein RAB 95.5 0.0063 2.1E-07 59.3 3.1 27 7-33 6-32 (170)
268 4dsu_A GTPase KRAS, isoform 2B 95.5 0.0072 2.5E-07 60.2 3.6 27 8-34 5-31 (189)
269 3iev_A GTP-binding protein ERA 95.5 0.011 3.7E-07 65.5 5.3 29 6-34 9-37 (308)
270 4bas_A ADP-ribosylation factor 95.4 0.0061 2.1E-07 61.5 2.9 29 5-33 15-43 (199)
271 1jal_A YCHF protein; nucleotid 95.4 0.007 2.4E-07 68.7 3.5 25 8-32 3-27 (363)
272 1wxq_A GTP-binding protein; st 95.4 0.0059 2E-07 70.2 3.0 39 9-47 2-40 (397)
273 1c1y_A RAS-related protein RAP 95.4 0.0064 2.2E-07 59.2 2.8 25 8-32 4-28 (167)
274 1vg8_A RAS-related protein RAB 95.4 0.01 3.5E-07 60.3 4.5 29 7-35 8-36 (207)
275 1f5n_A Interferon-induced guan 95.4 0.0068 2.3E-07 73.0 3.5 26 6-31 37-62 (592)
276 1upt_A ARL1, ADP-ribosylation 95.4 0.0079 2.7E-07 58.9 3.4 26 7-32 7-32 (171)
277 1z06_A RAS-related protein RAB 95.4 0.0077 2.6E-07 60.6 3.4 29 6-34 19-47 (189)
278 2cjw_A GTP-binding protein GEM 95.3 0.0064 2.2E-07 62.0 2.7 24 7-30 6-29 (192)
279 2g6b_A RAS-related protein RAB 95.3 0.0076 2.6E-07 59.6 3.1 26 8-33 11-36 (180)
280 2bme_A RAB4A, RAS-related prot 95.3 0.0096 3.3E-07 59.3 3.9 29 7-35 10-38 (186)
281 2ce2_X GTPase HRAS; signaling 95.3 0.0068 2.3E-07 58.6 2.6 26 8-33 4-29 (166)
282 1z0f_A RAB14, member RAS oncog 95.3 0.0091 3.1E-07 58.8 3.5 27 7-33 15-41 (179)
283 2a9k_A RAS-related protein RAL 95.3 0.0084 2.9E-07 59.5 3.2 31 4-34 15-45 (187)
284 1puj_A YLQF, conserved hypothe 95.3 0.0081 2.8E-07 65.8 3.3 25 8-32 121-145 (282)
285 2hxs_A RAB-26, RAS-related pro 95.3 0.0079 2.7E-07 59.4 2.9 27 6-32 5-31 (178)
286 2oil_A CATX-8, RAS-related pro 95.2 0.0083 2.8E-07 60.5 3.1 27 7-33 25-51 (193)
287 3bc1_A RAS-related protein RAB 95.2 0.0084 2.9E-07 59.8 3.1 27 7-33 11-37 (195)
288 2gf9_A RAS-related protein RAB 95.2 0.0086 2.9E-07 60.2 3.1 26 8-33 23-48 (189)
289 1m7b_A RND3/RHOE small GTP-bin 95.2 0.0073 2.5E-07 60.6 2.5 31 2-32 2-32 (184)
290 2www_A Methylmalonic aciduria 95.2 0.0072 2.5E-07 68.2 2.7 25 6-30 73-97 (349)
291 3oes_A GTPase rhebl1; small GT 95.2 0.0073 2.5E-07 61.6 2.5 28 6-33 23-50 (201)
292 1r8s_A ADP-ribosylation factor 95.2 0.0074 2.5E-07 58.8 2.4 24 9-32 2-25 (164)
293 2iwr_A Centaurin gamma 1; ANK 95.2 0.0072 2.5E-07 59.9 2.3 28 6-33 6-33 (178)
294 3tkl_A RAS-related protein RAB 95.1 0.014 4.8E-07 58.6 4.5 28 8-35 17-44 (196)
295 2zej_A Dardarin, leucine-rich 95.1 0.0093 3.2E-07 60.0 3.0 23 8-30 3-25 (184)
296 2h17_A ADP-ribosylation factor 95.1 0.0092 3.2E-07 59.7 2.9 27 6-32 20-46 (181)
297 3con_A GTPase NRAS; structural 95.1 0.01 3.4E-07 59.6 3.1 29 5-33 19-47 (190)
298 1ni3_A YCHF GTPase, YCHF GTP-b 95.1 0.011 3.8E-07 67.8 3.8 38 8-45 21-59 (392)
299 1fzq_A ADP-ribosylation factor 95.1 0.01 3.6E-07 59.5 3.2 27 6-32 15-41 (181)
300 2efe_B Small GTP-binding prote 95.1 0.01 3.5E-07 58.8 3.1 25 8-32 13-37 (181)
301 1nrj_B SR-beta, signal recogni 95.1 0.011 3.8E-07 60.8 3.5 27 6-32 11-37 (218)
302 1h65_A Chloroplast outer envel 95.0 0.017 5.7E-07 62.4 5.0 41 7-47 39-80 (270)
303 3cbq_A GTP-binding protein REM 95.0 0.0077 2.6E-07 61.5 2.2 25 7-31 23-47 (195)
304 2fh5_B SR-beta, signal recogni 95.0 0.013 4.3E-07 60.3 3.7 30 6-35 6-35 (214)
305 1zbd_A Rabphilin-3A; G protein 95.0 0.012 4E-07 59.9 3.4 27 7-33 8-34 (203)
306 2g3y_A GTP-binding protein GEM 95.0 0.011 3.9E-07 61.7 3.3 25 7-31 37-61 (211)
307 1zd9_A ADP-ribosylation factor 95.0 0.011 3.7E-07 59.7 3.0 25 8-32 23-47 (188)
308 2xtp_A GTPase IMAP family memb 95.0 0.019 6.6E-07 61.2 5.1 29 6-34 21-49 (260)
309 3dz8_A RAS-related protein RAB 94.9 0.0089 3E-07 60.3 2.3 27 7-33 23-49 (191)
310 2il1_A RAB12; G-protein, GDP, 94.9 0.015 5.1E-07 58.9 4.0 27 8-34 27-53 (192)
311 2a5j_A RAS-related protein RAB 94.9 0.012 4.1E-07 59.4 3.1 27 7-33 21-47 (191)
312 2gf0_A GTP-binding protein DI- 94.9 0.011 3.9E-07 59.5 2.9 26 7-32 8-33 (199)
313 2atv_A RERG, RAS-like estrogen 94.9 0.012 4.1E-07 59.6 3.1 26 7-32 28-53 (196)
314 3kkq_A RAS-related protein M-R 94.9 0.012 4.2E-07 58.4 3.1 26 7-32 18-43 (183)
315 1zj6_A ADP-ribosylation factor 94.8 0.012 4.2E-07 58.9 3.1 26 7-32 16-41 (187)
316 3c5c_A RAS-like protein 12; GD 94.8 0.012 4.3E-07 59.3 3.1 25 8-32 22-46 (187)
317 1pui_A ENGB, probable GTP-bind 94.8 0.0095 3.3E-07 60.9 2.2 25 8-32 27-51 (210)
318 2ohf_A Protein OLA1, GTP-bindi 94.8 0.012 4E-07 67.6 3.1 25 8-32 23-47 (396)
319 2fg5_A RAB-22B, RAS-related pr 94.8 0.012 4.1E-07 59.5 2.8 26 7-32 23-48 (192)
320 3t5d_A Septin-7; GTP-binding p 94.8 0.012 4.2E-07 63.6 3.0 26 9-34 10-35 (274)
321 1mh1_A RAC1; GTP-binding, GTPa 94.8 0.014 4.7E-07 58.0 3.1 28 5-32 3-30 (186)
322 2o52_A RAS-related protein RAB 94.8 0.017 5.8E-07 58.9 3.9 28 7-34 25-52 (200)
323 2p5s_A RAS and EF-hand domain 94.7 0.013 4.6E-07 59.5 3.0 26 7-32 28-53 (199)
324 4djt_A GTP-binding nuclear pro 94.7 0.011 3.8E-07 60.9 2.4 25 8-32 12-36 (218)
325 1moz_A ARL1, ADP-ribosylation 94.7 0.011 3.7E-07 58.8 2.2 26 7-32 18-43 (183)
326 2f9l_A RAB11B, member RAS onco 94.7 0.014 4.8E-07 59.4 3.0 26 7-32 5-30 (199)
327 2bcg_Y Protein YP2, GTP-bindin 94.6 0.023 8E-07 57.8 4.6 28 7-34 8-35 (206)
328 1oix_A RAS-related protein RAB 94.6 0.013 4.6E-07 59.4 2.8 25 8-32 30-54 (191)
329 3ihw_A Centg3; RAS, centaurin, 94.6 0.015 5.1E-07 58.7 3.1 28 5-32 18-45 (184)
330 3bwd_D RAC-like GTP-binding pr 94.6 0.015 5.2E-07 57.5 3.0 27 6-32 7-33 (182)
331 3reg_A RHO-like small GTPase; 94.6 0.015 5.3E-07 58.6 3.1 25 8-32 24-48 (194)
332 1lnz_A SPO0B-associated GTP-bi 94.6 0.019 6.5E-07 64.6 4.1 25 7-31 158-182 (342)
333 2x77_A ADP-ribosylation factor 94.6 0.013 4.4E-07 58.9 2.4 26 7-32 22-47 (189)
334 2dby_A GTP-binding protein; GD 94.6 0.013 4.6E-07 66.5 2.9 24 8-31 2-25 (368)
335 2h57_A ADP-ribosylation factor 94.6 0.013 4.4E-07 59.0 2.3 26 6-31 20-45 (190)
336 1m2o_B GTP-binding protein SAR 94.5 0.015 5.3E-07 58.8 2.9 26 7-32 23-48 (190)
337 1ksh_A ARF-like protein 2; sma 94.5 0.016 5.6E-07 57.8 3.0 25 7-31 18-42 (186)
338 2fv8_A H6, RHO-related GTP-bin 94.5 0.014 4.8E-07 59.8 2.5 25 8-32 26-50 (207)
339 2f7s_A C25KG, RAS-related prot 94.5 0.019 6.4E-07 59.1 3.4 25 8-32 26-50 (217)
340 2b6h_A ADP-ribosylation factor 94.4 0.017 5.9E-07 58.6 3.0 26 7-32 29-54 (192)
341 2fu5_C RAS-related protein RAB 94.4 0.012 4E-07 58.6 1.7 26 7-32 8-33 (183)
342 2e87_A Hypothetical protein PH 94.4 0.031 1E-06 63.0 5.3 27 6-32 166-192 (357)
343 1f6b_A SAR1; gtpases, N-termin 94.4 0.016 5.5E-07 59.2 2.6 26 7-32 25-50 (198)
344 2q3h_A RAS homolog gene family 94.3 0.018 6.1E-07 58.4 2.9 27 6-32 19-45 (201)
345 2ew1_A RAS-related protein RAB 94.3 0.018 6.1E-07 59.2 2.9 25 8-32 27-51 (201)
346 2gco_A H9, RHO-related GTP-bin 94.3 0.024 8.2E-07 57.8 3.6 25 9-33 27-51 (201)
347 1gwn_A RHO-related GTP-binding 94.3 0.019 6.5E-07 59.2 2.9 25 8-32 29-53 (205)
348 3cnl_A YLQF, putative uncharac 94.2 0.02 6.7E-07 62.1 3.1 25 8-32 100-124 (262)
349 3q3j_B RHO-related GTP-binding 94.2 0.022 7.4E-07 59.0 3.1 28 5-32 25-52 (214)
350 2hup_A RAS-related protein RAB 94.2 0.02 6.8E-07 58.6 2.8 26 7-32 29-54 (201)
351 3mca_A HBS1, elongation factor 94.1 0.076 2.6E-06 64.1 8.1 64 44-107 317-395 (592)
352 1rj9_A FTSY, signal recognitio 94.1 0.031 1E-06 61.9 4.3 23 85-107 104-126 (304)
353 2j1l_A RHO-related GTP-binding 94.0 0.022 7.4E-07 58.9 2.8 25 8-32 35-59 (214)
354 3cpj_B GTP-binding protein YPT 94.0 0.024 8.2E-07 58.9 3.1 26 7-32 13-38 (223)
355 2atx_A Small GTP binding prote 94.0 0.023 7.9E-07 57.2 2.9 25 8-32 19-43 (194)
356 3def_A T7I23.11 protein; chlor 93.9 0.046 1.6E-06 58.7 5.1 27 7-33 36-62 (262)
357 2yhs_A FTSY, cell division pro 93.8 0.22 7.5E-06 58.6 10.9 43 369-411 428-470 (503)
358 3l0i_B RAS-related protein RAB 93.8 0.013 4.6E-07 59.5 0.6 25 8-32 34-58 (199)
359 2wsm_A Hydrogenase expression/ 93.7 0.023 8E-07 58.6 2.4 26 6-31 29-54 (221)
360 4gzl_A RAS-related C3 botulinu 93.7 0.031 1.1E-06 57.2 3.3 26 8-33 31-56 (204)
361 3e70_C DPA, signal recognition 93.6 0.14 4.9E-06 57.1 8.6 23 85-107 131-153 (328)
362 1j8m_F SRP54, signal recogniti 93.6 0.55 1.9E-05 51.6 13.2 22 85-106 100-121 (297)
363 2j0v_A RAC-like GTP-binding pr 93.5 0.031 1.1E-06 57.2 2.9 26 7-32 9-34 (212)
364 1xzp_A Probable tRNA modificat 93.4 0.018 6E-07 67.9 0.8 25 8-32 244-268 (482)
365 3izq_1 HBS1P, elongation facto 93.4 0.23 8E-06 60.1 10.7 23 7-29 167-189 (611)
366 3llu_A RAS-related GTP-binding 93.4 0.035 1.2E-06 56.3 3.0 25 6-30 19-43 (196)
367 3t1o_A Gliding protein MGLA; G 93.4 0.033 1.1E-06 55.7 2.7 23 8-30 15-37 (198)
368 2qag_C Septin-7; cell cycle, c 93.3 0.044 1.5E-06 63.3 4.0 30 9-38 33-62 (418)
369 3ec1_A YQEH GTPase; atnos1, at 93.3 0.18 6.2E-06 57.1 9.0 96 339-461 62-159 (369)
370 2hf9_A Probable hydrogenase ni 93.3 0.031 1.1E-06 57.9 2.4 27 6-32 37-63 (226)
371 2yc2_C IFT27, small RAB-relate 93.2 0.02 6.7E-07 58.0 0.8 23 8-30 21-43 (208)
372 3j2k_7 ERF3, eukaryotic polype 93.2 0.17 5.9E-06 58.7 8.8 24 6-29 16-39 (439)
373 4dkx_A RAS-related protein RAB 93.2 0.041 1.4E-06 57.7 3.1 24 9-32 15-38 (216)
374 2qag_B Septin-6, protein NEDD5 93.0 0.035 1.2E-06 64.3 2.5 24 8-31 43-66 (427)
375 3p26_A Elongation factor 1 alp 92.9 0.075 2.6E-06 62.5 5.2 22 8-29 34-55 (483)
376 3q5d_A Atlastin-1; G protein, 92.9 0.053 1.8E-06 63.1 3.8 22 9-30 69-90 (447)
377 3r7w_A Gtpase1, GTP-binding pr 92.9 0.045 1.5E-06 60.4 3.0 23 8-30 4-26 (307)
378 1vma_A Cell division protein F 92.8 0.15 5E-06 56.5 7.1 23 85-107 106-128 (306)
379 3gee_A MNME, tRNA modification 92.8 0.039 1.3E-06 64.9 2.6 23 9-31 235-257 (476)
380 3th5_A RAS-related C3 botulinu 91.9 0.021 7E-07 58.2 0.0 25 8-32 31-55 (204)
381 3sop_A Neuronal-specific septi 92.6 0.043 1.5E-06 59.6 2.4 23 9-31 4-26 (270)
382 3gj0_A GTP-binding nuclear pro 92.5 0.031 1E-06 57.8 1.0 26 7-32 15-40 (221)
383 3c5h_A Glucocorticoid receptor 92.5 0.059 2E-06 57.7 3.2 25 6-30 18-51 (255)
384 2px0_A Flagellar biosynthesis 92.4 0.78 2.7E-05 50.3 12.3 170 86-417 108-277 (296)
385 3geh_A MNME, tRNA modification 92.4 0.047 1.6E-06 64.0 2.4 23 9-31 226-248 (462)
386 3h2y_A GTPase family protein; 92.2 0.22 7.7E-06 56.4 7.7 98 337-461 58-157 (368)
387 3lvq_E ARF-GAP with SH3 domain 92.1 0.062 2.1E-06 63.1 3.0 25 8-32 323-347 (497)
388 1tq4_A IIGP1, interferon-induc 92.0 0.058 2E-06 62.3 2.5 24 8-31 70-93 (413)
389 1jny_A EF-1-alpha, elongation 91.9 0.17 6E-06 58.5 6.6 24 6-29 5-28 (435)
390 3o47_A ADP-ribosylation factor 91.8 0.071 2.4E-06 59.4 2.9 24 9-32 167-190 (329)
391 2xxa_A Signal recognition part 91.6 0.66 2.3E-05 53.7 11.0 20 85-104 102-121 (433)
392 2qnr_A Septin-2, protein NEDD5 91.6 0.068 2.3E-06 58.9 2.5 26 9-34 20-45 (301)
393 2rcn_A Probable GTPase ENGC; Y 91.6 0.078 2.7E-06 60.0 3.0 23 9-31 217-239 (358)
394 1np6_A Molybdopterin-guanine d 91.6 0.083 2.8E-06 53.6 2.9 24 7-30 6-29 (174)
395 3dpu_A RAB family protein; roc 91.5 0.077 2.6E-06 63.1 3.0 28 5-32 39-66 (535)
396 2qm8_A GTPase/ATPase; G protei 91.4 0.072 2.5E-06 59.7 2.4 24 8-31 56-79 (337)
397 1lvg_A Guanylate kinase, GMP k 91.3 0.08 2.7E-06 54.4 2.5 22 9-30 6-27 (198)
398 1kgd_A CASK, peripheral plasma 91.3 0.082 2.8E-06 53.3 2.5 23 8-30 6-28 (180)
399 1zp6_A Hypothetical protein AT 91.2 0.085 2.9E-06 53.1 2.6 22 9-30 11-32 (191)
400 3c8u_A Fructokinase; YP_612366 91.1 0.082 2.8E-06 54.5 2.4 23 9-31 24-46 (208)
401 1ye8_A Protein THEP1, hypothet 91.1 0.087 3E-06 53.5 2.5 23 9-31 2-24 (178)
402 1ni3_A YCHF GTPase, YCHF GTP-b 91.1 0.092 3.2E-06 60.1 2.9 40 84-123 21-61 (392)
403 1t9h_A YLOQ, probable GTPase E 91.0 0.048 1.6E-06 60.5 0.5 23 9-31 175-197 (307)
404 1wb1_A Translation elongation 91.0 0.29 9.8E-06 57.6 7.1 27 5-31 17-43 (482)
405 3tr0_A Guanylate kinase, GMP k 90.9 0.093 3.2E-06 53.3 2.5 22 9-30 9-30 (205)
406 1udx_A The GTP-binding protein 90.8 0.13 4.6E-06 59.3 4.0 25 7-31 157-181 (416)
407 2wkq_A NPH1-1, RAS-related C3 90.7 0.12 4.1E-06 56.5 3.3 27 7-33 155-181 (332)
408 1znw_A Guanylate kinase, GMP k 90.7 0.099 3.4E-06 53.9 2.5 23 9-31 22-44 (207)
409 2qag_A Septin-2, protein NEDD5 90.5 0.11 3.7E-06 58.8 2.9 25 9-33 39-63 (361)
410 3izy_P Translation initiation 90.5 0.074 2.5E-06 63.4 1.5 28 7-34 4-31 (537)
411 1u0l_A Probable GTPase ENGC; p 90.3 0.14 4.6E-06 56.4 3.3 23 9-31 171-193 (301)
412 2f1r_A Molybdopterin-guanine d 90.1 0.08 2.7E-06 53.6 1.2 29 7-36 2-30 (171)
413 2og2_A Putative signal recogni 90.0 0.42 1.4E-05 54.0 7.1 175 86-411 160-335 (359)
414 3tau_A Guanylate kinase, GMP k 90.0 0.16 5.6E-06 52.4 3.4 23 9-31 10-32 (208)
415 1s96_A Guanylate kinase, GMP k 89.9 0.12 4.3E-06 54.2 2.5 23 9-31 18-40 (219)
416 1kag_A SKI, shikimate kinase I 89.8 0.13 4.5E-06 50.7 2.5 23 8-30 5-27 (173)
417 3a00_A Guanylate kinase, GMP k 89.8 0.13 4.5E-06 52.0 2.5 23 9-31 3-25 (186)
418 1z6g_A Guanylate kinase; struc 89.7 0.13 4.5E-06 53.6 2.5 23 9-31 25-47 (218)
419 3asz_A Uridine kinase; cytidin 89.7 0.13 4.3E-06 52.8 2.3 22 9-30 8-29 (211)
420 4a74_A DNA repair and recombin 89.7 0.16 5.6E-06 52.3 3.2 31 9-39 27-57 (231)
421 3tif_A Uncharacterized ABC tra 89.7 0.15 5E-06 54.1 2.8 23 9-31 33-55 (235)
422 2rcn_A Probable GTPase ENGC; Y 89.5 0.3 1E-05 55.3 5.3 23 85-107 217-239 (358)
423 3p32_A Probable GTPase RV1496/ 89.4 0.13 4.6E-06 57.8 2.4 24 7-30 79-102 (355)
424 2j41_A Guanylate kinase; GMP, 89.4 0.15 5.1E-06 51.8 2.5 23 9-31 8-30 (207)
425 2pcj_A ABC transporter, lipopr 89.4 0.15 5.1E-06 53.7 2.6 23 9-31 32-54 (224)
426 2cbz_A Multidrug resistance-as 89.4 0.16 5.5E-06 53.9 2.8 23 9-31 33-55 (237)
427 1mv5_A LMRA, multidrug resista 89.2 0.17 5.7E-06 53.9 2.8 23 9-31 30-52 (243)
428 2p67_A LAO/AO transport system 89.1 0.14 4.6E-06 57.4 2.2 26 6-31 55-80 (341)
429 1sgw_A Putative ABC transporte 89.1 0.17 6E-06 52.9 2.8 23 9-31 37-59 (214)
430 3ney_A 55 kDa erythrocyte memb 89.0 0.16 5.6E-06 52.6 2.5 25 6-30 18-42 (197)
431 3lw7_A Adenylate kinase relate 88.9 0.2 6.7E-06 48.9 3.0 20 8-27 2-21 (179)
432 4gp7_A Metallophosphoesterase; 88.9 0.18 6.2E-06 50.3 2.7 21 9-29 11-31 (171)
433 2onk_A Molybdate/tungstate ABC 88.8 0.18 6.2E-06 53.7 2.8 23 9-31 26-48 (240)
434 2gza_A Type IV secretion syste 88.8 0.18 6.2E-06 57.0 2.9 29 9-39 177-205 (361)
435 2pze_A Cystic fibrosis transme 88.8 0.18 6.3E-06 53.1 2.8 23 9-31 36-58 (229)
436 4eun_A Thermoresistant glucoki 88.8 0.17 5.9E-06 51.7 2.5 22 9-30 31-52 (200)
437 1xjc_A MOBB protein homolog; s 88.8 0.2 6.8E-06 50.7 2.9 24 6-29 3-26 (169)
438 2v9p_A Replication protein E1; 88.6 0.18 6E-06 55.9 2.6 23 9-31 128-150 (305)
439 2ff7_A Alpha-hemolysin translo 88.6 0.19 6.6E-06 53.7 2.8 23 9-31 37-59 (247)
440 1ji0_A ABC transporter; ATP bi 88.5 0.2 6.7E-06 53.3 2.8 23 9-31 34-56 (240)
441 2qi9_C Vitamin B12 import ATP- 88.5 0.2 6.8E-06 53.7 2.8 23 9-31 28-50 (249)
442 1g6h_A High-affinity branched- 88.5 0.2 6.8E-06 53.8 2.8 23 9-31 35-57 (257)
443 1b0u_A Histidine permease; ABC 88.5 0.2 6.8E-06 54.1 2.8 23 9-31 34-56 (262)
444 4g1u_C Hemin import ATP-bindin 88.4 0.2 6.8E-06 54.2 2.8 23 9-31 39-61 (266)
445 2bbw_A Adenylate kinase 4, AK4 88.4 0.2 6.9E-06 52.9 2.8 25 8-32 28-55 (246)
446 1g7s_A Translation initiation 88.4 0.16 5.4E-06 61.4 2.2 27 6-32 4-30 (594)
447 3sjy_A Translation initiation 88.3 0.23 7.8E-06 56.9 3.3 27 6-32 7-33 (403)
448 3gfo_A Cobalt import ATP-bindi 88.2 0.21 7.1E-06 54.4 2.8 23 9-31 36-58 (275)
449 3kb2_A SPBC2 prophage-derived 88.2 0.23 8E-06 48.6 3.0 22 8-29 2-23 (173)
450 2ghi_A Transport protein; mult 88.1 0.22 7.7E-06 53.6 2.9 23 9-31 48-70 (260)
451 2bdt_A BH3686; alpha-beta prot 88.1 0.21 7E-06 50.3 2.5 21 9-29 4-24 (189)
452 1knq_A Gluconate kinase; ALFA/ 88.1 0.21 7.1E-06 49.6 2.5 23 8-30 9-31 (175)
453 2olj_A Amino acid ABC transpor 88.1 0.22 7.4E-06 53.9 2.8 23 9-31 52-74 (263)
454 2d2e_A SUFC protein; ABC-ATPas 88.1 0.22 7.5E-06 53.3 2.8 30 9-38 31-60 (250)
455 1cke_A CK, MSSA, protein (cyti 88.0 0.22 7.5E-06 51.5 2.8 23 8-30 6-28 (227)
456 2nq2_C Hypothetical ABC transp 88.0 0.22 7.4E-06 53.5 2.8 30 9-40 33-62 (253)
457 2ixe_A Antigen peptide transpo 88.0 0.22 7.5E-06 54.0 2.8 23 9-31 47-69 (271)
458 1vpl_A ABC transporter, ATP-bi 88.0 0.22 7.6E-06 53.6 2.8 23 9-31 43-65 (256)
459 3qq5_A Small GTP-binding prote 88.0 0.13 4.6E-06 59.4 1.2 28 7-34 34-61 (423)
460 3b85_A Phosphate starvation-in 87.9 0.19 6.6E-06 52.3 2.2 29 9-40 24-52 (208)
461 2eyu_A Twitching motility prot 87.8 0.21 7.1E-06 53.9 2.5 22 9-30 27-48 (261)
462 2yv5_A YJEQ protein; hydrolase 87.8 0.29 1E-05 53.8 3.7 20 9-28 167-186 (302)
463 2yz2_A Putative ABC transporte 87.7 0.23 8E-06 53.6 2.8 23 9-31 35-57 (266)
464 2zu0_C Probable ATP-dependent 87.7 0.24 8E-06 53.6 2.8 23 9-31 48-70 (267)
465 2yv5_A YJEQ protein; hydrolase 87.6 0.78 2.7E-05 50.4 7.0 84 350-459 80-164 (302)
466 2oap_1 GSPE-2, type II secreti 87.6 0.24 8.2E-06 58.7 3.0 30 9-40 262-291 (511)
467 3aez_A Pantothenate kinase; tr 87.4 0.24 8.1E-06 54.9 2.7 22 9-30 92-113 (312)
468 2ihy_A ABC transporter, ATP-bi 87.3 0.27 9.1E-06 53.6 3.0 23 9-31 49-71 (279)
469 2i3b_A HCR-ntpase, human cance 87.2 0.25 8.6E-06 50.6 2.5 23 9-31 3-25 (189)
470 2qor_A Guanylate kinase; phosp 86.9 0.28 9.6E-06 50.2 2.7 23 8-30 13-35 (204)
471 2pjz_A Hypothetical protein ST 86.9 0.28 9.6E-06 53.0 2.8 23 9-31 32-54 (263)
472 2if2_A Dephospho-COA kinase; a 86.8 0.25 8.5E-06 50.3 2.3 21 9-29 3-23 (204)
473 3kta_A Chromosome segregation 86.8 0.25 8.7E-06 49.2 2.3 22 9-30 28-49 (182)
474 3nh6_A ATP-binding cassette SU 86.5 0.25 8.6E-06 54.6 2.3 23 9-31 82-104 (306)
475 1ly1_A Polynucleotide kinase; 86.3 0.32 1.1E-05 48.0 2.7 21 9-29 4-24 (181)
476 3uie_A Adenylyl-sulfate kinase 86.3 0.3 1E-05 49.9 2.5 23 9-31 27-49 (200)
477 3lnc_A Guanylate kinase, GMP k 86.2 0.22 7.7E-06 52.0 1.6 22 9-30 29-51 (231)
478 4e22_A Cytidylate kinase; P-lo 86.1 0.3 1E-05 52.0 2.6 26 8-33 28-56 (252)
479 2pt7_A CAG-ALFA; ATPase, prote 86.1 0.31 1.1E-05 54.4 2.7 29 9-39 173-201 (330)
480 1jjv_A Dephospho-COA kinase; P 86.0 0.34 1.2E-05 49.4 2.8 21 9-29 4-24 (206)
481 3t61_A Gluconokinase; PSI-biol 85.9 0.33 1.1E-05 49.4 2.7 23 8-30 19-41 (202)
482 3tr5_A RF-3, peptide chain rel 85.9 0.27 9.1E-06 58.5 2.2 24 7-30 13-36 (528)
483 2v3c_C SRP54, signal recogniti 85.8 0.28 9.6E-06 56.9 2.3 123 314-461 183-308 (432)
484 2jeo_A Uridine-cytidine kinase 85.7 0.32 1.1E-05 51.4 2.5 22 9-30 27-48 (245)
485 2bbs_A Cystic fibrosis transme 85.7 0.33 1.1E-05 53.3 2.6 23 9-31 66-88 (290)
486 2qt1_A Nicotinamide riboside k 85.6 0.34 1.2E-05 49.5 2.6 22 9-30 23-44 (207)
487 3q5d_A Atlastin-1; G protein, 85.4 0.39 1.3E-05 55.8 3.2 25 82-106 66-90 (447)
488 1htw_A HI0065; nucleotide-bind 85.4 0.37 1.3E-05 47.9 2.7 23 9-31 35-57 (158)
489 2jaq_A Deoxyguanosine kinase; 85.3 0.41 1.4E-05 48.2 3.0 21 9-29 2-22 (205)
490 1y63_A LMAJ004144AAA protein; 85.3 0.42 1.4E-05 48.1 3.0 22 8-29 11-32 (184)
491 1cip_A Protein (guanine nucleo 85.1 0.94 3.2E-05 51.0 6.1 39 240-291 192-230 (353)
492 3jvv_A Twitching mobility prot 85.1 0.35 1.2E-05 54.6 2.5 22 9-30 125-146 (356)
493 1nij_A Hypothetical protein YJ 85.1 0.28 9.6E-06 54.3 1.7 26 6-31 3-28 (318)
494 2d2e_A SUFC protein; ABC-ATPas 84.8 0.33 1.1E-05 51.9 2.1 31 85-115 31-61 (250)
495 1nks_A Adenylate kinase; therm 84.8 0.39 1.3E-05 47.8 2.5 22 8-29 2-23 (194)
496 2pcj_A ABC transporter, lipopr 84.7 0.35 1.2E-05 50.8 2.2 29 85-115 32-60 (224)
497 1rz3_A Hypothetical protein rb 84.7 0.37 1.3E-05 49.3 2.3 22 9-30 24-45 (201)
498 1mv5_A LMRA, multidrug resista 84.6 0.45 1.5E-05 50.5 3.0 30 85-116 30-59 (243)
499 3tif_A Uncharacterized ABC tra 84.5 0.39 1.3E-05 50.8 2.5 28 85-114 33-60 (235)
500 1sq5_A Pantothenate kinase; P- 84.5 0.36 1.2E-05 53.1 2.3 22 9-30 82-103 (308)
No 1
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=100.00 E-value=1.1e-91 Score=857.06 Aligned_cols=528 Identities=45% Similarity=0.743 Sum_probs=443.5
Q ss_pred hhhhhhhHHHHHHHHHhhhhcCC-CCCCCCceEEeCcCCCChhhHHhhhcCCCcCcccccccccCceEEEEeeCCCCchh
Q psy5059 56 DREKRTAAAVINKLQDVFNTVGT-DAIQLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDRE 134 (1036)
Q Consensus 56 ~~~~~~~~~l~~kL~~~~~~~g~-~~i~lPqIvVvG~QSsGKSSlLEal~G~~flPrg~G~cTR~Pl~l~l~~~~~~~~~ 134 (1036)
...++.+++++|+|+|.+.++|. ..+++|+|+|+|+||+|||||||+|+|.+|||||.|+|||||+++++.+.+.
T Consensus 23 ~~~~~~li~~inkl~d~l~~lg~~~~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~---- 98 (772)
T 3zvr_A 23 NRGMEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTT---- 98 (772)
T ss_dssp --CGGGHHHHHHHHHHHHHTTTCCGGGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSS----
T ss_pred cccHHHHHHHHHHHHHHHHhcCccccCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCc----
Confidence 34578999999999999999996 6799999999999999999999999999999999999999999999998542
Q ss_pred hhhhccCCCCccccccccccccccccchhhhhhhhhHHHHHhhccCCCcccccccccccccccCCcccCChhHHHHHHHH
Q psy5059 135 KRTAAAGTMDLDAWGQFLHTKDKVFRDFDDIRREIEDETERLAGKNKGICTMDLDAWGQFLHTKDKVFRDFDDIRREIED 214 (1036)
Q Consensus 135 ~~~~~~~~~~~~~w~~~~~~~~~~~~df~~~r~ei~~e~~r~~~~~~~i~~~~~~~~~~f~~~~~~~~~~~~~I~~~I~~ 214 (1036)
+|++|+|.++ ..+.++++++.+|+.
T Consensus 99 ------------~~~~~l~~~~-------------------------------------------~~~~~~~~v~~~I~~ 123 (772)
T 3zvr_A 99 ------------EYAEFLHCKG-------------------------------------------KKFTDFEEVRLEIEA 123 (772)
T ss_dssp ------------CEEECSTTTT-------------------------------------------CCBCCHHHHHHHHHH
T ss_pred ------------chhheeccCC-------------------------------------------cccCCHHHHHHHHHH
Confidence 4666655444 344556666777777
Q ss_pred HHHHhcCCCCCcCCCcEEEEEeecCcccceeecCCCccccCCCCCchhHHHHHHHHHHHhhcCCCcEEEEEecccccccc
Q psy5059 215 ETERLAGKNKGICSEPIILKIYSTSVLNLTLVDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMAT 294 (1036)
Q Consensus 215 ~~~~~~g~~~~~S~d~I~L~I~~P~~~~LtlVDLPGi~~~~~~~q~~di~~~ir~lv~~yI~~~n~IIL~V~~An~D~~~ 294 (1036)
.+..+.|.+++||.++|.++|++|++++++||||||+.+.+.++||.++...+++++.+|+.++.++||+|++|+.++.+
T Consensus 124 ~~~~~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~ 203 (772)
T 3zvr_A 124 ETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLAN 203 (772)
T ss_dssp HHHHHHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSS
T ss_pred HHhhhcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcch
Confidence 77788888999999999999999999999999999999999999999988889999999998888888888888877766
Q ss_pred chhhhhhhhcCCCCCcccceeccCCCCcccccCCCCCchHHHHHHHHHHhhhcCCCceEEEEEecCccccchHHHHHhhh
Q psy5059 295 SESLKLAKETDVDGRRTLDLLDIDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKE 374 (1036)
Q Consensus 295 s~al~l~r~~Dp~g~RTigvl~~~~~g~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~v~~~~d~~~~~~~~la~~ 374 (1036)
++ .+.++++
T Consensus 204 ~d-----------------------------------------------------------------------~l~ll~~ 212 (772)
T 3zvr_A 204 SD-----------------------------------------------------------------------ALKIAKE 212 (772)
T ss_dssp CH-----------------------------------------------------------------------HHHHHHH
T ss_pred hH-----------------------------------------------------------------------HHHHHHH
Confidence 55 3468888
Q ss_pred ccccCCceEEEEecccccCCCchhhhhhcCcccccccccccccchHHHHHHHHHHhhccCCCcceeeeecccchhhhHHH
Q psy5059 375 TDVDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKLDVDGRRTYIEAQIKQLVLHYISNPNSIILAVVTANTDMATSES 454 (1036)
Q Consensus 375 ~d~~g~rti~VitK~Dl~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~v~~~i~~~~~ipla~ISA~td~~~qei 454 (1036)
+++.|.++|+|+||||++++++...+
T Consensus 213 L~~~g~pvIlVlNKiDlv~~~~~~~~------------------------------------------------------ 238 (772)
T 3zvr_A 213 VDPQGQRTIGVITKLDLMDEGTDARD------------------------------------------------------ 238 (772)
T ss_dssp HCTTCSSEEEEEECTTSSCTTCCSHH------------------------------------------------------
T ss_pred HHhcCCCEEEEEeCcccCCcchhhHH------------------------------------------------------
Confidence 88899999999999999987655432
Q ss_pred HHHhhhcCcCCCceeeeecccccccccchHHHHhcCcceeeeecEEEEEcCChhhhhhccCHHHHHHHHHHHhhcccccc
Q psy5059 455 LKLAKETDVDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKLGIIGVVNRSQQDIIDNKSIKDAIKDEAAFLQRKYPTL 534 (1036)
Q Consensus 455 l~la~~vd~~g~RtIgVlTK~Dlmd~gt~~~~il~g~~~~L~LG~~~V~NRs~~di~~~~s~~~al~~E~~fF~~~~~~l 534 (1036)
++.++..++++||+.|++.|+.+...-..+.+++..|..||.
T Consensus 239 --------------------------------il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e~~ffp------ 280 (772)
T 3zvr_A 239 --------------------------------VLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFL------ 280 (772)
T ss_dssp --------------------------------HHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHHHHHHH------
T ss_pred --------------------------------HHHHHhhhhhccCCceEEecccccccchhHHHHHHHHHHhcc------
Confidence 223344455567888888887765554456666666666652
Q ss_pred ccccChHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHhhhhccccchhHH
Q psy5059 535 ASRNGTLYLAKTLNRLLMHHIRDCLPDLKTRVNVMISQFQTLLNSYGEDVSDKSQTLLQIITKFASAYCSTVEENGIFKF 614 (1036)
Q Consensus 535 ~~~~G~~~L~~~L~~iL~~hIr~~LP~l~~~I~~~l~~~e~~L~~lG~~~~~~~~~L~~~~~~F~~~~~~~le~~~i~~~ 614 (1036)
T Consensus 281 -------------------------------------------------------------------------------- 280 (772)
T 3zvr_A 281 -------------------------------------------------------------------------------- 280 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhccChhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhccCCCCccchhchhhhhhhhhhHHhhhhcchhhhhhh
Q psy5059 615 IESKKNPALHERIVEVVTQLLRRRLPATNTMVENLLAIELAYINTKHPDFHKDAALVPSLIKSAEEDYQRRTLSEKEKRD 694 (1036)
Q Consensus 615 ~e~~r~p~L~~rI~evv~~lL~~~~~~~~~~i~~li~~E~~yint~hpdf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1036)
T Consensus 281 -------------------------------------------------------------------------------- 280 (772)
T 3zvr_A 281 -------------------------------------------------------------------------------- 280 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccchHHhhhcCHHHHHhhhhhhccCCcchhh
Q psy5059 695 CDVIERLIKSYFYIIRKSIQDTVPKAIMHFLVNYVKDNLQSELVTHLYKADSASELLNESEWVAQRRKEASDTKYPTLAS 774 (1036)
Q Consensus 695 ~~~i~~~~~sYf~iv~k~~~d~vPk~i~~~lv~~~~~~l~~~l~~~l~~~~~~~~ll~E~~~ia~rR~~~~~~~y~~~~~ 774 (1036)
.+|.|..+.+
T Consensus 281 ----------------------------------------------------------------------e~P~yd~ltD 290 (772)
T 3zvr_A 281 ----------------------------------------------------------------------SHPSYRHLAD 290 (772)
T ss_dssp ----------------------------------------------------------------------HCTTTGGGGG
T ss_pred ----------------------------------------------------------------------CCcchhhhhh
Confidence 2456778889
Q ss_pred ccchHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhhcC----CCCcchHHHHHHHHHHHHHhhcccccccccc
Q psy5059 775 RNGTLYLAKTLNRLLMHHIRDCLPDLKTRVNVMISQFQTLLNSYG----EDVSDKSQTLLQIITKFASAYCSTVEGTARN 850 (1036)
Q Consensus 775 r~G~~~L~~~Ln~~L~~hi~~~LP~l~~~i~~~l~~~~~~l~~~~----d~~~~~~~~lL~~i~~F~~~f~~~I~G~~~~ 850 (1036)
|+|+..|.+.|+++|.+||++.||.|+++|+.++++++.+++.|| +++.+++.+|++++++|++.|+++|+|++.+
T Consensus 291 r~g~~~LaEiLrEkL~~hi~~ELP~l~~~I~~~l~s~~vele~~~~~~~~~~~~~~~~ll~~~~~f~~~~~~~i~G~~~~ 370 (772)
T 3zvr_A 291 RMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVDEYKNFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQ 370 (772)
T ss_dssp GCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSHHHHHHHHHHHHHHHHHHHTC----
T ss_pred cccHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 999999999999999999999999999999999999999999985 5567789999999999999999999999999
Q ss_pred ccccccccceeehhhhhhhhhhhccccCCCCCCCHHHHHHHHHhccCCCCCCCCChhHHHHHHHHHHHHhhccHHHHHHH
Q psy5059 851 IETTELCGGARICYIFHEIFGKVLDGINPLDGLTKMDILTAIRNATGPRPALFVPEVSFELLVKRQIRRLEEPSQRCVEL 930 (1036)
Q Consensus 851 ~~~~el~GGAri~~iF~~~F~~~i~~~~p~~~l~~~dIr~aI~n~~G~~~~lfvp~~aFe~Lvk~qI~~l~~Psl~cvdl 930 (1036)
+++++|+|||||+||||+.|++.+.+++|+++++++|||++|+|++|+++++|+|+.|||.|||+||++|++||++|||+
T Consensus 371 ~~~~el~ggari~~if~~~f~~~~~~~~~~~~~~~~~I~~~i~n~~G~~~~lf~p~~~fe~LVk~QI~rl~ePsl~CVdl 450 (772)
T 3zvr_A 371 IDTYELSGGARINRIFHERFPFELVKMEFDEKELRREISYAIKNIHDIRTGLFTPDLAFEATVKKQVQKLKEPSIKCVDM 450 (772)
T ss_dssp -----CCHHHHHHHHHHTHHHHHHHTTSCCHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred cCcccCCCCeeeehhHHHHhHHHHhcCCCchhhhHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCC-------------------------------------C-----C-------------------
Q psy5059 931 VHEEMQRIIQHCEKEGN-------------------------------------I-----P------------------- 949 (1036)
Q Consensus 931 V~~EL~~i~~~~~~~~~-------------------------------------~-----p------------------- 949 (1036)
|++||.+++++|..+.. | |
T Consensus 451 V~~eL~~iv~~~~~~l~RfP~Lr~ei~~iv~~~Lre~~~~t~~~V~~LId~E~ayintnHpdf~~~~~~~~~~~~~~~~~ 530 (772)
T 3zvr_A 451 VVSELTSTIRKCSEKLQQYPRLREEMERIVTTHIREREGRTKEQVMLLIDIELAYMNTNHEDFIGFANAQQRSNQMNKKK 530 (772)
T ss_dssp HHHHHHHHHHHHGGGGTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCTTCTTCCCC--------------
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhhchHHHHHHHHHHhhcc
Confidence 99999999999976532 0 0
Q ss_pred ----C---------------------------------------------------------------------------
Q psy5059 950 ----A--------------------------------------------------------------------------- 950 (1036)
Q Consensus 950 ----~--------------------------------------------------------------------------- 950 (1036)
+
T Consensus 531 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (772)
T 3zvr_A 531 TSGNQDEILVIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLKLRDVEKGFMSSKHIFALFN 610 (772)
T ss_dssp -------CCEEEEEEEEESSSCCC---CCEEEEEEESSEEEEESSTTCCCEEEEEECTTEEEEEC-------CEEEEEEE
T ss_pred cccCCccccceeeeeeeecccccccCCCccceeeccccccccccchhhhcccccccccccccchhhhccccccccccccC
Confidence 0
Q ss_pred -----------------------------------CC---C----------------CCCCCHHHHHHHHHHHHHHHHHH
Q psy5059 951 -----------------------------------TT---S----------------SRTLSEKEKRDCDVIERLIKSYF 976 (1036)
Q Consensus 951 -----------------------------------~~---~----------------~~~~~~~e~~q~~~i~~lv~sYf 976 (1036)
.| . ..+++||+++|+++|++||+|||
T Consensus 611 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~q~e~~~~l~~sy~ 690 (772)
T 3zvr_A 611 TEQRNVYKDYRQLELACETQEEVDSWKASFLRAGVYPERVGDKEKASETEENGSDSFMHSMDPQLERQVETIRNLVDSYM 690 (772)
T ss_dssp TTSSCSBTTBSEEEEEESSHHHHHHHHHHHHHTTCCBC------------------------CHHHHHHHHHHHHHHHHH
T ss_pred CccccccchhhhhhhhccccccchhhHHhhhhcccCCccccccccccccCCccccccccCCCHHHHHHHHHHHHHHHHHH
Confidence 00 0 00268999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHhcCCHHHHHHhhhhc
Q psy5059 977 YIIRKSIQDTVPKAIMHFLVNYVKDNLQSELVTHLYKADSASELLNESEWVAQRRKEST 1035 (1036)
Q Consensus 977 ~Iv~k~i~D~VPK~Im~~lVn~~~~~l~~~L~~~Ly~~~~~~~Ll~E~~~i~~~R~~~~ 1035 (1036)
+||+|+++|+|||+|||||||++|++|++||+++||+++++++||+|||++++||++|.
T Consensus 691 ~iv~k~~~d~~pk~im~~~vn~~k~~~~~el~~~ly~~~~~~~lm~Es~~~~~~r~~~~ 749 (772)
T 3zvr_A 691 AIVNKTVRDLMPKTIMHLMINNTKEFIFSELLANLYSCGDQNTLMEESAEQAQRRDEML 749 (772)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHTHHHHHHHTCCTTTTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHhcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999985
No 2
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=100.00 E-value=4e-76 Score=715.11 Aligned_cols=539 Identities=30% Similarity=0.436 Sum_probs=417.6
Q ss_pred cEEEeeccCCC-chhhhhhhHHHHHHHHHhhhhcCC-CCCCCCceEEeCcCCCChhhHHhhhcCCCcCcccccccccCce
Q psy5059 44 PLILQLYYCPK-DDREKRTAAAVINKLQDVFNTVGT-DAIQLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPL 121 (1036)
Q Consensus 44 pl~l~l~~~~~-~~~~~~~~~~l~~kL~~~~~~~g~-~~i~lPqIvVvG~QSsGKSSlLEal~G~~flPrg~G~cTR~Pl 121 (1036)
|..+.++++.. .....+.+++++|+|++ +|. ..+++|+|+|||+|||||||||++|+|. +.|+++|.||++|.
T Consensus 8 ~~~i~~~~l~~~~~~~~r~ll~~id~l~~----~gv~~~l~lp~iaIvG~nGsGKSTLL~~I~Gl-~~P~~sG~vt~~g~ 82 (608)
T 3szr_A 8 PGSVAENNLCSQYEEKVRPCIDLIDSLRA----LGVEQDLALPAIAVIGDQSSGKSSVLEALSGV-ALPRGSGIVTRCPL 82 (608)
T ss_dssp ------------CHHHHHHHHHHHHHHHH----HSCCSSCCCCCEECCCCTTSCHHHHHHHHHSC-C-------CCCSCE
T ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHh----CCCCCcccCCeEEEECCCCChHHHHHHHHhCC-CCCCCCCeEEEcCE
Confidence 44456666554 34556788888888886 564 6799999999999999999999999999 47999999999999
Q ss_pred EEEEeeCCCCchhhhhhccCCCCccccccccccccccccchhhhhhhhhHHHHHhhccCCCcccccccccccccccCCcc
Q psy5059 122 ILQLYYCPKDDREKRTAAAGTMDLDAWGQFLHTKDKVFRDFDDIRREIEDETERLAGKNKGICTMDLDAWGQFLHTKDKV 201 (1036)
Q Consensus 122 ~l~l~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~df~~~r~ei~~e~~r~~~~~~~i~~~~~~~~~~f~~~~~~~ 201 (1036)
.+++.+.+... .|...++.. ..+..
T Consensus 83 ~i~~~~~~~~~--------------~~~~~i~~v-----------------------------------------~Q~~~ 107 (608)
T 3szr_A 83 VLKLKKLVNED--------------KWRGKVSYQ-----------------------------------------DYEIE 107 (608)
T ss_dssp EEEEEECSSSS--------------CCEEEESCC--------------------------------------------CC
T ss_pred EEEEecCCccc--------------cceeEEeee-----------------------------------------ccccc
Confidence 99887754221 232221100 00122
Q ss_pred cCChhHHHHHHHHHHHHhcCCCCCcCCCcEEEEEeecCcccceeecCCCccccCCCCCchhHHHHHHHHHHHhhcCCCcE
Q psy5059 202 FRDFDDIRREIEDETERLAGKNKGICSEPIILKIYSTSVLNLTLVDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSI 281 (1036)
Q Consensus 202 ~~~~~~I~~~I~~~~~~~~g~~~~~S~d~I~L~I~~P~~~~LtlVDLPGi~~~~~~~q~~di~~~ir~lv~~yI~~~n~I 281 (1036)
+.++..+.+.|......+.+.+.+++++.+.+.+.+|+.|+|+|+|+||+.+.++++++.+...++++|+.+|+.++++|
T Consensus 108 l~~~~tv~e~i~~~~~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~i 187 (608)
T 3szr_A 108 ISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETI 187 (608)
T ss_dssp CCCHHHHHTTHHHHHHHHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCC
T ss_pred CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCC
Confidence 34556677777777777778888999999999999999999999999999999999999899999999999999999999
Q ss_pred EEEEeccccccccchhhhhhhhcCCCCCcccceeccCCCCcccccCCCCCchHHHHHHHHHHhhhcCCCceEEEEEecCc
Q psy5059 282 ILAVVTANTDMATSESLKLAKETDVDGRRTLDLLDIDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANT 361 (1036)
Q Consensus 282 IL~V~~An~D~~~s~al~l~r~~Dp~g~RTigvl~~~~~g~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~v~~~~ 361 (1036)
+|++++++.|+++++
T Consensus 188 il~vvt~~~d~a~~~----------------------------------------------------------------- 202 (608)
T 3szr_A 188 SLVVVPSNVDIATTE----------------------------------------------------------------- 202 (608)
T ss_dssp EEEEEESSSCTTTCH-----------------------------------------------------------------
T ss_pred ceEEEeccchhccHH-----------------------------------------------------------------
Confidence 999999888877755
Q ss_pred cccchHHHHHhhhccccCCceEEEEecccccCCCchhhhhhcCcccccccccccccchHHHHHHHHHHhhccCCCcceee
Q psy5059 362 DMATSESLKLAKETDVDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKLDVDGRRTYIEAQIKQLVLHYISNPNSIILA 441 (1036)
Q Consensus 362 d~~~~~~~~la~~~d~~g~rti~VitK~Dl~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~v~~~i~~~~~ipla 441 (1036)
++++|+++|+.|.|||||+||+|++++|+...
T Consensus 203 ------~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~------------------------------------------ 234 (608)
T 3szr_A 203 ------ALSMAQEVDPEGDRTIGILTKPDLVDKGTEDK------------------------------------------ 234 (608)
T ss_dssp ------HHHHHHHHCSSCCSEEEEEECGGGSSSSSTTC------------------------------------------
T ss_pred ------HHHHHHHHhhcCCceEEEecchhhcCcccHHH------------------------------------------
Confidence 56677777888888888999999998876531
Q ss_pred eecccchhhhHHHHHHhhhcCcCCCceeeeecccccccccchHHHHhcCcceeeeecEEEEEcCChhhhhhccCHHHHHH
Q psy5059 442 VVTANTDMATSESLKLAKETDVDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKLGIIGVVNRSQQDIIDNKSIKDAIK 521 (1036)
Q Consensus 442 ~ISA~td~~~qeil~la~~vd~~g~RtIgVlTK~Dlmd~gt~~~~il~g~~~~L~LG~~~V~NRs~~di~~~~s~~~al~ 521 (1036)
+.+++.|+.+++++||++|+||+++|+..+.++.++++
T Consensus 235 ------------------------------------------~~~~l~~~~~~l~~g~~~v~nr~~~~~~~~~~~~~~~~ 272 (608)
T 3szr_A 235 ------------------------------------------VVDVVRNLVFHLKKGYMIVKCRGQQEIQDQLSLSEALQ 272 (608)
T ss_dssp ------------------------------------------CCCCC--CCSCCSSCEECCCCSCTTCTTTCCCHHHHTT
T ss_pred ------------------------------------------HHHHHhCcccccCceEEEEecCchhhcccCCCHHHHHH
Confidence 34556778888888999999999999999999999999
Q ss_pred HHHHHhhccccccccccChHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHH
Q psy5059 522 DEAAFLQRKYPTLASRNGTLYLAKTLNRLLMHHIRDCLPDLKTRVNVMISQFQTLLNSYGEDVSDKSQTLLQIITKFASA 601 (1036)
Q Consensus 522 ~E~~fF~~~~~~l~~~~G~~~L~~~L~~iL~~hIr~~LP~l~~~I~~~l~~~e~~L~~lG~~~~~~~~~L~~~~~~F~~~ 601 (1036)
.|..||.++
T Consensus 273 ~E~~fF~~~----------------------------------------------------------------------- 281 (608)
T 3szr_A 273 REKIFFENH----------------------------------------------------------------------- 281 (608)
T ss_dssp THHHHTTTC-----------------------------------------------------------------------
T ss_pred HHHHHHccC-----------------------------------------------------------------------
Confidence 999998642
Q ss_pred hhhhccccchhHHHhhccChhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhccCCCCccchhchhhhhhhhhhHH
Q psy5059 602 YCSTVEENGIFKFIESKKNPALHERIVEVVTQLLRRRLPATNTMVENLLAIELAYINTKHPDFHKDAALVPSLIKSAEED 681 (1036)
Q Consensus 602 ~~~~le~~~i~~~~e~~r~p~L~~rI~evv~~lL~~~~~~~~~~i~~li~~E~~yint~hpdf~~~~~~~~~~~~~~~~~ 681 (1036)
T Consensus 282 -------------------------------------------------------------------------------- 281 (608)
T 3szr_A 282 -------------------------------------------------------------------------------- 281 (608)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccchHHhhhcCHHHHHhh
Q psy5059 682 YQRRTLSEKEKRDCDVIERLIKSYFYIIRKSIQDTVPKAIMHFLVNYVKDNLQSELVTHLYKADSASELLNESEWVAQRR 761 (1036)
Q Consensus 682 ~~~~~~~~~~~~~~~~i~~~~~sYf~iv~k~~~d~vPk~i~~~lv~~~~~~l~~~l~~~l~~~~~~~~ll~E~~~ia~rR 761 (1036)
T Consensus 282 -------------------------------------------------------------------------------- 281 (608)
T 3szr_A 282 -------------------------------------------------------------------------------- 281 (608)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhccCCcchhh--ccchHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhhcCCCC----cchHHHHHHHHHH
Q psy5059 762 KEASDTKYPTLAS--RNGTLYLAKTLNRLLMHHIRDCLPDLKTRVNVMISQFQTLLNSYGEDV----SDKSQTLLQIITK 835 (1036)
Q Consensus 762 ~~~~~~~y~~~~~--r~G~~~L~~~Ln~~L~~hi~~~LP~l~~~i~~~l~~~~~~l~~~~d~~----~~~~~~lL~~i~~ 835 (1036)
|.|+++++ ||||++|+++||++|++||+++||.|+++|+.+|++++++|+.||+++ +++..+|++++++
T Consensus 282 -----~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~el~~lg~~~~~~~~~~~~~l~~~~~~ 356 (608)
T 3szr_A 282 -----PYFRDLLEEGKATVPCLAEKLTSELITHICKSLPLLENQIKETHQRITEELQKYGVDIPEDENEKMFFLIDKVNA 356 (608)
T ss_dssp -----TTTSGGGGTCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCCSHHHHHHHHHHHHHH
T ss_pred -----ccccccCccccccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHH
Confidence 23444544 899999999999999999999999999999999999999999999865 3567889999999
Q ss_pred HHHhhccccccccccccccccccceeehhhhhhhhhhhccccCCCCCCCHHHHHHHHHhccCCCCCCCCChhHHHHHHHH
Q psy5059 836 FASAYCSTVEGTARNIETTELCGGARICYIFHEIFGKVLDGINPLDGLTKMDILTAIRNATGPRPALFVPEVSFELLVKR 915 (1036)
Q Consensus 836 F~~~f~~~I~G~~~~~~~~el~GGAri~~iF~~~F~~~i~~~~p~~~l~~~dIr~aI~n~~G~~~~lfvp~~aFe~Lvk~ 915 (1036)
|++.|++.|+|... ..+.++.++++|+++|+++....-...+++....++||+++++|++|++.|+|+|+.|||.|||+
T Consensus 357 f~~~~~~~~~g~~~-~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~f~~~~~fe~lvk~ 435 (608)
T 3szr_A 357 FNQDITALMQGEET-VGEEDIRLFTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFENQAAAAELPGFVNYRTFETIVKQ 435 (608)
T ss_dssp HHHHHHHHHSSCCC-CCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCSSSCSSCTHHHHHHHHH
T ss_pred HHHHHHHHhCCCCc-CCCccccHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHccCCCCCCCccHHHHHHHHHH
Confidence 99999999999764 45667888899999998765433333334555668999999999999999999999999999999
Q ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHHhccC--CCCCC----------------------------------CCCCCCCH
Q psy5059 916 QIRRLEEPSQRCVELVHEEMQRIIQHCEKEG--NIPAT----------------------------------TSSRTLSE 959 (1036)
Q Consensus 916 qI~~l~~Psl~cvdlV~~EL~~i~~~~~~~~--~~p~~----------------------------------~~~~~~~~ 959 (1036)
||++|++|+++||+.|++++.+++.+|..+. .||.. ..+..++.
T Consensus 436 qi~~l~~Pa~~~v~~V~~~v~~~~~~~~~~~f~rfp~L~~~~~~~i~~~~~~~~~~a~~~i~~li~mE~~~~~~d~~~~~ 515 (608)
T 3szr_A 436 QIKALEEPAVDMLHTVTDMVRLAFTDVSIKNFEEFFNLHRTAKSKIEDIRAEQEREGEKLIRLHFQMEQIVYGAFQSSSA 515 (608)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccC
Confidence 9999999999999999999999998755321 13310 00111110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHhcCCHHHHHHhhhhc
Q psy5059 960 KEKRDCDVIERLIKSYFYIIRKSIQDTVPKAIMHFLVNYVKDNLQSELVTHLYKADSASELLNESEWVAQRRKEST 1035 (1036)
Q Consensus 960 ~e~~q~~~i~~lv~sYf~Iv~k~i~D~VPK~Im~~lVn~~~~~l~~~L~~~Ly~~~~~~~Ll~E~~~i~~~R~~~~ 1035 (1036)
.......|+.+++|||+||+|+++|+|||+|||||||.+++.||++|++.||+.+.+++||+|+|++++||++|+
T Consensus 516 -~~~~~~ei~~~l~sY~~iv~~~~~D~vP~~I~~~lv~~~~~~lq~~l~~~l~~~~~~~~ll~E~~~~~~~R~~l~ 590 (608)
T 3szr_A 516 -TDSSMEEIFQHLMAYHQEASKRISSHIPLIIQFFMLQTYGQQLQKAMLQLLQDKDTYSWLLKERSDTSDKRKFLK 590 (608)
T ss_dssp ----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTTTTCHHHHHHHTCCCHHHHHHHHHHH
T ss_pred -CCccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHhCCCHHHHHHHHHHH
Confidence 111123399999999999999999999999999999999999999999999999999999999999999999985
No 3
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=100.00 E-value=4.3e-49 Score=481.85 Aligned_cols=236 Identities=35% Similarity=0.558 Sum_probs=193.7
Q ss_pred ccccccChHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHHHHHHHhhhhccc
Q psy5059 533 TLASRNGTLYLAKTLNRLLMHHIRDCLPDLKTRVNVMISQFQTLLNSYGEDVS----DKSQTLLQIITKFASAYCSTVEE 608 (1036)
Q Consensus 533 ~l~~~~G~~~L~~~L~~iL~~hIr~~LP~l~~~I~~~l~~~e~~L~~lG~~~~----~~~~~L~~~~~~F~~~~~~~le~ 608 (1036)
.+.++.|+..|++.|++.|..||+++||.++.+|+..+..++.+++++|++++ +...+|++++++|...++.+++|
T Consensus 287 ~ltDr~g~~~LaEiLrEkL~~hi~~ELP~l~~~I~~~l~s~~vele~~~~~~~~~~~~~~~~ll~~~~~f~~~~~~~i~G 366 (772)
T 3zvr_A 287 HLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVDEYKNFRPDDPARKTKALLQMVQQFAVDFEKRIEG 366 (772)
T ss_dssp GGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhhcccHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34568899999999999999999999999999999999999999999997654 23579999999999998888765
Q ss_pred cc----------------hhH-----------------------------------------H-----------------
Q psy5059 609 NG----------------IFK-----------------------------------------F----------------- 614 (1036)
Q Consensus 609 ~~----------------i~~-----------------------------------------~----------------- 614 (1036)
.+ +|+ |
T Consensus 367 ~~~~~~~~el~ggari~~if~~~f~~~~~~~~~~~~~~~~~I~~~i~n~~G~~~~lf~p~~~fe~LVk~QI~rl~ePsl~ 446 (772)
T 3zvr_A 367 SGDQIDTYELSGGARINRIFHERFPFELVKMEFDEKELRREISYAIKNIHDIRTGLFTPDLAFEATVKKQVQKLKEPSIK 446 (772)
T ss_dssp ---------CCHHHHHHHHHHTHHHHHHHTTSCCHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred CCCCcCcccCCCCeeeehhHHHHhHHHHhcCCCchhhhHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 32 110 0
Q ss_pred ---------------H--hhccChhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhccCCCCccchhchhhh----
Q psy5059 615 ---------------I--ESKKNPALHERIVEVVTQLLRRRLPATNTMVENLLAIELAYINTKHPDFHKDAALVPS---- 673 (1036)
Q Consensus 615 ---------------~--e~~r~p~L~~rI~evv~~lL~~~~~~~~~~i~~li~~E~~yint~hpdf~~~~~~~~~---- 673 (1036)
+ +..|||+|++++.+++.++|++++.+|++||.+||++|++|||||||||++++++.+.
T Consensus 447 CVdlV~~eL~~iv~~~~~~l~RfP~Lr~ei~~iv~~~Lre~~~~t~~~V~~LId~E~ayintnHpdf~~~~~~~~~~~~~ 526 (772)
T 3zvr_A 447 CVDMVVSELTSTIRKCSEKLQQYPRLREEMERIVTTHIREREGRTKEQVMLLIDIELAYMNTNHEDFIGFANAQQRSNQM 526 (772)
T ss_dssp HHHHHHHHHHHHHHHHGGGGTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCTTCTTCCCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhhchHHHHHHHHHH
Confidence 0 1258999999999999999999999999999999999999999999999998765410
Q ss_pred --------h-------------------------------------hhhh-------------------h----------
Q psy5059 674 --------L-------------------------------------IKSA-------------------E---------- 679 (1036)
Q Consensus 674 --------~-------------------------------------~~~~-------------------~---------- 679 (1036)
. ++.. +
T Consensus 527 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (772)
T 3zvr_A 527 NKKKTSGNQDEILVIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLKLRDVEKGFMSSKHIF 606 (772)
T ss_dssp -----------CCEEEEEEEEESSSCCC---CCEEEEEEESSEEEEESSTTCCCEEEEEECTTEEEEEC-------CEEE
T ss_pred hhcccccCCccccceeeeeeeecccccccCCCccceeeccccccccccchhhhcccccccccccccchhhhccccccccc
Confidence 0 0000 0
Q ss_pred --------H-------------------H----------hhhh--------c------------chhhhhhhHHHHHHHH
Q psy5059 680 --------E-------------------D----------YQRR--------T------------LSEKEKRDCDVIERLI 702 (1036)
Q Consensus 680 --------~-------------------~----------~~~~--------~------------~~~~~~~~~~~i~~~~ 702 (1036)
+ . |..+ . +++++.+++++|++||
T Consensus 607 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~q~e~~~~l~ 686 (772)
T 3zvr_A 607 ALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRAGVYPERVGDKEKASETEENGSDSFMHSMDPQLERQVETIRNLV 686 (772)
T ss_dssp EEEETTSSCSBTTBSEEEEEESSHHHHHHHHHHHHHTTCCBC------------------------CHHHHHHHHHHHHH
T ss_pred cccCCccccccchhhhhhhhccccccchhhHHhhhhcccCCccccccccccccCCccccccccCCCHHHHHHHHHHHHHH
Confidence 0 0 0000 0 2346667899999999
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccchHHhhhcCHHHHHhhhhhhccC
Q psy5059 703 KSYFYIIRKSIQDTVPKAIMHFLVNYVKDNLQSELVTHLYKADSASELLNESEWVAQRRKEASDTK 768 (1036)
Q Consensus 703 ~sYf~iv~k~~~d~vPk~i~~~lv~~~~~~l~~~l~~~l~~~~~~~~ll~E~~~ia~rR~~~~~~~ 768 (1036)
+|||+||+|+|+|+|||+|||||||++++.+|++|+.+||+.+.+.+||+|++++++||++|.+..
T Consensus 687 ~sy~~iv~k~~~d~~pk~im~~~vn~~k~~~~~el~~~ly~~~~~~~lm~Es~~~~~~r~~~~~~~ 752 (772)
T 3zvr_A 687 DSYMAIVNKTVRDLMPKTIMHLMINNTKEFIFSELLANLYSCGDQNTLMEESAEQAQRRDEMLRMY 752 (772)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTHHHHHHHTCCTTTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHhcCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999887653
No 4
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=100.00 E-value=5.5e-44 Score=407.68 Aligned_cols=315 Identities=46% Similarity=0.718 Sum_probs=262.8
Q ss_pred hhhhHHHHHHHHHhhhhcCCC---------CCCCCceEEeCcCCCChhhHHhhhcCCCcCcccccccccCceEEEEeeCC
Q psy5059 59 KRTAAAVINKLQDVFNTVGTD---------AIQLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCP 129 (1036)
Q Consensus 59 ~~~~~~l~~kL~~~~~~~g~~---------~i~lPqIvVvG~QSsGKSSlLEal~G~~flPrg~G~cTR~Pl~l~l~~~~ 129 (1036)
++.+++++|+|++++..+|.. .+++|+|+|||+||||||||||+|+|.+|+|+++|+|||+|+++++.+.+
T Consensus 1 ~~~l~~~~~~l~~~~~~~~~~~~~~~l~~i~~~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~ 80 (360)
T 3t34_A 1 MENLISLVNKIQRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKID 80 (360)
T ss_dssp -CCHHHHHHHTTTTTTSCSSCCSSCCC----CCCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECS
T ss_pred ChhHHHHHHHHHHHHHhhCccccccccccccccCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCC
Confidence 457899999999999988742 26899999999999999999999999999999999999999999998754
Q ss_pred CCchhhhhhccCCCCccccccccccccccccchhhhhhhhhHHHHHhhccCCCcccccccccccccccCCcccCChhHHH
Q psy5059 130 KDDREKRTAAAGTMDLDAWGQFLHTKDKVFRDFDDIRREIEDETERLAGKNKGICTMDLDAWGQFLHTKDKVFRDFDDIR 209 (1036)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~df~~~r~ei~~e~~r~~~~~~~i~~~~~~~~~~f~~~~~~~~~~~~~I~ 209 (1036)
... ..|+.| .+.++..+.+|..++
T Consensus 81 ~~~-------------~~~~~~-------------------------------------------~~~~~~~~~~~~~v~ 104 (360)
T 3t34_A 81 DGT-------------REYAEF-------------------------------------------LHLPRKKFTDFAAVR 104 (360)
T ss_dssp SCS-------------CCEEEE-------------------------------------------TTSTTCCBSCHHHHH
T ss_pred Ccc-------------cceeee-------------------------------------------ecCCCcccCCHHHHH
Confidence 321 134444 444455566677777
Q ss_pred HHHHHHHHHhcCCCCCcCCCcEEEEEeecCcccceeecCCCccccCCCCCchhHHHHHHHHHHHhhcCCCcEEEEEeccc
Q psy5059 210 REIEDETERLAGKNKGICSEPIILKIYSTSVLNLTLVDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTAN 289 (1036)
Q Consensus 210 ~~I~~~~~~~~g~~~~~S~d~I~L~I~~P~~~~LtlVDLPGi~~~~~~~q~~di~~~ir~lv~~yI~~~n~IIL~V~~An 289 (1036)
.++..++..+.|.+.+|+.+++.++|.+|+.++++||||||+.+.+..+|+.++..++++++..|+.++++|||++++++
T Consensus 105 ~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~ 184 (360)
T 3t34_A 105 KEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPAN 184 (360)
T ss_dssp HHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETT
T ss_pred HHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeeccc
Confidence 77777788888889999999999999999999999999999999988899999999999999999999999999999988
Q ss_pred cccccchhhhhhhhcCCCCCcccceeccCCCCcccccCCCCCchHHHHHHHHHHhhhcCCCceEEEEEecCccccchHHH
Q psy5059 290 TDMATSESLKLAKETDVDGRRTLDLLDIDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESL 369 (1036)
Q Consensus 290 ~D~~~s~al~l~r~~Dp~g~RTigvl~~~~~g~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~v~~~~d~~~~~~~ 369 (1036)
.|..+++ .+
T Consensus 185 ~~~~~~~-----------------------------------------------------------------------~~ 193 (360)
T 3t34_A 185 QDLATSD-----------------------------------------------------------------------AI 193 (360)
T ss_dssp SCGGGCH-----------------------------------------------------------------------HH
T ss_pred CCcCCHH-----------------------------------------------------------------------HH
Confidence 8877655 35
Q ss_pred HHhhhccccCCceEEEEecccccCCCchhhhhhcCcccccccccccccchHHHHHHHHHHhhccCCCcceeeeecccchh
Q psy5059 370 KLAKETDVDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKLDVDGRRTYIEAQIKQLVLHYISNPNSIILAVVTANTDM 449 (1036)
Q Consensus 370 ~la~~~d~~g~rti~VitK~Dl~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~v~~~i~~~~~ipla~ISA~td~ 449 (1036)
++++++++.|.+||+|+||+|++++++..
T Consensus 194 ~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~--------------------------------------------------- 222 (360)
T 3t34_A 194 KISREVDPSGDRTFGVLTKIDLMDKGTDA--------------------------------------------------- 222 (360)
T ss_dssp HHHHHSCTTCTTEEEEEECGGGCCTTCCS---------------------------------------------------
T ss_pred HHHHHhcccCCCEEEEEeCCccCCCcccH---------------------------------------------------
Confidence 56777777788888899999988765432
Q ss_pred hhHHHHHHhhhcCcCCCceeeeecccccccccchHHHHhcCcceeeeecEEEEEcCChhhhhhccCHHHHHHHHHHHhhc
Q psy5059 450 ATSESLKLAKETDVDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKLGIIGVVNRSQQDIIDNKSIKDAIKDEAAFLQR 529 (1036)
Q Consensus 450 ~~qeil~la~~vd~~g~RtIgVlTK~Dlmd~gt~~~~il~g~~~~L~LG~~~V~NRs~~di~~~~s~~~al~~E~~fF~~ 529 (1036)
.+++.+...++.+||+.|+|+++.++....+..++...|..||.+
T Consensus 223 -----------------------------------~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~~~~e~~ff~~ 267 (360)
T 3t34_A 223 -----------------------------------VEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAARKREREYFSN 267 (360)
T ss_dssp -----------------------------------HHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHHHHHHHHHHTT
T ss_pred -----------------------------------HHHHcCccccccCCeEEEEECChHHhccCCCHHHHHHHHHHHhcC
Confidence 345566667788999999999999999999999999999999987
Q ss_pred c--ccccccccChHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhcCCCCch
Q psy5059 530 K--YPTLASRNGTLYLAKTLNRLLMHHIRDCLPDLKTRVNVMISQFQTLLNSYGEDVSD 586 (1036)
Q Consensus 530 ~--~~~l~~~~G~~~L~~~L~~iL~~hIr~~LP~l~~~I~~~l~~~e~~L~~lG~~~~~ 586 (1036)
+ |..+.+++|+.+|+++|+++|.+||+++||.++.+|+..+.+++++|++||+++++
T Consensus 268 ~~~~~~~~~~~g~~~L~~~l~~~l~~~i~~~lp~l~~~i~~~l~~~~~~l~~lg~~~~~ 326 (360)
T 3t34_A 268 TTEYRHLANKMGSEHLAKMLSKHLERVIKSRIPGIQSLINKTVLELETELSRLGKPIAH 326 (360)
T ss_dssp CTTTGGGGGGCSHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHTTTTCC----------
T ss_pred CCccccchhhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 4 77778899999999999999999999999999999999999999999999999874
No 5
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=100.00 E-value=3.6e-42 Score=391.92 Aligned_cols=334 Identities=49% Similarity=0.798 Sum_probs=283.5
Q ss_pred hhhhhhhHHHHHHHHHhhhhcCC-CCCCCCceEEeCcCCCChhhHHhhhcCCCcCcccccccccCceEEEEeeCCCCchh
Q psy5059 56 DREKRTAAAVINKLQDVFNTVGT-DAIQLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDRE 134 (1036)
Q Consensus 56 ~~~~~~~~~l~~kL~~~~~~~g~-~~i~lPqIvVvG~QSsGKSSlLEal~G~~flPrg~G~cTR~Pl~l~l~~~~~~~~~ 134 (1036)
+..++.+++++|+|+|.+..+|. ..+++|+|+|+|+||+|||||||+|+|.+|+|++.|+|||+|+++++.+.+.
T Consensus 3 ~~~~~~l~~~~~~l~d~l~~~g~~~~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~---- 78 (353)
T 2x2e_A 3 EFSMEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATT---- 78 (353)
T ss_dssp ---CCSCHHHHHHHHHHHHTTTCGGGCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSS----
T ss_pred chhHHHHHHHHHHHHHHHHHcCCCCCCCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCc----
Confidence 34578899999999999999986 5789999999999999999999999999999999999999999999987532
Q ss_pred hhhhccCCCCccccccccccccccccchhhhhhhhhHHHHHhhccCCCcccccccccccccccCCcccCChhHHHHHHHH
Q psy5059 135 KRTAAAGTMDLDAWGQFLHTKDKVFRDFDDIRREIEDETERLAGKNKGICTMDLDAWGQFLHTKDKVFRDFDDIRREIED 214 (1036)
Q Consensus 135 ~~~~~~~~~~~~~w~~~~~~~~~~~~df~~~r~ei~~e~~r~~~~~~~i~~~~~~~~~~f~~~~~~~~~~~~~I~~~I~~ 214 (1036)
+|++|+|.+++.|.+ ++++..+|+.
T Consensus 79 ------------~~~~~~~~~~~~~tt-------------------------------------------~~~v~~~i~~ 103 (353)
T 2x2e_A 79 ------------EYAEFLHCKGKKFTD-------------------------------------------FEEVRLEIEA 103 (353)
T ss_dssp ------------CEEEETTSTTCCBCC-------------------------------------------HHHHHHHHHH
T ss_pred ------------cceeeeecCCcccCC-------------------------------------------HHHHHHHHHH
Confidence 577776665555444 4455555566
Q ss_pred HHHHhcCCCCCcCCCcEEEEEeecCcccceeecCCCccccCCCCCchhHHHHHHHHHHHhhcCCCcEEEEEecccccccc
Q psy5059 215 ETERLAGKNKGICSEPIILKIYSTSVLNLTLVDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMAT 294 (1036)
Q Consensus 215 ~~~~~~g~~~~~S~d~I~L~I~~P~~~~LtlVDLPGi~~~~~~~q~~di~~~ir~lv~~yI~~~n~IIL~V~~An~D~~~ 294 (1036)
++.++.|.+.+++.+++.+++++|+..+|+||||||+.+.+.++|+.++.+.+++|+..|+.+++++||+|++|+.|+.+
T Consensus 104 ~~~~i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~ 183 (353)
T 2x2e_A 104 ETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLAN 183 (353)
T ss_dssp HHHHHHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGG
T ss_pred HHHHhcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccch
Confidence 66677777889999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred chhhhhhhhcCCCCCcccceeccCCCCcccccCCCCCchHHHHHHHHHHhhhcCCCceEEEEEecCccccchHHHHHhhh
Q psy5059 295 SESLKLAKETDVDGRRTLDLLDIDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKE 374 (1036)
Q Consensus 295 s~al~l~r~~Dp~g~RTigvl~~~~~g~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~v~~~~d~~~~~~~~la~~ 374 (1036)
++ .++++++
T Consensus 184 ~~-----------------------------------------------------------------------~~~i~~~ 192 (353)
T 2x2e_A 184 SD-----------------------------------------------------------------------ALKVAKE 192 (353)
T ss_dssp CH-----------------------------------------------------------------------HHHHHHH
T ss_pred hH-----------------------------------------------------------------------HHHHHHH
Confidence 65 2347777
Q ss_pred ccccCCceEEEEecccccCCCchhhhhhcCcccccccccccccchHHHHHHHHHHhhccCCCcceeeeecccchhhhHHH
Q psy5059 375 TDVDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKLDVDGRRTYIEAQIKQLVLHYISNPNSIILAVVTANTDMATSES 454 (1036)
Q Consensus 375 ~d~~g~rti~VitK~Dl~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~v~~~i~~~~~ipla~ISA~td~~~qei 454 (1036)
+++.|.|+|+|+||+|+++++++.
T Consensus 193 ~~~~~~~~i~V~NK~Dl~~~~~~~-------------------------------------------------------- 216 (353)
T 2x2e_A 193 VDPQGQRTIGVITKLDLMDEGTDA-------------------------------------------------------- 216 (353)
T ss_dssp HCTTCTTEEEEEECGGGSCTTCCC--------------------------------------------------------
T ss_pred hCcCCCceEEEeccccccCcchhH--------------------------------------------------------
Confidence 788888999999999998765432
Q ss_pred HHHhhhcCcCCCceeeeecccccccccchHHHHhcCcceeeeecEEEEEcCChhhhhhccCHHHHHHHHHHHhhc--ccc
Q psy5059 455 LKLAKETDVDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKLGIIGVVNRSQQDIIDNKSIKDAIKDEAAFLQR--KYP 532 (1036)
Q Consensus 455 l~la~~vd~~g~RtIgVlTK~Dlmd~gt~~~~il~g~~~~L~LG~~~V~NRs~~di~~~~s~~~al~~E~~fF~~--~~~ 532 (1036)
.+++.++..++++||+.|++.|+.+...-..+.+++..|..||.+ .|.
T Consensus 217 ------------------------------~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~e~~~f~~~~~~~ 266 (353)
T 2x2e_A 217 ------------------------------RDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFLSHPSYR 266 (353)
T ss_dssp ------------------------------HHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHHHHHHHHHCTTTG
T ss_pred ------------------------------HHHHhCCcccccCCceEEEeCCcccccccccHHHHHHHHHHHhccCCccc
Confidence 123445556677899999999999988777888999999999865 388
Q ss_pred ccccccChHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhcCCCCch----hH--HHHHHHHHHHHHHhhhh
Q psy5059 533 TLASRNGTLYLAKTLNRLLMHHIRDCLPDLKTRVNVMISQFQTLLNSYGEDVSD----KS--QTLLQIITKFASAYCST 605 (1036)
Q Consensus 533 ~l~~~~G~~~L~~~L~~iL~~hIr~~LP~l~~~I~~~l~~~e~~L~~lG~~~~~----~~--~~L~~~~~~F~~~~~~~ 605 (1036)
.++.++|+..|++.|++.|.+||+++||.++.+|+..+..++.+++++|+.+++ .. .+|++++++|+..++.-
T Consensus 267 ~~~~r~~~~~l~~~l~e~l~~~i~~~lP~l~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 345 (353)
T 2x2e_A 267 HLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVEEYKNFRPDKHGTDSRVDEMLRMYHALKEALSII 345 (353)
T ss_dssp GGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCCHHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCchhhhhHHHHHHHHHHHHHHHHHHh
Confidence 889999999999999999999999999999999999999999999999875532 34 79999999999887653
No 6
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=100.00 E-value=2.3e-41 Score=410.62 Aligned_cols=210 Identities=18% Similarity=0.253 Sum_probs=174.8
Q ss_pred cccChHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhcCCCCch----hHHHHHHHHHHHHHHhhhhccccc-
Q psy5059 536 SRNGTLYLAKTLNRLLMHHIRDCLPDLKTRVNVMISQFQTLLNSYGEDVSD----KSQTLLQIITKFASAYCSTVEENG- 610 (1036)
Q Consensus 536 ~~~G~~~L~~~L~~iL~~hIr~~LP~l~~~I~~~l~~~e~~L~~lG~~~~~----~~~~L~~~~~~F~~~~~~~le~~~- 610 (1036)
+++|+++|+++|+++|.+||+++||.++.+|+..+.+++.+|++||+++++ .+.||++++++|+..++.+++|.+
T Consensus 291 ~~~g~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~el~~lg~~~~~~~~~~~~~l~~~~~~f~~~~~~~~~g~~~ 370 (608)
T 3szr_A 291 GKATVPCLAEKLTSELITHICKSLPLLENQIKETHQRITEELQKYGVDIPEDENEKMFFLIDKVNAFNQDITALMQGEET 370 (608)
T ss_dssp CC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 489999999999999999999999999999999999999999999997643 345899999999988877765421
Q ss_pred -------h-------hH-----------------------------------------H------------------H--
Q psy5059 611 -------I-------FK-----------------------------------------F------------------I-- 615 (1036)
Q Consensus 611 -------i-------~~-----------------------------------------~------------------~-- 615 (1036)
+ |. | +
T Consensus 371 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~f~~~~~fe~lvk~qi~~l~~Pa~~~v~~ 450 (608)
T 3szr_A 371 VGEEDIRLFTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFENQAAAAELPGFVNYRTFETIVKQQIKALEEPAVDMLHT 450 (608)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCSSSCSSCTHHHHHHHHHHHGGGHHHHHHHHHH
T ss_pred CCCccccHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00 0 0
Q ss_pred ---------------hhccChhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhccCCCCccchhchhhhhhhhhhH
Q psy5059 616 ---------------ESKKNPALHERIVEVVTQLLRRRLPATNTMVENLLAIELAYINTKHPDFHKDAALVPSLIKSAEE 680 (1036)
Q Consensus 616 ---------------e~~r~p~L~~rI~evv~~lL~~~~~~~~~~i~~li~~E~~yint~hpdf~~~~~~~~~~~~~~~~ 680 (1036)
...+||+|++++.+++.++++++..+|++||.++++||+.| +|++|+|...
T Consensus 451 V~~~v~~~~~~~~~~~f~rfp~L~~~~~~~i~~~~~~~~~~a~~~i~~li~mE~~~-~~~d~~~~~~------------- 516 (608)
T 3szr_A 451 VTDMVRLAFTDVSIKNFEEFFNLHRTAKSKIEDIRAEQEREGEKLIRLHFQMEQIV-YGAFQSSSAT------------- 516 (608)
T ss_dssp HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCC--------------------
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccCCccccCC-------------
Confidence 12589999999999999999999999999999999999987 5888876510
Q ss_pred HhhhhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccchHHhhhcCHHHHHh
Q psy5059 681 DYQRRTLSEKEKRDCDVIERLIKSYFYIIRKSIQDTVPKAIMHFLVNYVKDNLQSELVTHLYKADSASELLNESEWVAQR 760 (1036)
Q Consensus 681 ~~~~~~~~~~~~~~~~~i~~~~~sYf~iv~k~~~d~vPk~i~~~lv~~~~~~l~~~l~~~l~~~~~~~~ll~E~~~ia~r 760 (1036)
. .....|+.+++|||+||+|+++|+|||+||||||+.+++.||++|++.||+.+.+.+||+|+|++++|
T Consensus 517 -----~------~~~~ei~~~l~sY~~iv~~~~~D~vP~~I~~~lv~~~~~~lq~~l~~~l~~~~~~~~ll~E~~~~~~~ 585 (608)
T 3szr_A 517 -----D------SSMEEIFQHLMAYHQEASKRISSHIPLIIQFFMLQTYGQQLQKAMLQLLQDKDTYSWLLKERSDTSDK 585 (608)
T ss_dssp -------------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTTTTCHHHHHHHTCCCHHHHHH
T ss_pred -----C------ccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHhCCCHHHHHH
Confidence 0 11234999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCc
Q psy5059 761 RKEASDTKYP 770 (1036)
Q Consensus 761 R~~~~~~~y~ 770 (1036)
|++|.+...+
T Consensus 586 R~~l~~~~~~ 595 (608)
T 3szr_A 586 RKFLKERLAR 595 (608)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988766544
No 7
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=100.00 E-value=3.6e-34 Score=319.08 Aligned_cols=312 Identities=61% Similarity=0.984 Sum_probs=225.3
Q ss_pred hhHHHHHHHHHhhhhcCCCCCCCCceEEeCcCCCChhhHHhhhcCCCcCcccccccccCceEEEEeeCCCCchhhhhhcc
Q psy5059 61 TAAAVINKLQDVFNTVGTDAIQLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDREKRTAAA 140 (1036)
Q Consensus 61 ~~~~l~~kL~~~~~~~g~~~i~lPqIvVvG~QSsGKSSlLEal~G~~flPrg~G~cTR~Pl~l~l~~~~~~~~~~~~~~~ 140 (1036)
.+++++|+|++++..+|...+++|+|+|+|.+|||||||+|+|+|.+|+|++.|+|||+|+++++.+.+...
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~-------- 73 (315)
T 1jwy_B 2 QLIPVINKLQDVFNTLGSDPLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIAD-------- 73 (315)
T ss_dssp CHHHHHHHHHHHTTTSSSCTTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCT--------
T ss_pred chHHHHHHHHHHHHHcCCCCCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcc--------
Confidence 589999999999999997788999999999999999999999999999999999999999999998764321
Q ss_pred CCCCccccccccccccccccchhhhhhhhhHHHHHhhccCCCcccccccccccccccCCcccCChhHHHHHHHHHHHHhc
Q psy5059 141 GTMDLDAWGQFLHTKDKVFRDFDDIRREIEDETERLAGKNKGICTMDLDAWGQFLHTKDKVFRDFDDIRREIEDETERLA 220 (1036)
Q Consensus 141 ~~~~~~~w~~~~~~~~~~~~df~~~r~ei~~e~~r~~~~~~~i~~~~~~~~~~f~~~~~~~~~~~~~I~~~I~~~~~~~~ 220 (1036)
... ....|+++.+.++..+.+|.++.+++..++.++.
T Consensus 74 ~~~-------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 110 (315)
T 1jwy_B 74 DGS-------------------------------------------QTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMT 110 (315)
T ss_dssp TSC-------------------------------------------CCCCEEEESSSTTCCBCCTHHHHHHHHHHCC---
T ss_pred ccc-------------------------------------------chhhhhhhhcccccccCCHHHHHHHHHHHHHHhc
Confidence 001 1123444444455555666667777777666777
Q ss_pred CCCCCcCCCcEEEEEeecCcccceeecCCCccccCCCCCchhHHHHHHHHHHHhhcCCCcEEEEEeccccccccchhhhh
Q psy5059 221 GKNKGICSEPIILKIYSTSVLNLTLVDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKL 300 (1036)
Q Consensus 221 g~~~~~S~d~I~L~I~~P~~~~LtlVDLPGi~~~~~~~q~~di~~~ir~lv~~yI~~~n~IIL~V~~An~D~~~s~al~l 300 (1036)
|.+++++++++.+++.+|+..+++|+||||+.+.+..+++.++......++..|+...+++|+++++++.++.+++
T Consensus 111 g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~---- 186 (315)
T 1jwy_B 111 GKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSD---- 186 (315)
T ss_dssp -----CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCS----
T ss_pred CCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhH----
Confidence 7788999999999999999999999999999877766777777778889999999999999988888777765433
Q ss_pred hhhcCCCCCcccceeccCCCCcccccCCCCCchHHHHHHHHHHhhhcCCCceEEEEEecCccccchHHHHHhhhccccCC
Q psy5059 301 AKETDVDGRRTLDLLDIDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKETDVDGR 380 (1036)
Q Consensus 301 ~r~~Dp~g~RTigvl~~~~~g~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~v~~~~d~~~~~~~~la~~~d~~g~ 380 (1036)
.+.+++.+++.|.
T Consensus 187 -------------------------------------------------------------------~~~i~~~~~~~~~ 199 (315)
T 1jwy_B 187 -------------------------------------------------------------------ALQLAKEVDPEGK 199 (315)
T ss_dssp -------------------------------------------------------------------HHHHHHHHCSSCS
T ss_pred -------------------------------------------------------------------HHHHHHHhCCCCC
Confidence 2357777888899
Q ss_pred ceEEEEecccccCCCchhhhhhcCcccccccccccccchHHHHHHHHHHhhccCCCcceeeeecccchhhhHHHHHHhhh
Q psy5059 381 RTLAVVTKIDLMDAGTDAIDILCGRVIPVKLDVDGRRTYIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKE 460 (1036)
Q Consensus 381 rti~VitK~Dl~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~v~~~i~~~~~ipla~ISA~td~~~qeil~la~~ 460 (1036)
++|+|+||||+.+++.+..
T Consensus 200 ~~i~v~NK~Dl~~~~~~~~------------------------------------------------------------- 218 (315)
T 1jwy_B 200 RTIGVITKLDLMDKGTDAM------------------------------------------------------------- 218 (315)
T ss_dssp SEEEEEECTTSSCSSCCCH-------------------------------------------------------------
T ss_pred cEEEEEcCcccCCcchHHH-------------------------------------------------------------
Confidence 9999999999987653321
Q ss_pred cCcCCCceeeeecccccccccchHHHHhcCcceeeeecEEEEEcCChhhhhhccCHHHHHHHHHHHhhc--ccccccccc
Q psy5059 461 TDVDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKLGIIGVVNRSQQDIIDNKSIKDAIKDEAAFLQR--KYPTLASRN 538 (1036)
Q Consensus 461 vd~~g~RtIgVlTK~Dlmd~gt~~~~il~g~~~~L~LG~~~V~NRs~~di~~~~s~~~al~~E~~fF~~--~~~~l~~~~ 538 (1036)
+.+.++..++.++|+.+.+.+...+..+..+.+.+..+..||.. .|..+..+.
T Consensus 219 -------------------------~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~~~~~~~~~~~ 273 (315)
T 1jwy_B 219 -------------------------EVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKNHPIYKSIANRS 273 (315)
T ss_dssp -------------------------HHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTCTTGGGSGGGC
T ss_pred -------------------------HHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhCCCccccchhcc
Confidence 11222223344689999999998887778888888888999965 377777899
Q ss_pred ChHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhc
Q psy5059 539 GTLYLAKTLNRLLMHHIRDCLPDLKTRVNVMISQFQTLLNSY 580 (1036)
Q Consensus 539 G~~~L~~~L~~iL~~hIr~~LP~l~~~I~~~l~~~e~~L~~l 580 (1036)
|+.+|...+.+.+..|++++||.++.+|+..+.+++++|++|
T Consensus 274 ~~~~l~~~lre~l~~~~~~elP~~~~~i~~~l~~~~~~l~~~ 315 (315)
T 1jwy_B 274 GTAYLSKTLNKLLMFHIRDTLPDLKVKVSKMLSDVQGELSTY 315 (315)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---------
T ss_pred CHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999998864
No 8
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=100.00 E-value=1.1e-31 Score=296.36 Aligned_cols=295 Identities=53% Similarity=0.877 Sum_probs=240.2
Q ss_pred hhhhHHHHHHHHHhhhhcCC-CCCCCCceEEeCcCCCChhhHHhhhcCCCcCcccccccccCceEEEEeeCCCCchhhhh
Q psy5059 59 KRTAAAVINKLQDVFNTVGT-DAIQLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDREKRT 137 (1036)
Q Consensus 59 ~~~~~~l~~kL~~~~~~~g~-~~i~lPqIvVvG~QSsGKSSlLEal~G~~flPrg~G~cTR~Pl~l~l~~~~~~~~~~~~ 137 (1036)
++.+++++++|++.+..+|. ...++|+|+|+|++|+|||||+++|+|.+|+|++.|+||++|+++++.+.+.
T Consensus 1 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~------- 73 (299)
T 2aka_B 1 MEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTT------- 73 (299)
T ss_dssp CTTHHHHHHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSS-------
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCc-------
Confidence 46789999999999998886 5678999999999999999999999999999999999999999999987532
Q ss_pred hccCCCCccccccccccccccccchhhhhhhhhHHHHHhhccCCCcccccccccccccccCCcccCChhHHHHHHHHHHH
Q psy5059 138 AAAGTMDLDAWGQFLHTKDKVFRDFDDIRREIEDETERLAGKNKGICTMDLDAWGQFLHTKDKVFRDFDDIRREIEDETE 217 (1036)
Q Consensus 138 ~~~~~~~~~~w~~~~~~~~~~~~df~~~r~ei~~e~~r~~~~~~~i~~~~~~~~~~f~~~~~~~~~~~~~I~~~I~~~~~ 217 (1036)
+|++|.+.++. .+.+++.+...++..+.
T Consensus 74 ---------~~~~~~~~~g~-------------------------------------------~~tt~~~~~~~~~~~~~ 101 (299)
T 2aka_B 74 ---------EYAEFLHCKGK-------------------------------------------KFTDFEEVRLEIEAETD 101 (299)
T ss_dssp ---------CEEEETTSTTC-------------------------------------------CBCCHHHHHHHHHHHHH
T ss_pred ---------ccchhhhcCCc-------------------------------------------ccCCHHHHHHHHHHHHH
Confidence 35555544333 34455555556666666
Q ss_pred HhcCCCCCcCCCcEEEEEeecCcccceeecCCCccccCCCCCchhHHHHHHHHHHHhhcCCCcEEEEEeccccccccchh
Q psy5059 218 RLAGKNKGICSEPIILKIYSTSVLNLTLVDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMATSES 297 (1036)
Q Consensus 218 ~~~g~~~~~S~d~I~L~I~~P~~~~LtlVDLPGi~~~~~~~q~~di~~~ir~lv~~yI~~~n~IIL~V~~An~D~~~s~a 297 (1036)
.+.|.+.+++.+.+.+++.+|+..+++|+||||+.+.+.+++++++....+.++..|+..++++||+|.+++.++.+++
T Consensus 102 ~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~- 180 (299)
T 2aka_B 102 RVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD- 180 (299)
T ss_dssp HHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCH-
T ss_pred HhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhH-
Confidence 7778888999999999999999999999999999887777778888888899999999999999888888887776654
Q ss_pred hhhhhhcCCCCCcccceeccCCCCcccccCCCCCchHHHHHHHHHHhhhcCCCceEEEEEecCccccchHHHHHhhhccc
Q psy5059 298 LKLAKETDVDGRRTLDLLDIDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKETDV 377 (1036)
Q Consensus 298 l~l~r~~Dp~g~RTigvl~~~~~g~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~v~~~~d~~~~~~~~la~~~d~ 377 (1036)
.+.+++.+++
T Consensus 181 ----------------------------------------------------------------------~~~~~~~~~~ 190 (299)
T 2aka_B 181 ----------------------------------------------------------------------ALKIAKEVDP 190 (299)
T ss_dssp ----------------------------------------------------------------------HHHHHHHHCT
T ss_pred ----------------------------------------------------------------------HHHHHHHhCC
Confidence 2356777788
Q ss_pred cCCceEEEEecccccCCCchhhhhhcCcccccccccccccchHHHHHHHHHHhhccCCCcceeeeecccchhhhHHHHHH
Q psy5059 378 DGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKLDVDGRRTYIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKL 457 (1036)
Q Consensus 378 ~g~rti~VitK~Dl~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~v~~~i~~~~~ipla~ISA~td~~~qeil~l 457 (1036)
.|.++|+|+||+|+.+++.+..
T Consensus 191 ~~~~~i~V~NK~Dl~~~~~~~~---------------------------------------------------------- 212 (299)
T 2aka_B 191 QGQRTIGVITKLDLMDEGTDAR---------------------------------------------------------- 212 (299)
T ss_dssp TCSSEEEEEECGGGSCTTCCCH----------------------------------------------------------
T ss_pred CCCeEEEEEEccccCCCCchHH----------------------------------------------------------
Confidence 8899999999999987643221
Q ss_pred hhhcCcCCCceeeeecccccccccchHHHHhcCcceeeeecEEEEEcCChhhhhhccCHHHHHHHHHHHhhc--cccccc
Q psy5059 458 AKETDVDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKLGIIGVVNRSQQDIIDNKSIKDAIKDEAAFLQR--KYPTLA 535 (1036)
Q Consensus 458 a~~vd~~g~RtIgVlTK~Dlmd~gt~~~~il~g~~~~L~LG~~~V~NRs~~di~~~~s~~~al~~E~~fF~~--~~~~l~ 535 (1036)
+.++++...+++||+.+++.|..+...-..+.+++..|..||.. .|....
T Consensus 213 ----------------------------~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~ 264 (299)
T 2aka_B 213 ----------------------------DVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLA 264 (299)
T ss_dssp ----------------------------HHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHHHHHHHCTTTGGGG
T ss_pred ----------------------------HHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHHHHHhcCCccccch
Confidence 11222223345589999999988866666788888889988854 488888
Q ss_pred cccChHHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q psy5059 536 SRNGTLYLAKTLNRLLMHHIRDCLPDLKTRVNVM 569 (1036)
Q Consensus 536 ~~~G~~~L~~~L~~iL~~hIr~~LP~l~~~I~~~ 569 (1036)
.++|+..|.+.+.+.+..|+++.||.+..+|+..
T Consensus 265 ~r~~~~~l~~~l~~~l~~~~~~~lP~~~~~i~~~ 298 (299)
T 2aka_B 265 DRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQ 298 (299)
T ss_dssp GGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhCHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Confidence 9999999999999999999999999999988764
No 9
>3ljb_A Interferon-induced GTP-binding protein MX1; four-helix-bundle, antiviral protein; 2.40A {Homo sapiens}
Probab=99.95 E-value=1.7e-28 Score=266.66 Aligned_cols=202 Identities=20% Similarity=0.182 Sum_probs=157.0
Q ss_pred CCcchHHHHHHHHHHHHHhhccccccccccccccccccceeehhhhhhhhhhhccccCCCCCCCH----HHHHHHHHhcc
Q psy5059 821 DVSDKSQTLLQIITKFASAYCSTVEGTARNIETTELCGGARICYIFHEIFGKVLDGINPLDGLTK----MDILTAIRNAT 896 (1036)
Q Consensus 821 ~~~~~~~~lL~~i~~F~~~f~~~I~G~~~~~~~~el~GGAri~~iF~~~F~~~i~~~~p~~~l~~----~dIr~aI~n~~ 896 (1036)
+++++..+|++.|+.|++++.+.+.|.... ..||+||...+-+.|.+-...++....... ++|...+++++
T Consensus 2 ~~~e~~~FLidkI~~F~~di~~l~~Gee~~-----~~~~~rlf~~lr~eF~~w~~~l~~~~~~~~~~i~~ev~~~e~~~r 76 (271)
T 3ljb_A 2 DENEKMFFLIDKVNAFNQDITALMQGEETV-----GEEDIRLFTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFENQYR 76 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCC-----CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCceecc-----cCCcchHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHcc
Confidence 346789999999999999999999997643 349999999999999988877776443333 78899999999
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHhccCC--CCC------------------------
Q psy5059 897 GPRPALFVPEVSFELLVKRQIRRLEEPSQRCVELVHEEMQRIIQHCEKEGN--IPA------------------------ 950 (1036)
Q Consensus 897 G~~~~lfvp~~aFe~Lvk~qI~~l~~Psl~cvdlV~~EL~~i~~~~~~~~~--~p~------------------------ 950 (1036)
|.+.|+|+|+.|||.|||+||++|++||++|++.|+++|.+++.++..+.. ||.
T Consensus 77 GrELPgFv~y~aFE~lVk~qI~~LeePAl~cl~~V~e~l~~~~~~i~~~~F~rFpnL~~~i~~~i~~i~~~~~~~Ae~~I 156 (271)
T 3ljb_A 77 GRELPGFVNYRTFETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVSIKNFEEFFNLHRTAKSKIEDIRAEQEREGEKLI 156 (271)
T ss_dssp ------CTTHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998875421 210
Q ss_pred -------------CC-CCCC-----------------------CCHHHH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q psy5059 951 -------------TT-SSRT-----------------------LSEKEK-RDCDVIERLIKSYFYIIRKSIQDTVPKAIM 992 (1036)
Q Consensus 951 -------------~~-~~~~-----------------------~~~~e~-~q~~~i~~lv~sYf~Iv~k~i~D~VPK~Im 992 (1036)
.+ -... .+.... ..+..|..++.|||+||+++++|+|||+||
T Consensus 157 ~~~~~mE~~vytqD~~Y~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~~l~sYf~i~~~rl~d~IP~~I~ 236 (271)
T 3ljb_A 157 RLHFQMEQIVYCQDQVYRGALQKVREKELEEEKKKKSWDFGAFQSSSATDSSMEEIFQHLMAYHQEASKRISSHIPLIIQ 236 (271)
T ss_dssp HHHHHHHTSCC----------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccCCHHHHHHHHHHHHHHhcccccccccccccccCCCCccchHHHHHHHHHHHHHHHHHHHHHHccHHHH
Confidence 00 0000 011111 456779999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccchhHHhcCCHHH
Q psy5059 993 HFLVNYVKDNLQSELVTHLYKADSASELLNESEWV 1027 (1036)
Q Consensus 993 ~~lVn~~~~~l~~~L~~~Ly~~~~~~~Ll~E~~~i 1027 (1036)
++||+.+++.||.+|+..||..+.++.||+|+|++
T Consensus 237 ~~ll~~~~~~lQ~~ml~~l~~~~~~~~LL~E~~d~ 271 (271)
T 3ljb_A 237 FFMLQTYGQQLQKAMLQLLQDKDTYSWLLKERSDT 271 (271)
T ss_dssp HHHTHHHHHHHHHHHHHTTSCGGGHHHHTCCC---
T ss_pred HHHHHHHHHHHHHHHHHHHhchhhHHHHhcCCCCC
Confidence 99999999999999999999999999999999985
No 10
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.84 E-value=1.2e-20 Score=221.88 Aligned_cols=78 Identities=12% Similarity=0.109 Sum_probs=63.0
Q ss_pred HHHhhhccccCCceEEEEecccccCCCchhhhhhcCcccccccccccccchHHHHHHHHHHhhccCCCcceeeeecccch
Q psy5059 369 LKLAKETDVDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKLDVDGRRTYIEAQIKQLVLHYISNPNSIILAVVTANTD 448 (1036)
Q Consensus 369 ~~la~~~d~~g~rti~VitK~Dl~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~v~~~i~~~~~ipla~ISA~td 448 (1036)
.+++..+...|.+.|.|+||||+.+...... +++.+.+..++.+..++++..+||+++
T Consensus 296 ~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~SA~~g 353 (456)
T 4dcu_A 296 KRIAGYAHEAGKAVVIVVNKWDAVDKDESTM----------------------KEFEENIRDHFQFLDYAPILFMSALTK 353 (456)
T ss_dssp HHHHHHHHHTTCEEEEEEECGGGSCCCSSHH----------------------HHHHHHHHHHCGGGTTSCEEECCTTTC
T ss_pred HHHHHHHHHcCCCEEEEEEChhcCCCchHHH----------------------HHHHHHHHHhcccCCCCCEEEEcCCCC
Confidence 4566777778999999999999987654433 677788889999999999999999999
Q ss_pred hhhHHHHHHhhhcCcCCCce
Q psy5059 449 MATSESLKLAKETDVDGRRT 468 (1036)
Q Consensus 449 ~~~qeil~la~~vd~~g~Rt 468 (1036)
.++.++++.+.+......++
T Consensus 354 ~gv~~l~~~i~~~~~~~~~~ 373 (456)
T 4dcu_A 354 KRIHTLMPAIIKASENHSLR 373 (456)
T ss_dssp TTGGGHHHHHHHHHHHHTCC
T ss_pred cCHHHHHHHHHHHHHHhccc
Confidence 99999998877665443333
No 11
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.83 E-value=2.6e-20 Score=217.70 Aligned_cols=79 Identities=11% Similarity=0.116 Sum_probs=60.9
Q ss_pred HHHhhhccccCCceEEEEecccccCCCchhhhhhcCcccccccccccccchHHHHHHHHHHhhccCCCcceeeeecccch
Q psy5059 369 LKLAKETDVDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKLDVDGRRTYIEAQIKQLVLHYISNPNSIILAVVTANTD 448 (1036)
Q Consensus 369 ~~la~~~d~~g~rti~VitK~Dl~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~v~~~i~~~~~ipla~ISA~td 448 (1036)
.++++.+...|.+.|.|+||||+.++..... +.+.+.+...+.+..++|+..+||++|
T Consensus 276 ~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~~~~~SA~tg 333 (436)
T 2hjg_A 276 KRIAGYAHEAGKAVVIVVNKWDAVDKDESTM----------------------KEFEENIRDHFQFLDYAPILFMSALTK 333 (436)
T ss_dssp HHHHHHHHHTTCEEEEEEECGGGSCCCTTHH----------------------HHHHHHHHHHCGGGTTSCEEECCTTTC
T ss_pred HHHHHHHHHcCCcEEEEEECccCCCcchHHH----------------------HHHHHHHHHhcccCCCCCEEEEecccC
Confidence 3456666667999999999999987644332 456677788888888999999999999
Q ss_pred hhhHHHHHHhhhcCcCCCcee
Q psy5059 449 MATSESLKLAKETDVDGRRTL 469 (1036)
Q Consensus 449 ~~~qeil~la~~vd~~g~RtI 469 (1036)
.++.++++.+.+......+++
T Consensus 334 ~~v~~l~~~i~~~~~~~~~~~ 354 (436)
T 2hjg_A 334 KRIHTLMPAIIKASENHSLRV 354 (436)
T ss_dssp TTGGGHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHHhhcCC
Confidence 999999988776654433333
No 12
>3ljb_A Interferon-induced GTP-binding protein MX1; four-helix-bundle, antiviral protein; 2.40A {Homo sapiens}
Probab=99.80 E-value=3.8e-19 Score=193.33 Aligned_cols=140 Identities=14% Similarity=0.150 Sum_probs=99.6
Q ss_pred hccChhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhccCCCCccchhchhhhh-hhhhhHH-hh--hhcchhhhh
Q psy5059 617 SKKNPALHERIVEVVTQLLRRRLPATNTMVENLLAIELAYINTKHPDFHKDAALVPSL-IKSAEED-YQ--RRTLSEKEK 692 (1036)
Q Consensus 617 ~~r~p~L~~rI~evv~~lL~~~~~~~~~~i~~li~~E~~yint~hpdf~~~~~~~~~~-~~~~~~~-~~--~~~~~~~~~ 692 (1036)
..+||+|++++.+++.+++.++..+|++||+++++||+ +++|+|+.|.++.+.+-.. .+..... .. .-..+....
T Consensus 127 F~rFpnL~~~i~~~i~~i~~~~~~~Ae~~I~~~~~mE~-~vytqD~~Y~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 205 (271)
T 3ljb_A 127 FEEFFNLHRTAKSKIEDIRAEQEREGEKLIRLHFQMEQ-IVYCQDQVYRGALQKVREKELEEEKKKKSWDFGAFQSSSAT 205 (271)
T ss_dssp HTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SCC--------------------------------------
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccCCHHHHHHHHHHHHHHhcccccccccccccccCCCCc
Confidence 37999999999999999999999999999999999999 8999999998874432110 0000000 00 000011112
Q ss_pred -hhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccchHHhhhcCHHH
Q psy5059 693 -RDCDVIERLIKSYFYIIRKSIQDTVPKAIMHFLVNYVKDNLQSELVTHLYKADSASELLNESEWV 757 (1036)
Q Consensus 693 -~~~~~i~~~~~sYf~iv~k~~~d~vPk~i~~~lv~~~~~~l~~~l~~~l~~~~~~~~ll~E~~~i 757 (1036)
..+.+|+.+++|||+||++|++|+|||+||||||+.+++.||++|++.||+++.+++||+|++++
T Consensus 206 ~~~~~Ei~~~l~sYf~i~~~rl~d~IP~~I~~~ll~~~~~~lQ~~ml~~l~~~~~~~~LL~E~~d~ 271 (271)
T 3ljb_A 206 DSSMEEIFQHLMAYHQEASKRISSHIPLIIQFFMLQTYGQQLQKAMLQLLQDKDTYSWLLKERSDT 271 (271)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTSCGGGHHHHTCCC---
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHhcCCCCC
Confidence 56778999999999999999999999999999999999999999999999999999999999975
No 13
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.79 E-value=3.2e-19 Score=208.64 Aligned_cols=79 Identities=13% Similarity=0.104 Sum_probs=61.1
Q ss_pred HHHhhhccccCCceEEEEecccccCCCchhhhhhcCcccccccccccccchHHHHHHHHHHhhccCCCcceeeeecccch
Q psy5059 369 LKLAKETDVDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKLDVDGRRTYIEAQIKQLVLHYISNPNSIILAVVTANTD 448 (1036)
Q Consensus 369 ~~la~~~d~~g~rti~VitK~Dl~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~v~~~i~~~~~ipla~ISA~td 448 (1036)
.+++..+...|.+.|.|+||||+.+...... +.+.+.+...+.+..++++.++||++|
T Consensus 282 ~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~SA~~g 339 (439)
T 1mky_A 282 QRMAGLMERRGRASVVVFNKWDLVVHREKRY----------------------DEFTKLFREKLYFIDYSPLIFTSADKG 339 (439)
T ss_dssp HHHHHHHHHTTCEEEEEEECGGGSTTGGGCH----------------------HHHHHHHHHHCGGGTTSCEEECBTTTT
T ss_pred HHHHHHHHHcCCCEEEEEECccCCCchhhHH----------------------HHHHHHHHHHhccCCCCcEEEEECCCC
Confidence 4466666778999999999999987543222 455666777888888999999999999
Q ss_pred hhhHHHHHHhhhcCcCCCcee
Q psy5059 449 MATSESLKLAKETDVDGRRTL 469 (1036)
Q Consensus 449 ~~~qeil~la~~vd~~g~RtI 469 (1036)
.++.++++.+.+......+++
T Consensus 340 ~gv~~l~~~i~~~~~~~~~~i 360 (439)
T 1mky_A 340 WNIDRMIDAMNLAYASYTTKV 360 (439)
T ss_dssp BSHHHHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhhcccC
Confidence 999999998877655444444
No 14
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.78 E-value=7.3e-19 Score=200.28 Aligned_cols=50 Identities=70% Similarity=0.988 Sum_probs=47.5
Q ss_pred CCCCeEEEeccCCCchHHHHHhhhcCCcccccCCccccccEEEeeccCCC
Q psy5059 5 IQLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPK 54 (1036)
Q Consensus 5 ~~lp~i~vvg~~~~gkss~~~~~~g~~~~pr~~~~~trrpl~l~l~~~~~ 54 (1036)
++||+|||||.||||||||||+|+|.+|+|+|+|.|||+|+.+++.+.+.
T Consensus 32 ~~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~ 81 (360)
T 3t34_A 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDD 81 (360)
T ss_dssp CCCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSS
T ss_pred ccCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCC
Confidence 69999999999999999999999999999999999999999999987644
No 15
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.73 E-value=2.2e-17 Score=187.70 Aligned_cols=51 Identities=65% Similarity=1.030 Sum_probs=47.6
Q ss_pred CCCCCeEEEeccCCCchHHHHHhhhcCCcccccCCccccccEEEeeccCCC
Q psy5059 4 AIQLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPK 54 (1036)
Q Consensus 4 ~~~lp~i~vvg~~~~gkss~~~~~~g~~~~pr~~~~~trrpl~l~l~~~~~ 54 (1036)
.+++|+|||||.||||||||+|+|+|.+|+|++.|+||++|.++++.+.+.
T Consensus 28 ~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~ 78 (353)
T 2x2e_A 28 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATT 78 (353)
T ss_dssp GCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSS
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCc
Confidence 478999999999999999999999999999999999999999999987643
No 16
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.52 E-value=1e-13 Score=170.67 Aligned_cols=45 Identities=24% Similarity=0.470 Sum_probs=41.6
Q ss_pred CCCceEEeCcCCCChhhHHhhhcCCCcCcccccccccCceEEEEe
Q psy5059 82 QLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLY 126 (1036)
Q Consensus 82 ~lPqIvVvG~QSsGKSSlLEal~G~~flPrg~G~cTR~Pl~l~l~ 126 (1036)
+-++|+|+|.+|+|||||+++|+|.+++|++.+.||+||+.+...
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g 112 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYG 112 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeC
Confidence 357899999999999999999999999999999999999998653
No 17
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.49 E-value=2.6e-13 Score=149.23 Aligned_cols=51 Identities=65% Similarity=1.028 Sum_probs=46.8
Q ss_pred CCCCCeEEEeccCCCchHHHHHhhhcCCcccccCCccccccEEEeeccCCC
Q psy5059 4 AIQLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPK 54 (1036)
Q Consensus 4 ~~~lp~i~vvg~~~~gkss~~~~~~g~~~~pr~~~~~trrpl~l~l~~~~~ 54 (1036)
..++|+|+|||.||||||||+|+|+|.+|.|++.|+||++|..+++.+.+.
T Consensus 23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~ 73 (299)
T 2aka_B 23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTT 73 (299)
T ss_dssp TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSS
T ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCc
Confidence 468899999999999999999999999999999999999999999877543
No 18
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.18 E-value=8.1e-11 Score=123.22 Aligned_cols=73 Identities=10% Similarity=0.087 Sum_probs=46.1
Q ss_pred HHHhhhccccCCceEEEEecccccCCCchhhhhhcCcccccccccccccchHHHHHHHHHHhhc--cCCCcceeeeeccc
Q psy5059 369 LKLAKETDVDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKLDVDGRRTYIEAQIKQLVLHYI--SNPNSIILAVVTAN 446 (1036)
Q Consensus 369 ~~la~~~d~~g~rti~VitK~Dl~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~v~~~i--~~~~~ipla~ISA~ 446 (1036)
..+.+.+...+.++|.|+||+|+.+...-. ...+.+.+.+..+. ......++..+||+
T Consensus 134 ~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~--------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~ 193 (223)
T 4dhe_A 134 RRMIEWFAPTGKPIHSLLTKCDKLTRQESI--------------------NALRATQKSLDAYRDAGYAGKLTVQLFSAL 193 (223)
T ss_dssp HHHHHHHGGGCCCEEEEEECGGGSCHHHHH--------------------HHHHHHHHHHHHHHHHTCCSCEEEEEEBTT
T ss_pred HHHHHHHHhcCCCEEEEEeccccCChhhHH--------------------HHHHHHHHHHHhhhhcccCCCCeEEEeecC
Confidence 344555555788999999999998642110 00112222222221 11467788999999
Q ss_pred chhhhHHHHHHhhhc
Q psy5059 447 TDMATSESLKLAKET 461 (1036)
Q Consensus 447 td~~~qeil~la~~v 461 (1036)
++.++.+++....+.
T Consensus 194 ~g~gv~~l~~~l~~~ 208 (223)
T 4dhe_A 194 KRTGLDDAHALIESW 208 (223)
T ss_dssp TTBSHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHh
Confidence 999999999876544
No 19
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.14 E-value=4e-10 Score=115.08 Aligned_cols=66 Identities=15% Similarity=0.130 Sum_probs=46.4
Q ss_pred HHhhhccccCCceEEEEecccccCCCchhhhhhcCcccccccccccccchHHHHHHHHHHhhccCCCcceeeeecccchh
Q psy5059 370 KLAKETDVDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKLDVDGRRTYIEAQIKQLVLHYISNPNSIILAVVTANTDM 449 (1036)
Q Consensus 370 ~la~~~d~~g~rti~VitK~Dl~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~v~~~i~~~~~ipla~ISA~td~ 449 (1036)
.+.+.+...+.+.+.|+||+|+.+...- ......+...+......+...+||+++.
T Consensus 125 ~~~~~~~~~~~p~i~v~nK~Dl~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 180 (195)
T 1svi_A 125 QMYEFLKYYGIPVIVIATKADKIPKGKW------------------------DKHAKVVRQTLNIDPEDELILFSSETKK 180 (195)
T ss_dssp HHHHHHHHTTCCEEEEEECGGGSCGGGH------------------------HHHHHHHHHHHTCCTTSEEEECCTTTCT
T ss_pred HHHHHHHHcCCCEEEEEECcccCChHHH------------------------HHHHHHHHHHHcccCCCceEEEEccCCC
Confidence 3445555578899999999999875321 1223344554555556788899999999
Q ss_pred hhHHHHHHhh
Q psy5059 450 ATSESLKLAK 459 (1036)
Q Consensus 450 ~~qeil~la~ 459 (1036)
++.+++....
T Consensus 181 gv~~l~~~l~ 190 (195)
T 1svi_A 181 GKDEAWGAIK 190 (195)
T ss_dssp THHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999987753
No 20
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.06 E-value=2e-09 Score=109.31 Aligned_cols=67 Identities=16% Similarity=0.053 Sum_probs=48.6
Q ss_pred HHhhhccccCCceEEEEecccccCCCchhhhhhcCcccccccccccccchHHHHHHHHHHhhccCCCcceeeeecccchh
Q psy5059 370 KLAKETDVDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKLDVDGRRTYIEAQIKQLVLHYISNPNSIILAVVTANTDM 449 (1036)
Q Consensus 370 ~la~~~d~~g~rti~VitK~Dl~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~v~~~i~~~~~ipla~ISA~td~ 449 (1036)
.+.+.+...+.+.|.|+||+|+.++... ....+.+..........+...+||+++.
T Consensus 124 ~~~~~~~~~~~p~i~v~nK~Dl~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 179 (195)
T 3pqc_A 124 MMVEWMKSLNIPFTIVLTKMDKVKMSER------------------------AKKLEEHRKVFSKYGEYTIIPTSSVTGE 179 (195)
T ss_dssp HHHHHHHHTTCCEEEEEECGGGSCGGGH------------------------HHHHHHHHHHHHSSCCSCEEECCTTTCT
T ss_pred HHHHHHHHcCCCEEEEEEChhcCChHHH------------------------HHHHHHHHHHHhhcCCCceEEEecCCCC
Confidence 4555555568899999999999864321 2334455556666666788899999999
Q ss_pred hhHHHHHHhhh
Q psy5059 450 ATSESLKLAKE 460 (1036)
Q Consensus 450 ~~qeil~la~~ 460 (1036)
++.++++...+
T Consensus 180 gv~~l~~~l~~ 190 (195)
T 3pqc_A 180 GISELLDLIST 190 (195)
T ss_dssp THHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99999987643
No 21
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.06 E-value=2.2e-09 Score=119.56 Aligned_cols=126 Identities=11% Similarity=0.169 Sum_probs=78.7
Q ss_pred cccceeecCCCccccCCCCCchhHHHHHHHHHHHhhcCCCcEEEEEeccccccccchhhhhhhhcCCCCCcccceeccCC
Q psy5059 240 VLNLTLVDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKETDVDGRRTLDLLDIDL 319 (1036)
Q Consensus 240 ~~~LtlVDLPGi~~~~~~~q~~di~~~ir~lv~~yI~~~n~IIL~V~~An~D~~~s~al~l~r~~Dp~g~RTigvl~~~~ 319 (1036)
...++|+||||+.+... .....+....++..|+...+++++++...+ .....+
T Consensus 58 ~~~i~lvDTPG~~~~~~---~~~l~~~~~~~~~~~l~~aD~il~VvD~~~-~~~~~~----------------------- 110 (308)
T 3iev_A 58 EAQIIFLDTPGIYEPKK---SDVLGHSMVEIAKQSLEEADVILFMIDATE-GWRPRD----------------------- 110 (308)
T ss_dssp TEEEEEEECCCCCCCCT---TCHHHHHHHHHHHHHHHHCSEEEEEEETTT-BSCHHH-----------------------
T ss_pred CCeEEEEECcCCCcccc---chhHHHHHHHHHHHHhhcCCEEEEEEeCCC-CCCchh-----------------------
Confidence 45788999999865321 123445566778888888886666555432 221111
Q ss_pred CCcccccCCCCCchHHHHHHHHHHhhhcCCCceEEEEEecCccccchHHHHH-hhhccccCCceEEEEecccccCCCchh
Q psy5059 320 PGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKL-AKETDVDGRRTLAVVTKIDLMDAGTDA 398 (1036)
Q Consensus 320 ~g~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~v~~~~d~~~~~~~~l-a~~~d~~g~rti~VitK~Dl~~~g~~~ 398 (1036)
..+ ...+...+.+.|.|+||+|+.+.....
T Consensus 111 -------------------------------------------------~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~ 141 (308)
T 3iev_A 111 -------------------------------------------------EEIYQNFIKPLNKPVIVVINKIDKIGPAKNV 141 (308)
T ss_dssp -------------------------------------------------HHHHHHHTGGGCCCEEEEEECGGGSSSGGGG
T ss_pred -------------------------------------------------HHHHHHHHHhcCCCEEEEEECccCCCCHHHH
Confidence 122 333444678999999999998432221
Q ss_pred hhhhcCcccccccccccccchHHHHHHHHHHhhccCCCcceeeeecccchhhhHHHHHHhhhcCcCCC
Q psy5059 399 IDILCGRVIPVKLDVDGRRTYIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKETDVDGR 466 (1036)
Q Consensus 399 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~v~~~i~~~~~ipla~ISA~td~~~qeil~la~~vd~~g~ 466 (1036)
......+...+. .+.+...+||+++.++.+++......-+.+.
T Consensus 142 -----------------------~~~~~~l~~~~~--~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~~ 184 (308)
T 3iev_A 142 -----------------------LPLIDEIHKKHP--ELTEIVPISALKGANLDELVKTILKYLPEGE 184 (308)
T ss_dssp -----------------------HHHHHHHHHHCT--TCCCEEECBTTTTBSHHHHHHHHHHHSCBCC
T ss_pred -----------------------HHHHHHHHHhcc--CCCeEEEEeCCCCCCHHHHHHHHHHhCccCC
Confidence 112222333331 4567788999999999999988777655544
No 22
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.06 E-value=2.7e-09 Score=118.60 Aligned_cols=59 Identities=12% Similarity=-0.036 Sum_probs=41.3
Q ss_pred CCceEEEEecccccCCCchhhhhhcCcccccccccccccchHHHHHHHHHHhhccCCCcceeeeecccchhhhHHHHHHh
Q psy5059 379 GRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKLDVDGRRTYIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLA 458 (1036)
Q Consensus 379 g~rti~VitK~Dl~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~v~~~i~~~~~ipla~ISA~td~~~qeil~la 458 (1036)
+.+.|.|+||+|+.++..+ +...+..+ ..+.+...+||+++.++.+++...
T Consensus 117 ~~p~ilV~NK~Dl~~~~~~--------------------------~~~~~~~~---~~~~~~~~iSA~~g~gv~~l~~~l 167 (301)
T 1wf3_A 117 KVPILLVGNKLDAAKYPEE--------------------------AMKAYHEL---LPEAEPRMLSALDERQVAELKADL 167 (301)
T ss_dssp TSCEEEEEECGGGCSSHHH--------------------------HHHHHHHT---STTSEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEEECcccCCchHH--------------------------HHHHHHHh---cCcCcEEEEeCCCCCCHHHHHHHH
Confidence 7899999999999754210 12222222 345677889999999999999988
Q ss_pred hhcCcCCC
Q psy5059 459 KETDVDGR 466 (1036)
Q Consensus 459 ~~vd~~g~ 466 (1036)
...-+++.
T Consensus 168 ~~~l~~~~ 175 (301)
T 1wf3_A 168 LALMPEGP 175 (301)
T ss_dssp HTTCCBCC
T ss_pred HHhcccCC
Confidence 76654443
No 23
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.98 E-value=6.6e-10 Score=120.66 Aligned_cols=64 Identities=8% Similarity=0.103 Sum_probs=44.3
Q ss_pred HHhhhccccCCceEEEEecccccCCCchhhhhhcCcccccccccccccchHHHHHHHHHHhhccCCCcceeeeecccchh
Q psy5059 370 KLAKETDVDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKLDVDGRRTYIEAQIKQLVLHYISNPNSIILAVVTANTDM 449 (1036)
Q Consensus 370 ~la~~~d~~g~rti~VitK~Dl~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~v~~~i~~~~~ipla~ISA~td~ 449 (1036)
.+..++...|.++|.|+||+|+.++..... ..+.+. ..+ .+|...+||+++.
T Consensus 101 ~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~--------------------~~~~l~----~~l----g~~vi~~SA~~g~ 152 (256)
T 3iby_A 101 YLTSQLFELGKPVVVALNMMDIAEHRGISI--------------------DTEKLE----SLL----GCSVIPIQAHKNI 152 (256)
T ss_dssp HHHHHHTTSCSCEEEEEECHHHHHHTTCEE--------------------CHHHHH----HHH----CSCEEECBGGGTB
T ss_pred HHHHHHHHcCCCEEEEEEChhcCCcCCcHH--------------------HHHHHH----HHc----CCCEEEEECCCCC
Confidence 355555566899999999999976432111 001222 222 3588999999999
Q ss_pred hhHHHHHHhhhc
Q psy5059 450 ATSESLKLAKET 461 (1036)
Q Consensus 450 ~~qeil~la~~v 461 (1036)
++.++++.+.+.
T Consensus 153 gi~el~~~i~~~ 164 (256)
T 3iby_A 153 GIPALQQSLLHC 164 (256)
T ss_dssp SHHHHHHHHHTC
T ss_pred CHHHHHHHHHhh
Confidence 999999998777
No 24
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.95 E-value=6.5e-10 Score=123.23 Aligned_cols=98 Identities=59% Similarity=0.998 Sum_probs=67.5
Q ss_pred CCCCCeEEEeccCCCchHHHHHhhhcCCcccccCCccccccEEEeeccCCCchhhhhhhHHHHHHHHHhhhhcCCCCCCC
Q psy5059 4 AIQLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDREKRTAAAVINKLQDVFNTVGTDAIQL 83 (1036)
Q Consensus 4 ~~~lp~i~vvg~~~~gkss~~~~~~g~~~~pr~~~~~trrpl~l~l~~~~~~~~~~~~~~~l~~kL~~~~~~~g~~~i~l 83 (1036)
.+++|+|+|||.||||||||+|+|+|.+++|++.++||++|..++..+.+....
T Consensus 21 ~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~-------------------------- 74 (315)
T 1jwy_B 21 PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADD-------------------------- 74 (315)
T ss_dssp TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTT--------------------------
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCccc--------------------------
Confidence 578999999999999999999999999999999999999999999887543100
Q ss_pred CceEEeCcCCCChhhHHhhhcCCCcCcccccccccCceEEEEeeCCCCchhhhhhccCCCCccccccccccccccccchh
Q psy5059 84 PQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDREKRTAAAGTMDLDAWGQFLHTKDKVFRDFD 163 (1036)
Q Consensus 84 PqIvVvG~QSsGKSSlLEal~G~~flPrg~G~cTR~Pl~l~l~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~df~ 163 (1036)
.+ ... .|+++.+.++..+.+|.
T Consensus 75 --------------------~~------------------------~~~--------------~~~~~~~~~~~~~~~~~ 96 (315)
T 1jwy_B 75 --------------------GS------------------------QTQ--------------EWGEFLHKPNDMFYDFS 96 (315)
T ss_dssp --------------------SC------------------------CCC--------------CEEEESSSTTCCBCCTH
T ss_pred --------------------cc------------------------chh--------------hhhhhhcccccccCCHH
Confidence 00 000 48899999999999999
Q ss_pred hhhhhhhHHHHHhhccCCCccc
Q psy5059 164 DIRREIEDETERLAGKNKGICT 185 (1036)
Q Consensus 164 ~~r~ei~~e~~r~~~~~~~i~~ 185 (1036)
+++.+++.++.++.|.+++++.
T Consensus 97 ~~~~~i~~~~~~~~g~~~~~~~ 118 (315)
T 1jwy_B 97 EIREEIIRDTDRMTGKNKGISA 118 (315)
T ss_dssp HHHHHHHHHCC--------CCC
T ss_pred HHHHHHHHHHHHhcCCCCCccC
Confidence 9999999998888887776643
No 25
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.92 E-value=2.8e-09 Score=124.51 Aligned_cols=25 Identities=32% Similarity=0.634 Sum_probs=21.5
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCC
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKS 107 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~ 107 (1036)
+|+|++||++|+|||||+++|+|..
T Consensus 1 ~~~v~ivG~pnvGKStL~nrl~~~~ 25 (439)
T 1mky_A 1 MATVLIVGRPNVGKSTLFNKLVKKK 25 (439)
T ss_dssp -CEEEEECCTTSSHHHHHHHHHC--
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4899999999999999999999876
No 26
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.89 E-value=5.5e-09 Score=102.72 Aligned_cols=26 Identities=35% Similarity=0.576 Sum_probs=23.5
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
+|+|+++|+.++||||+++++.|..+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~ 26 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRS 26 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCe
Confidence 47899999999999999999998763
No 27
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.89 E-value=2e-09 Score=126.27 Aligned_cols=30 Identities=23% Similarity=0.565 Sum_probs=24.2
Q ss_pred CCCCCCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 79 DAIQLPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 79 ~~i~lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
.....|.|++||.+++|||||+++|+|..+
T Consensus 19 ~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~ 48 (456)
T 4dcu_A 19 SHMGKPVVAIVGRPNVGKSTIFNRIAGERI 48 (456)
T ss_dssp ----CCEEEEECSSSSSHHHHHHHHEEEEE
T ss_pred hhcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 345689999999999999999999998663
No 28
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.87 E-value=3.4e-09 Score=123.68 Aligned_cols=26 Identities=27% Similarity=0.636 Sum_probs=23.7
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
.|.|++||.+|+|||||+++|+|..+
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~ 28 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERI 28 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEEC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 58999999999999999999998753
No 29
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.83 E-value=1.7e-08 Score=102.19 Aligned_cols=26 Identities=35% Similarity=0.607 Sum_probs=23.3
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
+++|+++|+.++||||++++++|..|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~ 26 (190)
T 2cxx_A 1 MATIIFAGRSNVGKSTLIYRLTGKKV 26 (190)
T ss_dssp -CEEEEEEBTTSSHHHHHHHHHSCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcCC
Confidence 47899999999999999999998774
No 30
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.79 E-value=4.1e-08 Score=98.28 Aligned_cols=27 Identities=15% Similarity=0.484 Sum_probs=24.8
Q ss_pred CCCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 82 QLPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 82 ~lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
..++|+++|+.++||||+++++++..|
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~ 33 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKV 33 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 468999999999999999999998875
No 31
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.77 E-value=1.8e-08 Score=110.05 Aligned_cols=69 Identities=14% Similarity=0.178 Sum_probs=33.8
Q ss_pred HHHhhhccccCCceEEEEecccccCCCchhhhhhcCcccccccccccccchHHHHHHHHHHhhccCCCcceeeeecccch
Q psy5059 369 LKLAKETDVDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKLDVDGRRTYIEAQIKQLVLHYISNPNSIILAVVTANTD 448 (1036)
Q Consensus 369 ~~la~~~d~~g~rti~VitK~Dl~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~v~~~i~~~~~ipla~ISA~td 448 (1036)
..+.+.+.. +.++|.|+||+|+.....- ..+...+...+... .+++..+||.++
T Consensus 135 ~~~l~~l~~-~~pvi~V~nK~D~~~~~e~------------------------~~~~~~i~~~l~~~-~i~v~~~sa~~~ 188 (274)
T 3t5d_A 135 IEFMKRLHE-KVNIIPLIAKADTLTPEEC------------------------QQFKKQIMKEIQEH-KIKIYEFPETDD 188 (274)
T ss_dssp HHHHHHHTT-TSCEEEEESSGGGSCHHHH------------------------HHHHHHHHHHHHHT-TCCCCCC-----
T ss_pred HHHHHHHhc-cCCEEEEEeccCCCCHHHH------------------------HHHHHHHHHHHHHc-CCeEEcCCCCCC
Confidence 456666666 8999999999999753211 22333344444322 234555789999
Q ss_pred hhhHHHHHHhhhcCc
Q psy5059 449 MATSESLKLAKETDV 463 (1036)
Q Consensus 449 ~~~qeil~la~~vd~ 463 (1036)
....++++...+.-|
T Consensus 189 ~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 189 EEENKLVKKIKDRLP 203 (274)
T ss_dssp ------CHHHHHTCS
T ss_pred hhHHHHHHHHhcCCC
Confidence 888888777665433
No 32
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.75 E-value=9.3e-08 Score=97.49 Aligned_cols=62 Identities=13% Similarity=0.083 Sum_probs=40.2
Q ss_pred cccCCceEEEEecccccCCCchhhhhhcCcccccccccccccchHHHHHHHHHHhhccCCCcceeeeecccchhhhHHHH
Q psy5059 376 DVDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKLDVDGRRTYIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESL 455 (1036)
Q Consensus 376 d~~g~rti~VitK~Dl~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~v~~~i~~~~~ipla~ISA~td~~~qeil 455 (1036)
...+.+.|.|+||+|+.+.... ..+...+..........+...+||+++.++.+++
T Consensus 121 ~~~~~piilv~NK~Dl~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~ 176 (188)
T 1zd9_A 121 QLQGIPVLVLGNKRDLPGALDE------------------------KELIEKMNLSAIQDREICCYSISCKEKDNIDITL 176 (188)
T ss_dssp GGTTCCEEEEEECTTSTTCCCH------------------------HHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred ccCCCCEEEEEECCCCccCCCH------------------------HHHHHHhChhhhccCCeeEEEEECCCCCCHHHHH
Confidence 3467889999999999764221 1122222212222345677889999999999999
Q ss_pred HHhhhc
Q psy5059 456 KLAKET 461 (1036)
Q Consensus 456 ~la~~v 461 (1036)
....+.
T Consensus 177 ~~l~~~ 182 (188)
T 1zd9_A 177 QWLIQH 182 (188)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 876443
No 33
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.75 E-value=1e-08 Score=112.36 Aligned_cols=65 Identities=6% Similarity=-0.011 Sum_probs=42.4
Q ss_pred HhhhccccCCceEEEEecccccCCCchhhhhhcCcccccccccccccchHHHHHHHHHHhhccCCCcceeeeecccchhh
Q psy5059 371 LAKETDVDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKLDVDGRRTYIEAQIKQLVLHYISNPNSIILAVVTANTDMA 450 (1036)
Q Consensus 371 la~~~d~~g~rti~VitK~Dl~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~v~~~i~~~~~ipla~ISA~td~~ 450 (1036)
+..++...+.+.|.|+||+|+.+...... ..+.+.+ .+ ..|.+.+||+++.+
T Consensus 104 ~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~--------------------~~~~l~~----~l----g~~~i~~SA~~g~g 155 (274)
T 3i8s_A 104 LTLQLLELGIPCIVALNMLDIAEKQNIRI--------------------EIDALSA----RL----GCPVIPLVSTRGRG 155 (274)
T ss_dssp HHHHHHHHTCCEEEEEECHHHHHHTTEEE--------------------CHHHHHH----HH----TSCEEECCCGGGHH
T ss_pred HHHHHHhcCCCEEEEEECccchhhhhHHH--------------------HHHHHHH----hc----CCCEEEEEcCCCCC
Confidence 44444445889999999999975321110 0012222 22 25788899999999
Q ss_pred hHHHHHHhhhcCc
Q psy5059 451 TSESLKLAKETDV 463 (1036)
Q Consensus 451 ~qeil~la~~vd~ 463 (1036)
+.+++....+.-+
T Consensus 156 i~el~~~i~~~~~ 168 (274)
T 3i8s_A 156 IEALKLAIDRYKA 168 (274)
T ss_dssp HHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHh
Confidence 9999988766644
No 34
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.74 E-value=1.7e-08 Score=101.05 Aligned_cols=26 Identities=19% Similarity=0.600 Sum_probs=23.7
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
..+|+|+|+.++||||+++++.+..|
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~~ 33 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDKY 33 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcC
Confidence 46899999999999999999998775
No 35
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.73 E-value=9.1e-08 Score=100.99 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=24.5
Q ss_pred CCCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 82 QLPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 82 ~lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
..++|+|+|+.++|||||+++|+|..|
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~ 54 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANV 54 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 357999999999999999999998875
No 36
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.73 E-value=8.1e-08 Score=103.55 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=24.2
Q ss_pred CCCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 82 QLPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 82 ~lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
..++|+++|..++||||++++|+|...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~ 47 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQA 47 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCC
Confidence 357899999999999999999998773
No 37
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.72 E-value=2.7e-08 Score=101.94 Aligned_cols=26 Identities=27% Similarity=0.667 Sum_probs=21.5
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
..+|+|+|+.++|||||+++|.+..|
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~~ 51 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDTF 51 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC---
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45899999999999999999998775
No 38
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.72 E-value=1e-07 Score=94.53 Aligned_cols=60 Identities=12% Similarity=0.054 Sum_probs=39.4
Q ss_pred ccCCceEEEEecccccCCCchhhhhhcCcccccccccccccchHHHHHHHHHHhhccCCCcceeeeecccchhhhHHHHH
Q psy5059 377 VDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKLDVDGRRTYIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLK 456 (1036)
Q Consensus 377 ~~g~rti~VitK~Dl~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~v~~~i~~~~~ipla~ISA~td~~~qeil~ 456 (1036)
..+.+.+.|+||.|+.+.... ..+...+..........+...+||+++.++.+++.
T Consensus 106 ~~~~piilv~nK~Dl~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (171)
T 1upt_A 106 LRKAILVVFANKQDMEQAMTS------------------------SEMANSLGLPALKDRKWQIFKTSATKGTGLDEAME 161 (171)
T ss_dssp GTTCEEEEEEECTTSTTCCCH------------------------HHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHH
T ss_pred hCCCEEEEEEECCCCcCCCCH------------------------HHHHHHhCchhccCCceEEEECcCCCCcCHHHHHH
Confidence 457899999999999765321 12222222222222344788899999999999987
Q ss_pred Hhhh
Q psy5059 457 LAKE 460 (1036)
Q Consensus 457 la~~ 460 (1036)
...+
T Consensus 162 ~l~~ 165 (171)
T 1upt_A 162 WLVE 165 (171)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7543
No 39
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.71 E-value=7.9e-08 Score=95.12 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=22.9
Q ss_pred CceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 84 PQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 84 PqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
.+|+++|+.++||||+++++.|..|
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~ 28 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTF 28 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4799999999999999999998765
No 40
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.71 E-value=6.6e-08 Score=96.63 Aligned_cols=26 Identities=31% Similarity=0.589 Sum_probs=23.5
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
.++|+++|+.++||||+++++.+..|
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~~ 32 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNKF 32 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC
Confidence 46899999999999999999998764
No 41
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.70 E-value=4.3e-08 Score=108.87 Aligned_cols=71 Identities=11% Similarity=0.115 Sum_probs=48.3
Q ss_pred HHHhhhccccCCceEEEEecccccCCCchhhhhhcCcccccccccccccchHHHHHHHHHHhhccCCCcceeeeecccch
Q psy5059 369 LKLAKETDVDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKLDVDGRRTYIEAQIKQLVLHYISNPNSIILAVVTANTD 448 (1036)
Q Consensus 369 ~~la~~~d~~g~rti~VitK~Dl~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~v~~~i~~~~~ipla~ISA~td 448 (1036)
..+++.+...+.+.|.|+||+|+.... +.+...+........+.....+||+++
T Consensus 106 ~~i~~~l~~~~~P~ilvlNK~D~~~~~--------------------------~~~~~~l~~l~~~~~~~~~i~iSA~~g 159 (301)
T 1ega_A 106 EMVLNKLREGKAPVILAVNKVDNVQEK--------------------------ADLLPHLQFLASQMNFLDIVPISAETG 159 (301)
T ss_dssp HHHHHHHHSSSSCEEEEEESTTTCCCH--------------------------HHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred HHHHHHHHhcCCCEEEEEECcccCccH--------------------------HHHHHHHHHHHHhcCcCceEEEECCCC
Confidence 345666666789999999999997521 122333333333334456778999999
Q ss_pred hhhHHHHHHhhhcCcCC
Q psy5059 449 MATSESLKLAKETDVDG 465 (1036)
Q Consensus 449 ~~~qeil~la~~vd~~g 465 (1036)
.+..++++.....-+.+
T Consensus 160 ~~v~~l~~~i~~~l~~~ 176 (301)
T 1ega_A 160 LNVDTIAAIVRKHLPEA 176 (301)
T ss_dssp TTHHHHHHHHHTTCCBC
T ss_pred CCHHHHHHHHHHhCCcC
Confidence 99999999887665444
No 42
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.70 E-value=2.2e-08 Score=100.39 Aligned_cols=26 Identities=19% Similarity=0.436 Sum_probs=23.7
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
..+|+++|+.++|||||++++.+..|
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~~ 35 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGAF 35 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCC
Confidence 46899999999999999999998875
No 43
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.69 E-value=7e-08 Score=94.94 Aligned_cols=26 Identities=27% Similarity=0.528 Sum_probs=23.3
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
..+|+++|+.++|||||++++.+..|
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~ 29 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEF 29 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcc
Confidence 35899999999999999999998775
No 44
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.69 E-value=1.9e-07 Score=91.98 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=21.7
Q ss_pred ceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 85 QIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 85 qIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
+|+++|+.++||||+++++.+..|
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~ 25 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEI 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHcCCc
Confidence 689999999999999999987664
No 45
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.68 E-value=9.8e-08 Score=97.42 Aligned_cols=28 Identities=25% Similarity=0.360 Sum_probs=24.2
Q ss_pred CCCCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 81 IQLPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 81 i~lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
...++|+|+|+.++|||||++++++..|
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~ 42 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQS 42 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC-
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3468999999999999999999998875
No 46
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.67 E-value=1.1e-07 Score=93.53 Aligned_cols=25 Identities=32% Similarity=0.546 Sum_probs=22.6
Q ss_pred CceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 84 PQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 84 PqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
.+|+++|+.++||||+++++.+..|
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~ 28 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTF 28 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4799999999999999999998765
No 47
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.67 E-value=2.6e-08 Score=119.58 Aligned_cols=40 Identities=28% Similarity=0.319 Sum_probs=32.4
Q ss_pred CCCceEEeCcCCCChhhHHhhhcCCCcC--cccccccccCce
Q psy5059 82 QLPQIVVVGTQSSGKSSVIESLVGKSFL--PRGIGIVTRRPL 121 (1036)
Q Consensus 82 ~lPqIvVvG~QSsGKSSlLEal~G~~fl--Prg~G~cTR~Pl 121 (1036)
..|.|+|+|..|+|||||+++|+|..+. +.+...+|.+.+
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~ 105 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFV 105 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEE
Confidence 4699999999999999999999999874 466665664433
No 48
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.67 E-value=2.6e-08 Score=103.78 Aligned_cols=64 Identities=13% Similarity=0.059 Sum_probs=40.7
Q ss_pred hhccccCCceEEEEecccccCCCchhhhhhcCcccccccccccccchHHHHHHHHHHhhccCCCcceeeeecccchhhhH
Q psy5059 373 KETDVDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKLDVDGRRTYIEAQIKQLVLHYISNPNSIILAVVTANTDMATS 452 (1036)
Q Consensus 373 ~~~d~~g~rti~VitK~Dl~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~v~~~i~~~~~ipla~ISA~td~~~q 452 (1036)
....+.+.+.|.|+||+|+.+...-. ..... .+......+...+||+++.++.
T Consensus 111 ~~~~~~~~piilv~nK~Dl~~~~~~~--------------------------~~~~~-~~~~~~~~~~~~~Sa~~g~gv~ 163 (218)
T 4djt_A 111 QAVVGNEAPIVVCANKIDIKNRQKIS--------------------------KKLVM-EVLKGKNYEYFEISAKTAHNFG 163 (218)
T ss_dssp HHHHCSSSCEEEEEECTTCC----CC--------------------------HHHHH-HHTTTCCCEEEEEBTTTTBTTT
T ss_pred HHhcCCCCCEEEEEECCCCccccccC--------------------------HHHHH-HHHHHcCCcEEEEecCCCCCHH
Confidence 33345578999999999997542111 01122 2223344678899999999999
Q ss_pred HHHHHhhhcCc
Q psy5059 453 ESLKLAKETDV 463 (1036)
Q Consensus 453 eil~la~~vd~ 463 (1036)
+++....+.-.
T Consensus 164 ~l~~~l~~~~~ 174 (218)
T 4djt_A 164 LPFLHLARIFT 174 (218)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99988765533
No 49
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.66 E-value=1.3e-07 Score=94.37 Aligned_cols=26 Identities=23% Similarity=0.551 Sum_probs=23.8
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
..+|+|+|+.++||||+++++.+..|
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~~ 40 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKKF 40 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCC
Confidence 57899999999999999999998775
No 50
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.66 E-value=7.6e-08 Score=102.53 Aligned_cols=27 Identities=33% Similarity=0.549 Sum_probs=24.8
Q ss_pred CCCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 82 QLPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 82 ~lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
..++|+++|..++|||||+++|+|..+
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCc
Confidence 457999999999999999999999885
No 51
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.66 E-value=1.4e-07 Score=95.92 Aligned_cols=27 Identities=19% Similarity=0.445 Sum_probs=24.1
Q ss_pred CCCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 82 QLPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 82 ~lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
.-.+|+++|+.++|||||++++.+..|
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~ 41 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEV 41 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSC
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCC
Confidence 357999999999999999999998764
No 52
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.65 E-value=2.6e-08 Score=98.57 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=22.1
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
..+|+++|+.++|||||++++.|..+
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC--
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccc
Confidence 45899999999999999999998763
No 53
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.65 E-value=5.1e-08 Score=114.95 Aligned_cols=23 Identities=30% Similarity=0.715 Sum_probs=19.3
Q ss_pred ceEEeCcCCCChhhHHhhhcCCC
Q psy5059 85 QIVVVGTQSSGKSSVIESLVGKS 107 (1036)
Q Consensus 85 qIvVvG~QSsGKSSlLEal~G~~ 107 (1036)
+|+++|.+|+|||||+++|+|.+
T Consensus 235 kV~ivG~~nvGKSSLln~L~~~~ 257 (476)
T 3gee_A 235 STVIAGKPNAGKSTLLNTLLGQE 257 (476)
T ss_dssp EEEEECCTTSSHHHHHHHCC---
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 59999999999999999999875
No 54
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.65 E-value=1.1e-07 Score=94.99 Aligned_cols=25 Identities=40% Similarity=0.594 Sum_probs=23.0
Q ss_pred CceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 84 PQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 84 PqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
.+|+|+|+.++|||||++++++..|
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~ 39 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSF 39 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC
Confidence 5899999999999999999998775
No 55
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.65 E-value=1.4e-07 Score=97.96 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=23.4
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
.++|+++|+.++|||||++++++..|
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~~ 32 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQY 32 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 47899999999999999999998775
No 56
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.65 E-value=1.4e-07 Score=95.54 Aligned_cols=27 Identities=19% Similarity=0.445 Sum_probs=23.8
Q ss_pred CCCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 82 QLPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 82 ~lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
...+|+|+|+.++|||||++++.+..|
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~ 46 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEV 46 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSC
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC
Confidence 456899999999999999999998774
No 57
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.64 E-value=1.5e-07 Score=95.67 Aligned_cols=27 Identities=22% Similarity=0.534 Sum_probs=24.1
Q ss_pred CCCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 82 QLPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 82 ~lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
..++|+++|++++|||||++++.|..|
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~ 41 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDI 41 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCC
Confidence 457999999999999999999998753
No 58
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.64 E-value=7.2e-08 Score=95.39 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=23.2
Q ss_pred CceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 84 PQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 84 PqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
.+|+|+|+.++||||+++++.|..|
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~ 31 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDSF 31 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCC
Confidence 5899999999999999999998875
No 59
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.63 E-value=2.2e-07 Score=93.75 Aligned_cols=25 Identities=32% Similarity=0.655 Sum_probs=22.6
Q ss_pred CceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 84 PQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 84 PqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
.+|+++|+.++|||||+++|+|..+
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~ 29 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREA 29 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 4799999999999999999998763
No 60
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.63 E-value=1.1e-07 Score=93.80 Aligned_cols=25 Identities=32% Similarity=0.499 Sum_probs=22.6
Q ss_pred CceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 84 PQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 84 PqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
.+|+++|+.++||||+++++.+..|
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~ 28 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIF 28 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4799999999999999999998764
No 61
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.63 E-value=1.2e-07 Score=95.18 Aligned_cols=28 Identities=25% Similarity=0.521 Sum_probs=24.2
Q ss_pred CCCCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 81 IQLPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 81 i~lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
....+|+|+|+.++|||||+++|.+..|
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~ 43 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEF 43 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCC
Confidence 3456899999999999999999998775
No 62
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.63 E-value=1.4e-07 Score=96.85 Aligned_cols=28 Identities=25% Similarity=0.521 Sum_probs=25.0
Q ss_pred CCCCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 81 IQLPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 81 i~lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
...++|+|+|+.++|||||++++.+..|
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~ 39 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEF 39 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCC
Confidence 4567999999999999999999998775
No 63
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.63 E-value=1.8e-07 Score=94.97 Aligned_cols=29 Identities=31% Similarity=0.434 Sum_probs=25.6
Q ss_pred CCCceEEeCcCCCChhhHHhhhcCCCcCc
Q psy5059 82 QLPQIVVVGTQSSGKSSVIESLVGKSFLP 110 (1036)
Q Consensus 82 ~lPqIvVvG~QSsGKSSlLEal~G~~flP 110 (1036)
...+|+|+|+.++|||||+++|+|..|.+
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~ 34 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHE 34 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCC
Confidence 35689999999999999999999998643
No 64
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.62 E-value=1.9e-07 Score=94.24 Aligned_cols=26 Identities=31% Similarity=0.663 Sum_probs=23.8
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
..+|+|+|+.++|||||++++.+..|
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~~ 35 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKKF 35 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCC
Confidence 47899999999999999999998775
No 65
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.62 E-value=1.1e-07 Score=95.07 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=24.1
Q ss_pred CCCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 82 QLPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 82 ~lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
..++|+|+|+.++|||||++++.|..|
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~ 34 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYF 34 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcC
Confidence 346899999999999999999998765
No 66
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.62 E-value=1.8e-07 Score=94.51 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=23.8
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
..+|+|+|+.++|||||++++.+..|
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~~ 36 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGKF 36 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46899999999999999999998775
No 67
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.62 E-value=6.2e-08 Score=98.65 Aligned_cols=27 Identities=22% Similarity=0.497 Sum_probs=24.2
Q ss_pred CCCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 82 QLPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 82 ~lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
...+|+|+|+.++|||||++++++..|
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~ 45 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRF 45 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCC
Confidence 457999999999999999999998775
No 68
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.62 E-value=2e-07 Score=95.83 Aligned_cols=26 Identities=31% Similarity=0.686 Sum_probs=23.8
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
..+|+|+|+.++|||||+++|+|..|
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~ 33 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKKF 33 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCC
Confidence 46899999999999999999998875
No 69
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.62 E-value=1.2e-07 Score=102.94 Aligned_cols=26 Identities=23% Similarity=0.512 Sum_probs=23.6
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
.++|+++|.+++|||||+++|+|..+
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~ 30 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQ 30 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCE
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCC
Confidence 36899999999999999999999774
No 70
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.62 E-value=1e-07 Score=96.11 Aligned_cols=25 Identities=36% Similarity=0.592 Sum_probs=22.8
Q ss_pred CceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 84 PQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 84 PqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
.+|+++|+.++|||||+++|.+..|
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~~ 29 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNHF 29 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC
Confidence 4799999999999999999998775
No 71
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.62 E-value=1.5e-07 Score=93.22 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=23.5
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
..+|+|+|+.++||||+++++.+..|
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~ 31 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENKF 31 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCC
Confidence 35899999999999999999998775
No 72
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.61 E-value=1.9e-07 Score=92.98 Aligned_cols=26 Identities=31% Similarity=0.502 Sum_probs=22.5
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
.++|+++|+.++|||||++++.|..|
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~ 29 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQE 29 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC--
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCC
Confidence 46899999999999999999998774
No 73
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.61 E-value=8.5e-08 Score=98.12 Aligned_cols=26 Identities=27% Similarity=0.488 Sum_probs=23.7
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
..+|+|+|+.++|||||++++.+..|
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~~ 48 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDHF 48 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCC
Confidence 46899999999999999999998775
No 74
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.61 E-value=1.6e-07 Score=95.56 Aligned_cols=26 Identities=19% Similarity=0.519 Sum_probs=23.7
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
..+|+++|+.++|||||+++|.+..|
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~~ 41 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDTY 41 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCC
Confidence 46899999999999999999998765
No 75
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.61 E-value=2.9e-07 Score=93.10 Aligned_cols=26 Identities=15% Similarity=0.542 Sum_probs=23.1
Q ss_pred CCCceEEeCcCCCChhhHHhhhcCCC
Q psy5059 82 QLPQIVVVGTQSSGKSSVIESLVGKS 107 (1036)
Q Consensus 82 ~lPqIvVvG~QSsGKSSlLEal~G~~ 107 (1036)
...+|+++|+.++||||+++++.|..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34789999999999999999998765
No 76
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.60 E-value=2.5e-07 Score=94.24 Aligned_cols=26 Identities=23% Similarity=0.471 Sum_probs=23.3
Q ss_pred CCCceEEeCcCCCChhhHHhhhcCCC
Q psy5059 82 QLPQIVVVGTQSSGKSSVIESLVGKS 107 (1036)
Q Consensus 82 ~lPqIvVvG~QSsGKSSlLEal~G~~ 107 (1036)
...+|+|+|+.++|||||+++++|..
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCC
Confidence 35799999999999999999999876
No 77
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.59 E-value=2.8e-07 Score=92.08 Aligned_cols=27 Identities=26% Similarity=0.583 Sum_probs=24.0
Q ss_pred CCCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 82 QLPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 82 ~lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
..++|+|+|+.++|||||+++|.|..|
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~ 34 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTF 34 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC-
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCC
Confidence 468999999999999999999998775
No 78
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.59 E-value=1.5e-07 Score=103.07 Aligned_cols=25 Identities=28% Similarity=0.662 Sum_probs=23.0
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCC
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKS 107 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~ 107 (1036)
.++|+++|++++|||||+++|+|..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC
Confidence 4689999999999999999999876
No 79
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.59 E-value=2.5e-07 Score=92.50 Aligned_cols=26 Identities=35% Similarity=0.572 Sum_probs=23.1
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
..+|+|+|++++|||||++++.+..|
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~~ 31 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQETF 31 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGGT
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCcC
Confidence 36899999999999999999987764
No 80
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.58 E-value=2.3e-07 Score=92.66 Aligned_cols=25 Identities=28% Similarity=0.624 Sum_probs=22.9
Q ss_pred CceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 84 PQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 84 PqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
++|+++|+.++|||||+++|+|..|
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCe
Confidence 5799999999999999999998764
No 81
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.58 E-value=2.6e-07 Score=91.33 Aligned_cols=25 Identities=28% Similarity=0.571 Sum_probs=23.1
Q ss_pred CceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 84 PQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 84 PqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
.+|+|+|+.++||||+++++.|..|
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~ 28 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKF 28 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCC
Confidence 5799999999999999999998775
No 82
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.57 E-value=3.2e-07 Score=90.48 Aligned_cols=26 Identities=38% Similarity=0.525 Sum_probs=23.2
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
..+|+|+|+.++||||+++++.+..|
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~~ 30 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGIF 30 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCC
Confidence 35899999999999999999998764
No 83
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.57 E-value=3.1e-07 Score=92.07 Aligned_cols=26 Identities=31% Similarity=0.556 Sum_probs=23.5
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
..+|+|+|+.++||||+++++.+..|
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~~~ 37 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKDQF 37 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCC
Confidence 46899999999999999999998775
No 84
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.57 E-value=3.9e-07 Score=94.08 Aligned_cols=27 Identities=26% Similarity=0.566 Sum_probs=24.1
Q ss_pred CCCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 82 QLPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 82 ~lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
..++|+|+|+.++|||||++++.|..|
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~ 45 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKF 45 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCC
Confidence 467999999999999999999998775
No 85
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.56 E-value=1.6e-07 Score=102.34 Aligned_cols=27 Identities=26% Similarity=0.516 Sum_probs=24.4
Q ss_pred CCCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 82 QLPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 82 ~lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
..++|+++|.+++|||||+++|+|..+
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCE
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCc
Confidence 357899999999999999999999874
No 86
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.56 E-value=3.3e-07 Score=93.40 Aligned_cols=26 Identities=19% Similarity=0.549 Sum_probs=23.9
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
..+|+|+|+.++|||||+++|.+..|
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~ 50 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNEF 50 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCC
Confidence 57899999999999999999998775
No 87
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.56 E-value=1.6e-07 Score=94.51 Aligned_cols=27 Identities=19% Similarity=0.363 Sum_probs=23.6
Q ss_pred CCCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 82 QLPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 82 ~lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
.-.+|+++|+.++|||||++++.+..|
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~ 43 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEV 43 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCc
Confidence 357999999999999999999987653
No 88
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.56 E-value=1e-07 Score=97.26 Aligned_cols=26 Identities=23% Similarity=0.530 Sum_probs=23.8
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
..+|+|+|+.++|||||++++++..|
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~~ 48 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDTF 48 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCCC
Confidence 57999999999999999999998765
No 89
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.56 E-value=1.8e-07 Score=96.26 Aligned_cols=27 Identities=33% Similarity=0.498 Sum_probs=23.9
Q ss_pred CCCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 82 QLPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 82 ~lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
...+|+|+|+.++|||||++++++..|
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~ 53 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEF 53 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCC
Confidence 357999999999999999999998775
No 90
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.56 E-value=1e-07 Score=112.47 Aligned_cols=25 Identities=28% Similarity=0.554 Sum_probs=22.9
Q ss_pred CceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 84 PQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 84 PqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
++|+++|.+|+||||||++|+|.++
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~ 268 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDR 268 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTB
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCC
Confidence 6899999999999999999998763
No 91
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.56 E-value=4.2e-07 Score=92.33 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=23.2
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
-.+|+|+|+.++||||+++++.+..|
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~~~~ 47 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHLGDV 47 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCC
Confidence 57899999999999999999987654
No 92
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.55 E-value=6.5e-07 Score=102.09 Aligned_cols=27 Identities=41% Similarity=0.656 Sum_probs=22.9
Q ss_pred CCCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 82 QLPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 82 ~lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
..|.|+++|..|+|||||+++|+|..+
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~ 204 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQ 204 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC--
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCc
Confidence 467899999999999999999998864
No 93
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.55 E-value=2.4e-07 Score=91.35 Aligned_cols=25 Identities=32% Similarity=0.545 Sum_probs=22.8
Q ss_pred CceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 84 PQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 84 PqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
.+|+++|++++||||+++++.+..|
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~ 31 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQF 31 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCC
Confidence 5799999999999999999998764
No 94
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.55 E-value=2.8e-07 Score=94.53 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=23.3
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
-.+|+|+|+.++|||||++++.+..|
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~~~ 54 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLGEI 54 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSSCC
T ss_pred ccEEEEECCCCCCHHHHHHHHHhCCc
Confidence 46899999999999999999987664
No 95
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.55 E-value=4.4e-07 Score=93.26 Aligned_cols=26 Identities=31% Similarity=0.554 Sum_probs=24.0
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
..+|+|+|+.++|||||++++.+..|
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~ 33 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSF 33 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46899999999999999999998875
No 96
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.55 E-value=3e-07 Score=89.99 Aligned_cols=25 Identities=36% Similarity=0.567 Sum_probs=22.7
Q ss_pred CceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 84 PQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 84 PqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
.+|+++|+.++||||+++++.+..|
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~ 28 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHF 28 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC
Confidence 3799999999999999999998775
No 97
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.55 E-value=1e-07 Score=94.14 Aligned_cols=25 Identities=32% Similarity=0.622 Sum_probs=22.8
Q ss_pred CceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 84 PQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 84 PqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
.+|+++|+.++||||+++++.+..|
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~ 28 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDF 28 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4799999999999999999998775
No 98
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.54 E-value=3.5e-07 Score=92.88 Aligned_cols=28 Identities=32% Similarity=0.503 Sum_probs=24.4
Q ss_pred CCCCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 81 IQLPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 81 i~lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
..-.+|+++|+.++||||++++|++..|
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~ 46 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHF 46 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCC
Confidence 3446899999999999999999998765
No 99
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.53 E-value=3.2e-07 Score=95.40 Aligned_cols=26 Identities=19% Similarity=0.468 Sum_probs=24.0
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
..+|+|+|+.++|||||+++|++..|
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~~~ 50 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDNKF 50 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSCC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCC
Confidence 46899999999999999999999876
No 100
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.52 E-value=5.1e-07 Score=90.77 Aligned_cols=26 Identities=35% Similarity=0.494 Sum_probs=23.2
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
.++|+++|+.++|||||++++.+..|
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~~ 31 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQF 31 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCC
Confidence 46899999999999999999996664
No 101
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.52 E-value=3.3e-07 Score=94.40 Aligned_cols=27 Identities=26% Similarity=0.551 Sum_probs=24.5
Q ss_pred CCCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 82 QLPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 82 ~lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
...+|+++|+.++|||||+++|++..|
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~ 49 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEF 49 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCC
Confidence 457899999999999999999998875
No 102
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.52 E-value=2.6e-07 Score=91.48 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=22.1
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
+.+|+++|+.++|||||+++++|..+
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~ 27 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQG 27 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC--
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccC
Confidence 45899999999999999999998763
No 103
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.52 E-value=3.8e-07 Score=92.76 Aligned_cols=26 Identities=27% Similarity=0.522 Sum_probs=23.8
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
..+|+|+|+.++|||||+++++|..|
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~ 47 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSF 47 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC
Confidence 46899999999999999999998775
No 104
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.52 E-value=3.8e-07 Score=107.83 Aligned_cols=66 Identities=15% Similarity=0.070 Sum_probs=44.5
Q ss_pred hhccccCCceEEEEecccccCCCchhhhhhcCcccccccccccccchHHHHHHHHHHhhccCCCcceeeeecccchhhhH
Q psy5059 373 KETDVDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKLDVDGRRTYIEAQIKQLVLHYISNPNSIILAVVTANTDMATS 452 (1036)
Q Consensus 373 ~~~d~~g~rti~VitK~Dl~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~v~~~i~~~~~ipla~ISA~td~~~q 452 (1036)
+.....+.+.|.|+||+|+.+.... ..+...+..........+...+||+++.++.
T Consensus 417 ~~~~~~~~p~ilv~NK~Dl~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 472 (497)
T 3lvq_E 417 NDREMRDAIILIFANKQDLPDAMKP------------------------HEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 472 (497)
T ss_dssp TSGGGTTCEEEEEEECCSSSSCCCH------------------------HHHHHHTTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred hhhhcCCCcEEEEEECCCCCcCCCH------------------------HHHHHHhchhhhhcCCeEEEEEECCCCCCHH
Confidence 3344568899999999999764321 2223333323333456678899999999999
Q ss_pred HHHHHhhhcC
Q psy5059 453 ESLKLAKETD 462 (1036)
Q Consensus 453 eil~la~~vd 462 (1036)
++++...+.-
T Consensus 473 ~l~~~l~~~~ 482 (497)
T 3lvq_E 473 EGLTWLTSNY 482 (497)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 9998875553
No 105
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.52 E-value=5.1e-07 Score=93.33 Aligned_cols=26 Identities=35% Similarity=0.594 Sum_probs=23.5
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
..+|+++|+.++|||||++++.+..|
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~~ 54 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGAF 54 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCCC
Confidence 57899999999999999999987764
No 106
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.51 E-value=2.3e-07 Score=107.72 Aligned_cols=63 Identities=14% Similarity=0.055 Sum_probs=43.2
Q ss_pred HhhhccccCCceEEEEecccccCCCchhhhhhcCcccccccccccccchHHHHHHHHHHhhccCCCcceeeeecccchhh
Q psy5059 371 LAKETDVDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKLDVDGRRTYIEAQIKQLVLHYISNPNSIILAVVTANTDMA 450 (1036)
Q Consensus 371 la~~~d~~g~rti~VitK~Dl~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~v~~~i~~~~~ipla~ISA~td~~ 450 (1036)
+..++...+.+.|.|+||+|+.+..... ....+......+...+||+++.+
T Consensus 132 ~l~~l~~~~~piIvV~NK~Dl~~~~~~~-----------------------------~~~~l~~~~g~~v~~vSAktg~g 182 (423)
T 3qq5_A 132 VVNLFKEMEIPFVVVVNKIDVLGEKAEE-----------------------------LKGLYESRYEAKVLLVSALQKKG 182 (423)
T ss_dssp HHHHHHHTTCCEEEECCCCTTTTCCCTH-----------------------------HHHHSSCCTTCCCCCCSSCCTTS
T ss_pred HHHHHHhcCCCEEEEEeCcCCCCccHHH-----------------------------HHHHHHHHcCCCEEEEECCCCCC
Confidence 3344444488999999999998764331 11222333335778899999999
Q ss_pred hHHHHHHhhhcC
Q psy5059 451 TSESLKLAKETD 462 (1036)
Q Consensus 451 ~qeil~la~~vd 462 (1036)
+.++++...+.-
T Consensus 183 I~eL~~~L~~~l 194 (423)
T 3qq5_A 183 FDDIGKTISEIL 194 (423)
T ss_dssp TTTHHHHHHHHS
T ss_pred HHHHHHHHHHhh
Confidence 999998876654
No 107
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.51 E-value=5.5e-07 Score=90.65 Aligned_cols=27 Identities=33% Similarity=0.448 Sum_probs=23.7
Q ss_pred CCCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 82 QLPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 82 ~lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
...+|+++|+.++|||||++++.+..|
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~~ 43 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKIF 43 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC
Confidence 446899999999999999999997764
No 108
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.51 E-value=3.5e-07 Score=94.37 Aligned_cols=27 Identities=19% Similarity=0.464 Sum_probs=22.6
Q ss_pred CCCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 82 QLPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 82 ~lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
.-.+|+++|+.++||||++++++|..|
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~ 50 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRL 50 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC--
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 346899999999999999999988664
No 109
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.50 E-value=3e-07 Score=93.82 Aligned_cols=26 Identities=27% Similarity=0.545 Sum_probs=23.6
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
..+|+|+|+.++|||||++++.+..|
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~ 46 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKRF 46 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCC
Confidence 45899999999999999999998775
No 110
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.50 E-value=3.1e-07 Score=94.80 Aligned_cols=26 Identities=27% Similarity=0.645 Sum_probs=21.8
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
..+|+|+|+.++|||||++++.+..|
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~ 50 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIENKF 50 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC---
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCC
Confidence 57999999999999999999998764
No 111
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.49 E-value=3.3e-07 Score=98.72 Aligned_cols=26 Identities=27% Similarity=0.505 Sum_probs=23.8
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
-.+|+++|..++||||++++|+|..+
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSCC
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCCC
Confidence 45899999999999999999999875
No 112
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.49 E-value=6.7e-07 Score=91.84 Aligned_cols=25 Identities=36% Similarity=0.594 Sum_probs=22.2
Q ss_pred CCCceEEeCcCCCChhhHHhhhcCC
Q psy5059 82 QLPQIVVVGTQSSGKSSVIESLVGK 106 (1036)
Q Consensus 82 ~lPqIvVvG~QSsGKSSlLEal~G~ 106 (1036)
...+|+++|+.++|||||++.+.|.
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhc
Confidence 4679999999999999999999874
No 113
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.49 E-value=5.3e-07 Score=91.44 Aligned_cols=26 Identities=27% Similarity=0.551 Sum_probs=23.7
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
..+|+|+|+.++|||||+++|.+..|
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~ 40 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTF 40 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCC
Confidence 46899999999999999999998775
No 114
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.49 E-value=1.2e-06 Score=90.30 Aligned_cols=26 Identities=19% Similarity=0.511 Sum_probs=23.6
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
..+|+|+|+.++|||||+++|.+..|
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~ 33 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDTY 33 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46899999999999999999998775
No 115
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.48 E-value=7.7e-07 Score=92.40 Aligned_cols=26 Identities=27% Similarity=0.534 Sum_probs=23.6
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
..+|+++|+.++|||||++++++..|
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~~ 51 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGLF 51 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCC
Confidence 46999999999999999999998765
No 116
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.48 E-value=4e-07 Score=93.25 Aligned_cols=26 Identities=15% Similarity=0.438 Sum_probs=22.9
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
-.+|+++|+.++||||+++++.+..|
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~ 48 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRL 48 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45899999999999999999998764
No 117
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.48 E-value=6e-07 Score=91.92 Aligned_cols=27 Identities=22% Similarity=0.458 Sum_probs=24.1
Q ss_pred CCCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 82 QLPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 82 ~lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
...+|+|+|+.++|||||++++++..|
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~ 53 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRF 53 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC
Confidence 346899999999999999999998775
No 118
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.47 E-value=6.8e-07 Score=97.21 Aligned_cols=42 Identities=24% Similarity=0.488 Sum_probs=31.2
Q ss_pred hhhHHHHHHHHHhhhhcCCCCCCCCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 60 RTAAAVINKLQDVFNTVGTDAIQLPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 60 ~~~~~l~~kL~~~~~~~g~~~i~lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
+.+.+++.++.. ....-++|+|+|..++||||++++|+|..+
T Consensus 23 ~~l~~~~~~~~~-------~~~~~~~I~vvG~~g~GKSSLin~l~~~~~ 64 (270)
T 1h65_A 23 TKLLELLGNLKQ-------EDVNSLTILVMGKGGVGKSSTVNSIIGERV 64 (270)
T ss_dssp HHHHHHHHHHHH-------TTCCEEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHhh-------cCCCCeEEEEECCCCCCHHHHHHHHhCCCc
Confidence 344455555553 113357999999999999999999999875
No 119
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.47 E-value=3.5e-07 Score=102.76 Aligned_cols=62 Identities=16% Similarity=0.094 Sum_probs=42.4
Q ss_pred ccccCCceEEEEecccccCCCchhhhhhcCcccccccccccccchHHHHHHHHHHhhccCCCcceeeeecccchhhhHHH
Q psy5059 375 TDVDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKLDVDGRRTYIEAQIKQLVLHYISNPNSIILAVVTANTDMATSES 454 (1036)
Q Consensus 375 ~d~~g~rti~VitK~Dl~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~v~~~i~~~~~ipla~ISA~td~~~qei 454 (1036)
....+.+.|.|+||+|+.+.... ..+...+..........+...+||+++.++.++
T Consensus 262 ~~~~~~piilV~NK~Dl~~~~~~------------------------~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el 317 (329)
T 3o47_A 262 DELRDAVLLVFANKQDLPNAMNA------------------------AEITDKLGLHSLRHRNWYIQATCATSGDGLYEG 317 (329)
T ss_dssp GGGTTCEEEEEEECTTSTTCCCH------------------------HHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHH
T ss_pred hccCCCeEEEEEECccCCcccCH------------------------HHHHHHhchhhhhcCCCEEEEEECCCCcCHHHH
Confidence 34457889999999999765321 223333333333345568889999999999999
Q ss_pred HHHhhh
Q psy5059 455 LKLAKE 460 (1036)
Q Consensus 455 l~la~~ 460 (1036)
+....+
T Consensus 318 ~~~l~~ 323 (329)
T 3o47_A 318 LDWLSN 323 (329)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877543
No 120
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.46 E-value=6.4e-07 Score=91.29 Aligned_cols=26 Identities=35% Similarity=0.485 Sum_probs=23.4
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
..+|+++|+.++|||||+++|++..|
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~~~ 33 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKGTF 33 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred eeEEEEECCCCCcHHHHHHHHHcCCC
Confidence 46899999999999999999998764
No 121
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.46 E-value=7.5e-07 Score=90.27 Aligned_cols=55 Identities=22% Similarity=0.160 Sum_probs=39.1
Q ss_pred ccCCceEEEEecccccCCCchhhhhhcCcccccccccccccchHHHHHHHHHHhhccCCCcceeeeecccchhhhHHHHH
Q psy5059 377 VDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKLDVDGRRTYIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLK 456 (1036)
Q Consensus 377 ~~g~rti~VitK~Dl~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~v~~~i~~~~~ipla~ISA~td~~~qeil~ 456 (1036)
..+.+.|.|+||+|+.+.-+. ..+..+.......+...+||+++.++.+++.
T Consensus 133 ~~~~piilv~NK~Dl~~~~~~----------------------------~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 184 (198)
T 3t1o_A 133 LDDVPIVIQVNKRDLPDALPV----------------------------EMVRAVVDPEGKFPVLEAVATEGKGVFETLK 184 (198)
T ss_dssp TTSSCEEEEEECTTSTTCCCH----------------------------HHHHHHHCTTCCSCEEECBGGGTBTHHHHHH
T ss_pred cCCCCEEEEEEchhcccccCH----------------------------HHHHHHHHhcCCceEEEEecCCCcCHHHHHH
Confidence 357889999999999764221 1233344444444788899999999999987
Q ss_pred Hhh
Q psy5059 457 LAK 459 (1036)
Q Consensus 457 la~ 459 (1036)
...
T Consensus 185 ~l~ 187 (198)
T 3t1o_A 185 EVS 187 (198)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 122
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.45 E-value=3.2e-07 Score=94.10 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=5.4
Q ss_pred CceEEeCcCCCChhhHHhhhcCC
Q psy5059 84 PQIVVVGTQSSGKSSVIESLVGK 106 (1036)
Q Consensus 84 PqIvVvG~QSsGKSSlLEal~G~ 106 (1036)
.+|+|+|+.++|||||++++.+.
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 58999999999999999999877
No 123
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.45 E-value=2.5e-07 Score=93.22 Aligned_cols=26 Identities=23% Similarity=0.510 Sum_probs=10.8
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
..+|+++|+.++|||||++++++..|
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~~ 33 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDAF 33 (183)
T ss_dssp EEEEEEECCCCC--------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC
Confidence 46899999999999999999987654
No 124
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.44 E-value=2.8e-07 Score=104.18 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=22.8
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCC
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKS 107 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~ 107 (1036)
+|.|+++|.+|+||||||++|++..
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~ 182 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAK 182 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEEC
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCC
Confidence 5789999999999999999998754
No 125
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.43 E-value=1.1e-07 Score=97.77 Aligned_cols=26 Identities=19% Similarity=0.519 Sum_probs=23.5
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
..+|+|+|+.++|||||+++|++..|
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~~~~~ 58 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFADDTY 58 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSBCCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46899999999999999999998764
No 126
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.41 E-value=1.1e-06 Score=104.95 Aligned_cols=33 Identities=9% Similarity=-0.062 Sum_probs=26.2
Q ss_pred hhccCCCcceeeeecccchhhhHHHHHHhhhcC
Q psy5059 430 HYISNPNSIILAVVTANTDMATSESLKLAKETD 462 (1036)
Q Consensus 430 ~~i~~~~~ipla~ISA~td~~~qeil~la~~vd 462 (1036)
..+..-...|+.++||+++.+++++++...+.-
T Consensus 243 ~~~~~~~~~PV~~gSA~~~~GV~~Lld~i~~~~ 275 (528)
T 3tr5_A 243 EGYLKGELTPIFFGSAINNFGVGELLDAFVKEA 275 (528)
T ss_dssp HHHHTTSEEEEEECBGGGTBSHHHHHHHHHHHS
T ss_pred HHHhcCceeEEEeccccCCccHHHHHHHHHHhC
Confidence 334455677999999999999999998876653
No 127
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.41 E-value=8.4e-07 Score=89.69 Aligned_cols=27 Identities=26% Similarity=0.571 Sum_probs=24.1
Q ss_pred CCCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 82 QLPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 82 ~lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
.-++|+++|+.++|||||+++|+|..+
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~ 32 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENV 32 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 457899999999999999999998764
No 128
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.39 E-value=2.1e-06 Score=100.19 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=22.8
Q ss_pred CCCceEEeCcCCCChhhHHhhhcCCC
Q psy5059 82 QLPQIVVVGTQSSGKSSVIESLVGKS 107 (1036)
Q Consensus 82 ~lPqIvVvG~QSsGKSSlLEal~G~~ 107 (1036)
....|+++|..++|||||+++|++..
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~ 41 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLT 41 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999997654
No 129
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.39 E-value=6e-07 Score=90.19 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=22.7
Q ss_pred CceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 84 PQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 84 PqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
.+|+++|+.++|||||++++.+..|
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~~ 30 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNAF 30 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCC
Confidence 5799999999999999999987764
No 130
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.38 E-value=7.6e-07 Score=92.93 Aligned_cols=25 Identities=28% Similarity=0.558 Sum_probs=21.0
Q ss_pred CceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 84 PQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 84 PqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
.+|+++|+.++|||||++++.+..|
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~~~ 59 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADGAF 59 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC---
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCC
Confidence 5899999999999999999998764
No 131
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.38 E-value=2.3e-07 Score=96.14 Aligned_cols=27 Identities=33% Similarity=0.476 Sum_probs=23.3
Q ss_pred CCCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 82 QLPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 82 ~lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
.-.+|+++|+.++||||+++++++..|
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~ 55 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAF 55 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCC
Confidence 346899999999999999999987664
No 132
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.38 E-value=6.6e-07 Score=91.34 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=23.6
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
..+|+++|+.++|||||++++.+..|
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~~ 48 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGEI 48 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCC
Confidence 46899999999999999999998775
No 133
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.37 E-value=9.3e-07 Score=90.65 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=21.8
Q ss_pred CCCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 82 QLPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 82 ~lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
...+|+++|+.++|||||++++.+..|
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~~ 45 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNGY 45 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC---
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCC
Confidence 457899999999999999999998764
No 134
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.36 E-value=3.9e-06 Score=95.21 Aligned_cols=27 Identities=26% Similarity=0.662 Sum_probs=24.6
Q ss_pred CCCCceEEeCcCCCChhhHHhhhcCCC
Q psy5059 81 IQLPQIVVVGTQSSGKSSVIESLVGKS 107 (1036)
Q Consensus 81 i~lPqIvVvG~QSsGKSSlLEal~G~~ 107 (1036)
...+.|+++|..++||||++++|+|..
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999999999876
No 135
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.36 E-value=1.4e-06 Score=88.54 Aligned_cols=49 Identities=22% Similarity=0.321 Sum_probs=33.5
Q ss_pred hhhHHHHHHHHHhhhhcCC-CCCCCCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 60 RTAAAVINKLQDVFNTVGT-DAIQLPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 60 ~~~~~l~~kL~~~~~~~g~-~~i~lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
+.+-.+.+.+.+.+..... ..-..++|+++|..+|||||++++|+|..|
T Consensus 24 ~~~~~l~~~l~~~~~~~~~~~~~~~~~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 24 RKISQWREWIDEKLGGGSGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp TBCHHHHHHHHHHC--------CCCCEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3455666666665544332 234568999999999999999999998875
No 136
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.36 E-value=1.5e-06 Score=102.71 Aligned_cols=59 Identities=15% Similarity=0.151 Sum_probs=39.9
Q ss_pred cCCceEEEEecccccCCCchhhhhhcCcccccccccccccchHHHHHHHHHHhhccC---CCcceeeeecccchhhhHHH
Q psy5059 378 DGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKLDVDGRRTYIEAQIKQLVLHYISN---PNSIILAVVTANTDMATSES 454 (1036)
Q Consensus 378 ~g~rti~VitK~Dl~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~v~~~i~~---~~~ipla~ISA~td~~~qei 454 (1036)
.|.+.|.|+||+|+.++. .. +...+.+..++.. ....+...+||+++.++.++
T Consensus 124 ~~ip~IvviNK~Dl~~~~--~~----------------------~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L 179 (482)
T 1wb1_A 124 FNIPIIVVITKSDNAGTE--EI----------------------KRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDEL 179 (482)
T ss_dssp TTCCBCEEEECTTSSCHH--HH----------------------HHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHH
T ss_pred cCCCEEEEEECCCcccch--hH----------------------HHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHH
Confidence 477889999999998631 11 2223334443322 22568889999999999999
Q ss_pred HHHhhh
Q psy5059 455 LKLAKE 460 (1036)
Q Consensus 455 l~la~~ 460 (1036)
++...+
T Consensus 180 ~~~L~~ 185 (482)
T 1wb1_A 180 KNLIIT 185 (482)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877655
No 137
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.35 E-value=1.2e-06 Score=90.34 Aligned_cols=25 Identities=24% Similarity=0.538 Sum_probs=22.9
Q ss_pred CceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 84 PQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 84 PqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
.+|+++|+.++|||||++++.+..|
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~ 50 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQF 50 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC
Confidence 4899999999999999999998775
No 138
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.35 E-value=1.3e-06 Score=90.56 Aligned_cols=25 Identities=28% Similarity=0.542 Sum_probs=23.0
Q ss_pred CceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 84 PQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 84 PqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
.+|+++|+.++|||||++++.+..|
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~ 50 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDEF 50 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSC
T ss_pred cEEEEECcCCCCHHHHHHHHhcCCC
Confidence 5899999999999999999998764
No 139
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.34 E-value=7.2e-07 Score=92.38 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=23.3
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
..+|+++|+.++|||||++++.+..|
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~~ 34 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNKF 34 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46899999999999999999997764
No 140
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.34 E-value=6.7e-07 Score=89.63 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=23.0
Q ss_pred CceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 84 PQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 84 PqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
-+|+++|+.++|||||++++++..|
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~~ 32 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGSY 32 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC
Confidence 5799999999999999999998775
No 141
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.34 E-value=2.8e-06 Score=89.06 Aligned_cols=26 Identities=31% Similarity=0.598 Sum_probs=23.8
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
..+|+|+|+.++|||||+++|++..|
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~~ 38 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNEF 38 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCCC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCC
Confidence 46899999999999999999998775
No 142
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.33 E-value=2e-06 Score=88.77 Aligned_cols=68 Identities=10% Similarity=0.040 Sum_probs=42.8
Q ss_pred HhhhccccCCceEEEEecccccCCCchhhhhhcCcccccccccccccchHHHHHHHHHHhhccCCC-cceeeeecccchh
Q psy5059 371 LAKETDVDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKLDVDGRRTYIEAQIKQLVLHYISNPN-SIILAVVTANTDM 449 (1036)
Q Consensus 371 la~~~d~~g~rti~VitK~Dl~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~v~~~i~~~~-~ipla~ISA~td~ 449 (1036)
+...+...+.+.+.|.||+|+...|... .....+...+..+. .++...+||+.+.
T Consensus 129 ~~~~~~~~~~~~~~v~nK~D~~s~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~Sal~~~ 184 (210)
T 1pui_A 129 MIEWAVDSNIAVLVLLTKADKLASGARK------------------------AQLNMVREAVLAFNGDVQVETFSSLKKQ 184 (210)
T ss_dssp HHHHHHHTTCCEEEEEECGGGSCHHHHH------------------------HHHHHHHHHHGGGCSCEEEEECBTTTTB
T ss_pred HHHHHHHcCCCeEEEEecccCCCchhHH------------------------HHHHHHHHHHHhcCCCCceEEEeecCCC
Confidence 3344445678889999999988654221 00122233333332 3455678999999
Q ss_pred hhHHHHHHhhhcC
Q psy5059 450 ATSESLKLAKETD 462 (1036)
Q Consensus 450 ~~qeil~la~~vd 462 (1036)
+..++++...+.-
T Consensus 185 ~~~~l~~~l~~~~ 197 (210)
T 1pui_A 185 GVDKLRQKLDTWF 197 (210)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999998876653
No 143
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.31 E-value=2.5e-06 Score=86.90 Aligned_cols=26 Identities=23% Similarity=0.494 Sum_probs=23.4
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
.-+|+++|+.++|||||++++++..|
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~~ 46 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKRF 46 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCCC
Confidence 35899999999999999999998775
No 144
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.31 E-value=2.2e-06 Score=98.84 Aligned_cols=25 Identities=16% Similarity=0.244 Sum_probs=22.1
Q ss_pred CCCceEEeCcCCCChhhHHhhhcCC
Q psy5059 82 QLPQIVVVGTQSSGKSSVIESLVGK 106 (1036)
Q Consensus 82 ~lPqIvVvG~QSsGKSSlLEal~G~ 106 (1036)
....|+++|..++|||||+++|++.
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~ 34 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYV 34 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhh
Confidence 3468999999999999999999864
No 145
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.31 E-value=1.4e-06 Score=88.74 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=24.4
Q ss_pred CCCCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 81 IQLPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 81 i~lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
...-+|+++|+.++|||||++++++..|
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~ 45 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTY 45 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3446899999999999999999998775
No 146
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.31 E-value=3.8e-07 Score=107.12 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=21.9
Q ss_pred ceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 85 QIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 85 qIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
+|+++|.+++|||||+++|+|.++
T Consensus 226 kV~ivG~~nvGKSSLln~L~~~~~ 249 (462)
T 3geh_A 226 KVAIVGRPNVGKSSLLNAWSQSDR 249 (462)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHB
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCc
Confidence 599999999999999999998653
No 147
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.30 E-value=4.8e-07 Score=90.72 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=23.4
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
..+|+++|+.++||||+++++.+..|
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~~ 33 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNTF 33 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46899999999999999999997764
No 148
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.30 E-value=1.2e-06 Score=89.38 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=23.0
Q ss_pred CceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 84 PQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 84 PqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
.+|+++|+.++||||+++++.+..|
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~~ 43 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDAF 43 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5899999999999999999998765
No 149
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.29 E-value=3.7e-06 Score=97.02 Aligned_cols=57 Identities=11% Similarity=0.169 Sum_probs=40.1
Q ss_pred CceEEEEecccccCCCchhhhhhcCcccccccccccccchHHHHHHHHHHhhcc--CCCcceeeeecccchhhhHHHHHH
Q psy5059 380 RRTLAVVTKIDLMDAGTDAIDILCGRVIPVKLDVDGRRTYIEAQIKQLVLHYIS--NPNSIILAVVTANTDMATSESLKL 457 (1036)
Q Consensus 380 ~rti~VitK~Dl~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~v~~~i~--~~~~ipla~ISA~td~~~qeil~l 457 (1036)
++.|.|+||+|+.+...- ....+.+...+. .....++..+||+++.++.++++.
T Consensus 130 ~~iivviNK~Dl~~~~~~------------------------~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~ 185 (403)
T 3sjy_A 130 KNLIIVQNKVDVVSKEEA------------------------LSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEG 185 (403)
T ss_dssp CCEEEEEECGGGSCHHHH------------------------HHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHH
T ss_pred CCEEEEEECccccchHHH------------------------HHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHH
Confidence 478999999999864211 122233444443 234678999999999999999988
Q ss_pred hhh
Q psy5059 458 AKE 460 (1036)
Q Consensus 458 a~~ 460 (1036)
..+
T Consensus 186 l~~ 188 (403)
T 3sjy_A 186 IEE 188 (403)
T ss_dssp HHH
T ss_pred HHH
Confidence 766
No 150
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.28 E-value=2.9e-06 Score=87.40 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=23.2
Q ss_pred CCCceEEeCcCCCChhhHHhhhcCCC
Q psy5059 82 QLPQIVVVGTQSSGKSSVIESLVGKS 107 (1036)
Q Consensus 82 ~lPqIvVvG~QSsGKSSlLEal~G~~ 107 (1036)
...+|+++|+.++|||||+++++|..
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~ 47 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQ 47 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhcc
Confidence 34799999999999999999998765
No 151
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.28 E-value=2.1e-06 Score=104.19 Aligned_cols=26 Identities=27% Similarity=0.370 Sum_probs=23.3
Q ss_pred CCCceEEeCcCCCChhhHHhhhcCCC
Q psy5059 82 QLPQIVVVGTQSSGKSSVIESLVGKS 107 (1036)
Q Consensus 82 ~lPqIvVvG~QSsGKSSlLEal~G~~ 107 (1036)
...+|+++|..++|||||+++|++..
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~ 191 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDL 191 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCS
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhc
Confidence 35689999999999999999999765
No 152
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.27 E-value=6.5e-06 Score=94.05 Aligned_cols=141 Identities=13% Similarity=0.193 Sum_probs=68.0
Q ss_pred ccceeecCCCccccCCCCCchhHHHHHHHHHHHhhcCCCcEEEEEeccccccccchhhh-hhhhcCCCC---Ccccceec
Q psy5059 241 LNLTLVDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLK-LAKETDVDG---RRTLDLLD 316 (1036)
Q Consensus 241 ~~LtlVDLPGi~~~~~~~q~~di~~~ir~lv~~yI~~~n~IIL~V~~An~D~~~s~al~-l~r~~Dp~g---~RTigvl~ 316 (1036)
..+.|+|+||++..+..+. .... -+.+.++..+ +||.|++++..+..-+.+. -...+|... .+.+.+=-
T Consensus 119 ~~i~l~D~pGl~~~a~~~~--~~g~----~~l~~i~~ad-~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK 191 (376)
T 4a9a_A 119 AKIQMLDLPGIIDGAKDGR--GRGK----QVIAVARTCN-LLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKK 191 (376)
T ss_dssp EEEEEEECGGGCCC-------CHHH----HHHHHHHHCS-EEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEEE
T ss_pred cEEEEEeCCCccCCchhhh--HHHH----HHHHHHHhcC-ccccccccCccHHHHHHHHHHHHHhhHhhccCChhhhhhH
Confidence 4578999999986554322 1211 1334566667 5666666765433222111 111222211 11122223
Q ss_pred cCCCCcccccCCCCCchHHHHHHHHHHhhhcCCCceEEEEEecCccccchHHHHHhhhccccCCceEEEEecccccC
Q psy5059 317 IDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKETDVDGRRTLAVVTKIDLMD 393 (1036)
Q Consensus 317 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~v~~~~d~~~~~~~~la~~~d~~g~rti~VitK~Dl~~ 393 (1036)
.|..|+.-.........-+..++.+...|.-....++. + +|. .-++...........+.++|.|.||+|...
T Consensus 192 ~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kpv~~-~--~nv--~eddl~d~~~~~~~~~~p~i~v~nKid~~~ 263 (376)
T 4a9a_A 192 KEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEIAF-R--CDA--TVDDLIDVLEASSRRYMPAIYVLNKIDSLS 263 (376)
T ss_dssp CSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEEEEE-C--SCC--CHHHHHHHHTTTTCEEECEEEEEECGGGSC
T ss_pred hhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCCeee-c--ccC--CHHHHHHHHHHHHhhccceEEEEecccccC
Confidence 45555433322222222345667777776544333222 2 222 223334455555667789999999999764
No 153
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.27 E-value=1.3e-06 Score=103.22 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=22.3
Q ss_pred CCCceEEeCcCCCChhhHHhhhcCC
Q psy5059 82 QLPQIVVVGTQSSGKSSVIESLVGK 106 (1036)
Q Consensus 82 ~lPqIvVvG~QSsGKSSlLEal~G~ 106 (1036)
+.-+|+++|..++|||||+++|++.
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYD 56 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999865
No 154
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.26 E-value=2.1e-07 Score=111.04 Aligned_cols=26 Identities=19% Similarity=0.493 Sum_probs=23.6
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
.|.|+++|..++||||||++|.+..|
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~ 29 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQV 29 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 58999999999999999999987664
No 155
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.26 E-value=3.5e-06 Score=91.25 Aligned_cols=27 Identities=33% Similarity=0.581 Sum_probs=24.1
Q ss_pred CCCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 82 QLPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 82 ~lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
.-.+|+++|..++||||++++|+|..+
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~ 61 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQV 61 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457899999999999999999998764
No 156
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.24 E-value=4.8e-06 Score=92.47 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=21.1
Q ss_pred CceEEeCcCCCChhhHHhhhcCC
Q psy5059 84 PQIVVVGTQSSGKSSVIESLVGK 106 (1036)
Q Consensus 84 PqIvVvG~QSsGKSSlLEal~G~ 106 (1036)
.+|+++|+.++||||+++++.|.
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999998876
No 157
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.21 E-value=2.1e-06 Score=89.77 Aligned_cols=27 Identities=22% Similarity=0.482 Sum_probs=23.8
Q ss_pred CCCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 82 QLPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 82 ~lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
...+|+++|+.++|||||++++++..|
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~ 52 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCY 52 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCC
Confidence 356899999999999999999998775
No 158
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.21 E-value=1.4e-05 Score=83.98 Aligned_cols=26 Identities=27% Similarity=0.498 Sum_probs=23.1
Q ss_pred CCCceEEeCcCCCChhhHHhhhcCCC
Q psy5059 82 QLPQIVVVGTQSSGKSSVIESLVGKS 107 (1036)
Q Consensus 82 ~lPqIvVvG~QSsGKSSlLEal~G~~ 107 (1036)
...+|+++|++++|||||+++++|..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34689999999999999999999754
No 159
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.19 E-value=7e-06 Score=95.59 Aligned_cols=26 Identities=27% Similarity=0.494 Sum_probs=22.8
Q ss_pred CCCceEEeCcCCCChhhHHhhhcCCC
Q psy5059 82 QLPQIVVVGTQSSGKSSVIESLVGKS 107 (1036)
Q Consensus 82 ~lPqIvVvG~QSsGKSSlLEal~G~~ 107 (1036)
+..+|+++|..++|||||+++|++..
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~ 48 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDS 48 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhc
Confidence 34689999999999999999998654
No 160
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.49 E-value=2.1e-07 Score=96.02 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=23.1
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
-.+|+++|+.++|||||++++.+..|
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~~~~ 55 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTTNAF 55 (204)
Confidence 46899999999999999999987664
No 161
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.17 E-value=1.1e-06 Score=91.98 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=21.6
Q ss_pred CCCceEEeCcCCCChhhHHhhhcCCC
Q psy5059 82 QLPQIVVVGTQSSGKSSVIESLVGKS 107 (1036)
Q Consensus 82 ~lPqIvVvG~QSsGKSSlLEal~G~~ 107 (1036)
...+|+++|+.++|||||++++.+-.
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC
Confidence 34689999999999999999965433
No 162
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.17 E-value=6.3e-06 Score=94.88 Aligned_cols=23 Identities=13% Similarity=0.315 Sum_probs=20.7
Q ss_pred CceEEeCcCCCChhhHHhhhcCC
Q psy5059 84 PQIVVVGTQSSGKSSVIESLVGK 106 (1036)
Q Consensus 84 PqIvVvG~QSsGKSSlLEal~G~ 106 (1036)
-.|+++|..++|||||+++|++.
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~ 26 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKI 26 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEEEeCCCCCHHHHHHHHhCh
Confidence 36899999999999999999864
No 163
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.17 E-value=3.1e-06 Score=99.40 Aligned_cols=24 Identities=38% Similarity=0.486 Sum_probs=21.7
Q ss_pred CCceEEeCcCCCChhhHHhhhcCC
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGK 106 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~ 106 (1036)
...|+++|..++|||||+++|++.
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~ 30 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYK 30 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999864
No 164
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.16 E-value=7.5e-06 Score=93.50 Aligned_cols=59 Identities=14% Similarity=0.037 Sum_probs=39.6
Q ss_pred ccCCce-EEEEe-cccccCCCchhhhhhcCcccccccccccccchHHHHHHHHHHhhccCC--Ccceeee--ecccc---
Q psy5059 377 VDGRRT-LAVVT-KIDLMDAGTDAIDILCGRVIPVKLDVDGRRTYIEAQIKQLVLHYISNP--NSIILAV--VTANT--- 447 (1036)
Q Consensus 377 ~~g~rt-i~Vit-K~Dl~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~v~~~i~~~--~~ipla~--ISA~t--- 447 (1036)
..|.+. |.|+| |+|+ ++ +.. +...+.+..+++.. ...|+.. +||++
T Consensus 109 ~~~i~~~ivvvNNK~Dl-~~--~~~----------------------~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~ 163 (370)
T 2elf_A 109 LLGFKHGIIALTRSDST-HM--HAI----------------------DELKAKLKVITSGTVLQDWECISLNTNKSAKNP 163 (370)
T ss_dssp HTTCCEEEEEECCGGGS-CH--HHH----------------------HHHHHHHHHHTTTSTTTTCEEEECCCCTTSSST
T ss_pred HcCCCeEEEEEEeccCC-CH--HHH----------------------HHHHHHHHHHHHhcCCCceEEEecccccccCcC
Confidence 346666 99999 9999 43 111 22334555555543 3578888 99999
Q ss_pred hhhhHHHHHHhhh
Q psy5059 448 DMATSESLKLAKE 460 (1036)
Q Consensus 448 d~~~qeil~la~~ 460 (1036)
+.+..++++...+
T Consensus 164 g~gi~~L~~~l~~ 176 (370)
T 2elf_A 164 FEGVDELKARINE 176 (370)
T ss_dssp TTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHh
Confidence 9998888765543
No 165
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.14 E-value=5.7e-06 Score=87.37 Aligned_cols=24 Identities=42% Similarity=0.671 Sum_probs=22.1
Q ss_pred ceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 85 QIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 85 qIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
+|||+|+.++|||||+..+++-.|
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~~f 38 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYDSF 38 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCcCHHHHHHHHHhCCC
Confidence 799999999999999999987665
No 166
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.14 E-value=7.6e-06 Score=98.84 Aligned_cols=59 Identities=19% Similarity=0.240 Sum_probs=40.4
Q ss_pred ccCCceEEEEecccccCCCchhhhhhcCcccccccccccccchHHHHHHHHHHhhccCCCcceeeeecccchhhhHHHHH
Q psy5059 377 VDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKLDVDGRRTYIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLK 456 (1036)
Q Consensus 377 ~~g~rti~VitK~Dl~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~v~~~i~~~~~ipla~ISA~td~~~qeil~ 456 (1036)
..+.+.|.|+||+|+.+...+ .+.+.+...+ .........+||+++.++.++++
T Consensus 123 ~~~ipiIvviNKiDl~~a~~~-------------------------~v~~el~~~l-g~~~~~vi~vSAktg~GI~~Lle 176 (600)
T 2ywe_A 123 EQDLVIIPVINKIDLPSADVD-------------------------RVKKQIEEVL-GLDPEEAILASAKEGIGIEEILE 176 (600)
T ss_dssp HTTCEEEEEEECTTSTTCCHH-------------------------HHHHHHHHTS-CCCGGGCEECBTTTTBSHHHHHH
T ss_pred HCCCCEEEEEeccCccccCHH-------------------------HHHHHHHHhh-CCCcccEEEEEeecCCCchHHHH
Confidence 457889999999999764322 2223344433 23334578899999999999998
Q ss_pred Hhhhc
Q psy5059 457 LAKET 461 (1036)
Q Consensus 457 la~~v 461 (1036)
...+.
T Consensus 177 ~I~~~ 181 (600)
T 2ywe_A 177 AIVNR 181 (600)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 76443
No 167
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.11 E-value=5.7e-06 Score=100.00 Aligned_cols=27 Identities=22% Similarity=0.570 Sum_probs=23.9
Q ss_pred CCCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 82 QLPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 82 ~lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
..|.|+++|..++|||||+++|.|..+
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v 30 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAV 30 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccC
Confidence 468999999999999999999987653
No 168
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.10 E-value=1.5e-05 Score=92.14 Aligned_cols=57 Identities=12% Similarity=0.197 Sum_probs=39.8
Q ss_pred CceEEEEecccccCCCchhhhhhcCcccccccccccccchHHHHHHHHHHhhccC--CCcceeeeecccchhhhHHHHHH
Q psy5059 380 RRTLAVVTKIDLMDAGTDAIDILCGRVIPVKLDVDGRRTYIEAQIKQLVLHYISN--PNSIILAVVTANTDMATSESLKL 457 (1036)
Q Consensus 380 ~rti~VitK~Dl~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~v~~~i~~--~~~ipla~ISA~td~~~qeil~l 457 (1036)
.+.|.|+||+|+.+.... ....+.+..++.. ....++..+||+++.++.++++.
T Consensus 138 ~~iivviNK~Dl~~~~~~------------------------~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~ 193 (410)
T 1kk1_A 138 KNIIIAQNKIELVDKEKA------------------------LENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKA 193 (410)
T ss_dssp CCEEEEEECGGGSCHHHH------------------------HHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHH
T ss_pred CcEEEEEECccCCCHHHH------------------------HHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHH
Confidence 468899999999864210 1122334445443 34578899999999999999988
Q ss_pred hhh
Q psy5059 458 AKE 460 (1036)
Q Consensus 458 a~~ 460 (1036)
...
T Consensus 194 l~~ 196 (410)
T 1kk1_A 194 IED 196 (410)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 169
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.10 E-value=6.8e-06 Score=99.38 Aligned_cols=59 Identities=15% Similarity=0.179 Sum_probs=40.5
Q ss_pred ccCCceEEEEecccccCCCchhhhhhcCcccccccccccccchHHHHHHHHHHhhccCCCcceeeeecccchhhhHHHHH
Q psy5059 377 VDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKLDVDGRRTYIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLK 456 (1036)
Q Consensus 377 ~~g~rti~VitK~Dl~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~v~~~i~~~~~ipla~ISA~td~~~qeil~ 456 (1036)
..+.+.|.|+||+|+.+...+ .....+...+ .........+||+++.+++++++
T Consensus 121 ~~~ipiIvViNKiDl~~a~~~-------------------------~v~~ei~~~l-g~~~~~vi~vSAktg~GI~~Ll~ 174 (599)
T 3cb4_D 121 EMDLEVVPVLNKIDLPAADPE-------------------------RVAEEIEDIV-GIDATDAVRCSAKTGVGVQDVLE 174 (599)
T ss_dssp HTTCEEEEEEECTTSTTCCHH-------------------------HHHHHHHHHT-CCCCTTCEEECTTTCTTHHHHHH
T ss_pred HCCCCEEEeeeccCcccccHH-------------------------HHHHHHHHHh-CCCcceEEEeecccCCCchhHHH
Confidence 357789999999999765322 2223344444 22334578899999999999998
Q ss_pred Hhhhc
Q psy5059 457 LAKET 461 (1036)
Q Consensus 457 la~~v 461 (1036)
...+.
T Consensus 175 ~I~~~ 179 (599)
T 3cb4_D 175 RLVRD 179 (599)
T ss_dssp HHHHH
T ss_pred HHhhc
Confidence 76544
No 170
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.08 E-value=6.9e-06 Score=83.10 Aligned_cols=26 Identities=31% Similarity=0.547 Sum_probs=23.5
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
..+|+++|+.++|||||++++++..|
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~~ 32 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDCF 32 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46899999999999999999998775
No 171
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.07 E-value=6.2e-06 Score=85.70 Aligned_cols=26 Identities=31% Similarity=0.547 Sum_probs=23.6
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
..+|+++|+.++|||||++++++..|
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~~ 53 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDCF 53 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35899999999999999999998775
No 172
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.07 E-value=1.7e-05 Score=92.38 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=21.5
Q ss_pred CCceEEeCcCCCChhhHHhhhcCC
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGK 106 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~ 106 (1036)
...|+++|..++|||||+++|++.
T Consensus 6 ~~~I~iiG~~~~GKSTLi~~Ll~~ 29 (435)
T 1jny_A 6 HLNLIVIGHVDHGKSTLVGRLLMD 29 (435)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHH
Confidence 468999999999999999999854
No 173
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.06 E-value=4.8e-06 Score=96.46 Aligned_cols=67 Identities=10% Similarity=0.222 Sum_probs=43.8
Q ss_pred eEEEEEecCccccchHHHHHhhhccccCCceEEEEecccccCCCchhhhhhcCcccccccccccccchHHHHHHHHHHhh
Q psy5059 352 IILAVVTANTDMATSESLKLAKETDVDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKLDVDGRRTYIEAQIKQLVLHY 431 (1036)
Q Consensus 352 ~~~~~v~~~~d~~~~~~~~la~~~d~~g~rti~VitK~Dl~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~v~~~ 431 (1036)
++++++|.+++....+ ..+++.+. .+.+.|.|+||+|.+.+.. . ..+...++..
T Consensus 151 ~v~fI~d~~~~l~~~D-ieilk~L~-~~~~vI~Vi~KtD~Lt~~E--~----------------------~~l~~~I~~~ 204 (427)
T 2qag_B 151 CLYFIAPTGHSLKSLD-LVTMKKLD-SKVNIIPIIAKADAISKSE--L----------------------TKFKIKITSE 204 (427)
T ss_dssp EEEEECCCC---CHHH-HHHHHHTC-SCSEEEEEESCGGGSCHHH--H----------------------HHHHHHHHHH
T ss_pred EEEEEeCCCCCCCHHH-HHHHHHHh-hCCCEEEEEcchhccchHH--H----------------------HHHHHHHHHH
Confidence 3555666555443333 67888887 7899999999999986421 1 4566667766
Q ss_pred ccCCCcceeeeecc
Q psy5059 432 ISNPNSIILAVVTA 445 (1036)
Q Consensus 432 i~~~~~ipla~ISA 445 (1036)
+.. ..+++.++|.
T Consensus 205 L~~-~gi~I~~is~ 217 (427)
T 2qag_B 205 LVS-NGVQIYQFPT 217 (427)
T ss_dssp HBT-TBCCCCCCC-
T ss_pred HHH-cCCcEEecCC
Confidence 665 4677777774
No 174
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.05 E-value=2.5e-06 Score=88.62 Aligned_cols=27 Identities=37% Similarity=0.604 Sum_probs=24.9
Q ss_pred CCCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 82 QLPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 82 ~lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
..|+|+++|+.++||||++++|.+..|
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~ 37 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSV 37 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 578999999999999999999998875
No 175
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.05 E-value=1.8e-06 Score=104.42 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=21.6
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCC
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKS 107 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~ 107 (1036)
...|+++|..++|||||+++|++..
T Consensus 177 ~~~I~iiG~~d~GKSTLi~~Ll~~~ 201 (592)
T 3mca_A 177 VVHLVVTGHVDSGKSTMLGRIMFEL 201 (592)
T ss_dssp EEEEEEECCSSSTHHHHHHHHHHHH
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3469999999999999999997643
No 176
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.04 E-value=7.7e-06 Score=94.81 Aligned_cols=25 Identities=36% Similarity=0.546 Sum_probs=22.8
Q ss_pred ceEEeCcCCCChhhHHhhhcCCCcC
Q psy5059 85 QIVVVGTQSSGKSSVIESLVGKSFL 109 (1036)
Q Consensus 85 qIvVvG~QSsGKSSlLEal~G~~fl 109 (1036)
.|+++|+.++||||||+.|+|..+.
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g~~~~ 57 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLTDLY 57 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTCCCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Confidence 4699999999999999999999863
No 177
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.03 E-value=3.7e-06 Score=99.52 Aligned_cols=26 Identities=23% Similarity=0.520 Sum_probs=23.0
Q ss_pred CCCceEEeCcCCCChhhHHhhhcCCC
Q psy5059 82 QLPQIVVVGTQSSGKSSVIESLVGKS 107 (1036)
Q Consensus 82 ~lPqIvVvG~QSsGKSSlLEal~G~~ 107 (1036)
..|.|+++|..++|||||+++|.+..
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~ 28 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTK 28 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCC
Confidence 35899999999999999999997654
No 178
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.03 E-value=2.4e-05 Score=90.25 Aligned_cols=57 Identities=16% Similarity=0.281 Sum_probs=32.9
Q ss_pred CceEEEEecccccCCCchhhhhhcCcccccccccccccchHHHHHHHHHHhhccC--CCcceeeeecccchhhhHHHHHH
Q psy5059 380 RRTLAVVTKIDLMDAGTDAIDILCGRVIPVKLDVDGRRTYIEAQIKQLVLHYISN--PNSIILAVVTANTDMATSESLKL 457 (1036)
Q Consensus 380 ~rti~VitK~Dl~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~v~~~i~~--~~~ipla~ISA~td~~~qeil~l 457 (1036)
.+.|.|+||+|+.+..... ...+.+..+++. ....++..+||+++.++.++++.
T Consensus 136 ~~iivv~NK~Dl~~~~~~~------------------------~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~ 191 (408)
T 1s0u_A 136 DKIIIVQNKIDLVDEKQAE------------------------ENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKA 191 (408)
T ss_dssp CCEEEEEECTTSSCTTTTT------------------------THHHHHHHHHTTSTTTTCCEEEC------CHHHHHHH
T ss_pred CeEEEEEEccCCCCHHHHH------------------------HHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHH
Confidence 4689999999998754211 011223333332 34568889999999999999988
Q ss_pred hhh
Q psy5059 458 AKE 460 (1036)
Q Consensus 458 a~~ 460 (1036)
...
T Consensus 192 l~~ 194 (408)
T 1s0u_A 192 IQD 194 (408)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 179
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.02 E-value=6.7e-06 Score=83.41 Aligned_cols=23 Identities=26% Similarity=0.632 Sum_probs=21.4
Q ss_pred CceEEeCcCCCChhhHHhhhcCC
Q psy5059 84 PQIVVVGTQSSGKSSVIESLVGK 106 (1036)
Q Consensus 84 PqIvVvG~QSsGKSSlLEal~G~ 106 (1036)
.+|+++|+.++|||||+++++|.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999985
No 180
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.02 E-value=5.7e-06 Score=94.11 Aligned_cols=25 Identities=36% Similarity=0.495 Sum_probs=22.2
Q ss_pred CceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 84 PQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 84 PqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
..|+|+|..++|||||+++|.|...
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTCCC
T ss_pred EEEEEEcCCCCCHHHHHHHHhCCCC
Confidence 4789999999999999999988753
No 181
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.00 E-value=7.2e-06 Score=84.14 Aligned_cols=25 Identities=28% Similarity=0.518 Sum_probs=22.3
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCC
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKS 107 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~ 107 (1036)
..+|+++|++++|||||+++++|..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~ 30 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVH 30 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCc
Confidence 4689999999999999999998743
No 182
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.00 E-value=1.2e-05 Score=99.21 Aligned_cols=38 Identities=11% Similarity=-0.077 Sum_probs=29.9
Q ss_pred HHHHhhccCCCcceeeeecccchhhhHHHHHHhhhcCc
Q psy5059 426 QLVLHYISNPNSIILAVVTANTDMATSESLKLAKETDV 463 (1036)
Q Consensus 426 ~~v~~~i~~~~~ipla~ISA~td~~~qeil~la~~vd~ 463 (1036)
..++..+..-...|+.+.||+++..++.+++.....-|
T Consensus 242 ~~l~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lP 279 (693)
T 2xex_A 242 EAIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLP 279 (693)
T ss_dssp HHHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHHhCCeeeEEEeecccCcCHHHHHHHHHHHCC
Confidence 34445556667889999999999999999998877643
No 183
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=97.96 E-value=7.7e-06 Score=90.40 Aligned_cols=27 Identities=33% Similarity=0.528 Sum_probs=23.9
Q ss_pred CCCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 82 QLPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 82 ~lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
...+|+++|+.++|||||++++.+-.|
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~ 180 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAF 180 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCC
Confidence 357899999999999999999987665
No 184
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.95 E-value=5.4e-05 Score=93.43 Aligned_cols=33 Identities=12% Similarity=0.077 Sum_probs=26.4
Q ss_pred hhccCCCcceeeeecccchhhhHHHHHHhhhcC
Q psy5059 430 HYISNPNSIILAVVTANTDMATSESLKLAKETD 462 (1036)
Q Consensus 430 ~~i~~~~~ipla~ISA~td~~~qeil~la~~vd 462 (1036)
..+..-.+.|+.+.||+++..++.+++.....-
T Consensus 254 ~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~l 286 (704)
T 2rdo_7 254 QRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYL 286 (704)
T ss_pred HHHHhCCeeEEEEeecccCccHHHHHHHHHHHC
Confidence 333445678999999999999999999876663
No 185
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.94 E-value=5.1e-05 Score=90.56 Aligned_cols=30 Identities=13% Similarity=-0.107 Sum_probs=24.5
Q ss_pred CCCcceeeeecccchhhhHHHHHHhhhcCc
Q psy5059 434 NPNSIILAVVTANTDMATSESLKLAKETDV 463 (1036)
Q Consensus 434 ~~~~ipla~ISA~td~~~qeil~la~~vd~ 463 (1036)
.-.-.|+.+.||+++..++.+++.....-|
T Consensus 248 ~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~~P 277 (529)
T 2h5e_A 248 AGEITPVFFGTALGNFGVDHMLDGLVEWAP 277 (529)
T ss_dssp TTSEEEEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred hCceeEEEeeecccCCCHHHHHHHHHHhCC
Confidence 345678999999999999999998776643
No 186
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.91 E-value=4.1e-05 Score=97.46 Aligned_cols=25 Identities=12% Similarity=0.267 Sum_probs=22.2
Q ss_pred CCCceEEeCcCCCChhhHHhhhcCC
Q psy5059 82 QLPQIVVVGTQSSGKSSVIESLVGK 106 (1036)
Q Consensus 82 ~lPqIvVvG~QSsGKSSlLEal~G~ 106 (1036)
....|+++|..++|||||+++|++.
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~ 319 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTV 319 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhh
Confidence 4568999999999999999999864
No 187
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.91 E-value=3.5e-05 Score=94.85 Aligned_cols=36 Identities=6% Similarity=-0.148 Sum_probs=28.3
Q ss_pred HHHhhccCCCcceeeeecccchhhhHHHHHHhhhcC
Q psy5059 427 LVLHYISNPNSIILAVVTANTDMATSESLKLAKETD 462 (1036)
Q Consensus 427 ~v~~~i~~~~~ipla~ISA~td~~~qeil~la~~vd 462 (1036)
.++..+..-...|+.+.||+++..++.+++.....-
T Consensus 245 ~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~l 280 (691)
T 1dar_A 245 AIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYL 280 (691)
T ss_dssp HHHHHHHTTSCEEEEECBGGGTBSHHHHHHHHHHHS
T ss_pred HHHHHHHhCcEeEEEEeecccCcCHHHHHHHHHHhC
Confidence 344444555678999999999999999999887663
No 188
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=97.88 E-value=2.7e-05 Score=93.02 Aligned_cols=29 Identities=28% Similarity=0.633 Sum_probs=23.5
Q ss_pred CCCCCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 80 AIQLPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 80 ~i~lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
...-.+|+++|.+|+|||||+++++|..|
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~ 66 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETF 66 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC---
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCC
Confidence 44557999999999999999999999875
No 189
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=97.83 E-value=2.8e-05 Score=89.56 Aligned_cols=38 Identities=21% Similarity=0.167 Sum_probs=21.8
Q ss_pred ceEEeCcCCCChhhHHhhhcCCCcCcccccccccCceE
Q psy5059 85 QIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLI 122 (1036)
Q Consensus 85 qIvVvG~QSsGKSSlLEal~G~~flPrg~G~cTR~Pl~ 122 (1036)
+|++||.+|+|||||+++|+|........--||+-|..
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~ 39 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANV 39 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------CCE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCce
Confidence 68999999999999999999987311122235666653
No 190
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.76 E-value=8.7e-05 Score=76.10 Aligned_cols=26 Identities=27% Similarity=0.588 Sum_probs=23.8
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
..+|+++|+.+||||||+++|+|..|
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~ 30 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEF 30 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCC
Confidence 46899999999999999999999875
No 191
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.76 E-value=6.1e-05 Score=85.35 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=22.3
Q ss_pred CCCceEEeCcCCCChhhHHhhhcCC
Q psy5059 82 QLPQIVVVGTQSSGKSSVIESLVGK 106 (1036)
Q Consensus 82 ~lPqIvVvG~QSsGKSSlLEal~G~ 106 (1036)
..+.|+++|.+++||||++++|++.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999754
No 192
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.70 E-value=6.9e-05 Score=85.47 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=22.0
Q ss_pred CceEEeCcCCCChhhHHhhhcCCC
Q psy5059 84 PQIVVVGTQSSGKSSVIESLVGKS 107 (1036)
Q Consensus 84 PqIvVvG~QSsGKSSlLEal~G~~ 107 (1036)
..|+++|.+|+||||++++|.|..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhh
Confidence 579999999999999999998764
No 193
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=97.68 E-value=5.4e-05 Score=81.56 Aligned_cols=54 Identities=11% Similarity=0.097 Sum_probs=36.2
Q ss_pred ccCCceEEEEecccccCCCchhhhhhcCcccccccccccccchHHHHHHHHHHhhccCCCcceeeeecccchhhhHHHHH
Q psy5059 377 VDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKLDVDGRRTYIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLK 456 (1036)
Q Consensus 377 ~~g~rti~VitK~Dl~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~v~~~i~~~~~ipla~ISA~td~~~qeil~ 456 (1036)
..+.+.|.|.||+|+.+. ..+ .............+...+||+++.++.+++.
T Consensus 196 ~~~~piilV~NK~Dl~~~---------------------------~~v-~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~ 247 (255)
T 3c5h_A 196 KTKKPIVVVLTKCDEGVE---------------------------RYI-RDAHTFALSKKNLQVVETSARSNVNVDLAFS 247 (255)
T ss_dssp HTTCCEEEEEECGGGBCH---------------------------HHH-HHHHHHHHTSSSCCEEECBTTTTBSHHHHHH
T ss_pred cCCCCEEEEEEccccccc---------------------------HHH-HHHHHHHHhcCCCeEEEEECCCCCCHHHHHH
Confidence 457899999999999642 111 1222222222245778899999999999987
Q ss_pred Hh
Q psy5059 457 LA 458 (1036)
Q Consensus 457 la 458 (1036)
..
T Consensus 248 ~l 249 (255)
T 3c5h_A 248 TL 249 (255)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 194
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.65 E-value=2.3e-05 Score=89.44 Aligned_cols=23 Identities=30% Similarity=0.562 Sum_probs=21.4
Q ss_pred CceEEeCcCCCChhhHHhhhcCC
Q psy5059 84 PQIVVVGTQSSGKSSVIESLVGK 106 (1036)
Q Consensus 84 PqIvVvG~QSsGKSSlLEal~G~ 106 (1036)
..|+++|.+++||||++++|.|.
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhh
Confidence 57999999999999999999876
No 195
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.64 E-value=0.00018 Score=88.16 Aligned_cols=34 Identities=12% Similarity=0.099 Sum_probs=26.2
Q ss_pred HHhhccCCCcceeeeecccchhhhHHHHHHhhhc
Q psy5059 428 VLHYISNPNSIILAVVTANTDMATSESLKLAKET 461 (1036)
Q Consensus 428 v~~~i~~~~~ipla~ISA~td~~~qeil~la~~v 461 (1036)
++..+..-.+.|+...||+++.+++.+++.....
T Consensus 238 ~~~~~~~~~~~pv~~~SA~~~~Gv~~Ll~~i~~~ 271 (665)
T 2dy1_A 238 FHEAVRRGLLYPVALASGEREIGVLPLLELILEA 271 (665)
T ss_dssp HHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHhCCeeEEEEeecccCcCHHHHHHHHHHh
Confidence 3344444567899999999999999999887554
No 196
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.63 E-value=7.3e-05 Score=76.42 Aligned_cols=26 Identities=27% Similarity=0.588 Sum_probs=23.9
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
..+|+++|+.+||||||+++++|..|
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCC
Confidence 46899999999999999999999875
No 197
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=97.51 E-value=9.4e-05 Score=93.02 Aligned_cols=25 Identities=28% Similarity=0.508 Sum_probs=22.4
Q ss_pred CCCceEEeCcCCCChhhHHhhhcCC
Q psy5059 82 QLPQIVVVGTQSSGKSSVIESLVGK 106 (1036)
Q Consensus 82 ~lPqIvVvG~QSsGKSSlLEal~G~ 106 (1036)
....|+++|..++|||||+++|++.
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~ 42 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQR 42 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999999999999999864
No 198
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.51 E-value=0.00013 Score=82.48 Aligned_cols=26 Identities=23% Similarity=0.212 Sum_probs=23.6
Q ss_pred CCCCceEEeCcCCCChhhHHhhhcCC
Q psy5059 81 IQLPQIVVVGTQSSGKSSVIESLVGK 106 (1036)
Q Consensus 81 i~lPqIvVvG~QSsGKSSlLEal~G~ 106 (1036)
-+.|.|+++|.+|||||||+++|+|.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 34789999999999999999999985
No 199
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.48 E-value=0.00014 Score=80.69 Aligned_cols=23 Identities=39% Similarity=0.564 Sum_probs=20.1
Q ss_pred ceEEeCcCCCChhhHHhhhcCCC
Q psy5059 85 QIVVVGTQSSGKSSVIESLVGKS 107 (1036)
Q Consensus 85 qIvVvG~QSsGKSSlLEal~G~~ 107 (1036)
.|+++|+.++||||||+.|.|..
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~~ 42 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLTD 42 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67999999999999999999974
No 200
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=97.45 E-value=6.2e-05 Score=88.52 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.4
Q ss_pred CCCceEEeCcCCCChhhHHhhhcC
Q psy5059 82 QLPQIVVVGTQSSGKSSVIESLVG 105 (1036)
Q Consensus 82 ~lPqIvVvG~QSsGKSSlLEal~G 105 (1036)
+...|+++|..++|||||+++|++
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~ 65 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILF 65 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHH
T ss_pred CeeEEEEEECCCCCHHHHHHHHHH
Confidence 346899999999999999999974
No 201
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.44 E-value=0.00016 Score=75.26 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=23.3
Q ss_pred CCCceEEeCcCCCChhhHHhhhcCCC
Q psy5059 82 QLPQIVVVGTQSSGKSSVIESLVGKS 107 (1036)
Q Consensus 82 ~lPqIvVvG~QSsGKSSlLEal~G~~ 107 (1036)
..|.|+++|..+|||||++++|++..
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 46899999999999999999998753
No 202
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.38 E-value=0.00023 Score=80.17 Aligned_cols=25 Identities=24% Similarity=0.330 Sum_probs=22.3
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCC
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKS 107 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~ 107 (1036)
-..++++|.++|||||+|++|+|.-
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4678999999999999999999864
No 203
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.34 E-value=0.00024 Score=71.70 Aligned_cols=27 Identities=26% Similarity=0.481 Sum_probs=23.6
Q ss_pred CCeEEEeccCCCchHHHHHhhhcCCcc
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGKSFL 33 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~~~~ 33 (1036)
-..|+|||.+|||||||+++|++..|.
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~ 41 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFD 41 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 358999999999999999999986554
No 204
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.32 E-value=0.0015 Score=75.58 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=22.7
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCC
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKS 107 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~ 107 (1036)
.+.++++|..+|||||||++|+|..
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCC
Confidence 3678999999999999999999875
No 205
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.30 E-value=0.00018 Score=80.95 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=22.4
Q ss_pred CCCceEEeCcCCCChhhHHhhhcCC
Q psy5059 82 QLPQIVVVGTQSSGKSSVIESLVGK 106 (1036)
Q Consensus 82 ~lPqIvVvG~QSsGKSSlLEal~G~ 106 (1036)
..+.|+++|.+++||||++++|+|.
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999865
No 206
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.13 E-value=0.00071 Score=80.09 Aligned_cols=67 Identities=16% Similarity=0.126 Sum_probs=42.3
Q ss_pred eEEEEecccccCCCchhhhhhcCcccccccccccccchHHHHHHHHHHhhccCCCcceeeeecccchhh-hHHHHHHhhh
Q psy5059 382 TLAVVTKIDLMDAGTDAIDILCGRVIPVKLDVDGRRTYIEAQIKQLVLHYISNPNSIILAVVTANTDMA-TSESLKLAKE 460 (1036)
Q Consensus 382 ti~VitK~Dl~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~v~~~i~~~~~ipla~ISA~td~~-~qeil~la~~ 460 (1036)
+++|+||+|...++..+.++..---+|++ ++|....+ -....+.|..++||+.+.. +.++++.+.+
T Consensus 243 ~gvVlNK~D~~~~~g~~l~~~~~~g~PI~--fig~ge~~-----------~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e 309 (504)
T 2j37_W 243 ASVIVTKLDGHAKGGGALSAVAATKSPII--FIGTGEHI-----------DDFEPFKTQPFISKLLGMGDIEGLIDKVNE 309 (504)
T ss_dssp CCEEEECTTSCCCCTHHHHHHHHHCCCEE--EEECSSST-----------TCEECCTHHHHHHCCCTTTTTTTTHHHHTT
T ss_pred eEEEEeCCccccchHHHHHHHHHhCCCeE--Eeccccch-----------hhhhccCcceeeehhcCCCcHHHHHHHHHH
Confidence 58899999998777655544321124543 23321100 0122456677899999998 8888888877
Q ss_pred c
Q psy5059 461 T 461 (1036)
Q Consensus 461 v 461 (1036)
.
T Consensus 310 ~ 310 (504)
T 2j37_W 310 L 310 (504)
T ss_dssp T
T ss_pred H
Confidence 6
No 207
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.07 E-value=0.0006 Score=68.04 Aligned_cols=27 Identities=33% Similarity=0.498 Sum_probs=23.2
Q ss_pred CCeEEEeccCCCchHHHHHhhhcCCcc
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGKSFL 33 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~~~~ 33 (1036)
-+.|++||.+|||||||+++|++..|.
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~~~ 32 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQFV 32 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCC
Confidence 368999999999999999999975443
No 208
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.07 E-value=0.00051 Score=75.40 Aligned_cols=24 Identities=29% Similarity=0.541 Sum_probs=22.2
Q ss_pred CceEEeCcCCCChhhHHhhhcCCC
Q psy5059 84 PQIVVVGTQSSGKSSVIESLVGKS 107 (1036)
Q Consensus 84 PqIvVvG~QSsGKSSlLEal~G~~ 107 (1036)
.+++++|.+|+||||++++|.|..
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred ceEEEEecCCCchHHHHHHHhcCc
Confidence 479999999999999999999876
No 209
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.99 E-value=0.0014 Score=75.77 Aligned_cols=84 Identities=10% Similarity=-0.026 Sum_probs=50.8
Q ss_pred HHHhhhccccCCceEEEEeccccc--CCCchhhhhhcCcccccccccccccchHHHHHHHHHHhhc----cC--CCccee
Q psy5059 369 LKLAKETDVDGRRTLAVVTKIDLM--DAGTDAIDILCGRVIPVKLDVDGRRTYIEAQIKQLVLHYI----SN--PNSIIL 440 (1036)
Q Consensus 369 ~~la~~~d~~g~rti~VitK~Dl~--~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~v~~~i----~~--~~~ipl 440 (1036)
..||+.+-..|.+.+.|+||+|+. |+-+..+ |...+ ..+.+.+.... .. .....+
T Consensus 165 v~la~aL~~~~~p~~lV~tkpdlllLDEPtsgL------------D~~~~-----~~l~~~l~~l~~~~l~~~g~~~~~i 227 (413)
T 1tq4_A 165 IDIAKAISMMKKEFYFVRTKVDSDITNEADGEP------------QTFDK-----EKVLQDIRLNCVNTFRENGIAEPPI 227 (413)
T ss_dssp HHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCC------------TTCCH-----HHHHHHHHHHHHHHHHHTTCSSCCE
T ss_pred HHHHHHHHhcCCCeEEEEecCcccccCcccccC------------CHHHH-----HHHHHHHHHHHHHHHHhcCCCCCcE
Confidence 557888888899999999999974 4433321 22221 23333333332 11 233455
Q ss_pred eeecc--cchhhhHHHHHHhhhcCcCCCcee
Q psy5059 441 AVVTA--NTDMATSESLKLAKETDVDGRRTL 469 (1036)
Q Consensus 441 a~ISA--~td~~~qeil~la~~vd~~g~RtI 469 (1036)
+.+|+ ..+....++.+...+.-|++.+..
T Consensus 228 iliSsh~l~~~~~e~L~d~I~~~Lpeg~~~~ 258 (413)
T 1tq4_A 228 FLLSNKNVCHYDFPVLMDKLISDLPIYKRHN 258 (413)
T ss_dssp EECCTTCTTSTTHHHHHHHHHHHSCGGGHHH
T ss_pred EEEecCcCCccCHHHHHHHHHHhCccchhhH
Confidence 66788 666668888888766666666544
No 210
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=96.97 E-value=0.00044 Score=85.24 Aligned_cols=44 Identities=25% Similarity=0.488 Sum_probs=40.0
Q ss_pred CCeEEEeccCCCchHHHHHhhhcCCcccccCCccccccEEEeec
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLY 50 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~~~~pr~~~~~trrpl~l~l~ 50 (1036)
-+.|+|||.+|||||||+|+|+|.+++|.+.+-+|++|..+...
T Consensus 69 ~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g 112 (695)
T 2j69_A 69 VFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYG 112 (695)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEEC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeC
Confidence 35799999999999999999999999999999999999988653
No 211
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=96.95 E-value=0.002 Score=77.11 Aligned_cols=95 Identities=14% Similarity=0.090 Sum_probs=60.0
Q ss_pred HHHhhhccccCCceEEEEecccccCCCchh-----hhhhcCccccccccc------ccccc-------------------
Q psy5059 369 LKLAKETDVDGRRTLAVVTKIDLMDAGTDA-----IDILCGRVIPVKLDV------DGRRT------------------- 418 (1036)
Q Consensus 369 ~~la~~~d~~g~rti~VitK~Dl~~~g~~~-----~~~l~~~~~~~~~~~------~~~~~------------------- 418 (1036)
.++-+.++..|.+.|.||||+|+....-+. .+.|.-.+.|+.+.+ .|..+
T Consensus 142 ~~v~~~a~~~~lp~i~fINK~Dr~~ad~~~~~~~i~~~l~~~~~p~~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~ 221 (548)
T 3vqt_A 142 RKLMDVCRMRATPVMTFVNKMDREALHPLDVMADIEQHLQIECAPMTWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQS 221 (548)
T ss_dssp HHHHHHHHHTTCCEEEEEECTTSCCCCHHHHHHHHHHHHTSEEEESEEEESCGGGCCEEEETTTTEEEECC-------CC
T ss_pred HHHHHHHHHhCCceEEEEecccchhcchhHhhhhhhhhcCCceEeEEeeeecCCcccceEeeeeeeeeecccccCCcccc
Confidence 456677788899999999999997665332 356666777776532 11100
Q ss_pred ----------hHHHH-------HHH---HH--------HhhccCCCcceeeeecccchhhhHHHHHHhhhcCc
Q psy5059 419 ----------YIEAQ-------IKQ---LV--------LHYISNPNSIILAVVTANTDMATSESLKLAKETDV 463 (1036)
Q Consensus 419 ----------~~~~~-------l~~---~v--------~~~i~~~~~ipla~ISA~td~~~qeil~la~~vd~ 463 (1036)
.+.+. +.. .. .+.+..-.-.|+.+.||+++..++.+++.....-|
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~g~~~PV~~gSA~~~~Gv~~LLd~iv~~~P 294 (548)
T 3vqt_A 222 GIVIHGADDPQLDEYLGDQAEQLRMDLALLEEAGTPFDEERYLKGELTPVFFGSAINNFGVREMLDMFVEFAP 294 (548)
T ss_dssp CEECCSTTCTHHHHHHGGGHHHHHHHHHHHHHHCCCCCHHHHHTTSEEEEEECBGGGTBSHHHHHHHHHHHSC
T ss_pred cccccccchHHHHHHHHHHHHHhhhHHHHHhhccCchhHHHHHhCCcceeeecccccCcCHHHHHHHHHHhCC
Confidence 01100 000 00 11122335679999999999999999999877744
No 212
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.92 E-value=0.0031 Score=65.56 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=24.0
Q ss_pred CCCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 82 QLPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 82 ~lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
..|.|+++|..+|||||+++++++..|
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 468999999999999999999987654
No 213
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.87 E-value=0.0017 Score=70.68 Aligned_cols=23 Identities=35% Similarity=0.614 Sum_probs=21.5
Q ss_pred ceEEeCcCCCChhhHHhhhcCCC
Q psy5059 85 QIVVVGTQSSGKSSVIESLVGKS 107 (1036)
Q Consensus 85 qIvVvG~QSsGKSSlLEal~G~~ 107 (1036)
.++++|..+|||||||++|+|..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999976
No 214
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=96.87 E-value=0.0012 Score=79.50 Aligned_cols=26 Identities=31% Similarity=0.556 Sum_probs=23.9
Q ss_pred CCCceEEeCcCCCChhhHHhhhcCCC
Q psy5059 82 QLPQIVVVGTQSSGKSSVIESLVGKS 107 (1036)
Q Consensus 82 ~lPqIvVvG~QSsGKSSlLEal~G~~ 107 (1036)
..+.|+|+|.+|+|||||+++|+|..
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 56789999999999999999999976
No 215
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=96.87 E-value=0.00057 Score=78.02 Aligned_cols=45 Identities=22% Similarity=0.251 Sum_probs=35.1
Q ss_pred CCeEEEeccCCCchHHHHHhhhcCCcccccCCccccccEEEeecc
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYY 51 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~~~~pr~~~~~trrpl~l~l~~ 51 (1036)
.++|++||.||||||||||+|.|..-.......+|+.|..=.+..
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~ 116 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRY 116 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEe
Confidence 368999999999999999999996544444456788887655543
No 216
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=96.86 E-value=0.0017 Score=79.33 Aligned_cols=93 Identities=12% Similarity=0.093 Sum_probs=55.2
Q ss_pred HHHhhhccccCCceEEEEecccccCCCchh-----hhhhcCcccccc-ccccc-------ccch----HH----------
Q psy5059 369 LKLAKETDVDGRRTLAVVTKIDLMDAGTDA-----IDILCGRVIPVK-LDVDG-------RRTY----IE---------- 421 (1036)
Q Consensus 369 ~~la~~~d~~g~rti~VitK~Dl~~~g~~~-----~~~l~~~~~~~~-~~~~~-------~~~~----~~---------- 421 (1036)
..+.+.+...|-+.|.||||+|+....-+. .+.|...+.+.. .+... .... +.
T Consensus 109 ~~v~~~a~~~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~ 188 (638)
T 3j25_A 109 RILFHALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKY 188 (638)
T ss_dssp HHHHHHHHHHTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHcCCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccceeEeeccccccccchhhhhhhhhcccHHHHhhh
Confidence 456777778899999999999997665432 133333222111 11000 0000 00
Q ss_pred --------HHHHHHHHhhccCCCcceeeeecccchhhhHHHHHHhhhc
Q psy5059 422 --------AQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKET 461 (1036)
Q Consensus 422 --------~~l~~~v~~~i~~~~~ipla~ISA~td~~~qeil~la~~v 461 (1036)
..+...+...+......|+.+.||+++..++.+++.....
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~ 236 (638)
T 3j25_A 189 MSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNK 236 (638)
T ss_dssp HHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHS
T ss_pred ccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhcc
Confidence 0122223333445566899999999999999999988665
No 217
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.85 E-value=0.011 Score=68.82 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=19.7
Q ss_pred CceEEeCcCCCChhhHHhhhcC
Q psy5059 84 PQIVVVGTQSSGKSSVIESLVG 105 (1036)
Q Consensus 84 PqIvVvG~QSsGKSSlLEal~G 105 (1036)
.-|+++|.|+||||+++..|+.
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHH
Confidence 4688999999999999999983
No 218
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.74 E-value=0.0056 Score=65.18 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=21.0
Q ss_pred CCCceEEeCcCCCChhhHHhhhc
Q psy5059 82 QLPQIVVVGTQSSGKSSVIESLV 104 (1036)
Q Consensus 82 ~lPqIvVvG~QSsGKSSlLEal~ 104 (1036)
..+-++++|..++||||++.+|+
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHH
Confidence 45778999999999999999998
No 219
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.73 E-value=0.0012 Score=66.09 Aligned_cols=42 Identities=29% Similarity=0.389 Sum_probs=31.0
Q ss_pred CCeEEEeccCCCchHHHHHhhhcCCcccccCCccccccEEEe
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQ 48 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~~~~pr~~~~~trrpl~l~ 48 (1036)
++.|+|+|.+|||||||+++++|..|.+.....+|+.+....
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~ 42 (190)
T 2cxx_A 1 MATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIE 42 (190)
T ss_dssp -CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEe
Confidence 478999999999999999999998875543334455544433
No 220
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=96.71 E-value=0.0064 Score=75.05 Aligned_cols=37 Identities=3% Similarity=-0.227 Sum_probs=28.4
Q ss_pred HHHhhccCCCcceeeeecccchhhhHHHHHHhhhcCc
Q psy5059 427 LVLHYISNPNSIILAVVTANTDMATSESLKLAKETDV 463 (1036)
Q Consensus 427 ~v~~~i~~~~~ipla~ISA~td~~~qeil~la~~vd~ 463 (1036)
.+..........|..+.||.++..++.++++....-|
T Consensus 254 ~l~~~~~~~~~~pv~~gsa~~~~gv~~lLd~i~~~lP 290 (709)
T 4fn5_A 254 GLRLRTLACEIVPAVCGSSFKNKGVPLVLDAVIDYLP 290 (709)
T ss_dssp HHHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHSC
T ss_pred HHHHhhhhceeeeeeeeecccCCchHHHHHHHHhhCC
Confidence 3444445567789999999999999999988766643
No 221
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.70 E-value=0.0014 Score=75.35 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=21.6
Q ss_pred CCceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 83 LPQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 83 lPqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
-.+|++||.+|+|||||+++|+|..+
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~ 47 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQA 47 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCc
Confidence 35899999999999999999999875
No 222
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.65 E-value=0.0012 Score=66.15 Aligned_cols=34 Identities=24% Similarity=0.504 Sum_probs=29.3
Q ss_pred CCCCCCCCeEEEeccCCCchHHHHHhhhcCCccc
Q psy5059 1 GTDAIQLPQIVVVGTQSSGKSSVIESLVGKSFLP 34 (1036)
Q Consensus 1 ~~~~~~lp~i~vvg~~~~gkss~~~~~~g~~~~p 34 (1036)
|...+.-+.|++||.+|||||||+++|+|..+.+
T Consensus 1 ~~~~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~ 34 (188)
T 2wjg_A 1 GGSHMKSYEIALIGNPNVGKSTIFNALTGENVYI 34 (188)
T ss_dssp CCCCCCEEEEEEECSTTSSHHHHHHHHHTTCEEE
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHhCCCccc
Confidence 5667777899999999999999999999976543
No 223
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.56 E-value=0.0046 Score=70.37 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=22.1
Q ss_pred CceEEeCcCCCChhhHHhhhcCCC
Q psy5059 84 PQIVVVGTQSSGKSSVIESLVGKS 107 (1036)
Q Consensus 84 PqIvVvG~QSsGKSSlLEal~G~~ 107 (1036)
.+|++||.+|+|||||+++|+|..
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999999875
No 224
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.53 E-value=0.0011 Score=75.18 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=22.3
Q ss_pred CceEEeCcCCCChhhHHhhhcCCCc
Q psy5059 84 PQIVVVGTQSSGKSSVIESLVGKSF 108 (1036)
Q Consensus 84 PqIvVvG~QSsGKSSlLEal~G~~f 108 (1036)
.+|++||.+|+|||||+++|+|..+
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~ 27 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGI 27 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Confidence 4789999999999999999999764
No 225
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=96.53 E-value=0.016 Score=64.85 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=19.4
Q ss_pred ceEEeCcCCCChhhHHhhhcCC
Q psy5059 85 QIVVVGTQSSGKSSVIESLVGK 106 (1036)
Q Consensus 85 qIvVvG~QSsGKSSlLEal~G~ 106 (1036)
+|+++|+.++||||++..+.+.
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~ 22 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHN 22 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSC
T ss_pred CEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999887654
No 226
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.43 E-value=0.0017 Score=70.00 Aligned_cols=27 Identities=15% Similarity=0.441 Sum_probs=24.0
Q ss_pred CCeEEEeccCCCchHHHHHhhhcCCcc
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGKSFL 33 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~~~~ 33 (1036)
+|.|++||.+|||||||||+|.|..+.
T Consensus 1 m~kI~lvG~~n~GKSTL~n~L~g~~~~ 27 (256)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALTNANQR 27 (256)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHTTSEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Confidence 489999999999999999999997653
No 227
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.37 E-value=0.0039 Score=67.60 Aligned_cols=24 Identities=38% Similarity=0.771 Sum_probs=22.6
Q ss_pred CceEEeCcCCCChhhHHhhhcCCC
Q psy5059 84 PQIVVVGTQSSGKSSVIESLVGKS 107 (1036)
Q Consensus 84 PqIvVvG~QSsGKSSlLEal~G~~ 107 (1036)
.+++++|.+++||||++++|.|..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~ 123 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKR 123 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTC
T ss_pred hheEEeCCCCCCHHHHHHHHhccc
Confidence 689999999999999999999876
No 228
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.34 E-value=0.0024 Score=67.58 Aligned_cols=40 Identities=28% Similarity=0.458 Sum_probs=28.5
Q ss_pred CCCeEEEeccCCCchHHHHHhhhcCCcccccCC--ccccccE
Q psy5059 6 QLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIG--IVTRRPL 45 (1036)
Q Consensus 6 ~lp~i~vvg~~~~gkss~~~~~~g~~~~pr~~~--~~trrpl 45 (1036)
..+.|++||.+|||||||+|+|+|..+.+.+.. .+|+.+.
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~ 69 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCE 69 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCE
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEE
Confidence 346899999999999999999999887554432 3444443
No 229
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.22 E-value=0.0028 Score=62.68 Aligned_cols=29 Identities=14% Similarity=0.430 Sum_probs=26.1
Q ss_pred CCCeEEEeccCCCchHHHHHhhhcCCccc
Q psy5059 6 QLPQIVVVGTQSSGKSSVIESLVGKSFLP 34 (1036)
Q Consensus 6 ~lp~i~vvg~~~~gkss~~~~~~g~~~~p 34 (1036)
.-+.|+|||.+|||||||+++|+|..|.+
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~ 35 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTE 35 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcccc
Confidence 46899999999999999999999987754
No 230
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.17 E-value=0.003 Score=61.25 Aligned_cols=27 Identities=33% Similarity=0.540 Sum_probs=24.1
Q ss_pred CCeEEEeccCCCchHHHHHhhhcCCcc
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGKSFL 33 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~~~~ 33 (1036)
+|.|+|+|.+||||||++++++|..+.
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~ 27 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSA 27 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCee
Confidence 589999999999999999999997753
No 231
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.17 E-value=0.0022 Score=64.64 Aligned_cols=28 Identities=43% Similarity=0.684 Sum_probs=23.3
Q ss_pred CCCeEEEeccCCCchHHHHHhhhcCCcc
Q psy5059 6 QLPQIVVVGTQSSGKSSVIESLVGKSFL 33 (1036)
Q Consensus 6 ~lp~i~vvg~~~~gkss~~~~~~g~~~~ 33 (1036)
..+.|+|||.+|||||||+|+|+|..|.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~ 49 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNL 49 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc
Confidence 4678999999999999999999998764
No 232
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.08 E-value=0.004 Score=66.63 Aligned_cols=39 Identities=28% Similarity=0.430 Sum_probs=26.6
Q ss_pred CeEEEeccCCCchHHHHHhhhcCCcccccCC--ccccccEE
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVGKSFLPRGIG--IVTRRPLI 46 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g~~~~pr~~~--~~trrpl~ 46 (1036)
..|++||.+||||||++|+|+|..+.+.+.. .+|+.+..
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~ 62 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTT 62 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEE
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEE
Confidence 4799999999999999999999776553322 24554443
No 233
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.07 E-value=0.019 Score=66.57 Aligned_cols=22 Identities=36% Similarity=0.439 Sum_probs=19.5
Q ss_pred ceEEeCcCCCChhhHHhhhcCC
Q psy5059 85 QIVVVGTQSSGKSSVIESLVGK 106 (1036)
Q Consensus 85 qIvVvG~QSsGKSSlLEal~G~ 106 (1036)
-|+++|.|+||||+++..|++.
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5788999999999999999853
No 234
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.99 E-value=0.0043 Score=61.27 Aligned_cols=26 Identities=27% Similarity=0.574 Sum_probs=23.4
Q ss_pred CCeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
-+.|++||.+|||||||+++|+|..+
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCe
Confidence 36799999999999999999999665
No 235
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.96 E-value=0.0029 Score=62.29 Aligned_cols=27 Identities=30% Similarity=0.481 Sum_probs=22.9
Q ss_pred CCCeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 6 QLPQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 6 ~lp~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
..+.|+|||.+|||||||+++|.|..+
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~ 29 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQE 29 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC--
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCC
Confidence 346899999999999999999998765
No 236
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.95 E-value=0.0035 Score=65.58 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=25.1
Q ss_pred CCeEEEeccCCCchHHHHHhhhcCCccc
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGKSFLP 34 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~~~~p 34 (1036)
.+.|+|||.+|||||||+|+|+|..|.+
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~~~~~ 56 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRANVDV 56 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTTCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcc
Confidence 4689999999999999999999988753
No 237
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.93 E-value=0.0043 Score=67.47 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=24.7
Q ss_pred CCCeEEEeccCCCchHHHHHhhhcCCcc
Q psy5059 6 QLPQIVVVGTQSSGKSSVIESLVGKSFL 33 (1036)
Q Consensus 6 ~lp~i~vvg~~~~gkss~~~~~~g~~~~ 33 (1036)
.-+.|++||.+|||||||||+|+|..+.
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~ 29 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQR 29 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcc
Confidence 3468999999999999999999998753
No 238
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.89 E-value=0.0043 Score=64.11 Aligned_cols=28 Identities=32% Similarity=0.517 Sum_probs=25.3
Q ss_pred CCCeEEEeccCCCchHHHHHhhhcCCcc
Q psy5059 6 QLPQIVVVGTQSSGKSSVIESLVGKSFL 33 (1036)
Q Consensus 6 ~lp~i~vvg~~~~gkss~~~~~~g~~~~ 33 (1036)
..|.|+|||.+|||||||+|+|+|..+.
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~ 55 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRL 55 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcc
Confidence 5689999999999999999999998743
No 239
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.87 E-value=0.0047 Score=61.00 Aligned_cols=29 Identities=24% Similarity=0.501 Sum_probs=24.1
Q ss_pred CCCeEEEeccCCCchHHHHHhhhcCCccc
Q psy5059 6 QLPQIVVVGTQSSGKSSVIESLVGKSFLP 34 (1036)
Q Consensus 6 ~lp~i~vvg~~~~gkss~~~~~~g~~~~p 34 (1036)
..+.|+|+|.+|||||||+++|+|..+.+
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~ 36 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFSG 36 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC---
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 45789999999999999999999987653
No 240
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.85 E-value=0.0042 Score=60.32 Aligned_cols=29 Identities=24% Similarity=0.524 Sum_probs=25.3
Q ss_pred CCCCeEEEeccCCCchHHHHHhhhcCCcc
Q psy5059 5 IQLPQIVVVGTQSSGKSSVIESLVGKSFL 33 (1036)
Q Consensus 5 ~~lp~i~vvg~~~~gkss~~~~~~g~~~~ 33 (1036)
++...|+|+|.+|||||||+++|.|..+.
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~ 30 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFV 30 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccC
Confidence 44568999999999999999999997764
No 241
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.83 E-value=0.0065 Score=66.17 Aligned_cols=26 Identities=27% Similarity=0.603 Sum_probs=23.2
Q ss_pred CCeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
.+.|++||.+|||||||||+|+|..+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~ 28 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQ 28 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCC
Confidence 36899999999999999999999653
No 242
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.80 E-value=0.0054 Score=59.90 Aligned_cols=28 Identities=29% Similarity=0.562 Sum_probs=24.5
Q ss_pred CeEEEeccCCCchHHHHHhhhcCCcccc
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVGKSFLPR 35 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g~~~~pr 35 (1036)
..|+|||.+||||||++++++|..|.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~ 31 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKFNPS 31 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC-
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCC
Confidence 4799999999999999999999887553
No 243
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.80 E-value=0.0041 Score=60.77 Aligned_cols=27 Identities=30% Similarity=0.430 Sum_probs=24.1
Q ss_pred CCeEEEeccCCCchHHHHHhhhcCCcc
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGKSFL 33 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~~~~ 33 (1036)
...|+|+|.+|||||||+++|+|..|.
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~ 32 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFD 32 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCC
Confidence 457999999999999999999998764
No 244
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.78 E-value=0.0056 Score=59.74 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=22.3
Q ss_pred CCeEEEeccCCCchHHHHHhhhcCCccc
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGKSFLP 34 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~~~~p 34 (1036)
...|++||.+|||||||++++.|..+-+
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~ 29 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGP 29 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccC
Confidence 4579999999999999999999977544
No 245
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=95.76 E-value=0.0054 Score=69.69 Aligned_cols=39 Identities=33% Similarity=0.433 Sum_probs=24.3
Q ss_pred CCCeEEEeccCCCchHHHHHhhhcCCcccccCCcccccc
Q psy5059 6 QLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRP 44 (1036)
Q Consensus 6 ~lp~i~vvg~~~~gkss~~~~~~g~~~~pr~~~~~trrp 44 (1036)
.+|.|++||.+|||||||||+|.|..+.....-..|+-|
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~ 216 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSP 216 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCC
Confidence 468899999999999999999999876333332334434
No 246
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.75 E-value=0.0056 Score=66.19 Aligned_cols=28 Identities=25% Similarity=0.527 Sum_probs=25.6
Q ss_pred CCCCeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 5 IQLPQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 5 ~~lp~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
|..+.|+++|.+|||||||+|+|+|..+
T Consensus 1 m~~~~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 1 MVLKTVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp CCCEEEEEEECSSSSHHHHHHHHHTTCE
T ss_pred CceeEEEEECCCCCCHHHHHHHHhCCCc
Confidence 4568999999999999999999999876
No 247
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.75 E-value=0.0085 Score=60.08 Aligned_cols=29 Identities=31% Similarity=0.434 Sum_probs=25.7
Q ss_pred CCCeEEEeccCCCchHHHHHhhhcCCccc
Q psy5059 6 QLPQIVVVGTQSSGKSSVIESLVGKSFLP 34 (1036)
Q Consensus 6 ~lp~i~vvg~~~~gkss~~~~~~g~~~~p 34 (1036)
....|+|||.+|||||||+++|+|..|.+
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~ 34 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHE 34 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCC
Confidence 45689999999999999999999988754
No 248
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.73 E-value=0.0051 Score=66.37 Aligned_cols=29 Identities=21% Similarity=0.505 Sum_probs=25.2
Q ss_pred CCCCeEEEeccCCCchHHHHHhhhcCCcc
Q psy5059 5 IQLPQIVVVGTQSSGKSSVIESLVGKSFL 33 (1036)
Q Consensus 5 ~~lp~i~vvg~~~~gkss~~~~~~g~~~~ 33 (1036)
..-+.|++||.+|||||||||+|+|..+.
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~ 31 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQY 31 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCc
Confidence 34468999999999999999999997764
No 249
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.72 E-value=0.0049 Score=62.57 Aligned_cols=31 Identities=23% Similarity=0.497 Sum_probs=26.7
Q ss_pred CCCCCeEEEeccCCCchHHHHHhhhcCCccc
Q psy5059 4 AIQLPQIVVVGTQSSGKSSVIESLVGKSFLP 34 (1036)
Q Consensus 4 ~~~lp~i~vvg~~~~gkss~~~~~~g~~~~p 34 (1036)
....+.|+|||.+|||||||+++|+|..|.+
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~ 41 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVE 41 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCT
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCC
Confidence 4556799999999999999999999987643
No 250
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.71 E-value=0.0086 Score=59.94 Aligned_cols=28 Identities=25% Similarity=0.431 Sum_probs=25.0
Q ss_pred CCCCeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 5 IQLPQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 5 ~~lp~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
-..|.|+|||.+|||||||+|+|+|..+
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~ 48 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKI 48 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCcc
Confidence 3467999999999999999999999774
No 251
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.71 E-value=0.0058 Score=59.27 Aligned_cols=27 Identities=30% Similarity=0.534 Sum_probs=23.9
Q ss_pred CeEEEeccCCCchHHHHHhhhcCCccc
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVGKSFLP 34 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g~~~~p 34 (1036)
-.|+|||.+|||||||++++++..|.+
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~~ 30 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFIE 30 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCS
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCcc
Confidence 479999999999999999999977643
No 252
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.68 E-value=0.0059 Score=59.50 Aligned_cols=27 Identities=30% Similarity=0.555 Sum_probs=24.1
Q ss_pred CeEEEeccCCCchHHHHHhhhcCCccc
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVGKSFLP 34 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g~~~~p 34 (1036)
..|+|+|.+|||||||+++|+|..+.+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~ 30 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAE 30 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCT
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 469999999999999999999987654
No 253
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.64 E-value=0.0065 Score=67.04 Aligned_cols=30 Identities=27% Similarity=0.411 Sum_probs=25.5
Q ss_pred CCCCeEEEeccCCCchHHHHHhhhcCCccc
Q psy5059 5 IQLPQIVVVGTQSSGKSSVIESLVGKSFLP 34 (1036)
Q Consensus 5 ~~lp~i~vvg~~~~gkss~~~~~~g~~~~p 34 (1036)
+.-+.|++||++|||||||+|+|+|..+-+
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i 35 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISI 35 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEE
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccc
Confidence 344689999999999999999999977543
No 254
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.61 E-value=0.0057 Score=61.58 Aligned_cols=27 Identities=37% Similarity=0.604 Sum_probs=24.8
Q ss_pred CCCeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 6 QLPQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 6 ~lp~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
..+.|+|||.+||||||++++|.|..+
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 457999999999999999999999876
No 255
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.59 E-value=0.0087 Score=61.14 Aligned_cols=30 Identities=27% Similarity=0.558 Sum_probs=25.8
Q ss_pred CCCeEEEeccCCCchHHHHHhhhcCCcccc
Q psy5059 6 QLPQIVVVGTQSSGKSSVIESLVGKSFLPR 35 (1036)
Q Consensus 6 ~lp~i~vvg~~~~gkss~~~~~~g~~~~pr 35 (1036)
..+.|+|||.+|||||||+++|+|..|.+.
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~ 48 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPS 48 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCCCS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcc
Confidence 356899999999999999999999887543
No 256
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.59 E-value=0.0078 Score=59.28 Aligned_cols=28 Identities=36% Similarity=0.470 Sum_probs=24.8
Q ss_pred CeEEEeccCCCchHHHHHhhhcCCcccc
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVGKSFLPR 35 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g~~~~pr 35 (1036)
..|+|||.+|||||||+++|+|..|.+.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~~~ 42 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFDNT 42 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC
Confidence 4799999999999999999999877543
No 257
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.59 E-value=0.006 Score=59.57 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=22.6
Q ss_pred CeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
..|+|||.+|||||||+++|+|..|
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~ 28 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTF 28 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4799999999999999999999665
No 258
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.58 E-value=0.0051 Score=60.74 Aligned_cols=27 Identities=30% Similarity=0.570 Sum_probs=23.9
Q ss_pred CCCeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 6 QLPQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 6 ~lp~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
..+.|+|||.+|||||||+++++|..|
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~ 32 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKF 32 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCC
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCC
Confidence 346899999999999999999998765
No 259
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.56 E-value=0.0056 Score=61.16 Aligned_cols=24 Identities=33% Similarity=0.714 Sum_probs=21.9
Q ss_pred CeEEEeccCCCchHHHHHhhhcCC
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
..|++||.+|||||||+++|+|..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999865
No 260
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.56 E-value=0.0068 Score=59.32 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=22.1
Q ss_pred CCeEEEeccCCCchHHHHHhhhcCCcc
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGKSFL 33 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~~~~ 33 (1036)
+..|++||.+|||||||++++.|..+-
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~ 28 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGD 28 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC---
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCc
Confidence 457999999999999999999986653
No 261
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.54 E-value=0.0054 Score=67.76 Aligned_cols=27 Identities=26% Similarity=0.481 Sum_probs=23.8
Q ss_pred CCCeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 6 QLPQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 6 ~lp~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
.-..|++||.+|||||||+|+|+|..+
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~ 32 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKV 32 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCce
Confidence 345799999999999999999999765
No 262
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.54 E-value=0.009 Score=58.99 Aligned_cols=28 Identities=18% Similarity=0.530 Sum_probs=25.0
Q ss_pred CCeEEEeccCCCchHHHHHhhhcCCccc
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGKSFLP 34 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~~~~p 34 (1036)
...|+|+|.+|||||||+++|+|..|.+
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~~~~ 35 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDKYSQ 35 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCT
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcCCc
Confidence 4689999999999999999999987654
No 263
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.52 E-value=0.0097 Score=58.16 Aligned_cols=28 Identities=21% Similarity=0.405 Sum_probs=24.7
Q ss_pred CeEEEeccCCCchHHHHHhhhcCCcccc
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVGKSFLPR 35 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g~~~~pr 35 (1036)
..|+|||.+|||||||+++++|..+.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~~ 34 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENKFNDK 34 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCCSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCcC
Confidence 5799999999999999999999876543
No 264
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.52 E-value=0.006 Score=60.22 Aligned_cols=28 Identities=29% Similarity=0.484 Sum_probs=24.7
Q ss_pred CCCeEEEeccCCCchHHHHHhhhcCCcc
Q psy5059 6 QLPQIVVVGTQSSGKSSVIESLVGKSFL 33 (1036)
Q Consensus 6 ~lp~i~vvg~~~~gkss~~~~~~g~~~~ 33 (1036)
..+.|+|||.+|||||||+++|+|..|.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~~ 35 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYFV 35 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcCc
Confidence 4468999999999999999999998654
No 265
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=95.51 E-value=0.0093 Score=71.47 Aligned_cols=28 Identities=32% Similarity=0.506 Sum_probs=26.0
Q ss_pred CCCeEEEeccCCCchHHHHHhhhcCCcc
Q psy5059 6 QLPQIVVVGTQSSGKSSVIESLVGKSFL 33 (1036)
Q Consensus 6 ~lp~i~vvg~~~~gkss~~~~~~g~~~~ 33 (1036)
..|.|+|||.+|||||||+|+|+|..+.
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~ 91 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVP 91 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccc
Confidence 5699999999999999999999998874
No 266
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.50 E-value=0.011 Score=57.54 Aligned_cols=27 Identities=37% Similarity=0.497 Sum_probs=24.0
Q ss_pred CeEEEeccCCCchHHHHHhhhcCCccc
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVGKSFLP 34 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g~~~~p 34 (1036)
..|+|||.+|||||||+++|+|..+.+
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~~~~ 32 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGIFTK 32 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCCC
Confidence 579999999999999999999977643
No 267
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.49 E-value=0.0063 Score=59.31 Aligned_cols=27 Identities=30% Similarity=0.461 Sum_probs=23.7
Q ss_pred CCeEEEeccCCCchHHHHHhhhcCCcc
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGKSFL 33 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~~~~ 33 (1036)
-..|+|||.+|||||||+++|++..+.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~ 32 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFH 32 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 357999999999999999999986653
No 268
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.48 E-value=0.0072 Score=60.18 Aligned_cols=27 Identities=33% Similarity=0.562 Sum_probs=23.9
Q ss_pred CeEEEeccCCCchHHHHHhhhcCCccc
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVGKSFLP 34 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g~~~~p 34 (1036)
..|+|||.+|||||||+++|+|..+.+
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~~~~ 31 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNHFVD 31 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCC
Confidence 369999999999999999999977643
No 269
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.48 E-value=0.011 Score=65.48 Aligned_cols=29 Identities=24% Similarity=0.507 Sum_probs=25.0
Q ss_pred CCCeEEEeccCCCchHHHHHhhhcCCccc
Q psy5059 6 QLPQIVVVGTQSSGKSSVIESLVGKSFLP 34 (1036)
Q Consensus 6 ~lp~i~vvg~~~~gkss~~~~~~g~~~~p 34 (1036)
+...|++||.+|||||||+|+|+|..+..
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i 37 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSI 37 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccc
Confidence 34579999999999999999999977643
No 270
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.43 E-value=0.0061 Score=61.48 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=23.9
Q ss_pred CCCCeEEEeccCCCchHHHHHhhhcCCcc
Q psy5059 5 IQLPQIVVVGTQSSGKSSVIESLVGKSFL 33 (1036)
Q Consensus 5 ~~lp~i~vvg~~~~gkss~~~~~~g~~~~ 33 (1036)
-..+.|+|||.+|||||||+++|+|..|.
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~ 43 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSS 43 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC--
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCc
Confidence 34578999999999999999999987753
No 271
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.41 E-value=0.007 Score=68.71 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=22.2
Q ss_pred CeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
..|++||.||||||||||+|.|..+
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~ 27 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGI 27 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Confidence 4799999999999999999999664
No 272
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=95.40 E-value=0.0059 Score=70.20 Aligned_cols=39 Identities=21% Similarity=0.125 Sum_probs=22.2
Q ss_pred eEEEeccCCCchHHHHHhhhcCCcccccCCccccccEEE
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLIL 47 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~~~pr~~~~~trrpl~l 47 (1036)
+|++||.||||||||||+|+|..........+|+.|..-
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g 40 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVG 40 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------CCEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceE
Confidence 689999999999999999999763222222345555443
No 273
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.40 E-value=0.0064 Score=59.18 Aligned_cols=25 Identities=32% Similarity=0.499 Sum_probs=22.6
Q ss_pred CeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
..|++||.+|||||||++++++..+
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~ 28 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIF 28 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4799999999999999999998655
No 274
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.40 E-value=0.01 Score=60.30 Aligned_cols=29 Identities=28% Similarity=0.598 Sum_probs=25.6
Q ss_pred CCeEEEeccCCCchHHHHHhhhcCCcccc
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGKSFLPR 35 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~~~~pr 35 (1036)
...|+|||.+|||||||+++|+|..|.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~ 36 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQ 36 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCC
Confidence 45899999999999999999999887654
No 275
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=95.38 E-value=0.0068 Score=72.99 Aligned_cols=26 Identities=31% Similarity=0.556 Sum_probs=23.3
Q ss_pred CCCeEEEeccCCCchHHHHHhhhcCC
Q psy5059 6 QLPQIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 6 ~lp~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
+.+.|+|||.||||||||+|+|+|..
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 34678999999999999999999965
No 276
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.38 E-value=0.0079 Score=58.87 Aligned_cols=26 Identities=19% Similarity=0.372 Sum_probs=23.3
Q ss_pred CCeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
-..|+|+|.+|||||||++++.+..|
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~~ 32 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGEV 32 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46899999999999999999988664
No 277
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.37 E-value=0.0077 Score=60.58 Aligned_cols=29 Identities=21% Similarity=0.429 Sum_probs=25.3
Q ss_pred CCCeEEEeccCCCchHHHHHhhhcCCccc
Q psy5059 6 QLPQIVVVGTQSSGKSSVIESLVGKSFLP 34 (1036)
Q Consensus 6 ~lp~i~vvg~~~~gkss~~~~~~g~~~~p 34 (1036)
....|+|||.+|||||||+++|++..|.+
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~ 47 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPD 47 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 44689999999999999999999977643
No 278
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.34 E-value=0.0064 Score=61.97 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=21.9
Q ss_pred CCeEEEeccCCCchHHHHHhhhcC
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGK 30 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~ 30 (1036)
...|++||.+|||||||+++++|.
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999984
No 279
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.33 E-value=0.0076 Score=59.64 Aligned_cols=26 Identities=23% Similarity=0.502 Sum_probs=23.7
Q ss_pred CeEEEeccCCCchHHHHHhhhcCCcc
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVGKSFL 33 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g~~~~ 33 (1036)
..|+|||.+|||||||+++|.|..+.
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~~~ 36 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGAFL 36 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCC
Confidence 47999999999999999999998764
No 280
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.32 E-value=0.0096 Score=59.32 Aligned_cols=29 Identities=28% Similarity=0.559 Sum_probs=25.5
Q ss_pred CCeEEEeccCCCchHHHHHhhhcCCcccc
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGKSFLPR 35 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~~~~pr 35 (1036)
...|+|+|.+|||||||+++|+|..|.+.
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~ 38 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDD 38 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC
Confidence 46899999999999999999999887543
No 281
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.31 E-value=0.0068 Score=58.57 Aligned_cols=26 Identities=35% Similarity=0.568 Sum_probs=23.1
Q ss_pred CeEEEeccCCCchHHHHHhhhcCCcc
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVGKSFL 33 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g~~~~ 33 (1036)
..|+|+|.+||||||+++++.|..+.
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~ 29 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFV 29 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCc
Confidence 46999999999999999999987653
No 282
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.27 E-value=0.0091 Score=58.77 Aligned_cols=27 Identities=22% Similarity=0.565 Sum_probs=24.3
Q ss_pred CCeEEEeccCCCchHHHHHhhhcCCcc
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGKSFL 33 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~~~~ 33 (1036)
...|+|||.+|||||||+++|.|..|.
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~~~ 41 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKKFM 41 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 458999999999999999999998764
No 283
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.26 E-value=0.0084 Score=59.50 Aligned_cols=31 Identities=23% Similarity=0.497 Sum_probs=25.5
Q ss_pred CCCCCeEEEeccCCCchHHHHHhhhcCCccc
Q psy5059 4 AIQLPQIVVVGTQSSGKSSVIESLVGKSFLP 34 (1036)
Q Consensus 4 ~~~lp~i~vvg~~~~gkss~~~~~~g~~~~p 34 (1036)
.+....|+|||.+|||||||+++|++..|.+
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~ 45 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVE 45 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCC
Confidence 3455689999999999999999999977643
No 284
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=95.26 E-value=0.0081 Score=65.78 Aligned_cols=25 Identities=28% Similarity=0.533 Sum_probs=22.6
Q ss_pred CeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
..|++||.||||||||+|+|+|...
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred ceEEEEecCCCchHHHHHHHhcCce
Confidence 3699999999999999999999664
No 285
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.26 E-value=0.0079 Score=59.41 Aligned_cols=27 Identities=33% Similarity=0.570 Sum_probs=23.5
Q ss_pred CCCeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 6 QLPQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 6 ~lp~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
.-..|+|||.+|||||||+++|.+..|
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~ 31 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETF 31 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGT
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcC
Confidence 346899999999999999999998654
No 286
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.24 E-value=0.0083 Score=60.48 Aligned_cols=27 Identities=19% Similarity=0.503 Sum_probs=23.9
Q ss_pred CCeEEEeccCCCchHHHHHhhhcCCcc
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGKSFL 33 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~~~~ 33 (1036)
...|+|||.+|||||||+++|+|..|.
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~ 51 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNEFS 51 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCC
Confidence 357999999999999999999997754
No 287
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.23 E-value=0.0084 Score=59.82 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=23.9
Q ss_pred CCeEEEeccCCCchHHHHHhhhcCCcc
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGKSFL 33 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~~~~ 33 (1036)
...|+|||.+|||||||+++|.|..|.
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~~~ 37 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGKFN 37 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 358999999999999999999997653
No 288
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.21 E-value=0.0086 Score=60.25 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=23.6
Q ss_pred CeEEEeccCCCchHHHHHhhhcCCcc
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVGKSFL 33 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g~~~~ 33 (1036)
..|+|||.+|||||||+++|+|..|.
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~ 48 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDSFT 48 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 48999999999999999999987763
No 289
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.19 E-value=0.0073 Score=60.60 Aligned_cols=31 Identities=26% Similarity=0.450 Sum_probs=24.1
Q ss_pred CCCCCCCeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 2 TDAIQLPQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 2 ~~~~~lp~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
+..-.-..|+|||.+|||||||+++|++..|
T Consensus 2 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~ 32 (184)
T 1m7b_A 2 SNQNVKCKIVVVGDSQCGKTALLHVFAKDCF 32 (184)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred CCCceEEEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3333446899999999999999999999765
No 290
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.17 E-value=0.0072 Score=68.19 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=23.0
Q ss_pred CCCeEEEeccCCCchHHHHHhhhcC
Q psy5059 6 QLPQIVVVGTQSSGKSSVIESLVGK 30 (1036)
Q Consensus 6 ~lp~i~vvg~~~~gkss~~~~~~g~ 30 (1036)
+.|.|+++|.||||||||||+|+|.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3689999999999999999999994
No 291
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.17 E-value=0.0073 Score=61.57 Aligned_cols=28 Identities=25% Similarity=0.507 Sum_probs=24.5
Q ss_pred CCCeEEEeccCCCchHHHHHhhhcCCcc
Q psy5059 6 QLPQIVVVGTQSSGKSSVIESLVGKSFL 33 (1036)
Q Consensus 6 ~lp~i~vvg~~~~gkss~~~~~~g~~~~ 33 (1036)
....|+|||.+|||||||+++|+|..|.
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~ 50 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFS 50 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCC
Confidence 3457999999999999999999997753
No 292
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.16 E-value=0.0074 Score=58.76 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=21.8
Q ss_pred eEEEeccCCCchHHHHHhhhcCCc
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
.|+++|.+|||||||++++++..|
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~ 25 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEI 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHcCCc
Confidence 589999999999999999998654
No 293
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.16 E-value=0.0072 Score=59.89 Aligned_cols=28 Identities=32% Similarity=0.439 Sum_probs=24.3
Q ss_pred CCCeEEEeccCCCchHHHHHhhhcCCcc
Q psy5059 6 QLPQIVVVGTQSSGKSSVIESLVGKSFL 33 (1036)
Q Consensus 6 ~lp~i~vvg~~~~gkss~~~~~~g~~~~ 33 (1036)
+--.|++||.+|||||||++++++..|.
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~ 33 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQ 33 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC
Confidence 3347999999999999999999997764
No 294
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.14 E-value=0.014 Score=58.61 Aligned_cols=28 Identities=14% Similarity=0.411 Sum_probs=24.9
Q ss_pred CeEEEeccCCCchHHHHHhhhcCCcccc
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVGKSFLPR 35 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g~~~~pr 35 (1036)
..|+|+|.+|||||||+++|++..+.+.
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~~~~~ 44 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDTYTES 44 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCC
Confidence 5799999999999999999999877553
No 295
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.10 E-value=0.0093 Score=59.98 Aligned_cols=23 Identities=26% Similarity=0.632 Sum_probs=21.2
Q ss_pred CeEEEeccCCCchHHHHHhhhcC
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVGK 30 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g~ 30 (1036)
-.|++||.+|||||||+++++|.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999999984
No 296
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.07 E-value=0.0092 Score=59.66 Aligned_cols=27 Identities=19% Similarity=0.445 Sum_probs=23.6
Q ss_pred CCCeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 6 QLPQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 6 ~lp~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
.-..|+|||.+|||||||+++|+|..|
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~ 46 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEV 46 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSC
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC
Confidence 345899999999999999999999765
No 297
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.07 E-value=0.01 Score=59.61 Aligned_cols=29 Identities=31% Similarity=0.506 Sum_probs=24.6
Q ss_pred CCCCeEEEeccCCCchHHHHHhhhcCCcc
Q psy5059 5 IQLPQIVVVGTQSSGKSSVIESLVGKSFL 33 (1036)
Q Consensus 5 ~~lp~i~vvg~~~~gkss~~~~~~g~~~~ 33 (1036)
+.-..|+|||.+|||||||+++|+|..+.
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~ 47 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFV 47 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCC
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCc
Confidence 34458999999999999999999987653
No 298
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=95.07 E-value=0.011 Score=67.76 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=27.7
Q ss_pred CeEEEeccCCCchHHHHHhhhcCCc-ccccCCccccccE
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVGKSF-LPRGIGIVTRRPL 45 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g~~~-~pr~~~~~trrpl 45 (1036)
..|++||.+|||||||||+|.|..+ .......||+.|.
T Consensus 21 ~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~ 59 (392)
T 1ni3_A 21 LKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPE 59 (392)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecce
Confidence 4799999999999999999999765 2223333444443
No 299
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.06 E-value=0.01 Score=59.50 Aligned_cols=27 Identities=22% Similarity=0.534 Sum_probs=23.8
Q ss_pred CCCeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 6 QLPQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 6 ~lp~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
..+.|++||.+|||||||+++++|..+
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~ 41 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDI 41 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCC
Confidence 457899999999999999999998643
No 300
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.05 E-value=0.01 Score=58.78 Aligned_cols=25 Identities=32% Similarity=0.618 Sum_probs=22.9
Q ss_pred CeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
..|+|||.+|||||||+++|++..+
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~~ 37 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQF 37 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCC
Confidence 4799999999999999999998765
No 301
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.05 E-value=0.011 Score=60.84 Aligned_cols=27 Identities=37% Similarity=0.604 Sum_probs=25.0
Q ss_pred CCCeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 6 QLPQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 6 ~lp~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
..|.|+++|.+|||||||+++|++..|
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~ 37 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSV 37 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 568999999999999999999999876
No 302
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.03 E-value=0.017 Score=62.38 Aligned_cols=41 Identities=27% Similarity=0.447 Sum_probs=29.9
Q ss_pred CCeEEEeccCCCchHHHHHhhhcCCcccccC-CccccccEEE
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGKSFLPRGI-GIVTRRPLIL 47 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~~~~pr~~-~~~trrpl~l 47 (1036)
-+.|+|||.+|||||||+|+|+|..+.+.+. ..+|+.+...
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~ 80 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMV 80 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEE
Confidence 4689999999999999999999988654332 2234444433
No 303
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.03 E-value=0.0077 Score=61.48 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=22.4
Q ss_pred CCeEEEeccCCCchHHHHHhhhcCC
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
...|+|||.+|||||||+++++|..
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~~~~ 47 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFGGLQ 47 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTCCEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHhcc
Confidence 4589999999999999999998754
No 304
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.02 E-value=0.013 Score=60.26 Aligned_cols=30 Identities=20% Similarity=0.304 Sum_probs=25.0
Q ss_pred CCCeEEEeccCCCchHHHHHhhhcCCcccc
Q psy5059 6 QLPQIVVVGTQSSGKSSVIESLVGKSFLPR 35 (1036)
Q Consensus 6 ~lp~i~vvg~~~~gkss~~~~~~g~~~~pr 35 (1036)
.-+.|+|||.+|||||||+++|++..|.+.
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~ 35 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDT 35 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCCB
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccc
Confidence 347899999999999999999999876543
No 305
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.99 E-value=0.012 Score=59.88 Aligned_cols=27 Identities=30% Similarity=0.518 Sum_probs=24.2
Q ss_pred CCeEEEeccCCCchHHHHHhhhcCCcc
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGKSFL 33 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~~~~ 33 (1036)
...|+|||.+|||||||+++|+|..|.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~ 34 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFT 34 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 468999999999999999999997763
No 306
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.97 E-value=0.011 Score=61.66 Aligned_cols=25 Identities=28% Similarity=0.518 Sum_probs=22.3
Q ss_pred CCeEEEeccCCCchHHHHHhhhcCC
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
...|++||.+|||||||+++++|..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3579999999999999999999844
No 307
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.97 E-value=0.011 Score=59.66 Aligned_cols=25 Identities=28% Similarity=0.546 Sum_probs=22.7
Q ss_pred CeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
..|+|||.+|||||||+++|+|..|
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~~ 47 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQF 47 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4799999999999999999998665
No 308
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.95 E-value=0.019 Score=61.20 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=24.9
Q ss_pred CCCeEEEeccCCCchHHHHHhhhcCCccc
Q psy5059 6 QLPQIVVVGTQSSGKSSVIESLVGKSFLP 34 (1036)
Q Consensus 6 ~lp~i~vvg~~~~gkss~~~~~~g~~~~p 34 (1036)
..+.|+|||.+|||||||+|+|+|....+
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~ 49 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFE 49 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSC
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcc
Confidence 34689999999999999999999977444
No 309
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.92 E-value=0.0089 Score=60.33 Aligned_cols=27 Identities=22% Similarity=0.495 Sum_probs=23.8
Q ss_pred CCeEEEeccCCCchHHHHHhhhcCCcc
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGKSFL 33 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~~~~ 33 (1036)
...|+|||.+|||||||+++|+|..|.
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~~~ 49 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDTFT 49 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHTTC
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCCCC
Confidence 357999999999999999999987653
No 310
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.92 E-value=0.015 Score=58.85 Aligned_cols=27 Identities=26% Similarity=0.644 Sum_probs=20.9
Q ss_pred CeEEEeccCCCchHHHHHhhhcCCccc
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVGKSFLP 34 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g~~~~p 34 (1036)
..|+|||.+|||||||+++|+|..|.+
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~~~~~ 53 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDDTFCE 53 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC-----
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCc
Confidence 469999999999999999999977654
No 311
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.90 E-value=0.012 Score=59.39 Aligned_cols=27 Identities=26% Similarity=0.506 Sum_probs=23.7
Q ss_pred CCeEEEeccCCCchHHHHHhhhcCCcc
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGKSFL 33 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~~~~ 33 (1036)
...|+|||.+|||||||+++|++..|.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~ 47 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKRFQ 47 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCC
Confidence 347999999999999999999987653
No 312
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.87 E-value=0.011 Score=59.49 Aligned_cols=26 Identities=35% Similarity=0.485 Sum_probs=23.2
Q ss_pred CCeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
-..|+|||.+|||||||+++|+|..|
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~~~ 33 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKGTF 33 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred eeEEEEECCCCCcHHHHHHHHHcCCC
Confidence 35899999999999999999999654
No 313
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.87 E-value=0.012 Score=59.60 Aligned_cols=26 Identities=23% Similarity=0.478 Sum_probs=23.6
Q ss_pred CCeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
-..|+|||.+|||||||+++|++..|
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~~ 53 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKRF 53 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC
Confidence 45899999999999999999999765
No 314
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.86 E-value=0.012 Score=58.44 Aligned_cols=26 Identities=35% Similarity=0.468 Sum_probs=23.0
Q ss_pred CCeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
...|+|||.+|||||||+++|++..|
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~~~ 43 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQKIF 43 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC
Confidence 34789999999999999999998765
No 315
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.85 E-value=0.012 Score=58.94 Aligned_cols=26 Identities=15% Similarity=0.428 Sum_probs=23.3
Q ss_pred CCeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
-..|+|||.+|||||||+++|++..|
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~~~ 41 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMNEV 41 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSC
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46899999999999999999998665
No 316
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.85 E-value=0.012 Score=59.26 Aligned_cols=25 Identities=24% Similarity=0.551 Sum_probs=22.9
Q ss_pred CeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
-.|+|||.+|||||||++++++..|
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~~~ 46 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTKRF 46 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred EEEEEECCCCCcHHHHHHHHHhCCC
Confidence 3799999999999999999998765
No 317
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=94.82 E-value=0.0095 Score=60.89 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=21.5
Q ss_pred CeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
..|++||.+|||||||+++|+|..|
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g~~~ 51 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTNQKS 51 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC--
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3699999999999999999999764
No 318
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=94.82 E-value=0.012 Score=67.62 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=21.0
Q ss_pred CeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
..|++||.+|||||||||+|.|..+
T Consensus 23 ~kvgIVG~pnvGKSTL~n~Ltg~~~ 47 (396)
T 2ohf_A 23 LKIGIVGLPNVGKSTFFNVLTNSQA 47 (396)
T ss_dssp CCEEEECCSSSSHHHHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCc
Confidence 4799999999999999999999765
No 319
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.80 E-value=0.012 Score=59.50 Aligned_cols=26 Identities=27% Similarity=0.488 Sum_probs=23.4
Q ss_pred CCeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
...|+|||.+|||||||+++|+|..|
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~~ 48 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDHF 48 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCC
Confidence 34799999999999999999999775
No 320
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.77 E-value=0.012 Score=63.64 Aligned_cols=26 Identities=35% Similarity=0.530 Sum_probs=22.3
Q ss_pred eEEEeccCCCchHHHHHhhhcCCccc
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKSFLP 34 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~~~p 34 (1036)
.|+|||.+|||||||+|+|.|.+..+
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~~~~ 35 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTDLYS 35 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSCC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccc
Confidence 69999999999999999999876544
No 321
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.76 E-value=0.014 Score=57.97 Aligned_cols=28 Identities=32% Similarity=0.428 Sum_probs=24.2
Q ss_pred CCCCeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 5 IQLPQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 5 ~~lp~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
++-..|++||.+|||||||++++++..|
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~ 30 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAF 30 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCC
Confidence 3445799999999999999999998765
No 322
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.76 E-value=0.017 Score=58.92 Aligned_cols=28 Identities=25% Similarity=0.572 Sum_probs=21.5
Q ss_pred CCeEEEeccCCCchHHHHHhhhcCCccc
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGKSFLP 34 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~~~~p 34 (1036)
...|+|+|.+|||||||+++|++..|.+
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~ 52 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIENKFKQ 52 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-----
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCc
Confidence 3589999999999999999999977654
No 323
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.73 E-value=0.013 Score=59.49 Aligned_cols=26 Identities=35% Similarity=0.498 Sum_probs=23.7
Q ss_pred CCeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
...|+|||.+|||||||+++|+|..|
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~~~ 53 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKNEF 53 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHCCC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhCCC
Confidence 46899999999999999999999775
No 324
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=94.72 E-value=0.011 Score=60.88 Aligned_cols=25 Identities=24% Similarity=0.509 Sum_probs=22.6
Q ss_pred CeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
-.|+|||.+|||||||+|+|+|..|
T Consensus 12 ~ki~vvG~~~~GKSsli~~l~~~~~ 36 (218)
T 4djt_A 12 YKICLIGDGGVGKTTYINRVLDGRF 36 (218)
T ss_dssp EEEEEECCTTSSHHHHHCBCTTCST
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3799999999999999999998665
No 325
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.72 E-value=0.011 Score=58.77 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=23.1
Q ss_pred CCeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
-..|+|||.+|||||||++++.+..+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~~~~ 43 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQIGEV 43 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCSEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCc
Confidence 46899999999999999999997654
No 326
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.68 E-value=0.014 Score=59.44 Aligned_cols=26 Identities=27% Similarity=0.588 Sum_probs=23.7
Q ss_pred CCeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
...|++||.+|||||||+++|+|..|
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~ 30 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEF 30 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCC
Confidence 46799999999999999999999775
No 327
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.65 E-value=0.023 Score=57.83 Aligned_cols=28 Identities=18% Similarity=0.449 Sum_probs=24.7
Q ss_pred CCeEEEeccCCCchHHHHHhhhcCCccc
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGKSFLP 34 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~~~~p 34 (1036)
...|+|||.+|||||||+++|.|..|.+
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~ 35 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDTYTN 35 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCT
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 3589999999999999999999977643
No 328
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.64 E-value=0.013 Score=59.39 Aligned_cols=25 Identities=24% Similarity=0.558 Sum_probs=23.1
Q ss_pred CeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
..|++||.+|||||||+++|+|..+
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCC
Confidence 5799999999999999999999765
No 329
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.63 E-value=0.015 Score=58.66 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=24.2
Q ss_pred CCCCeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 5 IQLPQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 5 ~~lp~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
..--.|++||.+|||||||++++++..|
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~ 45 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTY 45 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3344899999999999999999998776
No 330
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.61 E-value=0.015 Score=57.54 Aligned_cols=27 Identities=26% Similarity=0.482 Sum_probs=23.9
Q ss_pred CCCeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 6 QLPQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 6 ~lp~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
....|+|||.+||||||+++++++..|
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~ 33 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTF 33 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC
Confidence 456899999999999999999998664
No 331
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.60 E-value=0.015 Score=58.59 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.9
Q ss_pred CeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
..|++||.+|||||||++++++..|
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~~ 48 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGEI 48 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCC
Confidence 4799999999999999999998775
No 332
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=94.59 E-value=0.019 Score=64.64 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=23.1
Q ss_pred CCeEEEeccCCCchHHHHHhhhcCC
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
+|.|++||.+|||||||+++|.+..
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~ 182 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAK 182 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEEC
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCC
Confidence 6789999999999999999999854
No 333
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.59 E-value=0.013 Score=58.86 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=23.1
Q ss_pred CCeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
-..|+|||.+|||||||++++.+..+
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~~~~ 47 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHLGDV 47 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCC
Confidence 46899999999999999999987654
No 334
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.59 E-value=0.013 Score=66.55 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=22.1
Q ss_pred CeEEEeccCCCchHHHHHhhhcCC
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
..|++||.+|||||||||+|.|..
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 579999999999999999999964
No 335
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.56 E-value=0.013 Score=59.01 Aligned_cols=26 Identities=23% Similarity=0.471 Sum_probs=23.0
Q ss_pred CCCeEEEeccCCCchHHHHHhhhcCC
Q psy5059 6 QLPQIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 6 ~lp~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
.-..|+|||.+|||||||+++|+|..
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999999876
No 336
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.53 E-value=0.015 Score=58.80 Aligned_cols=26 Identities=15% Similarity=0.438 Sum_probs=22.8
Q ss_pred CCeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
-..|++||.+||||||++++++|..|
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~ 48 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRL 48 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34899999999999999999998664
No 337
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.50 E-value=0.016 Score=57.80 Aligned_cols=25 Identities=16% Similarity=0.543 Sum_probs=22.4
Q ss_pred CCeEEEeccCCCchHHHHHhhhcCC
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
-..|+|+|.+|||||||+++++|..
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999999854
No 338
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.50 E-value=0.014 Score=59.82 Aligned_cols=25 Identities=28% Similarity=0.542 Sum_probs=22.8
Q ss_pred CeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
..|+|||.+|||||||+++|+|..|
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~ 50 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDEF 50 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSC
T ss_pred cEEEEECcCCCCHHHHHHHHhcCCC
Confidence 4799999999999999999999665
No 339
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.47 E-value=0.019 Score=59.06 Aligned_cols=25 Identities=16% Similarity=0.433 Sum_probs=23.2
Q ss_pred CeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
..|+|||.+|||||||+++|++..|
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~~~ 50 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDNKF 50 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSCC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCC
Confidence 4799999999999999999999776
No 340
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.43 E-value=0.017 Score=58.57 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=23.1
Q ss_pred CCeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
-..|+|||.+|||||||++++++..|
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~~~ 54 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLGEI 54 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSSCC
T ss_pred ccEEEEECCCCCCHHHHHHHHHhCCc
Confidence 35899999999999999999988664
No 341
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.42 E-value=0.012 Score=58.61 Aligned_cols=26 Identities=23% Similarity=0.510 Sum_probs=10.6
Q ss_pred CCeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
...|+|||.+|||||||++++++..|
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~~ 33 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDAF 33 (183)
T ss_dssp EEEEEEECCCCC--------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC
Confidence 35799999999999999999987554
No 342
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=94.41 E-value=0.031 Score=63.03 Aligned_cols=27 Identities=26% Similarity=0.581 Sum_probs=24.7
Q ss_pred CCCeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 6 QLPQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 6 ~lp~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
..+.|++||.+||||||++|+|+|..+
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~ 192 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKP 192 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 568999999999999999999999764
No 343
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=94.35 E-value=0.016 Score=59.17 Aligned_cols=26 Identities=19% Similarity=0.463 Sum_probs=22.0
Q ss_pred CCeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
-..|++||.+|||||||+++++|..|
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~~~ 50 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDDRL 50 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC--
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45899999999999999999998553
No 344
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.33 E-value=0.018 Score=58.38 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=21.6
Q ss_pred CCCeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 6 QLPQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 6 ~lp~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
....|+|||.+|||||||++++++..|
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~~ 45 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNGY 45 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC---
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCC
Confidence 455899999999999999999998664
No 345
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.33 E-value=0.018 Score=59.23 Aligned_cols=25 Identities=24% Similarity=0.502 Sum_probs=23.0
Q ss_pred CeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
..|+|||.+|||||||+++|++..|
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~~~ 51 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQGLF 51 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCC
Confidence 5899999999999999999998765
No 346
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.25 E-value=0.024 Score=57.75 Aligned_cols=25 Identities=24% Similarity=0.515 Sum_probs=23.1
Q ss_pred eEEEeccCCCchHHHHHhhhcCCcc
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKSFL 33 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~~~ 33 (1036)
.|+|||.+|||||||++++.+..|.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~~~ 51 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQFP 51 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC
Confidence 7999999999999999999997763
No 347
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.25 E-value=0.019 Score=59.16 Aligned_cols=25 Identities=32% Similarity=0.596 Sum_probs=23.0
Q ss_pred CeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
..|+|||.+|||||||+++|++..|
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~~~ 53 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKDCF 53 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4799999999999999999999766
No 348
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=94.24 E-value=0.02 Score=62.06 Aligned_cols=25 Identities=36% Similarity=0.709 Sum_probs=23.0
Q ss_pred CeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
..|++||.+||||||++|+|.|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 5799999999999999999998765
No 349
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.17 E-value=0.022 Score=59.03 Aligned_cols=28 Identities=21% Similarity=0.502 Sum_probs=23.6
Q ss_pred CCCCeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 5 IQLPQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 5 ~~lp~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
..-..|+|||.+|||||||+++|++..|
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~ 52 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCY 52 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCC
Confidence 3445899999999999999999999765
No 350
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.16 E-value=0.02 Score=58.56 Aligned_cols=26 Identities=35% Similarity=0.594 Sum_probs=23.3
Q ss_pred CCeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
...|+|||.+|||||||+++|++..|
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~~ 54 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGAF 54 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCCC
Confidence 35799999999999999999998765
No 351
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=94.11 E-value=0.076 Score=64.13 Aligned_cols=64 Identities=8% Similarity=0.104 Sum_probs=40.5
Q ss_pred cEEEeeccCCCchhhhhhhHHHHHHHHHhh-hhcCCCCCCCCceEEeCcCCCChh--------------hHHhhhcCCC
Q psy5059 44 PLILQLYYCPKDDREKRTAAAVINKLQDVF-NTVGTDAIQLPQIVVVGTQSSGKS--------------SVIESLVGKS 107 (1036)
Q Consensus 44 pl~l~l~~~~~~~~~~~~~~~l~~kL~~~~-~~~g~~~i~lPqIvVvG~QSsGKS--------------SlLEal~G~~ 107 (1036)
++++.+||+|........+..+.+.+.+.+ ...|...-..|-|-+-+-.+.|=. .|+++|....
T Consensus 317 ~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~ 395 (592)
T 3mca_A 317 EIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV 395 (592)
T ss_dssp CEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSC
T ss_pred eEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhc
Confidence 499999999875433344556677777776 555543223444555555555543 7999998764
No 352
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.11 E-value=0.031 Score=61.90 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.9
Q ss_pred ceEEeCcCCCChhhHHhhhcCCC
Q psy5059 85 QIVVVGTQSSGKSSVIESLVGKS 107 (1036)
Q Consensus 85 qIvVvG~QSsGKSSlLEal~G~~ 107 (1036)
-|+++|.++|||||++..|+|.-
T Consensus 104 vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 57789999999999999999974
No 353
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.03 E-value=0.022 Score=58.89 Aligned_cols=25 Identities=28% Similarity=0.558 Sum_probs=20.8
Q ss_pred CeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
..|+|||.+|||||||+++|+|..|
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~~~ 59 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADGAF 59 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC---
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCC
Confidence 3799999999999999999998654
No 354
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=94.02 E-value=0.024 Score=58.86 Aligned_cols=26 Identities=31% Similarity=0.598 Sum_probs=23.6
Q ss_pred CCeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
...|+|||.+|||||||+++|+|..|
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~~ 38 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNEF 38 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCCC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCC
Confidence 45899999999999999999999765
No 355
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.01 E-value=0.023 Score=57.19 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=22.8
Q ss_pred CeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
..|+|||.+|||||||+++|++..|
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~~ 43 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDAF 43 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3899999999999999999998765
No 356
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.87 E-value=0.046 Score=58.66 Aligned_cols=27 Identities=33% Similarity=0.594 Sum_probs=24.0
Q ss_pred CCeEEEeccCCCchHHHHHhhhcCCcc
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGKSFL 33 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~~~~ 33 (1036)
-..|++||..||||||++|+|.|..+.
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~~~ 62 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQVV 62 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSCCS
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCc
Confidence 357999999999999999999997753
No 357
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.78 E-value=0.22 Score=58.61 Aligned_cols=43 Identities=21% Similarity=0.088 Sum_probs=28.7
Q ss_pred HHHhhhccccCCceEEEEecccccCCCchhhhhhcCccccccc
Q psy5059 369 LKLAKETDVDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKL 411 (1036)
Q Consensus 369 ~~la~~~d~~g~rti~VitK~Dl~~~g~~~~~~l~~~~~~~~~ 411 (1036)
+.+++.....-.-|..|+||+|-..+|..++.++..--+|+++
T Consensus 428 l~~ak~f~~~~~itgvIlTKLD~takgG~~lsi~~~~~~PI~f 470 (503)
T 2yhs_A 428 VSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRY 470 (503)
T ss_dssp HHHHHHHHHHTCCSEEEEECGGGCSCCTHHHHHHHHHCCCEEE
T ss_pred HHHHHHHHhhcCCCEEEEEcCCCcccccHHHHHHHHHCCCEEE
Confidence 3445554444456788999999888888887776533356554
No 358
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=93.76 E-value=0.013 Score=59.50 Aligned_cols=25 Identities=16% Similarity=0.486 Sum_probs=22.6
Q ss_pred CeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
..|+|||.+|||||||+++|+|..|
T Consensus 34 ~ki~vvG~~~~GKSsli~~l~~~~~ 58 (199)
T 3l0i_B 34 FKLLLIGDSGVGKSCLLLRFADDTY 58 (199)
T ss_dssp EEEEEECCTTSCCTTTTTSSBCCCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5899999999999999999997654
No 359
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.75 E-value=0.023 Score=58.59 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=23.3
Q ss_pred CCCeEEEeccCCCchHHHHHhhhcCC
Q psy5059 6 QLPQIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 6 ~lp~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
..|.|+++|.+||||||++++|++..
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 35899999999999999999999853
No 360
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.74 E-value=0.031 Score=57.22 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=23.4
Q ss_pred CeEEEeccCCCchHHHHHhhhcCCcc
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVGKSFL 33 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g~~~~ 33 (1036)
-.|+|||.+|||||||++++++..|.
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~~~~ 56 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTNAFP 56 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC
T ss_pred EEEEEECcCCCCHHHHHHHHHhCCCC
Confidence 47999999999999999999987764
No 361
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.60 E-value=0.14 Score=57.14 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.8
Q ss_pred ceEEeCcCCCChhhHHhhhcCCC
Q psy5059 85 QIVVVGTQSSGKSSVIESLVGKS 107 (1036)
Q Consensus 85 qIvVvG~QSsGKSSlLEal~G~~ 107 (1036)
-++++|.++|||||++..|+|.-
T Consensus 131 vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 131 VIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999964
No 362
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.60 E-value=0.55 Score=51.62 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.7
Q ss_pred ceEEeCcCCCChhhHHhhhcCC
Q psy5059 85 QIVVVGTQSSGKSSVIESLVGK 106 (1036)
Q Consensus 85 qIvVvG~QSsGKSSlLEal~G~ 106 (1036)
-|+++|.+++|||+++..|++.
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~ 121 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYF 121 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5778999999999999999865
No 363
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=93.55 E-value=0.031 Score=57.19 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=23.3
Q ss_pred CCeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
...|+|+|.+|||||||++++++..|
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~~ 34 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNKF 34 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35899999999999999999998765
No 364
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=93.42 E-value=0.018 Score=67.94 Aligned_cols=25 Identities=28% Similarity=0.554 Sum_probs=22.9
Q ss_pred CeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
+.|++||.+|||||||+|+|+|.++
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~ 268 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDR 268 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTB
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCC
Confidence 5799999999999999999999764
No 365
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=93.42 E-value=0.23 Score=60.08 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=21.1
Q ss_pred CCeEEEeccCCCchHHHHHhhhc
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVG 29 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g 29 (1036)
...|++||.+|+|||||+++|++
T Consensus 167 ~lkV~ivG~~n~GKSTLin~Ll~ 189 (611)
T 3izq_1 167 HLSFVVLGHVDAGKSTLMGRLLY 189 (611)
T ss_dssp CCEEEEECCSSSCHHHHHHHHHS
T ss_pred ceEEEEEECCCCCHHHHHHHHHH
Confidence 45899999999999999999985
No 366
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.41 E-value=0.035 Score=56.26 Aligned_cols=25 Identities=36% Similarity=0.594 Sum_probs=21.9
Q ss_pred CCCeEEEeccCCCchHHHHHhhhcC
Q psy5059 6 QLPQIVVVGTQSSGKSSVIESLVGK 30 (1036)
Q Consensus 6 ~lp~i~vvg~~~~gkss~~~~~~g~ 30 (1036)
....|++||.+|||||||++.+.|.
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhc
Confidence 4568999999999999999999874
No 367
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.38 E-value=0.033 Score=55.69 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.5
Q ss_pred CeEEEeccCCCchHHHHHhhhcC
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVGK 30 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g~ 30 (1036)
..|+|||.+|||||||++.+.|.
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHhh
Confidence 47999999999999999888774
No 368
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.35 E-value=0.044 Score=63.33 Aligned_cols=30 Identities=30% Similarity=0.416 Sum_probs=25.4
Q ss_pred eEEEeccCCCchHHHHHhhhcCCcccccCC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKSFLPRGIG 38 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~~~pr~~~ 38 (1036)
.|++||..|||||||++.|+|..+.+.|.|
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g~~~~~~~~~ 62 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLTDLYSPEYP 62 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTCCCCCCCCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCCCC
Confidence 479999999999999999999887555543
No 369
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=93.34 E-value=0.18 Score=57.15 Aligned_cols=96 Identities=10% Similarity=0.120 Sum_probs=61.9
Q ss_pred HHHHHhhhcCCCceEEEEEecCccccchHHHHHhhhccccCCceEEEEecccccCCCchhhhhhcCcccccccccccccc
Q psy5059 339 KQLVLHYISNPNSIILAVVTANTDMATSESLKLAKETDVDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKLDVDGRRT 418 (1036)
Q Consensus 339 ~~~~~~y~~~~~~~~~~~v~~~~d~~~~~~~~la~~~d~~g~rti~VitK~Dl~~~g~~~~~~l~~~~~~~~~~~~~~~~ 418 (1036)
..++..|.. ..++++.|||+.. ++.+-...+.+.+. +++.|.|+||.||.++....
T Consensus 62 ~~~L~~~~~-~~~lil~VvD~~d-~~~s~~~~l~~~l~--~~piilV~NK~DLl~~~~~~-------------------- 117 (369)
T 3ec1_A 62 LSMLHRIGE-SKALVVNIVDIFD-FNGSFIPGLPRFAA--DNPILLVGNKADLLPRSVKY-------------------- 117 (369)
T ss_dssp HHHHHHHHH-HCCEEEEEEETTC-SGGGCCSSHHHHCT--TSCEEEEEECGGGSCTTCCH--------------------
T ss_pred HHHHHHhhc-cCcEEEEEEECCC-CCCchhhHHHHHhC--CCCEEEEEEChhcCCCccCH--------------------
Confidence 344444432 4568999999875 33333333444442 78999999999998764321
Q ss_pred hHHHHHHHHHHhhccCCCc--ceeeeecccchhhhHHHHHHhhhc
Q psy5059 419 YIEAQIKQLVLHYISNPNS--IILAVVTANTDMATSESLKLAKET 461 (1036)
Q Consensus 419 ~~~~~l~~~v~~~i~~~~~--ipla~ISA~td~~~qeil~la~~v 461 (1036)
..+.+.+..+++...+ .....+||+++.+..++++...+.
T Consensus 118 ---~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~ 159 (369)
T 3ec1_A 118 ---PKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRY 159 (369)
T ss_dssp ---HHHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhh
Confidence 2233334444443333 467789999999999999887654
No 370
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.31 E-value=0.031 Score=57.89 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=24.1
Q ss_pred CCCeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 6 QLPQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 6 ~lp~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
..|.|+|||.+||||||+++++++..|
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 468999999999999999999998654
No 371
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=93.25 E-value=0.02 Score=58.03 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=5.1
Q ss_pred CeEEEeccCCCchHHHHHhhhcC
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVGK 30 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g~ 30 (1036)
..|+|+|.+|||||||+++|+|.
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999986
No 372
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=93.20 E-value=0.17 Score=58.68 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=21.0
Q ss_pred CCCeEEEeccCCCchHHHHHhhhc
Q psy5059 6 QLPQIVVVGTQSSGKSSVIESLVG 29 (1036)
Q Consensus 6 ~lp~i~vvg~~~~gkss~~~~~~g 29 (1036)
+...|++||.+++|||||+++|++
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~ 39 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMY 39 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHH
Confidence 456899999999999999999943
No 373
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=93.15 E-value=0.041 Score=57.70 Aligned_cols=24 Identities=42% Similarity=0.671 Sum_probs=22.3
Q ss_pred eEEEeccCCCchHHHHHhhhcCCc
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
.|+|||.+|||||||++++++-.|
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~~f 38 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYDSF 38 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCcCHHHHHHHHHhCCC
Confidence 699999999999999999998776
No 374
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.02 E-value=0.035 Score=64.27 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=22.2
Q ss_pred CeEEEeccCCCchHHHHHhhhcCC
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
|.|+|||.+|||||||+|.|.|..
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCcc
Confidence 459999999999999999999974
No 375
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=92.91 E-value=0.075 Score=62.47 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=20.1
Q ss_pred CeEEEeccCCCchHHHHHhhhc
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVG 29 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g 29 (1036)
-.|++||.+|+|||||+++|++
T Consensus 34 ~ki~iiG~~~~GKSTLi~~Ll~ 55 (483)
T 3p26_A 34 LSFVVLGHVDAGKSTLMGRLLY 55 (483)
T ss_dssp EEEEEESCGGGTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999964
No 376
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=92.87 E-value=0.053 Score=63.15 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=20.5
Q ss_pred eEEEeccCCCchHHHHHhhhcC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGK 30 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~ 30 (1036)
.|+|||+|++|||+|+|.|+|.
T Consensus 69 vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 69 AVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 5889999999999999999984
No 377
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=92.86 E-value=0.045 Score=60.40 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=21.2
Q ss_pred CeEEEeccCCCchHHHHHhhhcC
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVGK 30 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g~ 30 (1036)
..|++||.+|||||||+++++|.
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999999885
No 378
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=92.82 E-value=0.15 Score=56.49 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.4
Q ss_pred ceEEeCcCCCChhhHHhhhcCCC
Q psy5059 85 QIVVVGTQSSGKSSVIESLVGKS 107 (1036)
Q Consensus 85 qIvVvG~QSsGKSSlLEal~G~~ 107 (1036)
-|+++|.++||||+++-.|+|.-
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHHHH
Confidence 37799999999999999999863
No 379
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=92.81 E-value=0.039 Score=64.89 Aligned_cols=23 Identities=30% Similarity=0.715 Sum_probs=19.3
Q ss_pred eEEEeccCCCchHHHHHhhhcCC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
.|++||.+|||||||+|+|+|.+
T Consensus 235 kV~ivG~~nvGKSSLln~L~~~~ 257 (476)
T 3gee_A 235 STVIAGKPNAGKSTLLNTLLGQE 257 (476)
T ss_dssp EEEEECCTTSSHHHHHHHCC---
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 59999999999999999999864
No 380
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=91.88 E-value=0.021 Score=58.25 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=22.4
Q ss_pred CeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
..|+|||.+|||||||++++++..|
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~~~~ 55 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTTNAF 55 (204)
Confidence 4799999999999999999987664
No 381
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.63 E-value=0.043 Score=59.64 Aligned_cols=23 Identities=35% Similarity=0.614 Sum_probs=21.5
Q ss_pred eEEEeccCCCchHHHHHhhhcCC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
.|++||..|+|||||+|.|.|..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999965
No 382
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=92.48 E-value=0.031 Score=57.79 Aligned_cols=26 Identities=23% Similarity=0.474 Sum_probs=21.8
Q ss_pred CCeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
...|+|||.+|||||||++++++..|
T Consensus 15 ~~ki~v~G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 15 QFKLVLVGDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp EEEEEEEECTTSSHHHHHTTBHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCC
Confidence 35899999999999999999765443
No 383
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=92.48 E-value=0.059 Score=57.66 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=22.4
Q ss_pred CCCeEEEeccC---------CCchHHHHHhhhcC
Q psy5059 6 QLPQIVVVGTQ---------SSGKSSVIESLVGK 30 (1036)
Q Consensus 6 ~lp~i~vvg~~---------~~gkss~~~~~~g~ 30 (1036)
..-.|+|||.+ |||||||++++++.
T Consensus 18 ~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~ 51 (255)
T 3c5h_A 18 GTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP 51 (255)
T ss_dssp SCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred ceeEEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence 34589999999 99999999999994
No 384
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.45 E-value=0.78 Score=50.32 Aligned_cols=170 Identities=16% Similarity=0.147 Sum_probs=0.0
Q ss_pred eEEeCcCCCChhhHHhhhcCCCcCcccccccccCceEEEEeeCCCCchhhhhhccCCCCccccccccccccccccchhhh
Q psy5059 86 IVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDREKRTAAAGTMDLDAWGQFLHTKDKVFRDFDDI 165 (1036)
Q Consensus 86 IvVvG~QSsGKSSlLEal~G~~flPrg~G~cTR~Pl~l~l~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~df~~~ 165 (1036)
|+++|.++||||+++..|++. +....| +..+.+..............
T Consensus 108 i~lvG~~GsGKTTl~~~LA~~--l~~~~G---~~V~lv~~D~~r~~a~eqL~---------------------------- 154 (296)
T 2px0_A 108 IVLFGSTGAGKTTTLAKLAAI--SMLEKH---KKIAFITTDTYRIAAVEQLK---------------------------- 154 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHH--HHHTTC---CCEEEEECCCSSTTHHHHHH----------------------------
T ss_pred EEEECCCCCCHHHHHHHHHHH--HHHhcC---CEEEEEecCcccchHHHHHH----------------------------
Q ss_pred hhhhhHHHHHhhccCCCcccccccccccccccCCcccCChhHHHHHHHHHHHHhcCCCCCcCCCcEEEEEeecCccccee
Q psy5059 166 RREIEDETERLAGKNKGICTMDLDAWGQFLHTKDKVFRDFDDIRREIEDETERLAGKNKGICSEPIILKIYSTSVLNLTL 245 (1036)
Q Consensus 166 r~ei~~e~~r~~~~~~~i~~~~~~~~~~f~~~~~~~~~~~~~I~~~I~~~~~~~~g~~~~~S~d~I~L~I~~P~~~~Ltl 245 (1036)
.|+.....+.....+..++...+... .-+++.|
T Consensus 155 ------------------------~~~~~~gl~~~~~~~~~~l~~al~~~-----------------------~~~dlvI 187 (296)
T 2px0_A 155 ------------------------TYAELLQAPLEVCYTKEEFQQAKELF-----------------------SEYDHVF 187 (296)
T ss_dssp ------------------------HHHTTTTCCCCBCSSHHHHHHHHHHG-----------------------GGSSEEE
T ss_pred ------------------------HHHHhcCCCeEecCCHHHHHHHHHHh-----------------------cCCCEEE
Q ss_pred ecCCCccccCCCCCchhHHHHHHHHHHHhhcCCCcEEEEEeccccccccchhhhhhhhcCCCCCcccceeccCCCCcccc
Q psy5059 246 VDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKETDVDGRRTLDLLDIDLPGITKV 325 (1036)
Q Consensus 246 VDLPGi~~~~~~~q~~di~~~ir~lv~~yI~~~n~IIL~V~~An~D~~~s~al~l~r~~Dp~g~RTigvl~~~~~g~~~~ 325 (1036)
+|+||.
T Consensus 188 iDT~G~-------------------------------------------------------------------------- 193 (296)
T 2px0_A 188 VDTAGR-------------------------------------------------------------------------- 193 (296)
T ss_dssp EECCCC--------------------------------------------------------------------------
T ss_pred EeCCCC--------------------------------------------------------------------------
Q ss_pred cCCCCCchHHHHHHHHHHhhhcCCCceEEEEEecCccccchHHHHHhhhccccCCceEEEEecccccCCCchhhhhhcCc
Q psy5059 326 PVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKETDVDGRRTLAVVTKIDLMDAGTDAIDILCGR 405 (1036)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~v~~~~d~~~~~~~~la~~~d~~g~rti~VitK~Dl~~~g~~~~~~l~~~ 405 (1036)
+..-...+.+|.+-.-.....-.++|++++.+. .+..++++.+. .-..+-.|+||+|...++..+..++.--
T Consensus 194 -----~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~--~~~~~~~~~~~-~l~~~giVltk~D~~~~~g~~~~~~~~~ 265 (296)
T 2px0_A 194 -----NFKDPQYIDELKETIPFESSIQSFLVLSATAKY--EDMKHIVKRFS-SVPVNQYIFTKIDETTSLGSVFNILAES 265 (296)
T ss_dssp -----CTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCH--HHHHHHTTTTS-SSCCCEEEEECTTTCSCCHHHHHHHHTC
T ss_pred -----ChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCH--HHHHHHHHHHh-cCCCCEEEEeCCCcccchhHHHHHHHHH
Q ss_pred cccccccccccc
Q psy5059 406 VIPVKLDVDGRR 417 (1036)
Q Consensus 406 ~~~~~~~~~~~~ 417 (1036)
-+|++.=-+|.+
T Consensus 266 ~~pi~~i~~ge~ 277 (296)
T 2px0_A 266 KIGVGFMTNGQN 277 (296)
T ss_dssp SCCCSEECCSSC
T ss_pred CcCEEEEECCCC
No 385
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=92.38 E-value=0.047 Score=63.98 Aligned_cols=23 Identities=26% Similarity=0.523 Sum_probs=21.3
Q ss_pred eEEEeccCCCchHHHHHhhhcCC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
.|++||.+|||||||+|+|+|.+
T Consensus 226 kV~ivG~~nvGKSSLln~L~~~~ 248 (462)
T 3geh_A 226 KVAIVGRPNVGKSSLLNAWSQSD 248 (462)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 59999999999999999999855
No 386
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=92.17 E-value=0.22 Score=56.39 Aligned_cols=98 Identities=11% Similarity=0.082 Sum_probs=60.8
Q ss_pred HHHHHHHhhhcCCCceEEEEEecCccccchHHHHHhhhccccCCceEEEEecccccCCCchhhhhhcCcccccccccccc
Q psy5059 337 QIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKETDVDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKLDVDGR 416 (1036)
Q Consensus 337 ~~~~~~~~y~~~~~~~~~~~v~~~~d~~~~~~~~la~~~d~~g~rti~VitK~Dl~~~g~~~~~~l~~~~~~~~~~~~~~ 416 (1036)
.+..+++.|.. ..++++.|||++. ++.+-...|.+.+ .+.+.|.|+||.||.++....
T Consensus 58 ~f~~~l~~i~~-~~~~il~VvD~~d-~~~~~~~~l~~~~--~~~p~ilV~NK~DL~~~~~~~------------------ 115 (368)
T 3h2y_A 58 DFLRILNGIGK-SDALVVKIVDIFD-FNGSWLPGLHRFV--GNNKVLLVGNKADLIPKSVKH------------------ 115 (368)
T ss_dssp HHHHHHHHHHH-SCCEEEEEEETTS-HHHHCCTTHHHHS--SSSCEEEEEECGGGSCTTSCH------------------
T ss_pred HHHHHHHHHhc-cCcEEEEEEECCC-CcccHHHHHHHHh--CCCcEEEEEEChhcCCcccCH------------------
Confidence 45566666653 4458899999874 4332222233332 378999999999998754321
Q ss_pred cchHHHHHHHHHHhhccC--CCcceeeeecccchhhhHHHHHHhhhc
Q psy5059 417 RTYIEAQIKQLVLHYISN--PNSIILAVVTANTDMATSESLKLAKET 461 (1036)
Q Consensus 417 ~~~~~~~l~~~v~~~i~~--~~~ipla~ISA~td~~~qeil~la~~v 461 (1036)
+.+.+.+..+.+. ..+.....+||+++.++.++++...+.
T Consensus 116 -----~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 116 -----DKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp -----HHHHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence 1222223322222 223467789999999999999887654
No 387
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=92.07 E-value=0.062 Score=63.10 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=22.6
Q ss_pred CeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
..|++||.+||||||||++|+|..+
T Consensus 323 ~ki~lvG~~nvGKSsLl~~l~~~~~ 347 (497)
T 3lvq_E 323 MRILMLGLDAAGKTTILYKLKLGQS 347 (497)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred eeEEEEcCCCCCHHHHHHHHhcCCC
Confidence 4799999999999999999998663
No 388
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.95 E-value=0.058 Score=62.26 Aligned_cols=24 Identities=42% Similarity=0.580 Sum_probs=22.0
Q ss_pred CeEEEeccCCCchHHHHHhhhcCC
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
+.|++||++|||||||+|.|.|.-
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 479999999999999999999954
No 389
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=91.93 E-value=0.17 Score=58.49 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=21.3
Q ss_pred CCCeEEEeccCCCchHHHHHhhhc
Q psy5059 6 QLPQIVVVGTQSSGKSSVIESLVG 29 (1036)
Q Consensus 6 ~lp~i~vvg~~~~gkss~~~~~~g 29 (1036)
+...|+++|..++|||||+++|++
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~ 28 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLM 28 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHH
Confidence 345799999999999999999974
No 390
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=91.77 E-value=0.071 Score=59.43 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=22.1
Q ss_pred eEEEeccCCCchHHHHHhhhcCCc
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
.|+|||.+|||||||+++|++..|
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~~~~ 190 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKLGEI 190 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCSSCC
T ss_pred eEEEECCCCccHHHHHHHHhCCCC
Confidence 699999999999999999988664
No 391
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=91.65 E-value=0.66 Score=53.74 Aligned_cols=20 Identities=25% Similarity=0.493 Sum_probs=18.5
Q ss_pred ceEEeCcCCCChhhHHhhhc
Q psy5059 85 QIVVVGTQSSGKSSVIESLV 104 (1036)
Q Consensus 85 qIvVvG~QSsGKSSlLEal~ 104 (1036)
-|+++|.+++|||++...|+
T Consensus 102 vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57788999999999999998
No 392
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=91.63 E-value=0.068 Score=58.89 Aligned_cols=26 Identities=38% Similarity=0.622 Sum_probs=20.1
Q ss_pred eEEEeccCCCchHHHHHhhhcCCccc
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKSFLP 34 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~~~p 34 (1036)
.|+|||..|||||||+++|.|....|
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~~~~~ 45 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLTDLYP 45 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC-----
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccC
Confidence 57999999999999999999974434
No 393
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.58 E-value=0.078 Score=60.01 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=21.4
Q ss_pred eEEEeccCCCchHHHHHhhhcCC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
.+++||.+|||||||+|.|.|..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 58999999999999999999965
No 394
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.56 E-value=0.083 Score=53.61 Aligned_cols=24 Identities=17% Similarity=0.484 Sum_probs=22.6
Q ss_pred CCeEEEeccCCCchHHHHHhhhcC
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGK 30 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~ 30 (1036)
.|.|+++|..||||||+++.|++.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 689999999999999999999985
No 395
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=91.50 E-value=0.077 Score=63.10 Aligned_cols=28 Identities=29% Similarity=0.665 Sum_probs=22.3
Q ss_pred CCCCeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 5 IQLPQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 5 ~~lp~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
..-..|++||.+|||||||+++++|..|
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~ 66 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETF 66 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC---
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3445899999999999999999998765
No 396
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=91.36 E-value=0.072 Score=59.70 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.8
Q ss_pred CeEEEeccCCCchHHHHHhhhcCC
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
..|+++|.+|||||||++.|.|.-
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhh
Confidence 479999999999999999999853
No 397
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.31 E-value=0.08 Score=54.39 Aligned_cols=22 Identities=27% Similarity=0.594 Sum_probs=20.6
Q ss_pred eEEEeccCCCchHHHHHhhhcC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGK 30 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~ 30 (1036)
.|++||..|||||||++.|.|.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999994
No 398
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=91.28 E-value=0.082 Score=53.29 Aligned_cols=23 Identities=22% Similarity=0.559 Sum_probs=21.2
Q ss_pred CeEEEeccCCCchHHHHHhhhcC
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVGK 30 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g~ 30 (1036)
-.|+++|..|||||||++.|.|.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999995
No 399
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=91.25 E-value=0.085 Score=53.07 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=20.8
Q ss_pred eEEEeccCCCchHHHHHhhhcC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGK 30 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~ 30 (1036)
.|+++|.+|||||||++.|.|.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999997
No 400
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=91.12 E-value=0.082 Score=54.51 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=21.0
Q ss_pred eEEEeccCCCchHHHHHhhhcCC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
.|+|+|.+|||||||++.|.|.-
T Consensus 24 ~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 24 LVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999953
No 401
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=91.10 E-value=0.087 Score=53.46 Aligned_cols=23 Identities=22% Similarity=0.615 Sum_probs=20.8
Q ss_pred eEEEeccCCCchHHHHHhhhcCC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
.++++|.+|||||||++.|.|.-
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999999943
No 402
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=91.06 E-value=0.092 Score=60.15 Aligned_cols=40 Identities=20% Similarity=0.240 Sum_probs=30.9
Q ss_pred CceEEeCcCCCChhhHHhhhcCCCc-CcccccccccCceEE
Q psy5059 84 PQIVVVGTQSSGKSSVIESLVGKSF-LPRGIGIVTRRPLIL 123 (1036)
Q Consensus 84 PqIvVvG~QSsGKSSlLEal~G~~f-lPrg~G~cTR~Pl~l 123 (1036)
..+.++|.+|+|||||+++|+|..+ .....-.||+.|..=
T Consensus 21 ~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G 61 (392)
T 1ni3_A 21 LKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEA 61 (392)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceee
Confidence 5899999999999999999999775 233334567777643
No 403
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=91.02 E-value=0.048 Score=60.47 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.4
Q ss_pred eEEEeccCCCchHHHHHhhhcCC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
.++++|.+|||||||+|.|.|..
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHhcccc
Confidence 68999999999999999999954
No 404
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=90.97 E-value=0.29 Score=57.56 Aligned_cols=27 Identities=15% Similarity=0.251 Sum_probs=24.0
Q ss_pred CCCCeEEEeccCCCchHHHHHhhhcCC
Q psy5059 5 IQLPQIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 5 ~~lp~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
+.-+.|+++|..++|||||+++|.|.+
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~ 43 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIA 43 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCC
Confidence 445689999999999999999999966
No 405
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=90.88 E-value=0.093 Score=53.32 Aligned_cols=22 Identities=23% Similarity=0.496 Sum_probs=20.7
Q ss_pred eEEEeccCCCchHHHHHhhhcC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGK 30 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~ 30 (1036)
.|+++|..|||||||++.|.|.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999996
No 406
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=90.81 E-value=0.13 Score=59.27 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=22.5
Q ss_pred CCeEEEeccCCCchHHHHHhhhcCC
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
.+.|++||.+||||||||++|.|..
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCC
Confidence 3679999999999999999999964
No 407
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=90.71 E-value=0.12 Score=56.49 Aligned_cols=27 Identities=33% Similarity=0.479 Sum_probs=24.1
Q ss_pred CCeEEEeccCCCchHHHHHhhhcCCcc
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGKSFL 33 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~~~~ 33 (1036)
...|+++|.+|||||||++++++..|.
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~~~~ 181 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTNAFP 181 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCCC
T ss_pred eeEEEEECCCCCChHHHHHHHHhCCCC
Confidence 368999999999999999999987764
No 408
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=90.69 E-value=0.099 Score=53.85 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=21.0
Q ss_pred eEEEeccCCCchHHHHHhhhcCC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
.+++||..|||||||++.|.|..
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58899999999999999999953
No 409
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=90.53 E-value=0.11 Score=58.79 Aligned_cols=25 Identities=36% Similarity=0.546 Sum_probs=21.7
Q ss_pred eEEEeccCCCchHHHHHhhhcCCcc
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKSFL 33 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~~~ 33 (1036)
.|+|||.+|||||||+++|.|....
T Consensus 39 ~I~vvG~~g~GKSTLln~L~~~~~~ 63 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSLFLTDLY 63 (361)
T ss_dssp CEEECCCTTSCHHHHHHHHTTCCC-
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCCC
Confidence 5899999999999999999886543
No 410
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=90.48 E-value=0.074 Score=63.38 Aligned_cols=28 Identities=18% Similarity=0.447 Sum_probs=24.9
Q ss_pred CCeEEEeccCCCchHHHHHhhhcCCccc
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGKSFLP 34 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~~~~p 34 (1036)
-|.|+++|.+|+|||||+++|.|..+..
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~ 31 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAA 31 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCccc
Confidence 4899999999999999999999976544
No 411
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=90.30 E-value=0.14 Score=56.41 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=21.3
Q ss_pred eEEEeccCCCchHHHHHhhhcCC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
.++++|.+|||||||+|.|.|..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 68999999999999999999965
No 412
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.11 E-value=0.08 Score=53.56 Aligned_cols=29 Identities=31% Similarity=0.455 Sum_probs=23.7
Q ss_pred CCeEEEeccCCCchHHHHHhhhcCCccccc
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGKSFLPRG 36 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~~~~pr~ 36 (1036)
.+.|+|||..|||||||++.|+|.- -|+|
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~~-~~~g 30 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPIL-RERG 30 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHHH-HHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh-hhcC
Confidence 3689999999999999999999953 2443
No 413
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.03 E-value=0.42 Score=54.04 Aligned_cols=175 Identities=19% Similarity=0.209 Sum_probs=0.0
Q ss_pred eEEeCcCCCChhhHHhhhcCCCcCcccccccccCceEEEEeeCCCCchhhhhhccCCCCccccccccccccccccchhhh
Q psy5059 86 IVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDREKRTAAAGTMDLDAWGQFLHTKDKVFRDFDDI 165 (1036)
Q Consensus 86 IvVvG~QSsGKSSlLEal~G~~flPrg~G~cTR~Pl~l~l~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~df~~~ 165 (1036)
|+++|.++||||+++..|+|.- .+..+++.-.-.++
T Consensus 160 i~lvG~nGsGKTTll~~Lag~l--------------------------------------------~~~~G~V~l~g~D~ 195 (359)
T 2og2_A 160 IMIVGVNGGGKTTSLGKLAHRL--------------------------------------------KNEGTKVLMAAGDT 195 (359)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH--------------------------------------------HHTTCCEEEECCCC
T ss_pred EEEEcCCCChHHHHHHHHHhhc--------------------------------------------cccCCEEEEecccc
Q ss_pred hhhhhHHHHHhhccCCCcccccccccccccccCCcc-cCChhHHHHHHHHHHHHhcCCCCCcCCCcEEEEEeecCcccce
Q psy5059 166 RREIEDETERLAGKNKGICTMDLDAWGQFLHTKDKV-FRDFDDIRREIEDETERLAGKNKGICSEPIILKIYSTSVLNLT 244 (1036)
Q Consensus 166 r~ei~~e~~r~~~~~~~i~~~~~~~~~~f~~~~~~~-~~~~~~I~~~I~~~~~~~~g~~~~~S~d~I~L~I~~P~~~~Lt 244 (1036)
.+.-..+.-+..+...++. ....... ......+.+.+..... ...+..
T Consensus 196 ~r~~a~eql~~~~~r~~i~----------~v~q~~~~~~p~~tv~e~l~~~~~---------------------~~~d~~ 244 (359)
T 2og2_A 196 FRAAASDQLEIWAERTGCE----------IVVAEGDKAKAATVLSKAVKRGKE---------------------EGYDVV 244 (359)
T ss_dssp SCHHHHHHHHHHHHHHTCE----------EECCSSSSCCHHHHHHHHHHHHHH---------------------TTCSEE
T ss_pred cccchhHHHHHHHHhcCeE----------EEEecccccChhhhHHHHHHHHHh---------------------CCCHHH
Q ss_pred eecCCCccccCCCCCchhHHHHHHHHHHHhhcCCCcEEEEEeccccccccchhhhhhhhcCCCCCcccceeccCCCCccc
Q psy5059 245 LVDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKETDVDGRRTLDLLDIDLPGITK 324 (1036)
Q Consensus 245 lVDLPGi~~~~~~~q~~di~~~ir~lv~~yI~~~n~IIL~V~~An~D~~~s~al~l~r~~Dp~g~RTigvl~~~~~g~~~ 324 (1036)
++|+.|+... ....+.++..+-..+.+..+.+|.-++|+++ +++......
T Consensus 245 lldt~Gl~~~-~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-pttglD~~~---------------------------- 294 (359)
T 2og2_A 245 LCDTSGRLHT-NYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLP---------------------------- 294 (359)
T ss_dssp EEECCCCSSC-CHHHHHHHHHHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHH----------------------------
T ss_pred HHHhcCCChh-hhhHHHHHHHHHHHHHHHHhcCCCceEEEEc-CCCCCCHHH----------------------------
Q ss_pred ccCCCCCchHHHHHHHHHHhhhcCCCceEEEEEecCccccchHHHHHhhhccccCCceEEEEecccccCCCchhhhhhcC
Q psy5059 325 VPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKETDVDGRRTLAVVTKIDLMDAGTDAIDILCG 404 (1036)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~v~~~~d~~~~~~~~la~~~d~~g~rti~VitK~Dl~~~g~~~~~~l~~ 404 (1036)
.++.......-|+.++||.|-..+|..++.++.-
T Consensus 295 ----------------------------------------------~~~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~ 328 (359)
T 2og2_A 295 ----------------------------------------------QAREFNEVVGITGLILTKLDGSARGGCVVSVVEE 328 (359)
T ss_dssp ----------------------------------------------HHHHHHHHTCCCEEEEESCTTCSCTHHHHHHHHH
T ss_pred ----------------------------------------------HHHHHHHhcCCeEEEEecCcccccccHHHHHHHH
Q ss_pred ccccccc
Q psy5059 405 RVIPVKL 411 (1036)
Q Consensus 405 ~~~~~~~ 411 (1036)
--.|++.
T Consensus 329 ~~~pI~~ 335 (359)
T 2og2_A 329 LGIPVKF 335 (359)
T ss_dssp HCCCEEE
T ss_pred hCCCEEE
No 414
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=89.96 E-value=0.16 Score=52.37 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=21.1
Q ss_pred eEEEeccCCCchHHHHHhhhcCC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
.|+++|.+|||||||++.|.+..
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHST
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 58999999999999999999863
No 415
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=89.92 E-value=0.12 Score=54.17 Aligned_cols=23 Identities=30% Similarity=0.483 Sum_probs=21.2
Q ss_pred eEEEeccCCCchHHHHHhhhcCC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
.++++|..|||||||++.|.|..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68999999999999999999954
No 416
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=89.83 E-value=0.13 Score=50.74 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.8
Q ss_pred CeEEEeccCCCchHHHHHhhhcC
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVGK 30 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g~ 30 (1036)
..|+++|.+|||||||.+.|.|.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999874
No 417
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=89.77 E-value=0.13 Score=51.97 Aligned_cols=23 Identities=30% Similarity=0.601 Sum_probs=20.9
Q ss_pred eEEEeccCCCchHHHHHhhhcCC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
.|+++|..|||||||++.|.|..
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999999954
No 418
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=89.71 E-value=0.13 Score=53.60 Aligned_cols=23 Identities=26% Similarity=0.563 Sum_probs=21.1
Q ss_pred eEEEeccCCCchHHHHHhhhcCC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
.+++||..|||||||++.|.|..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999999954
No 419
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=89.69 E-value=0.13 Score=52.82 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=20.4
Q ss_pred eEEEeccCCCchHHHHHhhhcC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGK 30 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~ 30 (1036)
.|+++|..|||||||++.|.|.
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999984
No 420
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=89.67 E-value=0.16 Score=52.28 Aligned_cols=31 Identities=29% Similarity=0.272 Sum_probs=25.6
Q ss_pred eEEEeccCCCchHHHHHhhhcCCcccccCCc
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKSFLPRGIGI 39 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~~~pr~~~~ 39 (1036)
.++++|.+||||||++..|.|.-..|.+.|.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~ 57 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGG 57 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccCC
Confidence 5789999999999999999995545666554
No 421
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=89.65 E-value=0.15 Score=54.15 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=21.2
Q ss_pred eEEEeccCCCchHHHHHhhhcCC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
.+++||..|||||||++.|.|..
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 58999999999999999999954
No 422
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=89.52 E-value=0.3 Score=55.25 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=21.6
Q ss_pred ceEEeCcCCCChhhHHhhhcCCC
Q psy5059 85 QIVVVGTQSSGKSSVIESLVGKS 107 (1036)
Q Consensus 85 qIvVvG~QSsGKSSlLEal~G~~ 107 (1036)
.++++|..+||||||+++|+|..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 58999999999999999999975
No 423
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=89.40 E-value=0.13 Score=57.78 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=21.9
Q ss_pred CCeEEEeccCCCchHHHHHhhhcC
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGK 30 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~ 30 (1036)
.+.|+++|.+||||||++++|.+.
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 424
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=89.37 E-value=0.15 Score=51.81 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=21.2
Q ss_pred eEEEeccCCCchHHHHHhhhcCC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
.|+++|.+||||||+++.|.|.-
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 68999999999999999999864
No 425
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=89.36 E-value=0.15 Score=53.66 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=21.1
Q ss_pred eEEEeccCCCchHHHHHhhhcCC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
.++++|..|||||||++.|.|..
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999964
No 426
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=89.35 E-value=0.16 Score=53.94 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=21.3
Q ss_pred eEEEeccCCCchHHHHHhhhcCC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
.+++||..|||||||++.|.|.-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999964
No 427
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=89.16 E-value=0.17 Score=53.92 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=21.2
Q ss_pred eEEEeccCCCchHHHHHhhhcCC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
.++++|..|||||||++.|.|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999964
No 428
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=89.12 E-value=0.14 Score=57.44 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=22.7
Q ss_pred CCCeEEEeccCCCchHHHHHhhhcCC
Q psy5059 6 QLPQIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 6 ~lp~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
.-+.|+++|.+|+||||++++|.|.-
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999853
No 429
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=89.07 E-value=0.17 Score=52.94 Aligned_cols=23 Identities=13% Similarity=0.293 Sum_probs=21.1
Q ss_pred eEEEeccCCCchHHHHHhhhcCC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
.++++|..|||||||++.|.|.-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999964
No 430
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=88.97 E-value=0.16 Score=52.56 Aligned_cols=25 Identities=20% Similarity=0.482 Sum_probs=21.9
Q ss_pred CCCeEEEeccCCCchHHHHHhhhcC
Q psy5059 6 QLPQIVVVGTQSSGKSSVIESLVGK 30 (1036)
Q Consensus 6 ~lp~i~vvg~~~~gkss~~~~~~g~ 30 (1036)
.=..||++|..|||||||++.|.+.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3347899999999999999999985
No 431
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=88.94 E-value=0.2 Score=48.91 Aligned_cols=20 Identities=35% Similarity=0.498 Sum_probs=18.8
Q ss_pred CeEEEeccCCCchHHHHHhh
Q psy5059 8 PQIVVVGTQSSGKSSVIESL 27 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~ 27 (1036)
+.|+++|.+||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 57999999999999999998
No 432
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=88.90 E-value=0.18 Score=50.35 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=18.6
Q ss_pred eEEEeccCCCchHHHHHhhhc
Q psy5059 9 QIVVVGTQSSGKSSVIESLVG 29 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g 29 (1036)
.+++||.+||||||+++.+.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHcc
Confidence 588999999999999998653
No 433
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=88.83 E-value=0.18 Score=53.68 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=21.3
Q ss_pred eEEEeccCCCchHHHHHhhhcCC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
.++++|..|||||||++.|.|..
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999964
No 434
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=88.81 E-value=0.18 Score=56.97 Aligned_cols=29 Identities=31% Similarity=0.533 Sum_probs=24.0
Q ss_pred eEEEeccCCCchHHHHHhhhcCCcccccCCc
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKSFLPRGIGI 39 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~~~pr~~~~ 39 (1036)
.|+|+|..||||||+++.|.|.- |...|.
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~--~~~~g~ 205 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEI--PFDQRL 205 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTS--CTTSCE
T ss_pred EEEEECCCCCCHHHHHHHHHhcC--CCCceE
Confidence 68999999999999999999943 444554
No 435
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=88.80 E-value=0.18 Score=53.12 Aligned_cols=23 Identities=26% Similarity=0.569 Sum_probs=21.2
Q ss_pred eEEEeccCCCchHHHHHhhhcCC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
.++++|..|||||||++.|.|.-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999964
No 436
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=88.79 E-value=0.17 Score=51.67 Aligned_cols=22 Identities=27% Similarity=0.625 Sum_probs=20.2
Q ss_pred eEEEeccCCCchHHHHHhhhcC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGK 30 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~ 30 (1036)
.|+++|.+|||||||++.|.|.
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6999999999999999999874
No 437
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=88.76 E-value=0.2 Score=50.67 Aligned_cols=24 Identities=33% Similarity=0.500 Sum_probs=21.8
Q ss_pred CCCeEEEeccCCCchHHHHHhhhc
Q psy5059 6 QLPQIVVVGTQSSGKSSVIESLVG 29 (1036)
Q Consensus 6 ~lp~i~vvg~~~~gkss~~~~~~g 29 (1036)
..|.|+++|.+|||||||++.|++
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 368899999999999999999987
No 438
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=88.63 E-value=0.18 Score=55.87 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=21.3
Q ss_pred eEEEeccCCCchHHHHHhhhcCC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
.|+|||..|||||||++.|.|.-
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhhc
Confidence 68999999999999999999954
No 439
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=88.60 E-value=0.19 Score=53.68 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=21.2
Q ss_pred eEEEeccCCCchHHHHHhhhcCC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
.+++||..|||||||++.|.|.-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999964
No 440
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.52 E-value=0.2 Score=53.30 Aligned_cols=23 Identities=17% Similarity=0.563 Sum_probs=21.2
Q ss_pred eEEEeccCCCchHHHHHhhhcCC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
.++++|..|||||||++.|.|..
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999964
No 441
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=88.48 E-value=0.2 Score=53.73 Aligned_cols=23 Identities=26% Similarity=0.587 Sum_probs=21.2
Q ss_pred eEEEeccCCCchHHHHHhhhcCC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
.++++|..|||||||++.|.|..
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999999964
No 442
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=88.46 E-value=0.2 Score=53.84 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=21.2
Q ss_pred eEEEeccCCCchHHHHHhhhcCC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
.++++|..|||||||++.|.|.-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999964
No 443
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=88.45 E-value=0.2 Score=54.07 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=21.1
Q ss_pred eEEEeccCCCchHHHHHhhhcCC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
.++++|..|||||||++.|.|..
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999964
No 444
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=88.42 E-value=0.2 Score=54.22 Aligned_cols=23 Identities=26% Similarity=0.582 Sum_probs=21.1
Q ss_pred eEEEeccCCCchHHHHHhhhcCC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
.+++||..|||||||++.|.|..
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57899999999999999999964
No 445
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=88.42 E-value=0.2 Score=52.89 Aligned_cols=25 Identities=28% Similarity=0.518 Sum_probs=22.3
Q ss_pred CeEEEeccCCCchHHHHHhhh---cCCc
Q psy5059 8 PQIVVVGTQSSGKSSVIESLV---GKSF 32 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~---g~~~ 32 (1036)
..|+++|.+||||||+++.|. |...
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~ 55 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQH 55 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 379999999999999999999 8653
No 446
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=88.40 E-value=0.16 Score=61.37 Aligned_cols=27 Identities=22% Similarity=0.570 Sum_probs=24.2
Q ss_pred CCCeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 6 QLPQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 6 ~lp~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
.-|.|+|+|.+++|||||+|+|.|..+
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v 30 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAV 30 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccC
Confidence 468999999999999999999998544
No 447
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=88.29 E-value=0.23 Score=56.85 Aligned_cols=27 Identities=26% Similarity=0.381 Sum_probs=23.9
Q ss_pred CCCeEEEeccCCCchHHHHHhhhcCCc
Q psy5059 6 QLPQIVVVGTQSSGKSSVIESLVGKSF 32 (1036)
Q Consensus 6 ~lp~i~vvg~~~~gkss~~~~~~g~~~ 32 (1036)
+-..|+++|.+|+|||||+|+|+|...
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~~~ 33 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGIWT 33 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccc
Confidence 446899999999999999999999763
No 448
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=88.24 E-value=0.21 Score=54.42 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=21.1
Q ss_pred eEEEeccCCCchHHHHHhhhcCC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
.+++||..|||||||++.|.|.-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57999999999999999999954
No 449
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=88.22 E-value=0.23 Score=48.61 Aligned_cols=22 Identities=27% Similarity=0.298 Sum_probs=19.9
Q ss_pred CeEEEeccCCCchHHHHHhhhc
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVG 29 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g 29 (1036)
..|+++|.+||||||+.+.|..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 450
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=88.08 E-value=0.22 Score=53.58 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=21.4
Q ss_pred eEEEeccCCCchHHHHHhhhcCC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
.+++||..|||||||++.|.|..
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58999999999999999999965
No 451
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=88.08 E-value=0.21 Score=50.32 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=19.5
Q ss_pred eEEEeccCCCchHHHHHhhhc
Q psy5059 9 QIVVVGTQSSGKSSVIESLVG 29 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g 29 (1036)
.|+++|.+||||||+++.|.|
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999987
No 452
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=88.08 E-value=0.21 Score=49.55 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=20.5
Q ss_pred CeEEEeccCCCchHHHHHhhhcC
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVGK 30 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g~ 30 (1036)
..|+++|.+||||||+.+.|.|.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 36899999999999999999764
No 453
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=88.07 E-value=0.22 Score=53.89 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=21.2
Q ss_pred eEEEeccCCCchHHHHHhhhcCC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
.++++|..|||||||++.|.|.-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 58899999999999999999964
No 454
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=88.07 E-value=0.22 Score=53.28 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=23.8
Q ss_pred eEEEeccCCCchHHHHHhhhcCCcccccCC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKSFLPRGIG 38 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~~~pr~~~ 38 (1036)
.++++|..|||||||++.|.|...++-.+|
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G 60 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGDPEYTVERG 60 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCTTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCce
Confidence 578999999999999999999732333344
No 455
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=88.05 E-value=0.22 Score=51.46 Aligned_cols=23 Identities=22% Similarity=0.510 Sum_probs=20.8
Q ss_pred CeEEEeccCCCchHHHHHhhhcC
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVGK 30 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g~ 30 (1036)
+.|+++|.+|||||||.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999874
No 456
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=88.03 E-value=0.22 Score=53.52 Aligned_cols=30 Identities=27% Similarity=0.470 Sum_probs=24.1
Q ss_pred eEEEeccCCCchHHHHHhhhcCCcccccCCcc
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKSFLPRGIGIV 40 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~~~pr~~~~~ 40 (1036)
.++++|..|||||||++.|.|.. |-.+|.+
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~--~p~~G~I 62 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH--RPIQGKI 62 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS--CCSEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCcEE
Confidence 57899999999999999999964 3334544
No 457
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=88.02 E-value=0.22 Score=54.03 Aligned_cols=23 Identities=35% Similarity=0.380 Sum_probs=21.2
Q ss_pred eEEEeccCCCchHHHHHhhhcCC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
.+++||..|||||||++.|.|.-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999964
No 458
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.99 E-value=0.22 Score=53.58 Aligned_cols=23 Identities=13% Similarity=0.300 Sum_probs=21.2
Q ss_pred eEEEeccCCCchHHHHHhhhcCC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
.++++|..|||||||++.|.|..
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999964
No 459
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=87.99 E-value=0.13 Score=59.40 Aligned_cols=28 Identities=39% Similarity=0.530 Sum_probs=21.8
Q ss_pred CCeEEEeccCCCchHHHHHhhhcCCccc
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGKSFLP 34 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~~~~p 34 (1036)
.+.|+|||..|+|||||+|+|+|.++.+
T Consensus 34 ~~kI~IvG~~~vGKSTLin~L~~~~~~~ 61 (423)
T 3qq5_A 34 RRYIVVAGRRNVGKSSFMNALVGQNVSI 61 (423)
T ss_dssp CEEEEEECSCSTTTTTTTTSSCC-----
T ss_pred CEEEEEECCCCCCHHHHHHHHHcCCCCc
Confidence 4689999999999999999999987643
No 460
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=87.88 E-value=0.19 Score=52.32 Aligned_cols=29 Identities=17% Similarity=0.131 Sum_probs=24.0
Q ss_pred eEEEeccCCCchHHHHHhhhcCCcccccCCcc
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKSFLPRGIGIV 40 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~~~pr~~~~~ 40 (1036)
.++++|..|||||||++.|.|. .|. +|.+
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl--~p~-~G~I 52 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ--ALQ-SKQV 52 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH--HHH-TTSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC--CCc-CCee
Confidence 4789999999999999999998 353 4544
No 461
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=87.84 E-value=0.21 Score=53.91 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=20.5
Q ss_pred eEEEeccCCCchHHHHHhhhcC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGK 30 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~ 30 (1036)
.|+|+|..||||||+++.|.|.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 5899999999999999999994
No 462
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=87.75 E-value=0.29 Score=53.82 Aligned_cols=20 Identities=30% Similarity=0.541 Sum_probs=19.1
Q ss_pred eEEEeccCCCchHHHHHhhh
Q psy5059 9 QIVVVGTQSSGKSSVIESLV 28 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~ 28 (1036)
.++++|.+|||||||+|.|.
T Consensus 167 i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57999999999999999999
No 463
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=87.72 E-value=0.23 Score=53.58 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=21.1
Q ss_pred eEEEeccCCCchHHHHHhhhcCC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
.++++|..|||||||++.|.|..
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999999964
No 464
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=87.70 E-value=0.24 Score=53.63 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=21.3
Q ss_pred eEEEeccCCCchHHHHHhhhcCC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
.++++|..|||||||++.|.|..
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999974
No 465
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=87.57 E-value=0.78 Score=50.38 Aligned_cols=84 Identities=13% Similarity=0.085 Sum_probs=51.2
Q ss_pred CceEEEEEecCcc-ccchHHHHHhhhccccCCceEEEEecccccCCCchhhhhhcCcccccccccccccchHHHHHHHHH
Q psy5059 350 NSIILAVVTANTD-MATSESLKLAKETDVDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKLDVDGRRTYIEAQIKQLV 428 (1036)
Q Consensus 350 ~~~~~~~v~~~~d-~~~~~~~~la~~~d~~g~rti~VitK~Dl~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~v 428 (1036)
-..++.|++++.- ......-+....+...+.+.|.|+||+||.++.. . ... ...
T Consensus 80 aD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~--v----------------------~~~-~~~ 134 (302)
T 2yv5_A 80 VDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEE--K----------------------KEL-ERW 134 (302)
T ss_dssp CCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHH--H----------------------HHH-HHH
T ss_pred cCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccc--c----------------------HHH-HHH
Confidence 3567888888752 2222222333344557899999999999986421 0 001 111
Q ss_pred HhhccCCCcceeeeecccchhhhHHHHHHhh
Q psy5059 429 LHYISNPNSIILAVVTANTDMATSESLKLAK 459 (1036)
Q Consensus 429 ~~~i~~~~~ipla~ISA~td~~~qeil~la~ 459 (1036)
..+.+... .+...+||+++.++.+++....
T Consensus 135 ~~~~~~~g-~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 135 ISIYRDAG-YDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp HHHHHHTT-CEEEECCTTTCTTHHHHHHHTT
T ss_pred HHHHHHCC-CeEEEEECCCCCCHHHHHhhcc
Confidence 22222222 3678899999999999998754
No 466
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=87.57 E-value=0.24 Score=58.67 Aligned_cols=30 Identities=27% Similarity=0.540 Sum_probs=24.6
Q ss_pred eEEEeccCCCchHHHHHhhhcCCcccccCCcc
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKSFLPRGIGIV 40 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~~~pr~~~~~ 40 (1036)
.|+|+|..||||||++++|.|. +|...|++
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~--i~~~~gii 291 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF--IPPDAKVV 291 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG--SCTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhh--CCCCCCEE
Confidence 3899999999999999999983 45556654
No 467
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=87.36 E-value=0.24 Score=54.93 Aligned_cols=22 Identities=32% Similarity=0.335 Sum_probs=20.4
Q ss_pred eEEEeccCCCchHHHHHhhhcC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGK 30 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~ 30 (1036)
.|+|+|.+|||||||++.|.|.
T Consensus 92 ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHhh
Confidence 5889999999999999999994
No 468
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=87.29 E-value=0.27 Score=53.63 Aligned_cols=23 Identities=17% Similarity=0.406 Sum_probs=21.1
Q ss_pred eEEEeccCCCchHHHHHhhhcCC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
.++++|..|||||||++.|.|.-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999999964
No 469
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=87.16 E-value=0.25 Score=50.65 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=21.0
Q ss_pred eEEEeccCCCchHHHHHhhhcCC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
.|+++|.+||||||+++.|.|.-
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 48999999999999999999953
No 470
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=86.91 E-value=0.28 Score=50.22 Aligned_cols=23 Identities=30% Similarity=0.686 Sum_probs=20.6
Q ss_pred CeEEEeccCCCchHHHHHhhhcC
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVGK 30 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g~ 30 (1036)
..|+++|.+||||||+.+.|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999764
No 471
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=86.88 E-value=0.28 Score=53.01 Aligned_cols=23 Identities=22% Similarity=0.663 Sum_probs=21.5
Q ss_pred eEEEeccCCCchHHHHHhhhcCC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
.++++|..|||||||++.|.|..
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999986
No 472
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=86.81 E-value=0.25 Score=50.27 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=20.0
Q ss_pred eEEEeccCCCchHHHHHhhhc
Q psy5059 9 QIVVVGTQSSGKSSVIESLVG 29 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g 29 (1036)
.|+|+|.+||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999988
No 473
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=86.77 E-value=0.25 Score=49.23 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=20.2
Q ss_pred eEEEeccCCCchHHHHHhhhcC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGK 30 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~ 30 (1036)
..+|||..||||||++++|.+.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 6799999999999999999873
No 474
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=86.54 E-value=0.25 Score=54.63 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=21.3
Q ss_pred eEEEeccCCCchHHHHHhhhcCC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
.+++||..|||||||++.|.|.-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCchHHHHHHHHHcCC
Confidence 58999999999999999999954
No 475
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=86.35 E-value=0.32 Score=47.97 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=19.3
Q ss_pred eEEEeccCCCchHHHHHhhhc
Q psy5059 9 QIVVVGTQSSGKSSVIESLVG 29 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g 29 (1036)
.|+++|.+||||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 589999999999999999975
No 476
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=86.30 E-value=0.3 Score=49.88 Aligned_cols=23 Identities=35% Similarity=0.310 Sum_probs=20.8
Q ss_pred eEEEeccCCCchHHHHHhhhcCC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
.|+++|.+|||||||.+.|.|.-
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998854
No 477
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=86.23 E-value=0.22 Score=51.96 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=15.2
Q ss_pred eEEEeccCCCchHHHHHhhh-cC
Q psy5059 9 QIVVVGTQSSGKSSVIESLV-GK 30 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~-g~ 30 (1036)
.|+++|..|||||||++.|. |.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 68999999999999999999 85
No 478
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=86.14 E-value=0.3 Score=52.04 Aligned_cols=26 Identities=31% Similarity=0.520 Sum_probs=22.9
Q ss_pred CeEEEeccCCCchHHHHHhhh---cCCcc
Q psy5059 8 PQIVVVGTQSSGKSSVIESLV---GKSFL 33 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~---g~~~~ 33 (1036)
..|+++|..|||||||++.|. |..+.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 479999999999999999999 86653
No 479
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=86.11 E-value=0.31 Score=54.41 Aligned_cols=29 Identities=31% Similarity=0.527 Sum_probs=23.8
Q ss_pred eEEEeccCCCchHHHHHhhhcCCcccccCCc
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKSFLPRGIGI 39 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~~~pr~~~~ 39 (1036)
.|+|+|..||||||+++.|.|.- |..+|.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~--~~~~g~ 201 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI--PKEERI 201 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS--CTTSCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--cCCCcE
Confidence 58999999999999999999953 334554
No 480
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=86.02 E-value=0.34 Score=49.38 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=19.9
Q ss_pred eEEEeccCCCchHHHHHhhhc
Q psy5059 9 QIVVVGTQSSGKSSVIESLVG 29 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g 29 (1036)
.|+++|.+||||||+.+.|.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 481
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=85.93 E-value=0.33 Score=49.39 Aligned_cols=23 Identities=48% Similarity=0.579 Sum_probs=20.5
Q ss_pred CeEEEeccCCCchHHHHHhhhcC
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVGK 30 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g~ 30 (1036)
..|+++|.+|||||||.+.|.+.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999764
No 482
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=85.88 E-value=0.27 Score=58.53 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=21.9
Q ss_pred CCeEEEeccCCCchHHHHHhhhcC
Q psy5059 7 LPQIVVVGTQSSGKSSVIESLVGK 30 (1036)
Q Consensus 7 lp~i~vvg~~~~gkss~~~~~~g~ 30 (1036)
.+.|++||.+|||||||+|+|++.
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~ 36 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLF 36 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHhh
Confidence 578999999999999999999863
No 483
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=85.84 E-value=0.28 Score=56.88 Aligned_cols=123 Identities=18% Similarity=0.107 Sum_probs=68.9
Q ss_pred eeccCCCCcccccCCCCCchHHHHHHHHHHhhhc-CCCceEEEEEecCccccchHHHHHhhhccccC-CceEEEEecccc
Q psy5059 314 LLDIDLPGITKVPVGDQPDDIEAQIKQLVLHYIS-NPNSIILAVVTANTDMATSESLKLAKETDVDG-RRTLAVVTKIDL 391 (1036)
Q Consensus 314 vl~~~~~g~~~~~~~~~~~~~~~~~~~~~~~y~~-~~~~~~~~~v~~~~d~~~~~~~~la~~~d~~g-~rti~VitK~Dl 391 (1036)
++.||+||+...+ . ..+..|.. ... -....+++|+++.... ++...++...+.- .-+..|+||||.
T Consensus 183 ~vIIDT~G~~~~~-----~---~l~~~l~~-i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~~~~~i~gvVlnK~D~ 250 (432)
T 2v3c_C 183 VLIIDTAGRHKEE-----K---GLLEEMKQ-IKEITNPDEIILVIDGTIGQ---QAGIQAKAFKEAVGEIGSIIVTKLDG 250 (432)
T ss_dssp EEEEECCCSCSSH-----H---HHHHHHHH-TTSSSCCSEEEEEEEGGGGG---GHHHHHHHHHTTSCSCEEEEEECSSS
T ss_pred EEEEcCCCCcccc-----H---HHHHHHHH-HHHHhcCcceeEEeeccccH---HHHHHHHHHhhcccCCeEEEEeCCCC
Confidence 6788999987521 1 22333321 111 1345577888887654 3556666665443 338999999999
Q ss_pred cCCCchhhhhhcCcccccccccccccchHHHHHHHHHHhhccCCCcceeeeecccchhh-hHHHHHHhhhc
Q psy5059 392 MDAGTDAIDILCGRVIPVKLDVDGRRTYIEAQIKQLVLHYISNPNSIILAVVTANTDMA-TSESLKLAKET 461 (1036)
Q Consensus 392 ~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~v~~~i~~~~~ipla~ISA~td~~-~qeil~la~~v 461 (1036)
..++..+..+..---.|++ ++|....+ -....+.|..++|++.|.+ +..+++.+.+.
T Consensus 251 ~~~~g~~l~~~~~~~~pi~--~ig~Ge~~-----------~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~ 308 (432)
T 2v3c_C 251 SAKGGGALSAVAETKAPIK--FIGIGEGI-----------DDLEPFDPKKFISRLLGMGDLESLLEKAEDM 308 (432)
T ss_dssp CSTTHHHHHHHHHSSCCEE--EECCSSSS-----------SSCCBCCHHHHHHHHTCSSCSSTTSSTTTSC
T ss_pred ccchHHHHHHHHHHCCCEE--EeecCccc-----------cccccCCHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 8777655544433234443 23211100 0112455667778877776 66666555544
No 484
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=85.69 E-value=0.32 Score=51.38 Aligned_cols=22 Identities=41% Similarity=0.475 Sum_probs=20.2
Q ss_pred eEEEeccCCCchHHHHHhhhcC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGK 30 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~ 30 (1036)
.|+++|..|||||||++.|.|.
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999884
No 485
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=85.69 E-value=0.33 Score=53.27 Aligned_cols=23 Identities=26% Similarity=0.569 Sum_probs=21.2
Q ss_pred eEEEeccCCCchHHHHHhhhcCC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
.++++|..|||||||++.|.|.-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 58899999999999999999964
No 486
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=85.65 E-value=0.34 Score=49.50 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.4
Q ss_pred eEEEeccCCCchHHHHHhhhcC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGK 30 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~ 30 (1036)
.|+|+|.+||||||+.+.|.+.
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5889999999999999999885
No 487
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=85.41 E-value=0.39 Score=55.84 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=21.5
Q ss_pred CCCceEEeCcCCCChhhHHhhhcCC
Q psy5059 82 QLPQIVVVGTQSSGKSSVIESLVGK 106 (1036)
Q Consensus 82 ~lPqIvVvG~QSsGKSSlLEal~G~ 106 (1036)
..--|+|+|.+++|||+||+.|.|.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhh
Confidence 3445889999999999999999874
No 488
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=85.40 E-value=0.37 Score=47.89 Aligned_cols=23 Identities=13% Similarity=0.329 Sum_probs=21.2
Q ss_pred eEEEeccCCCchHHHHHhhhcCC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
.++++|..|+|||||++.|.|.-
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58899999999999999999965
No 489
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=85.33 E-value=0.41 Score=48.20 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=19.5
Q ss_pred eEEEeccCCCchHHHHHhhhc
Q psy5059 9 QIVVVGTQSSGKSSVIESLVG 29 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g 29 (1036)
.|+++|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999876
No 490
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=85.31 E-value=0.42 Score=48.12 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=19.4
Q ss_pred CeEEEeccCCCchHHHHHhhhc
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVG 29 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g 29 (1036)
+.|+++|.+||||||+.+.|..
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4599999999999999988854
No 491
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=85.15 E-value=0.94 Score=51.01 Aligned_cols=39 Identities=21% Similarity=0.361 Sum_probs=29.7
Q ss_pred cccceeecCCCccccCCCCCchhHHHHHHHHHHHhhcCCCcEEEEEeccccc
Q psy5059 240 VLNLTLVDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTD 291 (1036)
Q Consensus 240 ~~~LtlVDLPGi~~~~~~~q~~di~~~ir~lv~~yI~~~n~IIL~V~~An~D 291 (1036)
...+.+.|++|-.+ .+.+...|....++||+++...+-|
T Consensus 192 ~~~l~iwDt~GQe~-------------~r~~w~~yf~~a~~iIfV~dls~~d 230 (353)
T 1cip_A 192 DLHFKMFDVGGQRS-------------ERKKWIHCFEGVTAIIFCVALSDYD 230 (353)
T ss_dssp TEEEEEEEECCSGG-------------GGGGGGGGCTTCSEEEEEEEGGGGG
T ss_pred CeeEEEEeCCCchh-------------hhHHHHHHHhcCCEEEEEEECcccc
Confidence 46789999999432 2456678999999999888877644
No 492
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=85.08 E-value=0.35 Score=54.64 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=20.6
Q ss_pred eEEEeccCCCchHHHHHhhhcC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGK 30 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~ 30 (1036)
.|+|+|..||||||++++|+|.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999994
No 493
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=85.05 E-value=0.28 Score=54.29 Aligned_cols=26 Identities=12% Similarity=0.420 Sum_probs=23.7
Q ss_pred CCCeEEEeccCCCchHHHHHhhhcCC
Q psy5059 6 QLPQIVVVGTQSSGKSSVIESLVGKS 31 (1036)
Q Consensus 6 ~lp~i~vvg~~~~gkss~~~~~~g~~ 31 (1036)
.+|.++|+|..||||||+++.|.|..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 46899999999999999999999964
No 494
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=84.80 E-value=0.33 Score=51.86 Aligned_cols=31 Identities=23% Similarity=0.275 Sum_probs=24.5
Q ss_pred ceEEeCcCCCChhhHHhhhcCCCcCcccccc
Q psy5059 85 QIVVVGTQSSGKSSVIESLVGKSFLPRGIGI 115 (1036)
Q Consensus 85 qIvVvG~QSsGKSSlLEal~G~~flPrg~G~ 115 (1036)
-++++|..+|||||||..|+|...++-.+|.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~ 61 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGDPEYTVERGE 61 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCTTCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCceE
Confidence 4789999999999999999997323444553
No 495
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=84.79 E-value=0.39 Score=47.83 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=19.8
Q ss_pred CeEEEeccCCCchHHHHHhhhc
Q psy5059 8 PQIVVVGTQSSGKSSVIESLVG 29 (1036)
Q Consensus 8 p~i~vvg~~~~gkss~~~~~~g 29 (1036)
+.|+++|.+||||||+.+.|.-
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999865
No 496
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=84.71 E-value=0.35 Score=50.82 Aligned_cols=29 Identities=24% Similarity=0.279 Sum_probs=23.8
Q ss_pred ceEEeCcCCCChhhHHhhhcCCCcCcccccc
Q psy5059 85 QIVVVGTQSSGKSSVIESLVGKSFLPRGIGI 115 (1036)
Q Consensus 85 qIvVvG~QSsGKSSlLEal~G~~flPrg~G~ 115 (1036)
-++++|..+|||||||..|+|.. |-.+|.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~--~p~~G~ 60 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD--APTEGK 60 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS--CCSEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCceE
Confidence 47799999999999999999985 334553
No 497
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=84.65 E-value=0.37 Score=49.32 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=20.2
Q ss_pred eEEEeccCCCchHHHHHhhhcC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGK 30 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~ 30 (1036)
.|+|+|.+||||||+++.|.|.
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999883
No 498
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=84.63 E-value=0.45 Score=50.54 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=24.5
Q ss_pred ceEEeCcCCCChhhHHhhhcCCCcCccccccc
Q psy5059 85 QIVVVGTQSSGKSSVIESLVGKSFLPRGIGIV 116 (1036)
Q Consensus 85 qIvVvG~QSsGKSSlLEal~G~~flPrg~G~c 116 (1036)
.++++|..+|||||||..|+|.- |-.+|.+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G~i 59 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY--QPTAGEI 59 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS--CCSBSCE
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCCcEE
Confidence 47899999999999999999985 4445543
No 499
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=84.53 E-value=0.39 Score=50.84 Aligned_cols=28 Identities=21% Similarity=0.334 Sum_probs=23.6
Q ss_pred ceEEeCcCCCChhhHHhhhcCCCcCccccc
Q psy5059 85 QIVVVGTQSSGKSSVIESLVGKSFLPRGIG 114 (1036)
Q Consensus 85 qIvVvG~QSsGKSSlLEal~G~~flPrg~G 114 (1036)
-++++|..+|||||||..|+|.- |-.+|
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~--~p~~G 60 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD--KPTEG 60 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS--CCSEE
T ss_pred EEEEECCCCCcHHHHHHHHhcCC--CCCce
Confidence 47899999999999999999985 33445
No 500
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=84.50 E-value=0.36 Score=53.11 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=20.5
Q ss_pred eEEEeccCCCchHHHHHhhhcC
Q psy5059 9 QIVVVGTQSSGKSSVIESLVGK 30 (1036)
Q Consensus 9 ~i~vvg~~~~gkss~~~~~~g~ 30 (1036)
.|+++|.+|||||||++.|.|.
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999994
Done!