RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5059
(1036 letters)
>gnl|CDD|206738 cd08771, DLP_1, Dynamin_like protein family includes dynamins and
Mx proteins. The dynamin family of large
mechanochemical GTPases includes the classical dynamins
and dynamin-like proteins (DLPs) that are found
throughout the Eukarya. These proteins catalyze membrane
fission during clathrin-mediated endocytosis. Dynamin
consists of five domains; an N-terminal G domain that
binds and hydrolyzes GTP, a middle domain (MD) involved
in self-assembly and oligomerization, a pleckstrin
homology (PH) domain responsible for interactions with
the plasma membrane, GED, which is also involved in
self-assembly, and a proline arginine rich domain (PRD)
that interacts with SH3 domains on accessory proteins.
To date, three vertebrate dynamin genes have been
identified; dynamin 1, which is brain specific, mediates
uptake of synaptic vesicles in presynaptic terminals;
dynamin-2 is expressed ubiquitously and similarly
participates in membrane fission; mutations in the MD,
PH and GED domains of dynamin 2 have been linked to
human diseases such as Charcot-Marie-Tooth peripheral
neuropathy and rare forms of centronuclear myopathy.
Dynamin 3 participates in megakaryocyte progenitor
amplification, and is also involved in cytoplasmic
enlargement and the formation of the demarcation
membrane system. This family also includes
interferon-induced Mx proteins that inhibit a wide range
of viruses by blocking an early stage of the replication
cycle. Dynamin oligomerizes into helical structures
around the neck of budding vesicles in a GTP
hydrolysis-dependent manner.
Length = 278
Score = 252 bits (646), Expect = 1e-76
Identities = 125/242 (51%), Positives = 145/242 (59%), Gaps = 57/242 (23%)
Query: 81 IQLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDREKRTAAA 140
I LPQIVVVG QSSGKSSV+E+LVG+ FLPRG GI TRRPL LQL P
Sbjct: 1 IDLPQIVVVGDQSSGKSSVLEALVGRDFLPRGSGICTRRPLELQLRRSP----------- 49
Query: 141 GTMDLDAWGQFLHTKDKVFRDFDDIRREIEDETERLAGKNKGICTMDLDAWGQFLHTKDK 200
EDE E WG+FLH K K
Sbjct: 50 -------------------------SESDEDEKEE---------------WGEFLHLKSK 69
Query: 201 VFRDFDDIRREIEDETERLAGKNKGICSEPIILKIYSTSVLNLTLVDLPGITKVPVGDQP 260
F DF+++R EIE ET+R+AG+NKGI EPI L+I S V NLTLVDLPG+ KVPVGDQP
Sbjct: 70 EFTDFEELREEIEKETDRVAGENKGISPEPIRLEIESPDVPNLTLVDLPGLIKVPVGDQP 129
Query: 261 DDIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKETDVDGRRT------LDL 314
+DIE QI+ +V YISNP SIILAVV AN D+A SE+LKLA+E D +G RT LDL
Sbjct: 130 EDIEEQIRSMVKSYISNPRSIILAVVPANVDLANSEALKLAREVDPEGERTIGVLTKLDL 189
Query: 315 LD 316
+D
Sbjct: 190 MD 191
Score = 179 bits (457), Expect = 1e-50
Identities = 84/154 (54%), Positives = 106/154 (68%), Gaps = 6/154 (3%)
Query: 413 VDGRRTYIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKETDVDGRRTLAVV 472
V + IE QI+ +V YISNP SIILAVV AN D+A SE+LKLA+E D +G RT+ V+
Sbjct: 125 VGDQPEDIEEQIRSMVKSYISNPRSIILAVVPANVDLANSEALKLAREVDPEGERTIGVL 184
Query: 473 TKIDLMDAGTDAIDILC---GRVIPVKLGIIGVVNRSQQDIIDNKSIKDAIKDEAAFLQR 529
TK+DLMD GTDA DIL G+VIP+KLG +GVVNRSQ+DI KSI++A++ E F +
Sbjct: 185 TKLDLMDPGTDAEDILLLLQGKVIPLKLGYVGVVNRSQKDIDSGKSIEEALEAEEEFFET 244
Query: 530 KYP---TLASRNGTLYLAKTLNRLLMHHIRDCLP 560
ASR GT L K L++LL HIR+ LP
Sbjct: 245 HPWYKLLPASRVGTPALRKRLSKLLQKHIRESLP 278
Score = 146 bits (370), Expect = 6e-39
Identities = 66/107 (61%), Positives = 81/107 (75%), Gaps = 3/107 (2%)
Query: 308 GRRTLDLLDIDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMATSE 367
+L +DLPG+ KVPVGDQP+DIE QI+ +V YISNP SIILAVV AN D+A SE
Sbjct: 106 SPDVPNLTLVDLPGLIKVPVGDQPEDIEEQIRSMVKSYISNPRSIILAVVPANVDLANSE 165
Query: 368 SLKLAKETDVDGRRTLAVVTKIDLMDAGTDAIDILC---GRVIPVKL 411
+LKLA+E D +G RT+ V+TK+DLMD GTDA DIL G+VIP+KL
Sbjct: 166 ALKLAREVDPEGERTIGVLTKLDLMDPGTDAEDILLLLQGKVIPLKL 212
Score = 96.2 bits (240), Expect = 9e-22
Identities = 37/50 (74%), Positives = 40/50 (80%)
Query: 5 IQLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPK 54
I LPQIVVVG QSSGKSSV+E+LVG+ FLPRG GI TRRPL LQL P
Sbjct: 1 IDLPQIVVVGDQSSGKSSVLEALVGRDFLPRGSGICTRRPLELQLRRSPS 50
Score = 40.3 bits (95), Expect = 0.004
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 772 LASRNGTLYLAKTLNRLLMHHIRDCLP 798
ASR GT L K L++LL HIR+ LP
Sbjct: 252 PASRVGTPALRKRLSKLLQKHIRESLP 278
>gnl|CDD|216255 pfam01031, Dynamin_M, Dynamin central region. This region lies
between the GTPase domain, see pfam00350, and the
pleckstrin homology (PH) domain, see pfam00169.
Length = 296
Score = 243 bits (624), Expect = 3e-73
Identities = 88/178 (49%), Positives = 120/178 (67%), Gaps = 4/178 (2%)
Query: 769 YPTLASRNGTLYLAKTLNRLLMHHIRDCLPDLKTRVNVMISQFQTLLNSYG----EDVSD 824
Y TLA R GT YLAK LN+ L++HIR LPDLK+++N + + + L YG ED ++
Sbjct: 50 YRTLAERCGTPYLAKKLNQELVNHIRKSLPDLKSQINKKLQETEKELERYGDDPPEDPAE 109
Query: 825 KSQTLLQIITKFASAYCSTVEGTARNIETTELCGGARICYIFHEIFGKVLDGINPLDGLT 884
K LL +IT F + + ++G ++ T EL GGARI YIFHE F K+L I+P + L+
Sbjct: 110 KGAFLLDLITAFNQDFKNLIDGEEDDLSTNELSGGARIRYIFHEWFPKLLKSIDPFEKLS 169
Query: 885 KMDILTAIRNATGPRPALFVPEVSFELLVKRQIRRLEEPSQRCVELVHEEMQRIIQHC 942
+I TAIRN G R LFVPE +FELLVK+QI+RLEEP+ +CV+LV+EE++RI
Sbjct: 170 DEEIRTAIRNYRGRRLPLFVPEKAFELLVKKQIKRLEEPALKCVDLVYEELRRIFLKI 227
Score = 173 bits (442), Expect = 3e-48
Identities = 63/130 (48%), Positives = 87/130 (66%), Gaps = 6/130 (4%)
Query: 484 AIDILCGRVIPVKLGIIGVVNRSQQDIIDNKSIKDAIKDEAAFLQ--RKYPTLASRNGTL 541
A+DIL +V P+KLG +GVVNRSQQDI D KSIK+A++DE AF + Y TLA R GT
Sbjct: 1 AVDILENKVYPLKLGYVGVVNRSQQDINDKKSIKEALEDERAFFENHPHYRTLAERCGTP 60
Query: 542 YLAKTLNRLLMHHIRDCLPDLKTRVNVMISQFQTLLNSYG----EDVSDKSQTLLQIITK 597
YLAK LN+ L++HIR LPDLK+++N + + + L YG ED ++K LL +IT
Sbjct: 61 YLAKKLNQELVNHIRKSLPDLKSQINKKLQETEKELERYGDDPPEDPAEKGAFLLDLITA 120
Query: 598 FASAYCSTVE 607
F + + ++
Sbjct: 121 FNQDFKNLID 130
Score = 66.8 bits (164), Expect = 1e-11
Identities = 26/56 (46%), Positives = 32/56 (57%)
Query: 621 PALHERIVEVVTQLLRRRLPATNTMVENLLAIELAYINTKHPDFHKDAALVPSLIK 676
P L E I EVV +LR +L T MV +L+ +ELAYINT HPDF V +
Sbjct: 236 PNLKEAIKEVVEDILREQLEPTEKMVRDLIDMELAYINTNHPDFIGGLQAVKKKEE 291
>gnl|CDD|197491 smart00053, DYNc, Dynamin, GTPase. Large GTPases that mediate
vesicle trafficking. Dynamin participates in the
endocytic uptake of receptors, associated ligands, and
plasma membrane following an exocytic event.
Length = 240
Score = 218 bits (556), Expect = 1e-64
Identities = 118/260 (45%), Positives = 146/260 (56%), Gaps = 66/260 (25%)
Query: 65 VINKLQDVFNTVGTDA-IQLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLIL 123
++NKLQD F+ +G + LPQI VVG QS+GKSSV+E+ VG+ FLPRG GIVTRRPLIL
Sbjct: 7 LVNKLQDAFSALGQSCDLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLIL 66
Query: 124 QLYYCPKDDREKRTAAAGTMDLDAWGQFLHTKDKVFRDFDDIRREIEDETERLAGKNKGI 183
QL + + +FLH
Sbjct: 67 QLIKSKTE----------------YAEFLH------------------------------ 80
Query: 184 CTMDLDAWGQFLHTKDKVFRDFDDIRREIEDETERLAGKNKGICSEPIILKIYSTSVLNL 243
K K F DFD++R EIE ET+R+ G NKGI PI L++YS VLNL
Sbjct: 81 -------------CKGKKFTDFDEVRNEIEAETDRVTGTNKGISGIPINLRVYSPHVLNL 127
Query: 244 TLVDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKE 303
TL+DLPGITKV VGDQP DIE QIK+++ +IS +ILAV ANTD+A S++LKLAKE
Sbjct: 128 TLIDLPGITKVAVGDQPPDIEYQIKKMIKQFISREECLILAVTPANTDLANSDALKLAKE 187
Query: 304 TDVDGRRT------LDLLDI 317
D G RT LDL+D
Sbjct: 188 VDPQGLRTIGVITKLDLMDE 207
Score = 135 bits (340), Expect = 2e-35
Identities = 63/109 (57%), Positives = 79/109 (72%), Gaps = 6/109 (5%)
Query: 312 LDLLDIDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKL 371
L+L IDLPGITKV VGDQP DIE QIK+++ +IS +ILAV ANTD+A S++LKL
Sbjct: 125 LNLTLIDLPGITKVAVGDQPPDIEYQIKKMIKQFISREECLILAVTPANTDLANSDALKL 184
Query: 372 AKETDVDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKLDVDGRRTYI 420
AKE D G RT+ V+TK+DLMD GTDA DIL +++P+ RR YI
Sbjct: 185 AKEVDPQGLRTIGVITKLDLMDEGTDARDILENKLLPL------RRGYI 227
Score = 118 bits (298), Expect = 7e-30
Identities = 53/91 (58%), Positives = 70/91 (76%)
Query: 420 IEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKETDVDGRRTLAVVTKIDLMD 479
IE QIK+++ +IS +ILAV ANTD+A S++LKLAKE D G RT+ V+TK+DLMD
Sbjct: 147 IEYQIKKMIKQFISREECLILAVTPANTDLANSDALKLAKEVDPQGLRTIGVITKLDLMD 206
Query: 480 AGTDAIDILCGRVIPVKLGIIGVVNRSQQDI 510
GTDA DIL +++P++ G IGVVNRSQ+DI
Sbjct: 207 EGTDARDILENKLLPLRRGYIGVVNRSQKDI 237
Score = 77.6 bits (191), Expect = 9e-16
Identities = 34/45 (75%), Positives = 39/45 (86%)
Query: 5 IQLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQL 49
+ LPQI VVG QS+GKSSV+E+ VG+ FLPRG GIVTRRPLILQL
Sbjct: 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQL 68
>gnl|CDD|215874 pfam00350, Dynamin_N, Dynamin family.
Length = 168
Score = 160 bits (407), Expect = 2e-45
Identities = 86/227 (37%), Positives = 112/227 (49%), Gaps = 65/227 (28%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDREKRTAAAGTMDL 145
I VVG QS+GKSSV+ +L+G+ LPRG G TRRPL+L+L P
Sbjct: 1 IAVVGDQSAGKSSVLNALLGRDILPRGPGPTTRRPLVLRLGEEPGAIPGAVKV------- 53
Query: 146 DAWGQFLHTKDKVFRDFDDIRREIEDETERLAGKNKGICTMDLDAWGQFLHTKDKVFRDF 205
++ D ++ ED F
Sbjct: 54 ---------------EYKDGLKKFED---------------------------------F 65
Query: 206 DDIRREIEDETERLAGKNKGICSEPIILKIYSTSVLNLTLVDLPGITKVPVGDQPDDIEA 265
++R EIEDET++++G KGI SEPIIL+I S V LTLVD PG+ V VGDQ
Sbjct: 66 SELREEIEDETDKISGTGKGISSEPIILEILSPLVPGLTLVDTPGLDSVAVGDQD----- 120
Query: 266 QIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKETDVDGRRTL 312
L YI P IILAVV AN D++TSE+L LA+E D +G+RT+
Sbjct: 121 ----LTEEYI-KPADIILAVVDANHDLSTSEALFLAREVDPNGKRTI 162
Score = 78.4 bits (194), Expect = 9e-17
Identities = 37/112 (33%), Positives = 50/112 (44%), Gaps = 11/112 (9%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDREKRTAAAVINKL 69
I VVG QS+GKSSV+ +L+G+ LPRG G TRRPL+L+L E +
Sbjct: 1 IAVVGDQSAGKSSVLNALLGRDILPRGPGPTTRRPLVLRL------GEEPGAIPGAVKVE 54
Query: 70 QDVFNTVGTDAIQLPQIVVVGTQ-----SSGKSSVIESLVGKSFLPRGIGIV 116
D +L + + T G SS L S L G+ +V
Sbjct: 55 YKDGLKKFEDFSELREEIEDETDKISGTGKGISSEPIILEILSPLVPGLTLV 106
Score = 73.4 bits (181), Expect = 6e-15
Identities = 35/73 (47%), Positives = 45/73 (61%), Gaps = 10/73 (13%)
Query: 317 IDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKETD 376
+D PG+ V VGDQ L YI P IILAVV AN D++TSE+L LA+E D
Sbjct: 106 VDTPGLDSVAVGDQD---------LTEEYI-KPADIILAVVDANHDLSTSEALFLAREVD 155
Query: 377 VDGRRTLAVVTKI 389
+G+RT+ V+TK
Sbjct: 156 PNGKRTIGVLTKD 168
Score = 57.3 bits (139), Expect = 2e-09
Identities = 27/49 (55%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 427 LVLHYISNPNSIILAVVTANTDMATSESLKLAKETDVDGRRTLAVVTKI 475
L YI P IILAVV AN D++TSE+L LA+E D +G+RT+ V+TK
Sbjct: 121 LTEEYI-KPADIILAVVDANHDLSTSEALFLAREVDPNGKRTIGVLTKD 168
>gnl|CDD|202159 pfam02212, GED, Dynamin GTPase effector domain.
Length = 90
Score = 103 bits (260), Expect = 2e-26
Identities = 38/72 (52%), Positives = 51/72 (70%)
Query: 692 KRDCDVIERLIKSYFYIIRKSIQDTVPKAIMHFLVNYVKDNLQSELVTHLYKADSASELL 751
+ + + I RL+KSYF I+RK I D +PKAIM+FLVN K++LQ EL+ LYK + ELL
Sbjct: 1 ELEVEEIRRLLKSYFNIVRKRIADQIPKAIMYFLVNESKESLQKELLQLLYKKEDLDELL 60
Query: 752 NESEWVAQRRKE 763
E +AQ+RKE
Sbjct: 61 KEDPEIAQKRKE 72
Score = 103 bits (260), Expect = 2e-26
Identities = 38/72 (52%), Positives = 51/72 (70%)
Query: 962 KRDCDVIERLIKSYFYIIRKSIQDTVPKAIMHFLVNYVKDNLQSELVTHLYKADSASELL 1021
+ + + I RL+KSYF I+RK I D +PKAIM+FLVN K++LQ EL+ LYK + ELL
Sbjct: 1 ELEVEEIRRLLKSYFNIVRKRIADQIPKAIMYFLVNESKESLQKELLQLLYKKEDLDELL 60
Query: 1022 NESEWVAQRRKE 1033
E +AQ+RKE
Sbjct: 61 KEDPEIAQKRKE 72
>gnl|CDD|128597 smart00302, GED, Dynamin GTPase effector domain.
Length = 92
Score = 92.3 bits (230), Expect = 2e-22
Identities = 36/76 (47%), Positives = 50/76 (65%)
Query: 690 KEKRDCDVIERLIKSYFYIIRKSIQDTVPKAIMHFLVNYVKDNLQSELVTHLYKADSASE 749
E + + I+ L+KSYF I+ K++ D VPKAIM+ LVN KD+LQ+EL+ LYK + E
Sbjct: 1 YEDSELEEIKSLVKSYFTIVSKTLADQVPKAIMYLLVNESKDSLQNELLALLYKEELLDE 60
Query: 750 LLNESEWVAQRRKEAS 765
LL E +A +RKE
Sbjct: 61 LLEEDPEIASKRKELK 76
Score = 91.9 bits (229), Expect = 2e-22
Identities = 36/74 (48%), Positives = 50/74 (67%)
Query: 960 KEKRDCDVIERLIKSYFYIIRKSIQDTVPKAIMHFLVNYVKDNLQSELVTHLYKADSASE 1019
E + + I+ L+KSYF I+ K++ D VPKAIM+ LVN KD+LQ+EL+ LYK + E
Sbjct: 1 YEDSELEEIKSLVKSYFTIVSKTLADQVPKAIMYLLVNESKDSLQNELLALLYKEELLDE 60
Query: 1020 LLNESEWVAQRRKE 1033
LL E +A +RKE
Sbjct: 61 LLEEDPEIASKRKE 74
>gnl|CDD|223771 COG0699, COG0699, Predicted GTPases (dynamin-related) [General
function prediction only].
Length = 546
Score = 84.2 bits (208), Expect = 1e-16
Identities = 102/503 (20%), Positives = 190/503 (37%), Gaps = 48/503 (9%)
Query: 310 RTLDLLDIDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESL 369
R L L D+DLPG+ KVP+ +P+DI + + L L I N++IL + N D S+
Sbjct: 51 RLLQLTDVDLPGLRKVPLSLEPEDIAQEDELLDLGKIEIENALILLGIAPNADEEAELSI 110
Query: 370 KLAKETDVDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPV----KLDVDGRRTYIEAQIK 425
++ +E D V TKI+ ++ GT+ IL + V + D+ +T +EA +K
Sbjct: 111 EVIREAD-------RVPTKINFLNGGTNLTLILGNGDVLVVDALETDIQLLKTALEALVK 163
Query: 426 QLVLHYISNPNSIILAVVTANTD---MATSESLKLAKETDVDGRRTLAVVTKIDLMD-AG 481
+L ++ +P + + + + + + DL +
Sbjct: 164 EL-EYFAEHPLLEDNEKLVLLPYLKKLLSKILELHLRLLPKYDKLQDVIQLSQDLFENEV 222
Query: 482 TDAIDILCGRVIPVKLGIIGVVNRSQQDIIDNKSIKDAIKDEAAFLQRKYPTLASRNGTL 541
I L R+ + G +N ++ S + E A + L+
Sbjct: 223 LAVIQTLLKRLSELVRGARIRLNIILFSDLEEVSDSPVLLKELASKGERPSLLSGLTLLD 282
Query: 542 YLAKTLNRLLMHHIRDCLPDLKTRVNVMI---------SQFQTLLNSYGEDVSDKSQTLL 592
L +T I L L + + ++ S F L + E V+ +
Sbjct: 283 TLVETPIGQFDTQINQLLRKLISELVRILLKELESASSSPFPKLSEALEEVVNQLKNKVD 342
Query: 593 QIITKFASAYCSTVE-----ENGIFKFIESKKNPALHERIVEVVTQLLRRRLP------- 640
+ A E ++ +F + A+ ++++ + LLR
Sbjct: 343 SGLESGLLAIIDIEERYINTKHPLFLSLRQAA--AILSKVLDNLEALLRSLDDSRLRELS 400
Query: 641 --ATNTMVENLLAIELAYI-NTKHPDFH---KDAALVPSLIKSAEEDYQRR-TLSEKEKR 693
N+++ N L L + + + + L L E + L E++
Sbjct: 401 DMGLNSLLSNNLEEHLLGSDFSLYKFLNEFLELKKLDALLATLGEALRRLTGLLPERKTL 460
Query: 694 DCDVIERLIKSYFYIIRKSIQDTVPKAIMHFLVNYVKDNLQSELVTHLYKADSASELLNE 753
+ +I+ L++S I+ + I+D+V KAI L N K Q + + LY ELL
Sbjct: 461 EKQLIKSLLESL-LILAQKIRDSVLKAIFELLKNKRKRLAQKQRLKRLYLEQLEDELLRT 519
Query: 754 SEWVAQRR-KEASDTKYPTLASR 775
+E + + R + LA+R
Sbjct: 520 AEEILELRLLLEQFLEALKLAAR 542
Score = 77.3 bits (190), Expect = 2e-14
Identities = 43/115 (37%), Positives = 62/115 (53%)
Query: 191 WGQFLHTKDKVFRDFDDIRREIEDETERLAGKNKGICSEPIILKIYSTSVLNLTLVDLPG 250
+F H F DF +R E E ET + G+N GI I LKI + +L LT VDLPG
Sbjct: 3 EFEFTHAPIFRFLDFSRVRSEKEKETLKDDGRNSGITEVIIELKIAAERLLQLTDVDLPG 62
Query: 251 ITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKETD 305
+ KVP+ +P+DI + + L L I N++IL + N D S+++ +E D
Sbjct: 63 LRKVPLSLEPEDIAQEDELLDLGKIEIENALILLGIAPNADEEAELSIEVIREAD 117
Score = 47.2 bits (112), Expect = 4e-05
Identities = 44/285 (15%), Positives = 95/285 (33%), Gaps = 45/285 (15%)
Query: 725 LVNYVKDNLQSELVTHLYKADSASELLNESEWVAQRRKEASDTKYPTLASRNGTLYLAKT 784
V D L++++ L K + + + E ++ YL K
Sbjct: 139 GDVLVVDALETDIQ--LLKTALEALVKELEYFAEHPLLEDNEKL-------VLLPYLKKL 189
Query: 785 LNRLLMHHIRDCLPDLKTRVNVMISQFQTLLNSYGEDVSDKSQTLLQIITKFASAYCSTV 844
L+++L H+R K + +D+ + +L +I
Sbjct: 190 LSKILELHLRLLPKYDKLQDV----------IQLSQDLFEN--EVLAVIQTLLKRL---- 233
Query: 845 EGTARNIETTELCGGARICYIFHEIFGKVLDGINPLDGLTKMDILTAIRNATGPRPALFV 904
+EL GARI + L+ ++ +L + G RP+L
Sbjct: 234 ---------SELVRGARIRLNII--------LFSDLEEVSDSPVLLKELASKGERPSLLS 276
Query: 905 PEVSFELLVKRQIRRLEEPSQRCVELVHEEMQRIIQHCEKEGNIPATTSSRTLSEKEKRD 964
+ LV+ I + + + + + E+ RI KE +++ LSE +
Sbjct: 277 GLTLLDTLVETPIGQFDTQINQLLRKLISELVRI---LLKELESASSSPFPKLSEALEEV 333
Query: 965 CDVIERLIKSYFYIIRKSIQDTVPKAIMHFLVNYVKDNLQSELVT 1009
+ ++ + S +I D + I ++ + +++
Sbjct: 334 VNQLKNKVDSGLESGLLAIIDIEERYINTKHPLFLSLRQAAAILS 378
Score = 42.6 bits (100), Expect = 0.001
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 956 TLSEKEKRDCDVIERLIKSYFYIIRKSIQDTVPKAIMHFLVNYVKDNLQSELVTHLYKAD 1015
L E++ + +I+ L++S I+ + I+D+V KAI L N K Q + + LY
Sbjct: 453 LLPERKTLEKQLIKSLLESL-LILAQKIRDSVLKAIFELLKNKRKRLAQKQRLKRLYLEQ 511
Query: 1016 SASELLNESEWVAQRRKES 1034
ELL +E + + R
Sbjct: 512 LEDELLRTAEEILELRLLL 530
>gnl|CDD|206739 cd09912, DLP_2, Dynamin-like protein including dynamins,
mitofusins, and guanylate-binding proteins. The
dynamin family of large mechanochemical GTPases
includes the classical dynamins and dynamin-like
proteins (DLPs) that are found throughout the Eukarya.
This family also includes bacterial DLPs. These
proteins catalyze membrane fission during
clathrin-mediated endocytosis. Dynamin consists of five
domains; an N-terminal G domain that binds and
hydrolyzes GTP, a middle domain (MD) involved in
self-assembly and oligomerization, a pleckstrin
homology (PH) domain responsible for interactions with
the plasma membrane, GED, which is also involved in
self-assembly, and a proline arginine rich domain (PRD)
that interacts with SH3 domains on accessory proteins.
To date, three vertebrate dynamin genes have been
identified; dynamin 1, which is brain specific,
mediates uptake of synaptic vesicles in presynaptic
terminals; dynamin-2 is expressed ubiquitously and
similarly participates in membrane fission; mutations
in the MD, PH and GED domains of dynamin 2 have been
linked to human diseases such as Charcot-Marie-Tooth
peripheral neuropathy and rare forms of centronuclear
myopathy. Dynamin 3 participates in megakaryocyte
progenitor amplification, and is also involved in
cytoplasmic enlargement and the formation of the
demarcation membrane system. This family also includes
mitofusins (MFN1 and MFN2 in mammals) that are involved
in mitochondrial fusion. Dynamin oligomerizes into
helical structures around the neck of budding vesicles
in a GTP hydrolysis-dependent manner.
Length = 180
Score = 38.3 bits (90), Expect = 0.008
Identities = 14/39 (35%), Positives = 25/39 (64%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQ 48
+ VVG S+GKS+++ +L+G+ LP G+ T +L+
Sbjct: 3 LAVVGEFSAGKSTLLNALLGEEVLPTGVTPTTAVITVLR 41
Score = 38.3 bits (90), Expect = 0.008
Identities = 14/39 (35%), Positives = 25/39 (64%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQ 124
+ VVG S+GKS+++ +L+G+ LP G+ T +L+
Sbjct: 3 LAVVGEFSAGKSTLLNALLGEEVLPTGVTPTTAVITVLR 41
>gnl|CDD|179790 PRK04213, PRK04213, GTP-binding protein; Provisional.
Length = 201
Score = 34.5 bits (80), Expect = 0.16
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 9/57 (15%)
Query: 233 LKIYSTSVLNLTLVDLPG---ITKVPVGDQPDDIEAQIKQLVLHYI-SNPNSIILAV 285
K + L DLPG ++ V P +++ +IK ++ YI N + I+ AV
Sbjct: 44 RKPNHYDWGDFILTDLPGFGFMSGV-----PKEVQEKIKDEIVRYIEDNADRILAAV 95
Score = 29.1 bits (66), Expect = 8.7
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 8 PQIVVVGTQSSGKSSVIESLVGKSFLPRG--IGIVTRRP 44
P+IV VG + GKS+++ L GK G G VTR+P
Sbjct: 10 PEIVFVGRSNVGKSTLVRELTGKKV-RVGKRPG-VTRKP 46
Score = 29.1 bits (66), Expect = 8.7
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 84 PQIVVVGTQSSGKSSVIESLVGKSFLPRG--IGIVTRRP 120
P+IV VG + GKS+++ L GK G G VTR+P
Sbjct: 10 PEIVFVGRSNVGKSTLVRELTGKKV-RVGKRPG-VTRKP 46
>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of
small guanosine triphosphatases (GTPases). Ras-like
GTPase superfamily. The Ras-like superfamily of small
GTPases consists of several families with an extremely
high degree of structural and functional similarity.
The Ras superfamily is divided into at least four
families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf
families. This superfamily also includes proteins like
the GTP translation factors, Era-like GTPases, and
G-alpha chain of the heterotrimeric G proteins. Members
of the Ras superfamily regulate a wide variety of
cellular functions: the Ras family regulates gene
expression, the Rho family regulates cytoskeletal
reorganization and gene expression, the Rab and
Sar1/Arf families regulate vesicle trafficking, and the
Ran family regulates nucleocytoplasmic transport and
microtubule organization. The GTP translation factor
family regulates initiation, elongation, termination,
and release in translation, and the Era-like GTPase
family regulates cell division, sporulation, and DNA
replication. Members of the Ras superfamily are
identified by the GTP binding site, which is made up of
five characteristic sequence motifs, and the switch I
and switch II regions.
Length = 161
Score = 34.0 bits (78), Expect = 0.17
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 11 VVVGTQSSGKSSVIESLVGKSFLPRG-IGIVTRRP 44
VVVG GKSS++ +L+G + TR P
Sbjct: 1 VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDP 35
Score = 34.0 bits (78), Expect = 0.17
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 87 VVVGTQSSGKSSVIESLVGKSFLPRG-IGIVTRRP 120
VVVG GKSS++ +L+G + TR P
Sbjct: 1 VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDP 35
>gnl|CDD|219856 pfam08477, Miro, Miro-like protein. Mitochondrial Rho proteins
(Miro-1, and Miro-2), are atypical Rho GTPases. They
have a unique domain organisation, with tandem
GTP-binding domains and two EF hand domains
(pfam00036), that may bind calcium. They are also
larger than classical small GTPases. It has been
proposed that they are involved in mitochondrial
homeostasis and apoptosis.
Length = 116
Score = 32.0 bits (73), Expect = 0.45
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSFLP 34
+VV+G + SGKSS++ LVG F P
Sbjct: 2 VVVIGDKGSGKSSLLSQLVGGEFPP 26
Score = 32.0 bits (73), Expect = 0.45
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSFLP 110
+VV+G + SGKSS++ LVG F P
Sbjct: 2 VVVIGDKGSGKSSLLSQLVGGEFPP 26
>gnl|CDD|217424 pfam03205, MobB, Molybdopterin guanine dinucleotide synthesis
protein B. This protein contains a P-loop.
Length = 126
Score = 31.2 bits (71), Expect = 1.1
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 8 PQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVT 41
P ++VVG + SGK+++I L+ RG +
Sbjct: 1 PIVLVVGPKDSGKTTLIRKLLNYL-KRRGYRVAV 33
Score = 31.2 bits (71), Expect = 1.1
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 84 PQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVT 117
P ++VVG + SGK+++I L+ RG +
Sbjct: 1 PIVLVVGPKDSGKTTLIRKLLNYL-KRRGYRVAV 33
>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal.
Miro1 subfamily. Miro (mitochondrial Rho) proteins have
tandem GTP-binding domains separated by a linker region
containing putative calcium-binding EF hand motifs.
Genes encoding Miro-like proteins were found in several
eukaryotic organisms. This CD represents the N-terminal
GTPase domain of Miro proteins. These atypical Rho
GTPases have roles in mitochondrial homeostasis and
apoptosis. Most Rho proteins contain a lipid
modification site at the C-terminus; however, Miro is
one of few Rho subfamilies that lack this feature.
Length = 168
Score = 30.4 bits (69), Expect = 2.7
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSF 32
IV++G + GKSS+I SLV + F
Sbjct: 5 IVLIGDEGVGKSSLIMSLVSEEF 27
Score = 30.4 bits (69), Expect = 2.7
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSF 108
IV++G + GKSS+I SLV + F
Sbjct: 5 IVLIGDEGVGKSSLIMSLVSEEF 27
>gnl|CDD|180481 PRK06231, PRK06231, F0F1 ATP synthase subunit B; Validated.
Length = 205
Score = 30.6 bits (69), Expect = 2.8
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 9/69 (13%)
Query: 408 PVKLDVDGRRTYIEAQI------KQLVLHYISNPNS---IILAVVTANTDMATSESLKLA 458
P + ++ R+ IEA+I KQ + N LA D A E+L+L
Sbjct: 72 PTQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQANYEALQLK 131
Query: 459 KETDVDGRR 467
E + + R
Sbjct: 132 SELEKEANR 140
>gnl|CDD|222194 pfam13521, AAA_28, AAA domain.
Length = 162
Score = 30.2 bits (69), Expect = 3.1
Identities = 8/18 (44%), Positives = 15/18 (83%)
Query: 10 IVVVGTQSSGKSSVIESL 27
IV+ G S+GK++++E+L
Sbjct: 2 IVITGGPSTGKTTLLEAL 19
Score = 30.2 bits (69), Expect = 3.1
Identities = 8/18 (44%), Positives = 15/18 (83%)
Query: 86 IVVVGTQSSGKSSVIESL 103
IV+ G S+GK++++E+L
Sbjct: 2 IVITGGPSTGKTTLLEAL 19
>gnl|CDD|222036 pfam13304, AAA_21, AAA domain.
Length = 256
Score = 30.9 bits (69), Expect = 3.4
Identities = 26/195 (13%), Positives = 63/195 (32%), Gaps = 7/195 (3%)
Query: 87 VVVGTQSSGKSSVIESLVG-KSFLPRGIGIVTRRPLILQLYYCPKDDREKRTAAAGTMDL 145
V++G SGKS+++++L L G+ + + ++L D+ E + L
Sbjct: 3 VIIGPNGSGKSNLLKALALLLLLLSLGLTLDRGLNVGIKLLPFLLDENEI------EIPL 56
Query: 146 DAWGQFLHTKDKVFRDFDDIRREIEDETERLAGKNKGICTMDLDAWGQFLHTKDKVFRDF 205
+ + +R ++ +E E + + + + + R+
Sbjct: 57 EFEIEEFLIDGIRYRYGFELDKEDILEELLYEYRKGEELLFERERSKESFEKSPEKKREL 116
Query: 206 DDIRREIEDETERLAGKNKGICSEPIILKIYSTSVLNLTLVDLPGITKVPVGDQPDDIEA 265
+R + L+ E ++ + S + L +L I +
Sbjct: 117 RGLREVLLLLNLSLSSFLLLASLEILLSILLPFSFILGNLRNLRNIELKLLDLVKRLFLE 176
Query: 266 QIKQLVLHYISNPNS 280
+L + S
Sbjct: 177 SDLLRLLKLLIKGIS 191
>gnl|CDD|225727 COG3186, COG3186, Phenylalanine-4-hydroxylase [Amino acid transport
and metabolism].
Length = 291
Score = 30.9 bits (70), Expect = 3.6
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 15/64 (23%)
Query: 874 LDGIN----PLDGLTKMD-ILTAIRNATG----PRPALFVPEVSFELLVKRQ------IR 918
LDG+ PL + D I ++ TG P L +V F+LL R+ +R
Sbjct: 70 LDGLEALGLPLSRIPDFDEINRVLQRETGWQVVAVPGLVPFDVFFDLLANRRFPVATFMR 129
Query: 919 RLEE 922
+E
Sbjct: 130 TPDE 133
>gnl|CDD|221789 pfam12818, Tegument_dsDNA, dsDNA viral tegument protein. This is a
family of tegument proteins from double-stranded DNA
herpesvirus and related viral species.
Length = 282
Score = 30.8 bits (70), Expect = 3.7
Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 11/76 (14%)
Query: 241 LNLTLVDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPN-SIILAVVTANTDMATSESLK 299
L L L LP + PD E +++ V Y N S++ VV+ +
Sbjct: 194 LTLFLSKLPQDILSQLKASPDAEEDTVEEFVSGYFLNVYCSVVFLVVSDDPIATPGGQ-- 251
Query: 300 LAKETDVDGRRTLDLL 315
GR LD+L
Sbjct: 252 --------GRTPLDIL 259
>gnl|CDD|239983 cd04610, CBS_pair_ParBc_assoc, This cd contains two tandem repeats
of the cystathionine beta-synthase (CBS pair) domains
associated with a ParBc (ParB-like nuclease) domain
downstream. CBS is a small domain originally identified
in cystathionine beta-synthase and subsequently found in
a wide range of different proteins. CBS domains usually
come in tandem repeats, which associate to form a
so-called Bateman domain or a CBS pair which is
reflected in this model. The interface between the two
CBS domains forms a cleft that is a potential ligand
binding site. The CBS pair coexists with a variety of
other functional domains. It has been proposed that the
CBS domain may play a regulatory role, although its
exact function is unknown.
Length = 107
Score = 29.3 bits (66), Expect = 3.8
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 356 VVTANTDMATSESLKLAKETD------VDGRRTLAVVTKIDLMDA 394
V+T + D + +KL KET VD + + +V+ DL+
Sbjct: 4 VITVSPDNTVKDVIKLIKETGHDGFPVVDNGKVVGIVSARDLLGK 48
Score = 29.3 bits (66), Expect = 3.8
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 442 VVTANTDMATSESLKLAKETD------VDGRRTLAVVTKIDLMDA 480
V+T + D + +KL KET VD + + +V+ DL+
Sbjct: 4 VITVSPDNTVKDVIKLIKETGHDGFPVVDNGKVVGIVSARDLLGK 48
>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins
[General function prediction only].
Length = 219
Score = 30.3 bits (68), Expect = 4.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 9 QIVVVGTQSSGKSSVIESLVGKSF 32
+IVV+G GK++++ LVG F
Sbjct: 7 KIVVLGDGGVGKTTLLNRLVGDEF 30
Score = 30.3 bits (68), Expect = 4.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 85 QIVVVGTQSSGKSSVIESLVGKSF 108
+IVV+G GK++++ LVG F
Sbjct: 7 KIVVLGDGGVGKTTLLNRLVGDEF 30
>gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase.
Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first
identified as part of the Human Cancer Genome Project.
It maps to chromosome 4q12 and is sometimes referred to
as Arfrp2 (Arf-related protein 2). This is a novel
subfamily identified in human cancers that is
uncharacterized to date.
Length = 164
Score = 29.3 bits (66), Expect = 5.5
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 9 QIVVVGTQSSGKSSVIESLVGK 30
QI+V+G +GK+S++ SL +
Sbjct: 1 QILVLGLDGAGKTSLLHSLSSE 22
Score = 29.3 bits (66), Expect = 5.5
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 85 QIVVVGTQSSGKSSVIESLVGK 106
QI+V+G +GK+S++ SL +
Sbjct: 1 QILVLGLDGAGKTSLLHSLSSE 22
>gnl|CDD|215057 PLN00105, PLN00105, malate/L-lactate dehydrogenase; Provisional.
Length = 330
Score = 30.2 bits (68), Expect = 6.4
Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 10/80 (12%)
Query: 14 GTQSSGKSSVIESLVGKSFLPRGIGIVTRRP-------LILQL--YYCPKDDREKRTAAA 64
G + SG + +E L G VT + L + + +DD EK AA
Sbjct: 215 GYKGSGLALTVELLAGALVGAAWGEDVTGKMSAKNWGHLFVAIDPKLLGQDDFEKN-AAE 273
Query: 65 VINKLQDVFNTVGTDAIQLP 84
V ++D G D I LP
Sbjct: 274 VTQAVKDSKKAPGVDEIWLP 293
>gnl|CDD|182123 PRK09866, PRK09866, hypothetical protein; Provisional.
Length = 741
Score = 30.2 bits (68), Expect = 7.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSFLP 34
+ +VGT +GKS+ I ++VG LP
Sbjct: 72 LAIVGTMKAGKSTTINAIVGTEVLP 96
Score = 30.2 bits (68), Expect = 7.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSFLP 110
+ +VGT +GKS+ I ++VG LP
Sbjct: 72 LAIVGTMKAGKSTTINAIVGTEVLP 96
>gnl|CDD|223296 COG0218, COG0218, Predicted GTPase [General function prediction
only].
Length = 200
Score = 29.1 bits (66), Expect = 7.9
Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 14/80 (17%)
Query: 317 IDLPG--ITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMATSES----LK 370
+DLPG KVP + + K+L+ Y+ ++ V+ + + ++
Sbjct: 75 VDLPGYGYAKVPKEVK-----EKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIE 129
Query: 371 LAKETDVDGRRTLAVVTKID 390
E + + V+TK D
Sbjct: 130 FLLELGIP---VIVVLTKAD 146
>gnl|CDD|153224 cd03130, GATase1_CobB, Type 1 glutamine amidotransferase (GATase1)
domain found in Cobyrinic Acid a,c-Diamide Synthase.
Type 1 glutamine amidotransferase (GATase1) domain found
in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a
role in cobalamin biosythesis catalyzing the conversion
of cobyrinic acid to cobyrinic acid a,c-diamide. CobB
belongs to the triad family of amidotransferases. Two
of the three residues of the catalytic triad that are
involved in glutamine binding, hydrolysis and transfer
of the resulting ammonia to the acceptor substrate in
other triad aminodotransferases are conserved in CobB.
Length = 198
Score = 29.1 bits (66), Expect = 8.0
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 512 DNKSIKDAIKDEAAFLQRKYPTLASRNGTLYLAKTL 547
N+S++++I+ AF + P A G +YL ++L
Sbjct: 60 ANQSMRESIR---AFAESGGPIYAECGGLMYLGESL 92
>gnl|CDD|206679 cd01892, Miro2, Mitochondrial Rho family 2 (Miro2), C-terminal.
Miro2 subfamily. Miro (mitochondrial Rho) proteins have
tandem GTP-binding domains separated by a linker region
containing putative calcium-binding EF hand motifs.
Genes encoding Miro-like proteins were found in several
eukaryotic organisms. This CD represents the putative
GTPase domain in the C terminus of Miro proteins. These
atypical Rho GTPases have roles in mitochondrial
homeostasis and apoptosis. Most Rho proteins contain a
lipid modification site at the C-terminus; however,
Miro is one of few Rho subfamilies that lack this
feature.
Length = 180
Score = 29.1 bits (66), Expect = 8.5
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 12 VVGTQSSGKSSVIESLVGKSFLPRGI 37
V+G + SGKS+++++ +G+SF
Sbjct: 9 VLGAKGSGKSALLQAFLGRSFSQNAY 34
Score = 29.1 bits (66), Expect = 8.5
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 88 VVGTQSSGKSSVIESLVGKSFLPRGI 113
V+G + SGKS+++++ +G+SF
Sbjct: 9 VLGAKGSGKSALLQAFLGRSFSQNAY 34
>gnl|CDD|227789 COG5502, COG5502, Uncharacterized conserved protein [Function
unknown].
Length = 135
Score = 28.5 bits (64), Expect = 8.7
Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 9/91 (9%)
Query: 625 ERIVEVVTQLLRRRLPATNTM-VENLLAIELAYINTKHPDFHKDAALVPSLIKSAEEDY- 682
RI V + LR RLP L +E+ I L P + + +D+
Sbjct: 29 YRITRAVLRTLRDRLPGEEAADFAAQLPMEIRDI------LVDGPDLGPPKLPFSLDDFL 82
Query: 683 QRRTLSEKEKRDCDVIERLIKSYFYIIRKSI 713
R + D E I + F ++++ I
Sbjct: 83 TRVANKFGLEPPVD-PEHAIAAVFAVLKRHI 112
>gnl|CDD|191103 pfam04821, TIMELESS, Timeless protein. The timeless gene in
Drosophila melanogaster and its homologues in a number
of other insects and mammals (including human) are
involved in circadian rhythm control. This family
includes a related proteins from a number of fungal
species.
Length = 266
Score = 29.5 bits (67), Expect = 8.8
Identities = 39/198 (19%), Positives = 70/198 (35%), Gaps = 57/198 (28%)
Query: 632 TQLLRRRLPATNTMVENLLAIELAYINTK-----HPDFHKDAALVPSLIKSAEEDYQRRT 686
+LL + P T ++ ++ A K ALV L+ S ++ R+
Sbjct: 74 VELLVGKEPKTVNGRRHIPELQEALQGYKEAFLDAKVLK---ALVRILLPSLAVPWEDRS 130
Query: 687 LSEKEKRDCDVIER---LIKSYFYI-----------IRKSIQDTVPKAI----MHFLVNY 728
+RD +IE L+++ +I S D A + L+
Sbjct: 131 -----ERDNLIIELILLLLRNILHIPPNPEAEKRGDEDASSHDATIWAFHQQGIDDLLLT 185
Query: 729 VKDNLQS--------ELVTHLYKADSASELLNES-------------EWVAQRRKEASDT 767
+ + E++ LYK +L N+S E + R++E++D
Sbjct: 186 LASSPDEEDFGVHILEIIFLLYKGQDPEKLFNDSEQRSLSEKSEDEEELTSLRKRESADK 245
Query: 768 KY-----PTLASRNGTLY 780
+ PT SR G +Y
Sbjct: 246 RPYAKNPPTRHSRFGGMY 263
>gnl|CDD|217779 pfam03885, DUF327, Protein of unknown function (DUF327). The
proteins in this family are around 140-170 residues in
length. The proteins contain many conserved residues.
with the most conserved motifs found in the central and
C-terminal region. The function of these proteins is
unknown.
Length = 146
Score = 28.7 bits (65), Expect = 9.6
Identities = 16/51 (31%), Positives = 19/51 (37%), Gaps = 12/51 (23%)
Query: 364 ATSESLKLAKETDVDGR---RTLAVVTKID---------LMDAGTDAIDIL 402
S KL K D R R +V ID L+D D +DIL
Sbjct: 81 VVKNSYKLEKSRSFDRRGRTRIYTIVKVIDEKLEELTEELLDEEKDNLDIL 131
Score = 28.7 bits (65), Expect = 9.6
Identities = 16/51 (31%), Positives = 19/51 (37%), Gaps = 12/51 (23%)
Query: 450 ATSESLKLAKETDVDGR---RTLAVVTKID---------LMDAGTDAIDIL 488
S KL K D R R +V ID L+D D +DIL
Sbjct: 81 VVKNSYKLEKSRSFDRRGRTRIYTIVKVIDEKLEELTEELLDEEKDNLDIL 131
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.135 0.379
Gapped
Lambda K H
0.267 0.0768 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 52,252,310
Number of extensions: 5308219
Number of successful extensions: 6286
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6265
Number of HSP's successfully gapped: 112
Length of query: 1036
Length of database: 10,937,602
Length adjustment: 107
Effective length of query: 929
Effective length of database: 6,191,724
Effective search space: 5752111596
Effective search space used: 5752111596
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (28.4 bits)