RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5059
(1036 letters)
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission,
GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A
{Rattus norvegicus} PDB: 3snh_A
Length = 772
Score = 299 bits (767), Expect = 2e-88
Identities = 146/636 (22%), Positives = 251/636 (39%), Gaps = 60/636 (9%)
Query: 409 VKLDVDGRRTYIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKETDVDGRRT 468
K+ V + IE QI+ +++ +++ N +ILAV AN+D+A S++LK+AKE D G+RT
Sbjct: 161 TKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRT 220
Query: 469 LAVVTKIDLMDAGTDAIDILCGRVIPVKLGIIGVVNRSQQDIIDNKSIKDAIKDEAAFL- 527
+ V+TK+DLMD GTDA D+L +++P++ G IGVVNRSQ+DI K I A+ E F
Sbjct: 221 IGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFL 280
Query: 528 -QRKYPTLASRNGTLYLAKTLNRLLMHHIRDCLPDLKTRVNVMISQFQTLLNSYGEDVSD 586
Y LA R GT YL K LN+ L +HIRD LP L+ ++ + + ++ Y D
Sbjct: 281 SHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVDEYKNFRPD 340
Query: 587 ----KSQTLLQIITKFASAYCSTVEENGIFKFIESKKNPALHERIVEVVTQLLRRRL--- 639
K++ LLQ++ +FA + +E G I++ + RI + + L
Sbjct: 341 DPARKTKALLQMVQQFAVDFEKRIE--GSGDQIDTYELS-GGARINRIFHERFPFELVKM 397
Query: 640 -PATNTMVENLLAIELAYINTKHPDFHKDAALVPSLIKSAEEDYQRRTLSEKEKRDCDVI 698
+ + + + F D A + +K Q + L E + D
Sbjct: 398 EFDEKELRREISYAIKNIHDIRTGLFTPDLAFE-ATVKK-----QVQKLKEPSIKCVD-- 449
Query: 699 ERLIKSYFYIIRKSIQDTVPKAIMHFLVNYVKDNLQSELVTHLYKADSASELLNESEWVA 758
++ + T+ K Y L+ E+ + + E E
Sbjct: 450 ---------MVVSELTSTIRKCSEKL-QQY--PRLREEME------RIVTTHIREREGRT 491
Query: 759 QRRKEASDTKYPTLASRNGTLYLAKTLNRLLMHHIRDCLPDLKTRVNVMISQFQTLLNSY 818
+ L + + ++ D N Q
Sbjct: 492 KE--------------------QVMLLIDIELAYMNTNHEDFIGFANAQQRSNQMNKKKT 531
Query: 819 GEDVSDKSQTLLQIITKFASAYCSTVEGTARNIETTELCGGARICYIFHEIFGKVLDGIN 878
+ + +T + T E + + + +D +
Sbjct: 532 SGNQDEILVIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLK 591
Query: 879 PLDGLTKMDILTAIRNATGPRPALFVPEVS-FELLVKRQIRRLEEPSQRCVELVHEEMQR 937
D I + EL + Q + V+ E
Sbjct: 592 LRDVEKGFMSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRAGVYPERVG 651
Query: 938 IIQHCEKEGNIPATTSSRTLSEKEKRDCDVIERLIKSYFYIIRKSIQDTVPKAIMHFLVN 997
+ + + + ++ + +R + I L+ SY I+ K+++D +PK IMH ++N
Sbjct: 652 DKEKASETEENGSDSFMHSMDPQLERQVETIRNLVDSYMAIVNKTVRDLMPKTIMHLMIN 711
Query: 998 YVKDNLQSELVTHLYKADSASELLNESEWVAQRRKE 1033
K+ + SEL+ +LY + L+ ES AQRR E
Sbjct: 712 NTKEFIFSELLANLYSCGDQNTLMEESAEQAQRRDE 747
Score = 223 bits (570), Expect = 2e-61
Identities = 112/259 (43%), Positives = 151/259 (58%), Gaps = 66/259 (25%)
Query: 65 VINKLQDVFNTVGTDA-IQLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLIL 123
++N+LQD F+ +G +A + LPQI VVG QS+GKSSV+E+ VG+ FLPRG GIVTRRPL+L
Sbjct: 32 LVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVL 91
Query: 124 QLYYCPKDDREKRTAAAGTMDLDAWGQFLHTKDKVFRDFDDIRREIEDETERLAGKNKGI 183
QL + + +FL
Sbjct: 92 QLVNSTTE----------------YAEFL------------------------------- 104
Query: 184 CTMDLDAWGQFLHTKDKVFRDFDDIRREIEDETERLAGKNKGICSEPIILKIYSTSVLNL 243
H K K F DF+++R EIE ET+R+ G NKGI PI L++YS VLNL
Sbjct: 105 ------------HCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNL 152
Query: 244 TLVDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKE 303
TLVDLPG+TKVPVGDQP DIE QI+ +++ +++ N +ILAV AN+D+A S++LK+AKE
Sbjct: 153 TLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKE 212
Query: 304 TDVDGRRTL------DLLD 316
D G+RT+ DL+D
Sbjct: 213 VDPQGQRTIGVITKLDLMD 231
Score = 146 bits (370), Expect = 3e-36
Identities = 66/210 (31%), Positives = 108/210 (51%), Gaps = 17/210 (8%)
Query: 218 RLAGKNKGICSEPIILKIYSTSVLNLTLVDLPGITKVPVGD-------------QPDDIE 264
G+N + I + ++ + L + G +P G
Sbjct: 41 SAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEY 100
Query: 265 AQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKET---DVDGRRTLDLLDIDLPG 321
A+ ++ + L + TD T + ++ V L+L +DLPG
Sbjct: 101 AEFLHCKGKKFTDFEEVRLEIEAE-TDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPG 159
Query: 322 ITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKETDVDGRR 381
+TKVPVGDQP DIE QI+ +++ +++ N +ILAV AN+D+A S++LK+AKE D G+R
Sbjct: 160 MTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQR 219
Query: 382 TLAVVTKIDLMDAGTDAIDILCGRVIPVKL 411
T+ V+TK+DLMD GTDA D+L +++P++
Sbjct: 220 TIGVITKLDLMDEGTDARDVLENKLLPLRR 249
Score = 74.5 bits (182), Expect = 1e-13
Identities = 34/57 (59%), Positives = 41/57 (71%)
Query: 3 DAIQLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDREK 59
+ LPQI VVG QS+GKSSV+E+ VG+ FLPRG GIVTRRPL+LQL + E
Sbjct: 47 ADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEF 103
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin,
fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A
{Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Length = 315
Score = 241 bits (617), Expect = 3e-72
Identities = 130/258 (50%), Positives = 164/258 (63%), Gaps = 57/258 (22%)
Query: 65 VINKLQDVFNTVGTDAIQLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQ 124
VINKLQDVFNT+G+D + LPQIVVVG+QSSGKSSV+E++VG+ FLPRG GIVTRRPLILQ
Sbjct: 6 VINKLQDVFNTLGSDPLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQ 65
Query: 125 LYYCPKDDREKRTAAAGTMDLDAWGQFLHTKDKVFRDFDDIRREIEDETERLAGKNKGIC 184
L + P D +T
Sbjct: 66 LTHLPIADDGSQT----------------------------------------------- 78
Query: 185 TMDLDAWGQFLHTKDKVFRDFDDIRREIEDETERLAGKNKGICSEPIILKIYSTSVLNLT 244
WG+FLH + +F DF +IR EI +T+R+ GKNKGI ++PI LKIYS V+NLT
Sbjct: 79 ----QEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLT 134
Query: 245 LVDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKET 304
LVDLPGITKVPVGDQP DIE QI+++V+ YI N+II+AV ANTD+A S++L+LAKE
Sbjct: 135 LVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV 194
Query: 305 DVDGRRTL------DLLD 316
D +G+RT+ DL+D
Sbjct: 195 DPEGKRTIGVITKLDLMD 212
Score = 214 bits (546), Expect = 2e-62
Identities = 93/174 (53%), Positives = 133/174 (76%), Gaps = 2/174 (1%)
Query: 409 VKLDVDGRRTYIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKETDVDGRRT 468
K+ V + T IE QI+++V+ YI N+II+AV ANTD+A S++L+LAKE D +G+RT
Sbjct: 142 TKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRT 201
Query: 469 LAVVTKIDLMDAGTDAIDILCGRVIPVKLGIIGVVNRSQQDIIDNKSIKDAIKDEAAFLQ 528
+ V+TK+DLMD GTDA+++L GRVIP+ LG IGV+NRSQ+DII KSI++++K E + +
Sbjct: 202 IGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFK 261
Query: 529 RK--YPTLASRNGTLYLAKTLNRLLMHHIRDCLPDLKTRVNVMISQFQTLLNSY 580
Y ++A+R+GT YL+KTLN+LLM HIRD LPDLK +V+ M+S Q L++Y
Sbjct: 262 NHPIYKSIANRSGTAYLSKTLNKLLMFHIRDTLPDLKVKVSKMLSDVQGELSTY 315
Score = 150 bits (381), Expect = 3e-40
Identities = 70/174 (40%), Positives = 104/174 (59%), Gaps = 8/174 (4%)
Query: 241 LNLTLVDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKL 300
L L L LP + + + + I ++ TD T ++ +
Sbjct: 62 LILQLTHLP----IADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIRD-TDRMTGKNKGI 116
Query: 301 AKET---DVDGRRTLDLLDIDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVV 357
+ + + ++L +DLPGITKVPVGDQP DIE QI+++V+ YI N+II+AV
Sbjct: 117 SAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVT 176
Query: 358 TANTDMATSESLKLAKETDVDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKL 411
ANTD+A S++L+LAKE D +G+RT+ V+TK+DLMD GTDA+++L GRVIP+ L
Sbjct: 177 PANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTL 230
Score = 78.0 bits (192), Expect = 2e-15
Identities = 44/98 (44%), Positives = 61/98 (62%), Gaps = 2/98 (2%)
Query: 1 GTDAIQLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDREKR 60
G+D + LPQIVVVG+QSSGKSSV+E++VG+ FLPRG GIVTRRPLILQL + P D +
Sbjct: 18 GSDPLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQ 77
Query: 61 TAAAVINKLQDVFNTVGTDAIQLPQIVVVGTQSSGKSS 98
T + N + D ++ + ++ T +
Sbjct: 78 TQE--WGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKN 113
Score = 62.9 bits (153), Expect = 1e-10
Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 4/77 (5%)
Query: 746 SASELLNESEWVAQRRKE----ASDTKYPTLASRNGTLYLAKTLNRLLMHHIRDCLPDLK 801
S +++ + + E + Y ++A+R+GT YL+KTLN+LLM HIRD LPDLK
Sbjct: 239 SQEDIIAKKSIRESLKSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLMFHIRDTLPDLK 298
Query: 802 TRVNVMISQFQTLLNSY 818
+V+ M+S Q L++Y
Sbjct: 299 VKVSKMLSDVQGELSTY 315
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like
protein 1A, GTPase, membrane fission, motor Pro; HET:
GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Length = 360
Score = 239 bits (611), Expect = 6e-71
Identities = 106/267 (39%), Positives = 136/267 (50%), Gaps = 71/267 (26%)
Query: 65 VINKLQDVFNTVGTDA---------IQLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGI 115
++NK+Q +G LP I VVG QSSGKSSV+ES+VGK FLPRG GI
Sbjct: 7 LVNKIQRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGI 66
Query: 116 VTRRPLILQLYYCPKDDREKRTAAAGTMDLDAWGQFLHTKDKVFRDFDDIRREIEDETER 175
VTRRPL+LQL RE + +F
Sbjct: 67 VTRRPLVLQLQKIDDGTRE-------------YAEF------------------------ 89
Query: 176 LAGKNKGICTMDLDAWGQFLHTKDKVFRDFDDIRREIEDETERLAGKNKGICSEPIILKI 235
LH K F DF +R+EI+DET+R G++K I S PI L I
Sbjct: 90 -------------------LHLPRKKFTDFAAVRKEIQDETDRETGRSKAISSVPIHLSI 130
Query: 236 YSTSVLNLTLVDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMATS 295
YS +V+NLTL+DLPG+TKV V Q D I I+ +V YI PN IILA+ AN D+ATS
Sbjct: 131 YSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATS 190
Query: 296 ESLKLAKETDVDGRRTL------DLLD 316
+++K+++E D G RT DL+D
Sbjct: 191 DAIKISREVDPSGDRTFGVLTKIDLMD 217
Score = 228 bits (583), Expect = 5e-67
Identities = 76/202 (37%), Positives = 117/202 (57%), Gaps = 3/202 (1%)
Query: 409 VKLDVDGRRTYIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKETDVDGRRT 468
K+ VDG+ I I+ +V YI PN IILA+ AN D+ATS+++K+++E D G RT
Sbjct: 147 TKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRT 206
Query: 469 LAVVTKIDLMDAGTDAIDILCGRVIPVKLGIIGVVNRSQQDIIDNKSIKDAIKDEAAFLQ 528
V+TKIDLMD GTDA++IL GR +K +GVVNRSQ DI N + A K E +
Sbjct: 207 FGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAARKREREYFS 266
Query: 529 R--KYPTLASRNGTLYLAKTLNRLLMHHIRDCLPDLKTRVNVMISQFQTLLNSYGEDV-S 585
+Y LA++ G+ +LAK L++ L I+ +P +++ +N + + +T L+ G+ +
Sbjct: 267 NTTEYRHLANKMGSEHLAKMLSKHLERVIKSRIPGIQSLINKTVLELETELSRLGKPIAH 326
Query: 586 DKSQTLLQIITKFASAYCSTVE 607
+ I + SA +E
Sbjct: 327 GTDSRVDPAIMERRSAISKRLE 348
Score = 153 bits (387), Expect = 1e-40
Identities = 52/107 (48%), Positives = 70/107 (65%)
Query: 305 DVDGRRTLDLLDIDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMA 364
+ ++L IDLPG+TKV V Q D I I+ +V YI PN IILA+ AN D+A
Sbjct: 129 SIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLA 188
Query: 365 TSESLKLAKETDVDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKL 411
TS+++K+++E D G RT V+TKIDLMD GTDA++IL GR +K
Sbjct: 189 TSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKY 235
Score = 83.4 bits (206), Expect = 3e-17
Identities = 24/106 (22%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Query: 746 SASELLNESEWVAQRRKE----ASDTKYPTLASRNGTLYLAKTLNRLLMHHIRDCLPDLK 801
S +++ + +A R++E ++ T+Y LA++ G+ +LAK L++ L I+ +P ++
Sbjct: 244 SQADINKNVDMIAARKREREYFSNTTEYRHLANKMGSEHLAKMLSKHLERVIKSRIPGIQ 303
Query: 802 TRVNVMISQFQTLLNSYGEDV-SDKSQTLLQIITKFASAYCSTVEG 846
+ +N + + +T L+ G+ + + I + SA +E
Sbjct: 304 SLINKTVLELETELSRLGKPIAHGTDSRVDPAIMERRSAISKRLEL 349
Score = 81.4 bits (201), Expect = 2e-16
Identities = 38/58 (65%), Positives = 41/58 (70%)
Query: 1 GTDAIQLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDRE 58
T LP I VVG QSSGKSSV+ES+VGK FLPRG GIVTRRPL+LQL RE
Sbjct: 28 PTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTRE 85
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle
protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
3l43_A*
Length = 299
Score = 220 bits (562), Expect = 6e-65
Identities = 112/259 (43%), Positives = 151/259 (58%), Gaps = 66/259 (25%)
Query: 65 VINKLQDVFNTVGTDA-IQLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLIL 123
++N+LQD F+ +G +A + LPQI VVG QS+GKSSV+E+ VG+ FLPRG GIVTRRPL+L
Sbjct: 7 LVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVL 66
Query: 124 QLYYCPKDDREKRTAAAGTMDLDAWGQFLHTKDKVFRDFDDIRREIEDETERLAGKNKGI 183
QL + + +FL
Sbjct: 67 QLVNSTTE----------------YAEFL------------------------------- 79
Query: 184 CTMDLDAWGQFLHTKDKVFRDFDDIRREIEDETERLAGKNKGICSEPIILKIYSTSVLNL 243
H K K F DF+++R EIE ET+R+ G NKGI PI L++YS VLNL
Sbjct: 80 ------------HCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNL 127
Query: 244 TLVDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKE 303
TLVDLPG+TKVPVGDQP DIE QI+ +++ +++ N +ILAV AN+D+A S++LK+AKE
Sbjct: 128 TLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKE 187
Query: 304 TDVDGRRTL------DLLD 316
D G+RT+ DL+D
Sbjct: 188 VDPQGQRTIGVITKLDLMD 206
Score = 198 bits (506), Expect = 2e-57
Identities = 74/164 (45%), Positives = 107/164 (65%), Gaps = 2/164 (1%)
Query: 409 VKLDVDGRRTYIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKETDVDGRRT 468
K+ V + IE QI+ +++ +++ N +ILAV AN+D+A S++LK+AKE D G+RT
Sbjct: 136 TKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRT 195
Query: 469 LAVVTKIDLMDAGTDAIDILCGRVIPVKLGIIGVVNRSQQDIIDNKSIKDAIKDEAAFLQ 528
+ V+TK+DLMD GTDA D+L +++P++ G IGVVNRSQ+DI K I A+ E F
Sbjct: 196 IGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFL 255
Query: 529 --RKYPTLASRNGTLYLAKTLNRLLMHHIRDCLPDLKTRVNVMI 570
Y LA R GT YL K LN+ L +HIRD LP L+ ++ +
Sbjct: 256 SHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQL 299
Score = 148 bits (375), Expect = 1e-39
Identities = 73/232 (31%), Positives = 118/232 (50%), Gaps = 28/232 (12%)
Query: 218 RLAGKNKGICSEPIILKIYSTSVLNLTLVDLPGITKVPVGDQPDDIEAQIKQL------- 270
G+N + I + ++ + L + G +P G + QL
Sbjct: 16 SAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEY 75
Query: 271 --VLHY----ISNPNSIILAVVTANTDMATSESLKLAKET---DVDGRRTLDLLDIDLPG 321
LH ++ + L + TD T + ++ V L+L +DLPG
Sbjct: 76 AEFLHCKGKKFTDFEEVRLEIEAE-TDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPG 134
Query: 322 ITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKETDVDGRR 381
+TKVPVGDQP DIE QI+ +++ +++ N +ILAV AN+D+A S++LK+AKE D G+R
Sbjct: 135 MTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQR 194
Query: 382 TLAVVTKIDLMDAGTDAIDILCGRVIPVKL-----------DVDGRRTYIEA 422
T+ V+TK+DLMD GTDA D+L +++P++ D+DG++ A
Sbjct: 195 TIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAA 246
Score = 71.4 bits (175), Expect = 2e-13
Identities = 34/57 (59%), Positives = 41/57 (71%)
Query: 3 DAIQLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDREK 59
+ LPQI VVG QS+GKSSV+E+ VG+ FLPRG GIVTRRPL+LQL + E
Sbjct: 22 ADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEF 78
Score = 58.0 bits (140), Expect = 5e-09
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 746 SASELLNESEWVAQRRKE----ASDTKYPTLASRNGTLYLAKTLNRLLMHHIRDCLPDLK 801
S ++ + + A E S Y LA R GT YL K LN+ L +HIRD LP L+
Sbjct: 233 SQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLR 292
Query: 802 TRVNVMI 808
++ +
Sbjct: 293 NKLQSQL 299
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission,
nucleotide-binding, endocytosis, motor protein; HET:
GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Length = 353
Score = 219 bits (558), Expect = 9e-64
Identities = 112/259 (43%), Positives = 151/259 (58%), Gaps = 66/259 (25%)
Query: 65 VINKLQDVFNTVGTDA-IQLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLIL 123
++N+LQD F+ +G +A + LPQI VVG QS+GKSSV+E+ VG+ FLPRG GIVTRRPL+L
Sbjct: 12 LVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVL 71
Query: 124 QLYYCPKDDREKRTAAAGTMDLDAWGQFLHTKDKVFRDFDDIRREIEDETERLAGKNKGI 183
QL + + +FL
Sbjct: 72 QLVNATTE----------------YAEFL------------------------------- 84
Query: 184 CTMDLDAWGQFLHTKDKVFRDFDDIRREIEDETERLAGKNKGICSEPIILKIYSTSVLNL 243
H K K F DF+++R EIE ET+R+ G NKGI PI L++YS VLNL
Sbjct: 85 ------------HCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNL 132
Query: 244 TLVDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKE 303
TLVDLPG+TKVPVGDQP DIE QI+ +++ +++ N +ILAV AN+D+A S++LK+AKE
Sbjct: 133 TLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKE 192
Query: 304 TDVDGRRTL------DLLD 316
D G+RT+ DL+D
Sbjct: 193 VDPQGQRTIGVITKLDLMD 211
Score = 217 bits (553), Expect = 5e-63
Identities = 82/212 (38%), Positives = 122/212 (57%), Gaps = 3/212 (1%)
Query: 409 VKLDVDGRRTYIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKETDVDGRRT 468
K+ V + IE QI+ +++ +++ N +ILAV AN+D+A S++LK+AKE D G+RT
Sbjct: 141 TKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRT 200
Query: 469 LAVVTKIDLMDAGTDAIDILCGRVIPVKLGIIGVVNRSQQDIIDNKSIKDAIKDEAAFLQ 528
+ V+TK+DLMD GTDA D+L +++P++ G IGVVNRSQ+DI K I A+ E F
Sbjct: 201 IGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFL 260
Query: 529 --RKYPTLASRNGTLYLAKTLNRLLMHHIRDCLPDLKTRVNVMISQFQTLLNSYGEDVSD 586
Y LA R GT YL K LN+ L +HIRD LP L+ ++ + + + Y D
Sbjct: 261 SHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVEEYKNFRPD 320
Query: 587 KSQTLLQIITKFASAYCSTVEENGIFKFIESK 618
K T + + + Y + E I I +
Sbjct: 321 KHGTDSR-VDEMLRMYHALKEALSIIGNINTT 351
Score = 148 bits (374), Expect = 4e-39
Identities = 73/232 (31%), Positives = 118/232 (50%), Gaps = 28/232 (12%)
Query: 218 RLAGKNKGICSEPIILKIYSTSVLNLTLVDLPGITKVPVGDQPDDIEAQIKQL------- 270
G+N + I + ++ + L + G +P G + QL
Sbjct: 21 SAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEY 80
Query: 271 --VLHY----ISNPNSIILAVVTANTDMATSESLKLAKET---DVDGRRTLDLLDIDLPG 321
LH ++ + L + TD T + ++ V L+L +DLPG
Sbjct: 81 AEFLHCKGKKFTDFEEVRLEIEAE-TDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPG 139
Query: 322 ITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKETDVDGRR 381
+TKVPVGDQP DIE QI+ +++ +++ N +ILAV AN+D+A S++LK+AKE D G+R
Sbjct: 140 MTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQR 199
Query: 382 TLAVVTKIDLMDAGTDAIDILCGRVIPVKL-----------DVDGRRTYIEA 422
T+ V+TK+DLMD GTDA D+L +++P++ D+DG++ A
Sbjct: 200 TIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAA 251
Score = 78.0 bits (192), Expect = 2e-15
Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 12/115 (10%)
Query: 746 SASELLNESEWVAQRRKE----ASDTKYPTLASRNGTLYLAKTLNRLLMHHIRDCLPDLK 801
S ++ + + A E S Y LA R GT YL K LN+ L +HIRD LP L+
Sbjct: 238 SQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLR 297
Query: 802 TRVNVMISQFQTLLNSYGEDVSDKSQTLLQI--------ITKFASAYCSTVEGTA 848
++ + + + Y DK T ++ K A + + T
Sbjct: 298 NKLQSQLLSIEKEVEEYKNFRPDKHGTDSRVDEMLRMYHALKEALSIIGNINTTT 352
Score = 70.7 bits (173), Expect = 5e-13
Identities = 34/57 (59%), Positives = 41/57 (71%)
Query: 3 DAIQLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDREK 59
+ LPQI VVG QS+GKSSV+E+ VG+ FLPRG GIVTRRPL+LQL + E
Sbjct: 27 ADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEF 83
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced
antiviral GTPase, membrane associated, PR binding; 3.50A
{Homo sapiens} PDB: 3zys_B
Length = 608
Score = 218 bits (556), Expect = 8e-61
Identities = 84/248 (33%), Positives = 120/248 (48%), Gaps = 57/248 (22%)
Query: 69 LQDVFNTVGTDA-IQLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYY 127
L D +G + + LP I V+G QSSGKSSV+E+L G + PRG GIVTR PL+L+L
Sbjct: 30 LIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVAL-PRGSGIVTRCPLVLKLKK 88
Query: 128 CPKDDREKRTAAAGTMDLDAWGQFLHTKDKVFRDFDDIRREIEDETERLAGKNKGICTMD 187
+D+ G+ +
Sbjct: 89 LVNEDKW-------------RGKVSY---------------------------------- 101
Query: 188 LDAWGQFLHTKDKVFRDFDDIRREIEDETERLAGKNKGICSEPIILKIYSTSVLNLTLVD 247
+ D ++ +EI +AG+ GI E I L+I S V +LTL+D
Sbjct: 102 --------QDYEIEISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLID 153
Query: 248 LPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKETDVD 307
LPGIT+V VG+QP DI +IK L+ YI +I L VV +N D+AT+E+L +A+E D +
Sbjct: 154 LPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPE 213
Query: 308 GRRTLDLL 315
G RT+ +L
Sbjct: 214 GDRTIGIL 221
Score = 213 bits (543), Expect = 5e-59
Identities = 77/392 (19%), Positives = 150/392 (38%), Gaps = 23/392 (5%)
Query: 409 VKLDVDGRRTYIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKETDVDGRRT 468
++ V + I +IK L+ YI +I L VV +N D+AT+E+L +A+E D +G RT
Sbjct: 158 TRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRT 217
Query: 469 LAVVTKIDLMDAGTDA--IDILCGRVIPVKLGIIGVVNRSQQDIIDNKSIKDAIKDEAAF 526
+ ++TK DL+D GT+ +D++ V +K G + V R QQ+I D S+ +A++ E F
Sbjct: 218 IGILTKPDLVDKGTEDKVVDVVRNLVFHLKKGYMIVKCRGQQEIQDQLSLSEALQREKIF 277
Query: 527 LQR----KYPTLASRNGTLYLAKTLNRLLMHHIRDCLPDLKTRVNVMISQFQTLLNSYG- 581
+ + + LA+ L L+ HI LP L+ ++ + L YG
Sbjct: 278 FENHPYFRDLLEEGKATVPCLAEKLTSELITHICKSLPLLENQIKETHQRITEELQKYGV 337
Query: 582 ---EDVSDKSQTLLQIITKFASAYCSTVEENGIFKFIESKKNPALHERIVEVVTQLLRRR 638
ED ++K L+ + F + ++ + + L + T +
Sbjct: 338 DIPEDENEKMFFLIDKVNAFNQDITALMQGEETVGEEDIRLFTRLRHEFHKWSTIIENNF 397
Query: 639 LPATNTMVENLLAIELAYINTKHPDFHKDAALVPSLIKSAEEDYQRRTLSEKEKRDCDVI 698
+ + E + P F +++K Q + L E +
Sbjct: 398 QEGHKILSRKIQKFENQAAAAELPGFVNYRTFE-TIVKQ-----QIKALEEPAVDMLHTV 451
Query: 699 ERLIKSYFYIIRKSIQDTVPKAIMHFLVNYVKDNLQSELVTHLYKADSASELLNESE--W 756
+++ F + + L K ++ + + L + E
Sbjct: 452 TDMVRLAFTDVSIKNFEEFFN-----LHRTAKSKIEDIRAEQEREGEKLIRLHFQMEQIV 506
Query: 757 VAQRRKEASDTKYPTLASRNGTLYLAKTLNRL 788
+ ++ ++ Y + R+
Sbjct: 507 YGAFQSSSATDSSMEEIFQHLMAYHQEASKRI 538
Score = 211 bits (539), Expect = 1e-58
Identities = 56/299 (18%), Positives = 102/299 (34%), Gaps = 40/299 (13%)
Query: 774 SRNGTLYLAKTLNRLLMHHIRDCLPDLKTRVNVMISQFQTLLNSYG----EDVSDKSQTL 829
+ LA+ L L+ HI LP L+ ++ + L YG ED ++K L
Sbjct: 291 GKATVPCLAEKLTSELITHICKSLPLLENQIKETHQRITEELQKYGVDIPEDENEKMFFL 350
Query: 830 LQIITKFASAYCSTVEGTARNIETTELCGGARICYIFHEIFGKVLDGINPLDGLTKMDIL 889
+ + F + ++G + ++ R+ + FH+ + + + I
Sbjct: 351 IDKVNAFNQDITALMQGE-ETVGEEDIRLFTRLRHEFHKWSTIIENNFQEGHKILSRKIQ 409
Query: 890 TAIRNATGPRPALFVPEVSFELLVKRQIRRLEEPSQRCVELVHEEMQRIIQHCE------ 943
A FV +FE +VK+QI+ LEEP+ + V + ++
Sbjct: 410 KFENQAAAAELPGFVNYRTFETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVSIKNFEE 469
Query: 944 ----------------KEGNIPATTSSRTLSEKEK-------------RDCDVIERLIKS 974
E R + E+ + I + + +
Sbjct: 470 FFNLHRTAKSKIEDIRAEQEREGEKLIRLHFQMEQIVYGAFQSSSATDSSMEEIFQHLMA 529
Query: 975 YFYIIRKSIQDTVPKAIMHFLVNYVKDNLQSELVTHLYKADSASELLNESEWVAQRRKE 1033
Y K I +P I F++ LQ ++ L D+ S LL E + +RK
Sbjct: 530 YHQEASKRISSHIPLIIQFFMLQTYGQQLQKAMLQLLQDKDTYSWLLKERSDTSDKRKF 588
Score = 139 bits (351), Expect = 2e-34
Identities = 49/124 (39%), Positives = 76/124 (61%), Gaps = 2/124 (1%)
Query: 305 DVDGRRTLDLLDIDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMA 364
++ R DL IDLPGIT+V VG+QP DI +IK L+ YI +I L VV +N D+A
Sbjct: 140 EISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA 199
Query: 365 TSESLKLAKETDVDGRRTLAVVTKIDLMDAGTDA--IDILCGRVIPVKLDVDGRRTYIEA 422
T+E+L +A+E D +G RT+ ++TK DL+D GT+ +D++ V +K + +
Sbjct: 200 TTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDVVRNLVFHLKKGYMIVKCRGQQ 259
Query: 423 QIKQ 426
+I+
Sbjct: 260 EIQD 263
Score = 74.3 bits (182), Expect = 1e-13
Identities = 29/57 (50%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 3 DAIQLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDREK 59
+ LP I V+G QSSGKSSV+E+L G + PRG GIVTR PL+L+L +D+ +
Sbjct: 41 QDLALPAIAVIGDQSSGKSSVLEALSGVAL-PRGSGIVTRCPLVLKLKKLVNEDKWR 96
>3ljb_A Interferon-induced GTP-binding protein MX1; four-helix-bundle,
antiviral protein; 2.40A {Homo sapiens}
Length = 271
Score = 132 bits (332), Expect = 2e-34
Identities = 44/270 (16%), Positives = 80/270 (29%), Gaps = 65/270 (24%)
Query: 820 EDVSDKSQTLLQIITKFASAYCSTVEGTARNIETTELCGGARICYIFHEIFGKVLDGINP 879
ED ++K L+ + F + ++G + ++ R+ + FH+ + +
Sbjct: 1 EDENEKMFFLIDKVNAFNQDITALMQGEE-TVGEEDIRLFTRLRHEFHKWSTIIENNFQE 59
Query: 880 LDGLTKMDILTAIRNATGPRPALFVPEVSFELLVKRQIRRLEEPSQRCVELV-------- 931
+ I G FV +FE +VK+QI+ LEEP+ + V
Sbjct: 60 GHKILSRKIQKFENQYRGRELPGFVNYRTFETIVKQQIKALEEPAVDMLHTVTDMVRLAF 119
Query: 932 --------------HEEMQRIIQHCEKEGNIPATTSSRTLSEKEKR-------------- 963
H + I+ E R + E+
Sbjct: 120 TDVSIKNFEEFFNLHRTAKSKIEDIRAEQEREGEKLIRLHFQMEQIVYCQDQVYRGALQK 179
Query: 964 ----------------------------DCDVIERLIKSYFYIIRKSIQDTVPKAIMHFL 995
+ I + + +Y K I +P I F+
Sbjct: 180 VREKELEEEKKKKSWDFGAFQSSSATDSSMEEIFQHLMAYHQEASKRISSHIPLIIQFFM 239
Query: 996 VNYVKDNLQSELVTHLYKADSASELLNESE 1025
+ LQ ++ L D+ S LL E
Sbjct: 240 LQTYGQQLQKAMLQLLQDKDTYSWLLKERS 269
Score = 85.4 bits (211), Expect = 2e-18
Identities = 28/188 (14%), Positives = 60/188 (31%), Gaps = 12/188 (6%)
Query: 573 FQTLLNSYGEDVSDKSQTLLQIITKFASAYCSTVEENGIFKFIESKKNPALHERIVEVVT 632
F+T++ + + + + +L +T + V +F LH +
Sbjct: 89 FETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVSIKNFEEF------FNLHRTAKSKIE 142
Query: 633 QLLRRRLPATNTMVENLLAIELAYINTKHPDFHKDAALVPSLIKSAEE-----DYQRRTL 687
+ + ++ +E + + + V E+ D+
Sbjct: 143 DIRAEQEREGEKLIRLHFQME-QIVYCQDQVYRGALQKVREKELEEEKKKKSWDFGAFQS 201
Query: 688 SEKEKRDCDVIERLIKSYFYIIRKSIQDTVPKAIMHFLVNYVKDNLQSELVTHLYKADSA 747
S + I + + +Y K I +P I F++ LQ ++ L D+
Sbjct: 202 SSATDSSMEEIFQHLMAYHQEASKRISSHIPLIIQFFMLQTYGQQLQKAMLQLLQDKDTY 261
Query: 748 SELLNESE 755
S LL E
Sbjct: 262 SWLLKERS 269
Score = 28.8 bits (64), Expect = 7.7
Identities = 5/26 (19%), Positives = 12/26 (46%)
Query: 582 EDVSDKSQTLLQIITKFASAYCSTVE 607
ED ++K L+ + F + ++
Sbjct: 1 EDENEKMFFLIDKVNAFNQDITALMQ 26
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 90.3 bits (223), Expect = 2e-18
Identities = 95/679 (13%), Positives = 203/679 (29%), Gaps = 157/679 (23%)
Query: 143 MDLDAWGQFLHTKD--KVF-----RDFDDIRREIEDETERLAGKNKGICTMDLDAWGQFL 195
MD + KD VF +FD ++++D + + + ++D
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFD--CKDVQDMPKSI------LSKEEIDHIIMSK 58
Query: 196 HTKDKVFRDFDDIRREIEDETER------------LAGKNKGICSEP-IILKIYSTSVLN 242
R F + + E+ ++ L K +P ++ ++Y +
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR-D 117
Query: 243 LTLVDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMA----TSESL 298
D K V + +++Q +L N +++ + T
Sbjct: 118 RLYNDNQVFAKYNV-SRLQPYL-KLRQALLELRPAKN-VLI------DGVLGSGKTW--- 165
Query: 299 KLAKETDVDGRRTLDLLDIDLPGITKVPVGDQPDDIEAQIKQLV-LHYISNPNSIILAVV 357
+A + + + + I + + + E ++ L L Y +PN +
Sbjct: 166 -VALDVCLSYKVQCKMDF----KIFWLNLK-NCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 358 TANTDMATSESLKLAKE---TDVDGRRTLAVVTKIDLMDAGT-DAIDILCGRVIPVKLDV 413
++N + S++ L V+ ++ +A +A ++ C
Sbjct: 220 SSNIKLRI-HSIQAELRRLLKSKPYENCLLVLL--NVQNAKAWNAFNLSC---------- 266
Query: 414 DGRRTYIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKETDVDGRRTLAVVT 473
+ + + KQ V ++S + +++ + + E L L
Sbjct: 267 ---KILLTTRFKQ-VTDFLSAATTTHISLDHHSMTLTPDEVKSL-----------LLKYL 311
Query: 474 KIDLMDAGTDAIDILCGRVIPVKLGIIGVVNRSQQDIIDNKSIKDAIKDEAAFLQRKYPT 533
D + + P +L II R DN +
Sbjct: 312 DCRPQDLPREVLTT-----NPRRLSIIAESIRDGLATWDN------------WKHVNCDK 354
Query: 534 LASRNGTLYLAKTLNRLLMHHIRDCLPDLKT-RVNVMISQFQTLLNSYGEDVSDKSQTLL 592
L + + +LN L R L + I L + + +
Sbjct: 355 LTT-----IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT-ILLSLIWFDVIKSDVM--- 405
Query: 593 QIITKFASAYCSTVEENG----------IFKF-IESKKNPALHERIVEVVTQLLRRRLPA 641
++ K S VE+ + ++ + ALH IV+ + +
Sbjct: 406 VVVNKLHKY--SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY-NIPKTFDS- 461
Query: 642 TNTMVENLLAIEL-AYINTKHPDFHKDAALVPSLIKSAEEDYQR-RTLSEKEKRDC---- 695
++L+ L Y H H P + + R L +K + D
Sbjct: 462 -----DDLIPPYLDQYF-YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWN 515
Query: 696 ------DVIERLIKSYFYIIRKSIQDTVP------KAIMHFLVNYVKDNLQSEL--VTHL 741
+ +++L K Y + I D P AI+ FL ++ + S+ + +
Sbjct: 516 ASGSILNTLQQL-KFY----KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI 570
Query: 742 YKADSASELLNESEWVAQR 760
+ E+ QR
Sbjct: 571 ALMAEDEAIFEEAHKQVQR 589
Score = 83.4 bits (205), Expect = 2e-16
Identities = 107/728 (14%), Positives = 205/728 (28%), Gaps = 234/728 (32%)
Query: 392 MDAGTDAIDILCGRVIPVKLDVDGRRTYIEAQIKQLVLHYISN-PNSIILAVVTANTDMA 450
MD T ++ V + +A + + + P SI+
Sbjct: 7 MDFETGEHQYQYKDILSV---------FEDAFVDNFDCKDVQDMPKSIL----------- 46
Query: 451 TSESLK--LAKETDVDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKLGIIGVVNRSQQ 508
+ E + + + V G L L Q+
Sbjct: 47 SKEEIDHIIMSKDAVSGTLRL---------------FWTLL---------------SKQE 76
Query: 509 DIIDNKSIKDAIKDEAAFLQRKY------PTLASRNGTLYLAKTLN-----------RL- 550
+++ K +++ ++ FL P++ +R + N RL
Sbjct: 77 EMVQ-KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135
Query: 551 LMHHIRDCLPDLKTRVNVMISQFQTLLNSYGEDVSDKSQTLLQIITKFASAYCSTVE--- 607
+R L +L+ NV+I G S K+ + A C + +
Sbjct: 136 PYLKLRQALLELRPAKNVLI---------DGVLGSGKT-WV-------ALDVCLSYKVQC 178
Query: 608 --ENGIF--KFIESKKNPALHERIVEVVTQLLRRRLPATNTMVENLLAIELAYINTKHPD 663
+ IF E ++E++ +LL + + N + N K
Sbjct: 179 KMDFKIFWLNLKNCNS----PETVLEMLQKLLYQ-------IDPNWTSRSDHSSNIKLR- 226
Query: 664 FHKDAALVPSLIKSAEEDYQRRTLSEKEKRDCDVIERLIKSYFYIIRKSIQDTV--PKAI 721
+ + RR L K +C L+ + V KA
Sbjct: 227 ------------IHSIQAELRRLLKSKPYENC-----LL----------VLLNVQNAKAW 259
Query: 722 MHFLVNYVKDNLQSE-LVTHLYK--ADSASELLNESEWVAQRRKEASDTKYPTLASRNGT 778
F NL + L+T +K D S A+ T + +L + T
Sbjct: 260 NAF-------NLSCKILLTTRFKQVTDFLS---------------AATTTHISLDHHSMT 297
Query: 779 LYLAKTLNRLL--MHHIRDCLPDLKTRVN-VMISQFQTLLNSYGEDVSDKSQTLLQIITK 835
L + + LL + LP N +S + D +
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI----RDGLATWDNWKHVNCD 353
Query: 836 FASAYCSTVEGTARNIETTELCGGARICY----IFHE---IFGKVLDGI-NPLDGLTKMD 887
+ +E + +E E R + +F I +L I + M
Sbjct: 354 ---KLTTIIESSLNVLEPAEY----RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV 406
Query: 888 ILTAIRNAT-----GPRPALFVPEVSFELLVKRQ---------IRRLEEPSQRCVE---L 930
++ + + + +P + EL VK + + P +
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466
Query: 931 VHEEM---QRIIQHCEKEGNIPATTSSRT-------LSEKEKRDC----------DVIER 970
+ + I H + + T R L +K + D + +++
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ 526
Query: 971 LIKSYFYIIRKSIQDTVP------KAIMHFLVNYVKDNLQSEL--VTHLYKADSASELLN 1022
L K Y + I D P AI+ FL ++ + S+ + + +
Sbjct: 527 L-KFY----KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFE 581
Query: 1023 ESEWVAQR 1030
E+ QR
Sbjct: 582 EAHKQVQR 589
Score = 71.4 bits (174), Expect = 1e-12
Identities = 66/438 (15%), Positives = 129/438 (29%), Gaps = 135/438 (30%)
Query: 707 YIIRKSIQDTVPKAIMHFLVNYVKDNLQ----SELVTHLYKADSASE--------LLNES 754
Y + + + +F V+D + E + H+ + A LL++
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ 75
Query: 755 EWVAQR-RKEASDTKYPTLASR----------NGTLYLAKTLNRL--------------- 788
E + Q+ +E Y L S +Y+ + +RL
Sbjct: 76 EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI-EQRDRLYNDNQVFAKYNVSRL 134
Query: 789 -LMHHIRDCLPDLKTRVNVMI------------------SQFQTLLN------SYGEDVS 823
+R L +L+ NV+I + Q ++ + S
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 824 DKS-----QTLLQIITKFASAYCSTVEGTARNIETTELCGGARICYIFHEIFGK----VL 874
++ Q LL I ++ I + + A + + + VL
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ----AELRRLLKSKPYENCLLVL 250
Query: 875 DG------INPLDGLTKMDILT-------AIRNATGPRPAL------FVPEVSFELLVKR 915
N + K+ + T + AT +L P+ LL+K
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 916 -QIRRLEEPSQRC----------VELVHEEMQRI--IQH--CEKEGNIPATTSSRTLSEK 960
R + P + E + + + +H C+K I +S L
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI-IESSLNVLEPA 369
Query: 961 EKRDCDVIERLIKSY--FYIIRKSIQDTVPKAIMHFLVNYVKDNLQSELVTHLYKADSAS 1018
E R + + S +P ++ + V + +V L+K
Sbjct: 370 EYRKM---------FDRLSVFPPSAH--IPTILLSLIWFDVIKSDVMVVVNKLHK----Y 414
Query: 1019 ELLNESEWVAQRRKESTV 1036
L+ ++ KEST+
Sbjct: 415 SLVE------KQPKESTI 426
Score = 55.2 bits (132), Expect = 1e-07
Identities = 75/528 (14%), Positives = 155/528 (29%), Gaps = 163/528 (30%)
Query: 29 GKSFLPRGIGIVTRRPLILQLYYCPKDDREKRTAAAVINKLQDVFNTVGTDAIQLPQIVV 88
+ F V+R L+L R A + +L+ +++
Sbjct: 123 NQVFAKYN---VSRLQPYLKL----------RQA---LLELRPA-----------KNVLI 155
Query: 89 VGTQSSGKSS-VIESLVGKSFLPRGIGIVTRRPL-I--LQLYYCPKDDREKRTAAAGTMD 144
G SGK+ ++ + + I L L C +
Sbjct: 156 DGVLGSGKTWVALDVC-------LSYKVQCKMDFKIFWLNLKNCNSPE----------TV 198
Query: 145 LDAWGQFLHTKDKVFRDFDD----IRREIEDETERL----AGKNKGICTMDLD------A 190
L+ + L+ D + D I+ I L K C + L A
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 191 WGQF-------LHTKDKVFRDF--DDIRREI----------EDETERLAGKNKGI----- 226
W F L T+ K DF I DE + L K
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318
Query: 227 ----CS-EPIILKIYSTSV----------LNLTLVDLPGITKVPVGDQ-PDDIEAQIKQL 270
+ P L I + S+ ++ L I + + P + +L
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 271 VLHYISNPNSII----LAVVTANTD-------MATSESLKLAKETDVDGRRTLDLLDIDL 319
+ P++ I L+++ + + L ++ + ++ + ++L
Sbjct: 379 S---VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435
Query: 320 PGITKVPVGDQPDDIEAQI-KQLVLHY----ISNPNSIILAVVT-----------ANTDM 363
+ E + + +V HY + + +I + N +
Sbjct: 436 ---------KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 486
Query: 364 ATSESLKLAKETDVDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKLDVDGRRTYI--- 420
E + L + +D R + KI +A G ++ + + YI
Sbjct: 487 P--ERMTLFRMVFLDFR---FLEQKIRHDSTAWNA----SGSILNTLQQLKFYKPYICDN 537
Query: 421 EAQIKQLV---LHYISNPNSIILAVVTANTDMATSESLKLAKETDVDG 465
+ + ++LV L ++ + + + TD+ L++A + +
Sbjct: 538 DPKYERLVNAILDFLPKIEENL--ICSKYTDL-----LRIALMAEDEA 578
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 69.3 bits (169), Expect = 6e-12
Identities = 104/599 (17%), Positives = 165/599 (27%), Gaps = 214/599 (35%)
Query: 21 SSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDREKRTAAAVINKLQDVFNTV---G 77
++ E LVGK FL G V+ + + V+N F G
Sbjct: 55 TTPAE-LVGK-FL----GYVSSL----------VEPSKVGQFDQVLNLCLTEFENCYLEG 98
Query: 78 TDAIQLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYC-------PK 130
D I +L L + + +++ Y P
Sbjct: 99 ND--------------------IHALAA-KLLQENDTTLVKTKELIKNYITARIMAKRPF 137
Query: 131 DDREK----RTAAAGTMDLDAW--GQFLHTKDKVF---RD-FDDIRREIEDETERLAGKN 180
D + R G L A GQ D F RD + + D + A
Sbjct: 138 DKKSNSALFRAVGEGNAQLVAIFGGQ--GNTDDYFEELRDLYQTYHVLVGDLIKFSAETL 195
Query: 181 KGICTMDLDAWGQFLHTKDKVFRDFDDIRREIEDETERLAGKNKGICSEPIILKIYSTSV 240
+ LDA +KVF +I +E+ + P
Sbjct: 196 SELIRTTLDA--------EKVFTQGLNILEWLENPSNT-----------P------DKDY 230
Query: 241 LNLTLVDLPGIT-----------KVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTAN 289
L + P I K+ +G P ++ + +K H ++ AV A
Sbjct: 231 LLSIPISCPLIGVIQLAHYVVTAKL-LGFTPGELRSYLKGATGH----SQGLVTAVAIAE 285
Query: 290 TDMATSES-LKLAKET------------DVDGRRTL--DLLDIDLPGITKVP------VG 328
TD + ES ++ + +L +L+ L VP
Sbjct: 286 TD--SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN 343
Query: 329 DQPDDIEAQIKQLVLH-------YISNPNSIILAVVTANTDMATSESL--------KLAK 373
+ ++ + + H IS N VV+ +SL K
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPP-----QSLYGLNLTLRKAKA 398
Query: 374 ETDVD------GRRTLAVVTK---I------DLMDAGTDAI--DILCGRV--------IP 408
+ +D R L + + L+ +D I D++ V IP
Sbjct: 399 PSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP 458
Query: 409 VKLDVDGR--RTYIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKETD---- 462
V DG R SI +V D +K T
Sbjct: 459 VYDTFDGSDLRVL---------------SGSISERIV----DCIIRLPVKWETTTQFKAT 499
Query: 463 --VD----GRRTLAVVTKIDLMDAGTDAIDILCG-RVIPVKLGIIGVVNRSQQDIIDNK 514
+D G L V+T + GT G RVI G ++ + D K
Sbjct: 500 HILDFGPGGASGLGVLTHRNK--DGT-------GVRVIVA-----GTLDINPDDDYGFK 544
Score = 68.9 bits (168), Expect = 8e-12
Identities = 84/582 (14%), Positives = 156/582 (26%), Gaps = 210/582 (36%)
Query: 544 AKTLNRLLMHH--IRDCLP---DLKTRVNVMISQFQTLL----NSYGEDVSDKSQTLLQI 594
A + L + H + L + + QF +L + D D+ T ++
Sbjct: 3 AYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAAD--DEPTTPAEL 60
Query: 595 ITKFASAYCSTVEENGIFKFIESKKNPALHERIVEVVTQLLRRRLPATNTMVENLLAIEL 654
+ KF ++ S P+ + +V+ L E
Sbjct: 61 VGKF-------------LGYVSSLVEPSKVGQFDQVLNLCLT--------------EFEN 93
Query: 655 AYINTKHPDFHKDAALVPSLIKSAEEDYQRRTLSEKEKRDCDVIERLIKSYFYIIRKSIQ 714
Y+ D H AL L++ + + + LIK+Y R +
Sbjct: 94 CYLEGN--DIH---ALAAKLLQENDTTLVKT-------------KELIKNY-ITARIMAK 134
Query: 715 DTVPKAIMHFLVNYVKDNL---------Q-------SELVTHLYKA---------DSASE 749
K L V + Q EL LY+ ++E
Sbjct: 135 RPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELR-DLYQTYHVLVGDLIKFSAE 193
Query: 750 LLNESEWVAQRRKEASDTKYPTLASRNGTLYLAKTLNRLLMHHIR--DCLPDLKTRVNVM 807
L+E R ++ + + LN ++ + PD +++
Sbjct: 194 TLSELI----RTTLDAEKVFT------------QGLN--ILEWLENPSNTPDKDYLLSIP 235
Query: 808 IS----------QFQTLLNSYG---EDVSDKSQTLL----QIITKFASAYCSTVEGTARN 850
IS + G ++ + ++T A A + E +
Sbjct: 236 ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVS 295
Query: 851 IETTELCGGARICYIF------HEIFGK-------VLDGIN-----P-----LDGLTKMD 887
+ I +F +E + + D + P + LT+
Sbjct: 296 VRKA-------ITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQ 348
Query: 888 ILTAIR--NATGPRP-----AL------FV---PEVSFELLVKRQIRRLEEP-------- 923
+ + N+ P +L V P S L +R+ + P
Sbjct: 349 VQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLN-LTLRKAKAPSGLDQSRI 407
Query: 924 --SQRCVELV----------HEE-----MQRIIQHCEKEG--------NIP--ATTSSRT 956
S+R ++ H I + K IP T
Sbjct: 408 PFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD 467
Query: 957 LSEKEKRDCDVIERLIKSYFYIIRKSI--QDTVPKAIMHFLV 996
L + ER++ IIR + + T H L
Sbjct: 468 LRVLSG---SISERIVDC---IIRLPVKWETTTQFKATHILD 503
Score = 35.4 bits (81), Expect = 0.13
Identities = 38/284 (13%), Positives = 76/284 (26%), Gaps = 106/284 (37%)
Query: 267 IKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKETDVDGR----RTLDLLDIDLPGI 322
I +V++ NP ++ + + ET VDG+ + ++
Sbjct: 1661 ILDIVIN---NPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSY 1717
Query: 323 TKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANT-------DMATSESLKLAKET 375
T + ++ A T T + A E LK +
Sbjct: 1718 T----------------------FRSEKGLLSA--TQFTQPALTLMEKAAFEDLK--SKG 1751
Query: 376 DVDGRRTL---------AVVTKIDLMDAGTDAIDILC--GRVIP--VKLDVDGRRTYIEA 422
+ T A+ + D+M ++++ G + V D GR Y
Sbjct: 1752 LIPADATFAGHSLGEYAALASLADVMSI-ESLVEVVFYRGMTMQVAVPRDELGRSNYGMI 1810
Query: 423 QIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKETDVDGRRTLAVVTKIDLMDAGT 482
I NP + +
Sbjct: 1811 AI---------NPGRVAASF--------------------------------------SQ 1823
Query: 483 DAIDILCGRVIPVKLGIIGVVN---RSQQDII--DNKSIKDAIK 521
+A+ + RV ++ +VN +QQ + D +++
Sbjct: 1824 EALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTN 1867
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 40.5 bits (94), Expect = 0.003
Identities = 31/180 (17%), Positives = 57/180 (31%), Gaps = 33/180 (18%)
Query: 68 KLQDVFNTVGTDAI--QLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIG--IVTRRPLIL 123
+ + DA P ++V G S+GK+S I+ L+ + +G T + +
Sbjct: 48 RFGSFHSPALEDADFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAV 107
Query: 124 QLYYCPKDDREKRTAAAGTMDLDAWGQF----------------LHTKDKVFRDFD--DI 165
+ T + +D F ++V D
Sbjct: 108 ------MHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRFMCAQLPNQVLESISIIDT 161
Query: 166 RREIEDETERLAGKNKGICTMDLDAWGQFLHTKDKVFRDFDDIRREIEDETERLAGKNKG 225
+ +R+ ++G + W F D + FD + EI DE G +G
Sbjct: 162 PGILSGAKQRV---SRGYDFPAVLRW--FAERVDLIILLFDAHKLEISDEFSEAIGALRG 216
Score = 39.0 bits (90), Expect = 0.008
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 6 QLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIG--IVTRRPLIL 47
P ++V G S+GK+S I+ L+ + +G T + +
Sbjct: 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAV 107
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 40.4 bits (93), Expect = 0.003
Identities = 11/41 (26%), Positives = 24/41 (58%)
Query: 8 PQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQ 48
+++V+G GKS+ + +L+G++ LP + T +L+
Sbjct: 70 FRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLR 110
Score = 40.4 bits (93), Expect = 0.003
Identities = 11/41 (26%), Positives = 24/41 (58%)
Query: 84 PQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQ 124
+++V+G GKS+ + +L+G++ LP + T +L+
Sbjct: 70 FRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLR 110
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.5 bits (83), Expect = 0.015
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
Query: 729 VKDNLQSELVTHLYKADSASEL-LNES 754
+K LQ+ L LY DSA L + +
Sbjct: 22 LK-KLQASL--KLYADDSAPALAIKAT 45
Score = 36.5 bits (83), Expect = 0.015
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
Query: 999 VKDNLQSELVTHLYKADSASEL-LNES 1024
+K LQ+ L LY DSA L + +
Sbjct: 22 LK-KLQASL--KLYADDSAPALAIKAT 45
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 32.8 bits (75), Expect = 0.62
Identities = 8/59 (13%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 552 MHHIRDCLPDLKTRVNVMISQFQTLLNSYGEDVSD-KSQTLLQIITKFASAYCSTVEEN 609
+ ++ L+ + M + ++ L + + D + + F + + V+EN
Sbjct: 254 VKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAVKEN 312
>1bol_A Protein (ribonuclease RH); ribonucleases, hydrolase; 2.00A
{Rhizopus niveus} SCOP: d.124.1.1
Length = 222
Score = 31.4 bits (70), Expect = 1.1
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 876 GINPLDGLTKMDILTAIRNATGPRPAL 902
GI P T ++ +AI + G + +
Sbjct: 154 GITPGGTYTATEMQSAIESYFGAKAKI 180
>3k3q_A Llama AA1 VHH domain; llama, VHH, antibody, BONT, cell junction,
cell membrane, cytoplasm, disulfide bond, hydrolase;
2.60A {Lama glama}
Length = 151
Score = 30.7 bits (70), Expect = 1.1
Identities = 8/26 (30%), Positives = 9/26 (34%)
Query: 125 LYYCPKDDREKRTAAAGTMDLDAWGQ 150
YYC D+ D WGQ
Sbjct: 107 SYYCAADEDVTPRVMGVIPHADHWGQ 132
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 32.0 bits (72), Expect = 1.2
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 8 PQIVVVGTQSSGKSSVIESLVGKSFLPRG 36
+ V G SGKSS I +L G G
Sbjct: 70 LNVAVTGETGSGKSSFINTLRGIGNEEEG 98
Score = 32.0 bits (72), Expect = 1.2
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 84 PQIVVVGTQSSGKSSVIESLVGKSFLPRG 112
+ V G SGKSS I +L G G
Sbjct: 70 LNVAVTGETGSGKSSFINTLRGIGNEEEG 98
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 30.9 bits (69), Expect = 1.5
Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 82 QLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDREKRTAAAG 141
+ I++ GT +GK+S+ E + + G + L+ + ++ + D E T
Sbjct: 9 KGINILITGTPGTGKTSMAEMIAAEL---DGFQHLEVGKLVKENHFYTEYDTELDTHIIE 65
Query: 142 TMDLDAWGQFL 152
D D F+
Sbjct: 66 EKDEDRLLDFM 76
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 31.6 bits (71), Expect = 1.5
Identities = 25/172 (14%), Positives = 57/172 (33%), Gaps = 20/172 (11%)
Query: 86 IVVVGTQSSGKSSVIESLVGK------SFLPRGIGIVT---RRPLILQLYYCPKDDREKR 136
++++G + GKSS+ + + +L + L + P
Sbjct: 2 VLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFSTLIDLAVMELPGQLNYFE 61
Query: 137 TAAAGTMDLDAWGQFLHTKDKVFRDFDDIRREIEDETERLAGKNKGICTMDLDAWGQFLH 196
+ + G ++ D + I + E N I +H
Sbjct: 62 PSYDSERLFKSVGALVYVIDSQDEYINAITN-LAMIIEYAYKVNPSINIE------VLIH 114
Query: 197 TKDKVFRDF-DDIRREIEDETERLAGKNKGICSEPIILKIYSTSVLNLTLVD 247
D + DF D +R+I +R + + + + + Y TS+ + ++ +
Sbjct: 115 KVDGLSEDFKVDAQRDI---MQRTGEELLELGLDGVQVSFYLTSIFDHSIYE 163
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease,
LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation,
GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo
sapiens} PDB: 3d6t_B*
Length = 184
Score = 30.4 bits (69), Expect = 2.1
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSFLPRGIGIVT 41
+++VG SGK+++++ L+ G+ T
Sbjct: 5 LMIVGNTGSGKTTLLQQLMKTKKSDLGMQSAT 36
Score = 30.4 bits (69), Expect = 2.1
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSFLPRGIGIVT 117
+++VG SGK+++++ L+ G+ T
Sbjct: 5 LMIVGNTGSGKTTLLQQLMKTKKSDLGMQSAT 36
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.1 bits (67), Expect = 2.6
Identities = 11/64 (17%), Positives = 32/64 (50%), Gaps = 13/64 (20%)
Query: 914 KRQIRRLEEPSQRCVELVHEEMQRII-----QHCEK-EGNIPATTSSRTLSEKE---KRD 964
+++++ L+ S+ + E+ ++ + + E+ E N ++R +++K + D
Sbjct: 95 RKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK---INNR-IADKAFYQQPD 150
Query: 965 CDVI 968
D+I
Sbjct: 151 ADII 154
>3hyk_A Holo-[acyl-carrier-protein] synthase; structural genomics, I
diseases; HET: MSE A3P; 2.31A {Bacillus anthracis}
Length = 122
Score = 29.0 bits (66), Expect = 2.9
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 14/54 (25%)
Query: 500 IGVVNRSQQDIIDNKSIKDAIKDEAAFLQR--------KYPTLASRNGTLYLAK 545
IG+ DII+ I+ + + F++R L T ++A
Sbjct: 8 IGI------DIIELNRIEKMLDGKLKFMERILTENERNVAKGLKGSRLTEFVAG 55
>2vyr_E Human single domain antibody; zinc, complex, nucleus, human MDM4,
immune system, zinc-finger, polymorphism, metal-binding;
2.00A {Homo sapiens} PDB: 1igm_H 2a9n_H* 2a9m_H
Length = 153
Score = 29.5 bits (67), Expect = 3.3
Identities = 8/26 (30%), Positives = 10/26 (38%), Gaps = 2/26 (7%)
Query: 125 LYYCPKDDREKRTAAAGTMDLDAWGQ 150
+YYC K + D WGQ
Sbjct: 93 VYYCAKPWYPFMASKGSEFDY--WGQ 116
>2opw_A Phyhd1 protein; double-stranded beta helix, oxygenase, structural
GE structural genomics consortium, SGC, oxidoreductase;
1.90A {Homo sapiens} PDB: 3obz_A*
Length = 291
Score = 29.7 bits (66), Expect = 4.3
Identities = 16/107 (14%), Positives = 29/107 (27%), Gaps = 1/107 (0%)
Query: 128 CPKDDREKRTAAAGTMDLDAWGQFLHTKDKVFRDFDDIRREIEDETERLAGKNKGICTMD 187
+ D + + + + D D IR E G
Sbjct: 40 VAEMDVPLHCRTEFSTQEEEQLRAQGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKS 99
Query: 188 LDAWGQFLHTKDKVFRDFDDIRREIEDETERLAGKNKGICSEPIILK 234
++ G LH D VF+ + ++ L + + I K
Sbjct: 100 INKIGHALHAHDPVFKSITHSFK-VQTLARSLGLQMPVVVQSMYIFK 145
>3k8t_A Ribonucleoside-diphosphate reductase large chain; eukaryotic
ribonucleotide reductase, nucleotide analogs, all enzyme
ATP-binding; HET: DGT 2A5; 2.10A {Saccharomyces
cerevisiae} PDB: 1zyz_A 2cvs_A 2cvt_A* 2cvu_A* 2cvv_A*
1zzd_A* 2cvw_A* 2cvy_A* 2eud_A* 2zlf_A 2zlg_A* 2cvx_A*
3paw_A 3s87_A* 3s8b_A* 3s8c_A* 3s8a_A* 3tb9_A* 3tba_A*
Length = 888
Score = 29.9 bits (67), Expect = 5.1
Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 9/110 (8%)
Query: 628 VEVVTQLLRRRLPATNTMVE--NLLAIELAYINTKHPDFHKDAA--LVPSLIKSAEEDYQ 683
VTQ + + T +E NL A AY+ T HPD+ AA + +L K + +
Sbjct: 36 AVKVTQRIISGVYEGVTTIELDNLAAETCAYMTTVHPDYATLAARIAISNLHKQTTKQFS 95
Query: 684 RRTLSEKEKRDC--DVIERLIKSYFYIIRKSIQDTVPKAIMH---FLVNY 728
+ + +I Y I +D + AI++ F +Y
Sbjct: 96 KVVEDLYRYVNAATGKPAPMISDDVYNIVMENKDKLNSAIVYDRDFQYSY 145
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD,
transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP:
c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Length = 252
Score = 29.4 bits (66), Expect = 5.2
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQL--YYCPKDDREKRTAAAGTM 143
I V G +SGKSSV +V + + ++ +IL +Y +K A G
Sbjct: 25 IGVSGGTASGKSSVCAKIV-QLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQF 83
Query: 144 DLD 146
+ D
Sbjct: 84 NFD 86
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown
function, PSI-2, protein struct initiative; 2.43A
{Pyrococcus furiosus dsm 3638}
Length = 369
Score = 29.7 bits (66), Expect = 5.4
Identities = 24/122 (19%), Positives = 41/122 (33%)
Query: 909 FELLVKRQIRRLEEPSQRCVELVHEEMQRIIQHCEKEGNIPATTSSRTLSEKEKRDCDVI 968
ELL KR+ EE ++ E + +E NI T LSE E + +
Sbjct: 104 AELLRKREEMPWEEFVEKFKAKAGEVAFALSDMVFRENNIFYPTLKALLSEGEWKAIKMQ 163
Query: 969 ERLIKSYFYIIRKSIQDTVPKAIMHFLVNYVKDNLQSELVTHLYKADSASELLNESEWVA 1028
E I Y + K + + +N + Q + + + L +
Sbjct: 164 EDEIGYYKVKPPEWDPGEDVKPLHPWEINPELNVEQLLTLPKEVQQALRGQPLEFDKTQL 223
Query: 1029 QR 1030
+R
Sbjct: 224 KR 225
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 29.4 bits (66), Expect = 5.6
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQL--YYCPKDDREKRTAAAGTM 143
I V G +SGKS+V E ++ + + R+ +IL +Y +K A G
Sbjct: 28 IGVSGGTASGKSTVCEKIM-ELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQY 86
Query: 144 DLD 146
+ D
Sbjct: 87 NFD 89
>1fth_A ACPS, acyl carrier protein synthase; bacterial fatty acid
biosynthesis, acyl carrier synthase, coenzyme A, X-RAY
crystallography; HET: A3P; 1.90A {Streptococcus
pneumoniae} SCOP: d.150.1.2 PDB: 1fte_A 1ftf_A*
Length = 122
Score = 28.2 bits (64), Expect = 5.9
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 14/54 (25%)
Query: 500 IGVVNRSQQDIIDNKSIKDAIKDEAAFLQR--------KYPTLASRNGTLYLAK 545
G+ DI + SI+ A+ F +R ++ +L R YLA
Sbjct: 7 HGI------DIEELASIESAVTRHEGFAKRVLTALEMERFTSLKGRRQIEYLAG 54
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB:
1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 29.3 bits (65), Expect = 6.2
Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 2/92 (2%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDREKRTAAAGTM-- 143
+V VGT SGK+++ + V + +L Y P D + M
Sbjct: 17 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMRE 76
Query: 144 DLDAWGQFLHTKDKVFRDFDDIRREIEDETER 175
G + + D++ F++ +I +
Sbjct: 77 GYGPNGAIVESYDRLMEKFNEYLNKILRLEKE 108
>1f7l_A Holo-(acyl carrier protein) synthase; 9-strand pseudo beta barrel
protein, COA complex protein, CO complex, transferase;
HET: COA; 1.50A {Bacillus subtilis} SCOP: d.150.1.2 PDB:
1f7t_A 1f80_A*
Length = 121
Score = 28.2 bits (64), Expect = 6.3
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 14/54 (25%)
Query: 500 IGVVNRSQQDIIDNKSIKDAIKDEAAFLQR--------KYPTLASRNGTLYLAK 545
IG+ DI + K I + F +R +Y L+ + +LA
Sbjct: 5 IGL------DITELKRIASMAGRQKRFAERILTRSELDQYYELSEKRKNEFLAG 52
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 29.0 bits (64), Expect = 8.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSFLP 34
++VVG GKS++I SL P
Sbjct: 21 LMVVGESGLGKSTLINSLFLTDLYP 45
Score = 29.0 bits (64), Expect = 8.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSFLP 110
++VVG GKS++I SL P
Sbjct: 21 LMVVGESGLGKSTLINSLFLTDLYP 45
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, serrs, translation, ATP-binding,
nucleotide-binding, structural genomics; HET: ATP; 1.95A
{Trypanosoma brucei} PDB: 3lsq_A*
Length = 484
Score = 29.2 bits (66), Expect = 8.2
Identities = 18/126 (14%), Positives = 32/126 (25%), Gaps = 27/126 (21%)
Query: 161 DFDDIRREIEDETERLAGKNKGICTMDLDAWGQFLHTKDKVFRDFDDIRREIEDETERL- 219
D R E R + + + D D + + D R + TE
Sbjct: 9 DIQLFRDETGANIIRESQRRRF---ADPDIVDAII--------EADKKWRRTQFLTEASK 57
Query: 220 ---------------AGKNKGICSEPIILKIYSTSVLNLTLVDLPGITKVPVGDQPDDIE 264
A + G SE + L + + + + D+
Sbjct: 58 KLINICSKAVGAKKKAKEADGDTSEIPPQVKEAYENGTLKGEQVEQLCVLQLKQLSKDLS 117
Query: 265 AQIKQL 270
Q+ L
Sbjct: 118 DQVAGL 123
>2f6m_B Vacuolar protein sorting-associated protein VPS28; endosomes,
trafficking complex, vacuole protei sorting, ESCRT
protein complexes; HET: DDQ; 2.10A {Saccharomyces
cerevisiae} SCOP: a.2.17.2 PDB: 2f66_B
Length = 109
Score = 27.6 bits (61), Expect = 9.0
Identities = 14/75 (18%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Query: 528 QRKYPTLASRNGTLY-LAKTLNRLLMHHIRDCLPDLK--TRVNVMISQFQTLLNSYGED- 583
+ TL+ +Y + TL+ + +++D + D + V+ ++ QF+ LNS ++
Sbjct: 25 KEVIETLS----EIYSIVITLDHVEKAYLKDSIDDTQYTNTVDKLLKQFKVYLNSQNKEE 80
Query: 584 VSDKSQTLLQIITKF 598
++ Q++ +
Sbjct: 81 INKHFQSIEAFADTY 95
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.379
Gapped
Lambda K H
0.267 0.0750 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 15,503,379
Number of extensions: 992817
Number of successful extensions: 2837
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2770
Number of HSP's successfully gapped: 131
Length of query: 1036
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 933
Effective length of database: 3,825,930
Effective search space: 3569592690
Effective search space used: 3569592690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.6 bits)