RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5059
(1036 letters)
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum
[TaxId: 44689]}
Length = 306
Score = 186 bits (473), Expect = 3e-53
Identities = 137/310 (44%), Positives = 182/310 (58%), Gaps = 61/310 (19%)
Query: 65 VINKLQDVFNTVGTDAIQLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQ 124
VINKLQDVFNT+G+D + LPQIVVVG+QSSGKSSV+E++VG+ FLPRG GIVTRRPLILQ
Sbjct: 6 VINKLQDVFNTLGSDPLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQ 65
Query: 125 LYYCPKDDREKRTAAAGTMDLDAWGQFLHTKDKVFRDFDDIRREIEDETERLAGKNKGIC 184
L + P D +T
Sbjct: 66 LTHLPIADDGSQTQ---------------------------------------------- 79
Query: 185 TMDLDAWGQFLHTKDKVFRDFDDIRREIEDETERLAGKNKGICSEPIILKIYSTSVLNLT 244
WG+FLH + +F DF +IR EI +T+R+ GKNKGI ++PI LKIYS V+NLT
Sbjct: 80 -----EWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLT 134
Query: 245 LVDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKET 304
LVDLPGITKVPVGDQP DIE QI+++V+ YI N+II+AV ANTD+A S++L+LAKE
Sbjct: 135 LVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV 194
Query: 305 DVDGRRTLDLLDIDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMA 364
D +G+RT+ + ITK+ D D ++ L I I + + D+
Sbjct: 195 DPEGKRTIGV-------ITKL---DLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDII 244
Query: 365 TSESLKLAKE 374
+S++ + +
Sbjct: 245 AKKSIRESLK 254
Score = 145 bits (367), Expect = 4e-39
Identities = 90/166 (54%), Positives = 128/166 (77%), Gaps = 2/166 (1%)
Query: 408 PVKLDVDGRRTYIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKETDVDGRR 467
K+ V + T IE QI+++V+ YI N+II+AV ANTD+A S++L+LAKE D +G+R
Sbjct: 141 ITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKR 200
Query: 468 TLAVVTKIDLMDAGTDAIDILCGRVIPVKLGIIGVVNRSQQDIIDNKSIKDAIKDEAAFL 527
T+ V+TK+DLMD GTDA+++L GRVIP+ LG IGV+NRSQ+DII KSI++++K E +
Sbjct: 201 TIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYF 260
Query: 528 QRK--YPTLASRNGTLYLAKTLNRLLMHHIRDCLPDLKTRVNVMIS 571
+ Y ++A+R+GT YL+KTLN+LLM HIRD LPDLK +V+ M+S
Sbjct: 261 KNHPIYKSIANRSGTAYLSKTLNKLLMFHIRDTLPDLKVKVSKMLS 306
Score = 93.3 bits (231), Expect = 3e-21
Identities = 63/119 (52%), Positives = 87/119 (73%)
Query: 306 VDGRRTLDLLDIDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMAT 365
+ ++L +DLPGITKVPVGDQP DIE QI+++V+ YI N+II+AV ANTD+A
Sbjct: 125 IYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLAN 184
Query: 366 SESLKLAKETDVDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKLDVDGRRTYIEAQI 424
S++L+LAKE D +G+RT+ V+TK+DLMD GTDA+++L GRVIP+ L G + I
Sbjct: 185 SDALQLAKEVDPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDI 243
Score = 82.6 bits (203), Expect = 1e-17
Identities = 41/61 (67%), Positives = 50/61 (81%)
Query: 1 GTDAIQLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDREKR 60
G+D + LPQIVVVG+QSSGKSSV+E++VG+ FLPRG GIVTRRPLILQL + P D +
Sbjct: 18 GSDPLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQ 77
Query: 61 T 61
T
Sbjct: 78 T 78
Score = 52.9 bits (126), Expect = 8e-08
Identities = 32/107 (29%), Positives = 54/107 (50%)
Query: 703 KSYFYIIRKSIQDTVPKAIMHFLVNYVKDNLQSELVTHLYKADSASELLNESEWVAQRRK 762
++ I + + D A+ + L V + + D ++ ++
Sbjct: 200 RTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILY 259
Query: 763 EASDTKYPTLASRNGTLYLAKTLNRLLMHHIRDCLPDLKTRVNVMIS 809
+ Y ++A+R+GT YL+KTLN+LLM HIRD LPDLK +V+ M+S
Sbjct: 260 FKNHPIYKSIANRSGTAYLSKTLNKLLMFHIRDTLPDLKVKVSKMLS 306
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 154 bits (389), Expect = 4e-42
Identities = 109/249 (43%), Positives = 147/249 (59%), Gaps = 60/249 (24%)
Query: 65 VINKLQDVFNTVGTDA-IQLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLIL 123
++N+LQD F+ +G +A + LPQI VVG QS+GKSSV+E+ VG+ FLPRG GIVTRRPL+L
Sbjct: 7 LVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVL 66
Query: 124 QLYYCPKDDREKRTAAAGTMDLDAWGQFLHTKDKVFRDFDDIRREIEDETERLAGKNKGI 183
QL + + +FLH K K
Sbjct: 67 QLVNSTTE----------------YAEFLHCKGK-------------------------- 84
Query: 184 CTMDLDAWGQFLHTKDKVFRDFDDIRREIEDETERLAGKNKGICSEPIILKIYSTSVLNL 243
F DF+++R EIE ET+R+ G NKGI PI L++YS VLNL
Sbjct: 85 -----------------KFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNL 127
Query: 244 TLVDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKE 303
TLVDLPG+TKVPVGDQP DIE QI+ +++ +++ N +ILAV AN+D+A S++LK+AKE
Sbjct: 128 TLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKE 187
Query: 304 TDVDGRRTL 312
D G+RT+
Sbjct: 188 VDPQGQRTI 196
Score = 132 bits (332), Expect = 1e-34
Identities = 75/172 (43%), Positives = 108/172 (62%), Gaps = 2/172 (1%)
Query: 401 ILCGRVIPVKLDVDGRRTYIEAQIKQLVLHYISNPNSIILAVVTANTDMATSESLKLAKE 460
L K+ V + IE QI+ +++ +++ N +ILAV AN+D+A S++LK+AKE
Sbjct: 128 TLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKE 187
Query: 461 TDVDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKLGIIGVVNRSQQDIIDNKSIKDAI 520
D G+RT+ V+TK+DLMD GTDA D+L +++P++ G IGVVNRSQ+DI K I A+
Sbjct: 188 VDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAAL 247
Query: 521 KDEAAFL--QRKYPTLASRNGTLYLAKTLNRLLMHHIRDCLPDLKTRVNVMI 570
E F Y LA R GT YL K LN+ L +HIRD LP L+ ++ +
Sbjct: 248 AAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQL 299
Score = 83.8 bits (206), Expect = 4e-18
Identities = 54/108 (50%), Positives = 80/108 (74%)
Query: 305 DVDGRRTLDLLDIDLPGITKVPVGDQPDDIEAQIKQLVLHYISNPNSIILAVVTANTDMA 364
V L+L +DLPG+TKVPVGDQP DIE QI+ +++ +++ N +ILAV AN+D+A
Sbjct: 118 RVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLA 177
Query: 365 TSESLKLAKETDVDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKLD 412
S++LK+AKE D G+RT+ V+TK+DLMD GTDA D+L +++P++
Sbjct: 178 NSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRG 225
Score = 72.6 bits (177), Expect = 3e-14
Identities = 34/55 (61%), Positives = 41/55 (74%)
Query: 5 IQLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDREK 59
+ LPQI VVG QS+GKSSV+E+ VG+ FLPRG GIVTRRPL+LQL + E
Sbjct: 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEF 78
Score = 49.5 bits (117), Expect = 8e-07
Identities = 27/106 (25%), Positives = 44/106 (41%)
Query: 703 KSYFYIIRKSIQDTVPKAIMHFLVNYVKDNLQSELVTHLYKADSASELLNESEWVAQRRK 762
++ I + + D A + V + + D + + A+R+
Sbjct: 194 RTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKF 253
Query: 763 EASDTKYPTLASRNGTLYLAKTLNRLLMHHIRDCLPDLKTRVNVMI 808
S Y LA R GT YL K LN+ L +HIRD LP L+ ++ +
Sbjct: 254 FLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQL 299
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 38.8 bits (89), Expect = 0.001
Identities = 22/151 (14%), Positives = 43/151 (28%), Gaps = 8/151 (5%)
Query: 84 PQIVVVGTQSSGKSSVIESLVGKSFLP-----RGIGIVTRRPLILQLYYCPKDDR-EKRT 137
P I++ G Q+SGK+S++ L S P + + L P + +
Sbjct: 4 PSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKL 63
Query: 138 AAAGTMDLDAWGQFLHTKDKV--FRDFDDIRREIEDETERLAGKNKGICTMDLDAWGQFL 195
+ + D + + D + + + L
Sbjct: 64 SDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL 123
Query: 196 HTKDKVFRDFDDIRREIEDETERLAGKNKGI 226
T + D + EI+ ER +
Sbjct: 124 FTARPPSKIKDALESEIQKVIERRKKSLNEV 154
Score = 31.1 bits (69), Expect = 0.43
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Query: 8 PQIVVVGTQSSGKSSVIESLVGKSFLP-----RGIGIVTRRPLILQLYYCPKDDREKR 60
P I++ G Q+SGK+S++ L S P + + L P + +
Sbjct: 4 PSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRY 61
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 33.8 bits (76), Expect = 0.056
Identities = 11/86 (12%), Positives = 21/86 (24%), Gaps = 5/86 (5%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDREKRTAAAGTMDL 145
++++G SGKS++++ + GI L +
Sbjct: 5 LLLLGAGESGKSTIVKQMKIIHEAGTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFE 64
Query: 146 DAWGQFLHTKDKVFRDFDDIRREIED 171
D ED
Sbjct: 65 GVTAIIF-----CVALSDYDLVLAED 85
Score = 29.9 bits (66), Expect = 1.2
Identities = 8/49 (16%), Positives = 18/49 (36%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDRE 58
++++G SGKS++++ + GI L +
Sbjct: 5 LLLLGAGESGKSTIVKQMKIIHEAGTGIVETHFTFKDLHFKMFDVGGQR 53
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 33.8 bits (76), Expect = 0.056
Identities = 25/162 (15%), Positives = 43/162 (26%), Gaps = 13/162 (8%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDREKRTAAAGTMDL 145
+V++G GK+S++ F + I + L +L K AG
Sbjct: 6 VVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERF 65
Query: 146 DAWGQFLHTKDKVFRDFDDIRREIEDETERLAGKNKGICTMDLDAWGQFLHTKDKVFRDF 205
A G + DI + + + + + D
Sbjct: 66 HALGPIYYRDSNGAILVYDI-----TDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL 120
Query: 206 DDIRREIEDETERLAGKNKGICSEPIILKIYSTSVLNLTLVD 247
+ R E E A K Y TS ++
Sbjct: 121 EKERHVSIQEAESYAESVG--------AKHYHTSAKQNKGIE 154
Score = 29.5 bits (65), Expect = 1.3
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSF 32
+V++G GK+S++ F
Sbjct: 6 VVLLGEGCVGKTSLVLRYCENKF 28
>d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex
aeolicus [TaxId: 63363]}
Length = 225
Score = 33.8 bits (77), Expect = 0.066
Identities = 24/172 (13%), Positives = 50/172 (29%), Gaps = 31/172 (18%)
Query: 389 IDLMDAGTDAIDILCGRVIPVKLDVDGRRTYIEAQIKQLVLHYISNPNSIILAVVTANTD 448
++ + G +DI V + + ++ ++K++ S + +I+ +
Sbjct: 77 VEAVRDGAQELDI----VWNLSAFKSEKYDFVVEELKEIFRETPSAVHKVIVET-PYLNE 131
Query: 449 MATSESLKLAKETDVDGRRTLAVVTKIDLMDAGTDAIDILCGRVIPVKL--GIIGVVNRS 506
+++++ E D +T I I VK GI
Sbjct: 132 EEIKKAVEICIEAGADFIKTSTGFAPRGTTLEEVRLIKSSAKGRIKVKASGGI------- 184
Query: 507 QQDIIDNKSIKDAIKDEAAFLQRKYPTL-ASRNGTLYLAKTLNRLLMHHIRD 557
+ ++ AI A R GT L H+
Sbjct: 185 -------RDLETAIS---------MIEAGADRIGTSSGISIAEEFLKRHLIL 220
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 33.5 bits (75), Expect = 0.077
Identities = 12/83 (14%), Positives = 28/83 (33%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDREKRTAAAGTMDL 145
++++G GK+S++ V K F + + L ++ + + AG
Sbjct: 5 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERF 64
Query: 146 DAWGQFLHTKDKVFRDFDDIRRE 168
+ G + D+
Sbjct: 65 QSLGVAFYRGADCCVLVFDVTAP 87
Score = 30.4 bits (67), Expect = 0.77
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSF 32
++++G GK+S++ V K F
Sbjct: 5 VIILGDSGVGKTSLMNQYVNKKF 27
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 33.1 bits (74), Expect = 0.078
Identities = 19/138 (13%), Positives = 44/138 (31%), Gaps = 5/138 (3%)
Query: 82 QLPQ--IVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDREKRTAA 139
++ Q +V++G + GKSS++ V F + L + + +
Sbjct: 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDT 62
Query: 140 AGTMDLDA-WGQFLHTKDKVFRDFDDIRREIEDETERLAGKNKGICTMD--LDAWGQFLH 196
AG + + +D E + + + + + + G
Sbjct: 63 AGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKAD 122
Query: 197 TKDKVFRDFDDIRREIED 214
+K DF + + +D
Sbjct: 123 LANKRAVDFQEAQSYADD 140
Score = 30.0 bits (66), Expect = 0.90
Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 6 QLPQ--IVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPK 54
++ Q +V++G + GKSS++ V F + L +
Sbjct: 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDT 53
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 32.8 bits (73), Expect = 0.13
Identities = 23/156 (14%), Positives = 46/156 (29%), Gaps = 7/156 (4%)
Query: 83 LPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDREKRTAAAGT 142
LP+I + G + GKSS I SL+ + + + +P Q + E
Sbjct: 23 LPEIALAGRSNVGKSSFINSLIN----RKNLARTSSKPGKTQTLNFYIINDELHFVDVPG 78
Query: 143 MDLDAWGQFLHTKDKVFRDFDDIRREIEDETERLAGKNKGICTMDLDAWGQFLHTKDKVF 202
+ + RE ++ D+ + + V
Sbjct: 79 YGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVI 138
Query: 203 RDF---DDIRREIEDETERLAGKNKGICSEPIILKI 235
D I + D+ ++ + I E ++
Sbjct: 139 VIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILF 174
Score = 29.3 bits (64), Expect = 1.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 7 LPQIVVVGTQSSGKSSVIESLVGKSFL 33
LP+I + G + GKSS I SL+ + L
Sbjct: 23 LPEIALAGRSNVGKSSFINSLINRKNL 49
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 32.3 bits (72), Expect = 0.17
Identities = 21/149 (14%), Positives = 50/149 (33%), Gaps = 1/149 (0%)
Query: 83 LPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDREKRTAAAGT 142
+ + +VG ++GKSS++ ++ T P L + +++R G
Sbjct: 1 IADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSP-NLGVVEVSEEERFTLADIPGI 59
Query: 143 MDLDAWGQFLHTKDKVFRDFDDIRREIEDETERLAGKNKGICTMDLDAWGQFLHTKDKVF 202
++ + G+ L + + + D + + + L V
Sbjct: 60 IEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVA 119
Query: 203 RDFDDIRREIEDETERLAGKNKGICSEPI 231
+ D+ E + A +G+ P+
Sbjct: 120 LNKVDLLEEEAVKALADALAREGLAVLPV 148
Score = 27.3 bits (59), Expect = 8.3
Identities = 8/40 (20%), Positives = 18/40 (45%)
Query: 7 LPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLI 46
+ + +VG ++GKSS++ ++ T P +
Sbjct: 1 IADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNL 40
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 31.9 bits (71), Expect = 0.20
Identities = 11/124 (8%), Positives = 33/124 (26%), Gaps = 4/124 (3%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLI----LQLYYCPKDDREKRTAAAG 141
I++VG ++GK++++ L + I + + ++K
Sbjct: 3 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR 62
Query: 142 TMDLDAWGQFLHTKDKVFRDFDDIRREIEDETERLAGKNKGICTMDLDAWGQFLHTKDKV 201
+ G ++ R E+ ++ + ++
Sbjct: 63 HYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEI 122
Query: 202 FRDF 205
Sbjct: 123 TDKL 126
Score = 28.5 bits (62), Expect = 2.9
Identities = 7/34 (20%), Positives = 16/34 (47%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRR 43
I++VG ++GK++++ L + I
Sbjct: 3 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV 36
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 31.8 bits (71), Expect = 0.21
Identities = 11/74 (14%), Positives = 22/74 (29%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDREKRTAAAGTMDL 145
++++G GKSS++ V F + + L L + AG
Sbjct: 9 VILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF 68
Query: 146 DAWGQFLHTKDKVF 159
+ +
Sbjct: 69 RSLRTPFYRGSDCC 82
Score = 29.2 bits (64), Expect = 1.7
Identities = 9/50 (18%), Positives = 18/50 (36%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDREK 59
++++G GKSS++ V F + + L L +
Sbjct: 9 VILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQ 58
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 31.9 bits (71), Expect = 0.21
Identities = 24/162 (14%), Positives = 47/162 (29%), Gaps = 10/162 (6%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDREKRTAAAGTMDL 145
+V++G + GKSS++ V F + L ++ + + AG
Sbjct: 6 LVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERF 65
Query: 146 DAWGQFLHTKDKVFRDFDDIRREIEDETERLAGKNKGICTMDLDAWGQFLHTKDKVFRDF 205
+ + + D+ + R K + D
Sbjct: 66 ASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKID--MLQE 123
Query: 206 DDIRREIEDETERLAGKNKGICSEPIILKIYSTSVLNLTLVD 247
R+ +E E+LA + L + TS V+
Sbjct: 124 GGERKVAREEGEKLAEEKG--------LLFFETSAKTGENVN 157
Score = 29.2 bits (64), Expect = 1.6
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSFLP 34
+V++G + GKSS++ V F
Sbjct: 6 LVLLGEAAVGKSSIVLRFVSNDFAE 30
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 31.9 bits (71), Expect = 0.24
Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 2/93 (2%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDREKRTAAAGTMDL 145
++ VG SGK+ + L+ + I + ++
Sbjct: 3 VLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 62
Query: 146 DAWGQFLHTKDKVFRDFD--DIRREIEDETERL 176
+F + V D +RE++D E L
Sbjct: 63 QLLDRFKSSARAVVFVVDSAAFQREVKDVAEFL 95
Score = 27.3 bits (59), Expect = 8.8
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSFLPRGIGIVT 41
++ VG SGK+ + L+ + I
Sbjct: 3 VLFVGLCDSGKTLLFVRLLTGQYRDTQTSITD 34
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 31.9 bits (71), Expect = 0.24
Identities = 19/107 (17%), Positives = 34/107 (31%), Gaps = 8/107 (7%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDREKRTAAAGTMDL 145
+V +G QS GK+S+I + SF + L +Y + R + AG
Sbjct: 3 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERF 62
Query: 146 DA--------WGQFLHTKDKVFRDFDDIRREIEDETERLAGKNKGIC 184
+ + D + + D+ G + I
Sbjct: 63 RSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIM 109
Score = 29.9 bits (66), Expect = 0.81
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSFLP 34
+V +G QS GK+S+I + SF
Sbjct: 3 LVFLGEQSVGKTSLITRFMYDSFDN 27
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 32.1 bits (72), Expect = 0.27
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 62 AAAVINKLQDVFNTVGTDAIQLPQIVVVGTQSSGKSSVIESLVGK 106
A A KL ++ + + + I+V+G GKSS + S++G+
Sbjct: 11 APATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGE 55
Score = 27.9 bits (61), Expect = 6.4
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 9 QIVVVGTQSSGKSSVIESLVGK 30
I+V+G GKSS + S++G+
Sbjct: 34 TILVMGKGGVGKSSTVNSIIGE 55
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 31.0 bits (69), Expect = 0.40
Identities = 14/91 (15%), Positives = 27/91 (29%), Gaps = 1/91 (1%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDREKRTAAAGTMDL 145
+++G GKS ++ K F P + + K + + AG
Sbjct: 6 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESF 65
Query: 146 DA-WGQFLHTKDKVFRDFDDIRREIEDETER 175
+ + +D RRE +
Sbjct: 66 RSITRSYYRGAAGALLVYDITRRETFNHLTS 96
Score = 29.8 bits (66), Expect = 1.1
Identities = 8/46 (17%), Positives = 15/46 (32%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKD 55
+++G GKS ++ K F P + + K
Sbjct: 6 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQ 51
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 31.3 bits (69), Expect = 0.45
Identities = 15/145 (10%), Positives = 37/145 (25%), Gaps = 11/145 (7%)
Query: 82 QLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQ-----------LYYCPK 130
++ G ++GKSS + +L + L R R LI L
Sbjct: 15 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGY 74
Query: 131 DDREKRTAAAGTMDLDAWGQFLHTKDKVFRDFDDIRREIEDETERLAGKNKGICTMDLDA 190
+ + L + + + + D + + + + + +
Sbjct: 75 AEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLL 134
Query: 191 WGQFLHTKDKVFRDFDDIRREIEDE 215
+ +R +
Sbjct: 135 TKADKLASGARKAQLNMVREAVLAF 159
Score = 27.4 bits (59), Expect = 7.1
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 6 QLPQIVVVGTQSSGKSSVIESLVG 29
++ G ++GKSS + +L
Sbjct: 15 TGIEVAFAGRSNAGKSSALNTLTN 38
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 30.8 bits (68), Expect = 0.50
Identities = 14/80 (17%), Positives = 24/80 (30%), Gaps = 1/80 (1%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDREKRTAAAGTMDL 145
+VVVG GKS++ + F+ Q + R AG +
Sbjct: 8 LVVVGGGGVGKSALTIQFIQSYFVTD-YDPTIEDSYTKQCVIDDRAARLDILDTAGQEEF 66
Query: 146 DAWGQFLHTKDKVFRDFDDI 165
A + + F +
Sbjct: 67 GAMREQYMRTGEGFLLVFSV 86
Score = 29.6 bits (65), Expect = 1.2
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSFLP 34
+VVVG GKS++ + F+
Sbjct: 8 LVVVGGGGVGKSALTIQFIQSYFVT 32
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 30.7 bits (68), Expect = 0.51
Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 1/90 (1%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDREKRTAAAGTMDL 145
+ ++G GKSS++ V SF P + + + Y + + AG
Sbjct: 7 VCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERF 66
Query: 146 DA-WGQFLHTKDKVFRDFDDIRREIEDETE 174
A + +D + E +
Sbjct: 67 RALAPMYYRGSAAAIIVYDITKEETFSTLK 96
Score = 29.6 bits (65), Expect = 1.3
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSFLP 34
+ ++G GKSS++ V SF P
Sbjct: 7 VCLLGDTGVGKSSIMWRFVEDSFDP 31
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 30.6 bits (68), Expect = 0.56
Identities = 9/58 (15%), Positives = 21/58 (36%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDREKRTAAAVIN 67
++ +G GK++ + F P+ I V ++ Y + A ++
Sbjct: 8 LLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65
Score = 30.2 bits (67), Expect = 0.85
Identities = 8/52 (15%), Positives = 18/52 (34%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDREKRT 137
++ +G GK++ + F P+ I V ++ Y +
Sbjct: 8 LLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSG 59
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 30.4 bits (67), Expect = 0.58
Identities = 18/82 (21%), Positives = 29/82 (35%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDREKRTAAAGTMDL 145
+VVVG + GKSS+I+ F + L Q+ +D R AG +
Sbjct: 5 MVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEF 64
Query: 146 DAWGQFLHTKDKVFRDFDDIRR 167
DA + + +
Sbjct: 65 DAITKAYYRGAQACVLVFSTTD 86
Score = 29.7 bits (65), Expect = 1.1
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSFLP 34
+VVVG + GKSS+I+ F
Sbjct: 5 MVVVGNGAVGKSSMIQRYCKGIFTK 29
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 30.6 bits (68), Expect = 0.62
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKD 55
I+++G S GK+S + SF P + V + +Y K
Sbjct: 8 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKR 53
Score = 30.6 bits (68), Expect = 0.62
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKD 131
I+++G S GK+S + SF P + V + +Y K
Sbjct: 8 ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKR 53
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 30.3 bits (67), Expect = 0.73
Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 1/88 (1%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDREKRTAAAGTMDL 145
+V+G +GKS ++ + K F + + K + + AG
Sbjct: 8 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF 67
Query: 146 DA-WGQFLHTKDKVFRDFDDIRREIEDE 172
+ + +D RE +
Sbjct: 68 RSVTRSYYRGAAGALLVYDITSRETYNA 95
Score = 28.7 bits (63), Expect = 2.2
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSF 32
+V+G +GKS ++ + K F
Sbjct: 8 FLVIGNAGTGKSCLLHQFIEKKF 30
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 30.4 bits (67), Expect = 0.76
Identities = 15/81 (18%), Positives = 26/81 (32%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDREKRTAAAGTMDL 145
I+ G + GKS++I L GK VTR+ + ++ D G
Sbjct: 3 IIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKE 62
Query: 146 DAWGQFLHTKDKVFRDFDDIR 166
+ + +I
Sbjct: 63 VQERIKDEIVHFIEDNAKNID 83
Score = 29.7 bits (65), Expect = 1.3
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDD 56
I+ G + GKS++I L GK VTR+ + ++ D
Sbjct: 3 IIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIID 49
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 31.3 bits (70), Expect = 0.79
Identities = 15/135 (11%), Positives = 46/135 (34%), Gaps = 11/135 (8%)
Query: 502 VVNRSQQDIIDNKSIKDAIKDEAAFLQRKYPTLASRNGTLYLAKTLNRLLMHHIRDCLPD 561
V + +I+ + + ++++ L A+ + ++ ++
Sbjct: 357 AVKTHIETVINALKTERDV-----SVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYS 411
Query: 562 LKTRVNVMISQFQTLLNSYGEDVSDKSQTLLQIITKFASAYCSTVEENGIFKFIESKKNP 621
++ + + + L Y D + T+L +I + A Y S + + +
Sbjct: 412 IREEI---VLKVAILAEKYAVDYTWYVDTILNLI-RIAGDYVSEEVWYRVIQIVI--NRD 465
Query: 622 ALHERIVEVVTQLLR 636
+ + V + L+
Sbjct: 466 DVQGYAAKTVFEALQ 480
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 30.0 bits (66), Expect = 0.81
Identities = 5/25 (20%), Positives = 13/25 (52%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSFLP 34
++++G GK+S++ V +
Sbjct: 5 VIILGDSGVGKTSLMHRYVNDKYSQ 29
Score = 30.0 bits (66), Expect = 0.81
Identities = 5/25 (20%), Positives = 13/25 (52%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSFLP 110
++++G GK+S++ V +
Sbjct: 5 VIILGDSGVGKTSLMHRYVNDKYSQ 29
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 30.1 bits (66), Expect = 0.86
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSF 32
I ++G +S GKSS+ V F
Sbjct: 7 IAILGYRSVGKSSLTIQFVEGQF 29
Score = 30.1 bits (66), Expect = 0.86
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSF 108
I ++G +S GKSS+ V F
Sbjct: 7 IAILGYRSVGKSSLTIQFVEGQF 29
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 29.9 bits (66), Expect = 0.90
Identities = 20/131 (15%), Positives = 43/131 (32%), Gaps = 9/131 (6%)
Query: 83 LPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRR--PLILQLYYCPKDDREKRTAAA 140
+P + +GK+++++ L+ + RGI + + + KD E R A
Sbjct: 2 IPLLAFAAWSGTGKTTLLKKLI-PALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAG- 59
Query: 141 GTMDLDAWGQFLHTKDKVFRDFDDIRREIEDETERLAGKNKGICTMDLDAWGQFLHTKDK 200
A + E++ + + + ++ + K
Sbjct: 60 -----AAQTIVASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIV 114
Query: 201 VFRDFDDIRRE 211
+FRD R E
Sbjct: 115 LFRDGAGHRPE 125
Score = 29.6 bits (65), Expect = 1.4
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 7 LPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRR--PLILQLYYCPKDDREKRTA 62
+P + +GK+++++ L+ + RGI + + + KD E R A
Sbjct: 2 IPLLAFAAWSGTGKTTLLKKLI-PALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKA 58
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 30.0 bits (66), Expect = 0.96
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSFLP 34
+ V G GKSS++ V +F
Sbjct: 5 VAVFGAGGVGKSSLVLRFVKGTFRE 29
Score = 30.0 bits (66), Expect = 0.96
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSFLP 110
+ V G GKSS++ V +F
Sbjct: 5 VAVFGAGGVGKSSLVLRFVKGTFRE 29
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 29.9 bits (66), Expect = 0.99
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSFLP 34
+VV+G+ GKS++ V +F+
Sbjct: 6 VVVLGSGGVGKSALTVQFVTGTFIE 30
Score = 29.9 bits (66), Expect = 0.99
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSFLP 110
+VV+G+ GKS++ V +F+
Sbjct: 6 VVVLGSGGVGKSALTVQFVTGTFIE 30
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 30.0 bits (66), Expect = 1.0
Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 1/80 (1%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDREKRTAAAGTMDL 145
+VVVG GKS++ L+ F+ + Q+ + AG +
Sbjct: 6 LVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEY 64
Query: 146 DAWGQFLHTKDKVFRDFDDI 165
A + F I
Sbjct: 65 SAMRDQYMRTGEGFLCVFAI 84
Score = 29.6 bits (65), Expect = 1.2
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSF 32
+VVVG GKS++ L+ F
Sbjct: 6 LVVVGAGGVGKSALTIQLIQNHF 28
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 30.0 bits (66), Expect = 1.1
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSFLP 34
+VVVG GKS++ + F+
Sbjct: 9 LVVVGGGGVGKSALTIQFIQSYFVS 33
Score = 30.0 bits (66), Expect = 1.1
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSFLP 110
+VVVG GKS++ + F+
Sbjct: 9 LVVVGGGGVGKSALTIQFIQSYFVS 33
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 29.6 bits (65), Expect = 1.1
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSFLP 34
+ + G GKS+++ + K F+
Sbjct: 5 LAIFGRAGVGKSALVVRFLTKRFIW 29
Score = 29.6 bits (65), Expect = 1.1
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSFLP 110
+ + G GKS+++ + K F+
Sbjct: 5 LAIFGRAGVGKSALVVRFLTKRFIW 29
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 29.6 bits (65), Expect = 1.1
Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 1/82 (1%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDREKRTAAAGTMDL 145
+VV+G+ GKS++ V F+ + + Q+ + + AGT
Sbjct: 6 LVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQF 64
Query: 146 DAWGQFLHTKDKVFRDFDDIRR 167
A + F I
Sbjct: 65 TAMRDLYMKNGQGFALVYSITA 86
Score = 29.2 bits (64), Expect = 1.5
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSFLP 34
+VV+G+ GKS++ V F+
Sbjct: 6 LVVLGSGGVGKSALTVQFVQGIFVE 30
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 29.9 bits (66), Expect = 1.2
Identities = 23/151 (15%), Positives = 41/151 (27%), Gaps = 2/151 (1%)
Query: 83 LPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDREKRTAAAGT 142
L + +VG S GKS+++ + T P L + G
Sbjct: 1 LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVP-NLGMVETDDGRSFVMADLPGL 59
Query: 143 MDLDAWGQFL-HTKDKVFRDFDDIRREIEDETERLAGKNKGICTMDLDAWGQFLHTKDKV 201
++ G L H + I I+ T++ + L ++
Sbjct: 60 IEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERP 119
Query: 202 FRDFDDIRREIEDETERLAGKNKGICSEPII 232
+ E A K K P+
Sbjct: 120 QIIVANKMDMPEAAENLEAFKEKLTDDYPVF 150
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 29.5 bits (65), Expect = 1.2
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSFLP 34
+++VG GK+ ++ +FL
Sbjct: 9 VMLVGDSGVGKTCLLVRFKDGAFLA 33
Score = 29.5 bits (65), Expect = 1.2
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSFLP 110
+++VG GK+ ++ +FL
Sbjct: 9 VMLVGDSGVGKTCLLVRFKDGAFLA 33
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 29.6 bits (65), Expect = 1.2
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSFLP 34
+V+VG +GK++ ++ + F
Sbjct: 6 LVLVGDGGTGKTTFVKRHLTGEFEK 30
Score = 29.6 bits (65), Expect = 1.2
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSFLP 110
+V+VG +GK++ ++ + F
Sbjct: 6 LVLVGDGGTGKTTFVKRHLTGEFEK 30
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 29.7 bits (66), Expect = 1.3
Identities = 14/95 (14%), Positives = 33/95 (34%), Gaps = 5/95 (5%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSFLPRGIGI----VTRRPLILQLYYCPKDDREKRTAAAG 141
++++G SGKS++++ + + GI + ++ E+R
Sbjct: 9 LLLLGAGESGKSTIVKQMRILHVVLT-SGIFETKFQVDKVNFHMFDVGGQRDERRKWIQC 67
Query: 142 TMDLDAWGQFLHTKDKVFRDFDDIRREIEDETERL 176
D+ A + + +D + E L
Sbjct: 68 FNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNL 102
Score = 27.4 bits (60), Expect = 7.0
Identities = 7/34 (20%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRR 43
++++G SGKS++++ + + GI +
Sbjct: 9 LLLLGAGESGKSTIVKQMRILHVVLT-SGIFETK 41
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top
tamarin (Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 29.5 bits (65), Expect = 1.3
Identities = 7/31 (22%), Positives = 18/31 (58%)
Query: 4 AIQLPQIVVVGTQSSGKSSVIESLVGKSFLP 34
++ L ++++VG+ GKS++ + F+
Sbjct: 1 SLALHKVIMVGSGGVGKSALTLQFMYDEFVE 31
Score = 29.5 bits (65), Expect = 1.3
Identities = 7/31 (22%), Positives = 18/31 (58%)
Query: 80 AIQLPQIVVVGTQSSGKSSVIESLVGKSFLP 110
++ L ++++VG+ GKS++ + F+
Sbjct: 1 SLALHKVIMVGSGGVGKSALTLQFMYDEFVE 31
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 29.6 bits (65), Expect = 1.3
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSFLP 34
I+V+G + GK+ + F
Sbjct: 5 IIVIGDSNVGKTCLTYRFCAGRFPD 29
Score = 29.6 bits (65), Expect = 1.3
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSFLP 110
I+V+G + GK+ + F
Sbjct: 5 IIVIGDSNVGKTCLTYRFCAGRFPD 29
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 29.8 bits (66), Expect = 1.3
Identities = 7/46 (15%), Positives = 17/46 (36%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKD 55
++++G GKS ++ ++ I + I + K
Sbjct: 9 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKT 54
Score = 29.8 bits (66), Expect = 1.3
Identities = 7/46 (15%), Positives = 17/46 (36%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKD 131
++++G GKS ++ ++ I + I + K
Sbjct: 9 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKT 54
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 29.3 bits (64), Expect = 1.5
Identities = 18/114 (15%), Positives = 38/114 (33%), Gaps = 6/114 (5%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSF------LPRGIGIVTRRPLILQLYYCPKDDREKRTAA 139
++++G ++GK+++++ G+ L I + R L ++ +
Sbjct: 5 LLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWR 64
Query: 140 AGTMDLDAWGQFLHTKDKVFRDFDDIRREIEDETERLAGKNKGICTMDLDAWGQ 193
D + + D+ + ERLAG I D G
Sbjct: 65 NYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA 118
Score = 28.9 bits (63), Expect = 2.0
Identities = 4/23 (17%), Positives = 16/23 (69%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSF 32
++++G ++GK+++++ G+
Sbjct: 5 LLMLGLDNAGKTTILKKFNGEDV 27
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 29.6 bits (65), Expect = 1.5
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSF 32
VVVG + GK+ ++ S +F
Sbjct: 8 CVVVGDGAVGKTCLLISYTTNAF 30
Score = 29.6 bits (65), Expect = 1.5
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSF 108
VVVG + GK+ ++ S +F
Sbjct: 8 CVVVGDGAVGKTCLLISYTTNAF 30
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 29.2 bits (64), Expect = 1.6
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSF 32
IVVVG GK++++ F
Sbjct: 5 IVVVGDSQCGKTALLHVFAKDCF 27
Score = 29.2 bits (64), Expect = 1.6
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSF 108
IVVVG GK++++ F
Sbjct: 5 IVVVGDSQCGKTALLHVFAKDCF 27
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 169
Score = 29.2 bits (64), Expect = 1.7
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSFLP 34
+VVVG GKS++ K F+P
Sbjct: 7 LVVVGDGGVGKSALTIQFFQKIFVP 31
Score = 29.2 bits (64), Expect = 1.7
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSFLP 110
+VVVG GKS++ K F+P
Sbjct: 7 LVVVGDGGVGKSALTIQFFQKIFVP 31
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 29.2 bits (64), Expect = 1.7
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSF 32
VVVG + GK+ ++ S +F
Sbjct: 12 CVVVGDGAVGKTCLLMSYANDAF 34
Score = 29.2 bits (64), Expect = 1.7
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSF 108
VVVG + GK+ ++ S +F
Sbjct: 12 CVVVGDGAVGKTCLLMSYANDAF 34
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 29.2 bits (64), Expect = 1.7
Identities = 17/150 (11%), Positives = 37/150 (24%), Gaps = 10/150 (6%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSFLPRGIGIV--------TRRPLILQLYYCPKDDREKRT 137
+V+VG + GK+ ++ F + V ++L E
Sbjct: 5 LVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYD 64
Query: 138 AAAGTMDLDAWGQFLHTKDKVFRDFDDIRREIEDETERLAGKNKGICTMDLDAWGQFLHT 197
D + ++I + E + I + HT
Sbjct: 65 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHT 124
Query: 198 KDKVFRDFDDIRREIEDETERLAGKNKGIC 227
+ + +E +A +
Sbjct: 125 RRE--LAKMKQEPVKPEEGRDMANRIGAFG 152
Score = 29.2 bits (64), Expect = 1.8
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSFLPRGIGIV 40
+V+VG + GK+ ++ F + V
Sbjct: 5 LVIVGDGACGKTCLLIVNSKDQFPEVYVPTV 35
>d1ow1a_ b.131.1.3 (A:) SMART/HDAC1 associated repressor protein,
SHARP {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 29.0 bits (65), Expect = 1.7
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 10/76 (13%)
Query: 522 DEAAFLQRKYPTLASRNGTLYLAKTLNRLLMHHI-------RDCLPDLKTRVNVMISQFQ 574
D L++ YP + G L L + +H + LP + + I+Q
Sbjct: 3 DMVQLLKK-YPIVW--QGLLALKNDTAAVQLHFVSGNNVLAHRSLPLSEGGPPLRIAQRM 59
Query: 575 TLLNSYGEDVSDKSQT 590
L + E V+ +
Sbjct: 60 RLEATQLEGVARRMTV 75
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 29.1 bits (64), Expect = 1.7
Identities = 9/63 (14%), Positives = 19/63 (30%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDREKRTAAAGTMDL 145
+V++G GKS+++ F + + K + + AG
Sbjct: 7 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERY 66
Query: 146 DAW 148
Sbjct: 67 RRI 69
Score = 28.7 bits (63), Expect = 2.9
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSFLP 34
+V++G GKS+++ F
Sbjct: 7 VVLIGDSGVGKSNLLSRFTRNEFNL 31
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 29.2 bits (64), Expect = 1.8
Identities = 34/198 (17%), Positives = 59/198 (29%), Gaps = 28/198 (14%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSFLPRGI-GIVTRRPLILQLYYCPKDDREKRTAAAGTMD 144
++ G GKS+ + L + I G + ++ + D D
Sbjct: 5 YIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITD 64
Query: 145 LDAWGQFLHTKDKVFRDFDDIRREIEDETERLAGKNKGICTMDLDAWGQFLHTKDKVFRD 204
L FL ++ V D+ E E + + K + L T +
Sbjct: 65 LTVN--FLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEI-----RFIILWTNREELLR 117
Query: 205 FDDIRREIEDETERLAGKNKGICSEPIILKIYSTSVLNLTLVDLPGITKVPVGDQPDDIE 264
D +R++ E ER + E I N + QP ++
Sbjct: 118 RDALRKKDEQMGERCLELVE----EFESKGIDERYFYNTS------------HLQPTNLN 161
Query: 265 AQIKQLVLHYISNPNSII 282
+K L +NP I
Sbjct: 162 DIVKNL----KTNPRFIF 175
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 29.3 bits (64), Expect = 1.8
Identities = 18/132 (13%), Positives = 40/132 (30%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDREKRTAAAGTMDL 145
+ +VG + GKS+++ +L+G P T R + + + +
Sbjct: 8 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM 67
Query: 146 DAWGQFLHTKDKVFRDFDDIRREIEDETERLAGKNKGICTMDLDAWGQFLHTKDKVFRDF 205
DA G+F+ + + + D +++ + G+ D
Sbjct: 68 DALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDA 127
Query: 206 DDIRREIEDETE 217
E
Sbjct: 128 AKYPEEAMKAYH 139
Score = 28.2 bits (61), Expect = 3.3
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 10 IVVVGTQSSGKSSVIESLVGK 30
+ +VG + GKS+++ +L+G
Sbjct: 8 VAIVGKPNVGKSTLLNNLLGV 28
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 29.2 bits (64), Expect = 1.8
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSFLP 34
VVVG + GK+ ++ S F
Sbjct: 6 CVVVGDGAVGKTCLLISYTTNKFPS 30
Score = 29.2 bits (64), Expect = 1.8
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSFLP 110
VVVG + GK+ ++ S F
Sbjct: 6 CVVVGDGAVGKTCLLISYTTNKFPS 30
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 29.0 bits (64), Expect = 1.9
Identities = 11/46 (23%), Positives = 18/46 (39%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKD 55
I+++G GKS ++ V F P I + I + K
Sbjct: 5 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKK 50
Score = 29.0 bits (64), Expect = 1.9
Identities = 11/46 (23%), Positives = 18/46 (39%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKD 131
I+++G GKS ++ V F P I + I + K
Sbjct: 5 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKK 50
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 29.2 bits (64), Expect = 1.9
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSF 32
+ V+G SGKSS+I + S+
Sbjct: 8 LGVLGDARSGKSSLIHRFLTGSY 30
Score = 29.2 bits (64), Expect = 1.9
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSF 108
+ V+G SGKSS+I + S+
Sbjct: 8 LGVLGDARSGKSSLIHRFLTGSY 30
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 28.9 bits (63), Expect = 1.9
Identities = 4/23 (17%), Positives = 13/23 (56%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSF 32
++ +G ++GK++++ L
Sbjct: 3 LLFLGLDNAGKTTLLHMLKNDRL 25
Score = 28.9 bits (63), Expect = 1.9
Identities = 4/23 (17%), Positives = 13/23 (56%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSF 108
++ +G ++GK++++ L
Sbjct: 3 LLFLGLDNAGKTTLLHMLKNDRL 25
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 29.0 bits (64), Expect = 2.0
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSFLP 34
IV++G GK+ ++ F P
Sbjct: 8 IVLIGNAGVGKTCLVRRFTQGLFPP 32
Score = 29.0 bits (64), Expect = 2.0
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSFLP 110
IV++G GK+ ++ F P
Sbjct: 8 IVLIGNAGVGKTCLVRRFTQGLFPP 32
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 29.2 bits (64), Expect = 2.1
Identities = 13/59 (22%), Positives = 21/59 (35%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDREKRTAAAGTMD 144
+V VGT SGK+++ + V + +L Y P D + M
Sbjct: 3 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMR 61
Score = 27.6 bits (60), Expect = 7.3
Identities = 12/51 (23%), Positives = 20/51 (39%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDREKR 60
+V VGT SGK+++ + V + +L Y P D +
Sbjct: 3 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREF 53
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 28.9 bits (63), Expect = 2.2
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSF 32
I+++G +GK++++ L
Sbjct: 8 ILILGLDGAGKTTILYRLQVGEV 30
Score = 28.9 bits (63), Expect = 2.2
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSF 108
I+++G +GK++++ L
Sbjct: 8 ILILGLDGAGKTTILYRLQVGEV 30
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 28.7 bits (63), Expect = 2.4
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 3 DAIQLPQIVVVGTQSSGKSSVIESLVGKSFLP 34
D + +I+++G GKSS++ +F P
Sbjct: 3 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDP 34
Score = 28.7 bits (63), Expect = 2.4
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 79 DAIQLPQIVVVGTQSSGKSSVIESLVGKSFLP 110
D + +I+++G GKSS++ +F P
Sbjct: 3 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDP 34
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 28.5 bits (62), Expect = 2.5
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSF 32
+ +VG Q SGK++ + + F
Sbjct: 5 LTLVGLQYSGKTTFVNVIASGQF 27
Score = 28.5 bits (62), Expect = 2.5
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSF 108
+ +VG Q SGK++ + + F
Sbjct: 5 LTLVGLQYSGKTTFVNVIASGQF 27
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 28.7 bits (63), Expect = 2.5
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSFLP 34
+++G GKS ++ K F+
Sbjct: 7 YIIIGDMGVGKSCLLHQFTEKKFMA 31
Score = 28.7 bits (63), Expect = 2.5
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSFLP 110
+++G GKS ++ K F+
Sbjct: 7 YIIIGDMGVGKSCLLHQFTEKKFMA 31
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 28.6 bits (62), Expect = 2.6
Identities = 21/133 (15%), Positives = 40/133 (30%), Gaps = 2/133 (1%)
Query: 85 QIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDREKRTAAAGTMD 144
++V+ G ++GKSS++ +L G+ T R ++ + + A
Sbjct: 3 KVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREA 62
Query: 145 LDAWGQFLHTKDKVFRDFDDIRREIEDETERLAGKNKGICTMDLDAWGQFLHTKDKVFRD 204
D + + + D + D T V R+
Sbjct: 63 SDEVERIGIERAWQEIEQADRVLFMVDGTTT--DAVDPAEIWPEFIARLPAKLPITVVRN 120
Query: 205 FDDIRREIEDETE 217
DI E +E
Sbjct: 121 KADITGETLGMSE 133
Score = 27.4 bits (59), Expect = 5.7
Identities = 8/22 (36%), Positives = 17/22 (77%)
Query: 9 QIVVVGTQSSGKSSVIESLVGK 30
++V+ G ++GKSS++ +L G+
Sbjct: 3 KVVIAGRPNAGKSSLLNALAGR 24
>d1ku1a_ a.118.3.1 (A:) ARF guanine-exchange factor 2, Gea2 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 211
Score = 28.7 bits (64), Expect = 2.9
Identities = 26/105 (24%), Positives = 39/105 (37%), Gaps = 6/105 (5%)
Query: 508 QDIIDNKSIK-DAIKDEAAFLQRKYPTLASRNGTLYLAKTLNRLLMHHIRDCLPDLKTRV 566
+I+ I D+ KD A FL + + L L L++ RV
Sbjct: 31 PMLIEKGFIASDSDKDIAEFLFNNNNRMNKKTIGLLLCHPDKVSLLNEYIRLFDFSGLRV 90
Query: 567 NVMISQFQTLLNSYGEDVSDKSQTLLQIITKFASAYCSTVEENGI 611
+ I T GE SQ + +II F+SAYC + +
Sbjct: 91 DEAIRILLTKFRLPGE-----SQQIERIIEAFSSAYCENQDYDPS 130
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 28.5 bits (62), Expect = 3.0
Identities = 13/135 (9%), Positives = 35/135 (25%), Gaps = 5/135 (3%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDREKRTAAAGTMDL 145
+ ++G +SSGKS ++ L + R + + + + +
Sbjct: 10 VAILGGESSGKSVLVNKL--AAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGH 67
Query: 146 DAWGQFLHTKDKVFRDFDDIRREIEDETERLAGKNKGI---CTMDLDAWGQFLHTKDKVF 202
+ + D + + GK + L + +
Sbjct: 68 QRYIDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEW 127
Query: 203 RDFDDIRREIEDETE 217
D + + +
Sbjct: 128 VDDGLRSLGSQKQRQ 142
Score = 27.7 bits (60), Expect = 6.3
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 10 IVVVGTQSSGKSSVIESL 27
+ ++G +SSGKS ++ L
Sbjct: 10 VAILGGESSGKSVLVNKL 27
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 28.6 bits (62), Expect = 3.1
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSF 32
+V++G Q GKS++ G
Sbjct: 6 VVLIGEQGVGKSTLANIFAGVHD 28
Score = 28.6 bits (62), Expect = 3.1
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSF 108
+V++G Q GKS++ G
Sbjct: 6 VVLIGEQGVGKSTLANIFAGVHD 28
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 28.1 bits (61), Expect = 3.6
Identities = 22/159 (13%), Positives = 48/159 (30%), Gaps = 6/159 (3%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDREKRTAAAGTMDL 145
+V +G ++GK++++ L + + A +
Sbjct: 16 LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRV-- 73
Query: 146 DAWGQFLHTKDKVFRDFDDIRREIEDETERLAGKNKGICTMDLDAWGQFLHTKDKVFRDF 205
W +L + + D E E++ T+ + D+
Sbjct: 74 --WKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAIS 131
Query: 206 DDIRREIEDETERLAGKNKGICSEPII--LKIYSTSVLN 242
++ RE+ + GK E L+++ SVL
Sbjct: 132 EERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLK 170
Score = 27.4 bits (59), Expect = 6.7
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSF 32
+V +G ++GK++++ L
Sbjct: 16 LVFLGLDNAGKTTLLHMLKDDRL 38
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 28.2 bits (61), Expect = 3.8
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSFLP 34
++++G GKS++ G P
Sbjct: 4 VLLLGAPGVGKSALARIFGGVEDGP 28
Score = 28.2 bits (61), Expect = 3.8
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSFLP 110
++++G GKS++ G P
Sbjct: 4 VLLLGAPGVGKSALARIFGGVEDGP 28
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 28.6 bits (63), Expect = 3.9
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 9 QIVVVGTQSSGKSSVIESLVGKSFLPRG 36
+ V G SGKSS I +L G G
Sbjct: 58 NVAVTGETGSGKSSFINTLRGIGNEEEG 85
Score = 28.6 bits (63), Expect = 3.9
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 85 QIVVVGTQSSGKSSVIESLVGKSFLPRG 112
+ V G SGKSS I +L G G
Sbjct: 58 NVAVTGETGSGKSSFINTLRGIGNEEEG 85
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 28.0 bits (61), Expect = 4.2
Identities = 26/189 (13%), Positives = 53/189 (28%), Gaps = 11/189 (5%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDREKRTAAAGTMDL 145
IV+ G +GKS++++ L + G + + E + +
Sbjct: 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTR--------TPRAGEVNGKDYNFVSV 55
Query: 146 DAWGQFLHTKDKVFRDFDDIRREIEDETERLAGKNKGICTMDLDAWGQFLHTKDKVFRDF 205
D + + + + G + Q + + +
Sbjct: 56 DEFKSMIKNNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDM-QGVKSVKAIPELN 114
Query: 206 DDIRREIEDETERLAGKNK--GICSEPIILKIYSTSVLNLTLVDLPGITKVPVGDQPDDI 263
E L + + G +E I K S + L + KV V D D
Sbjct: 115 ARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAELAYAETGAHDKVIVNDDLDKA 174
Query: 264 EAQIKQLVL 272
++K +
Sbjct: 175 YKELKDFIF 183
>d1ta8a_ d.142.2.2 (A:) Adenylation domain of NAD+-dependent DNA
ligase {Enterococcus faecalis [TaxId: 1351]}
Length = 313
Score = 28.4 bits (62), Expect = 4.3
Identities = 30/246 (12%), Positives = 60/246 (24%), Gaps = 8/246 (3%)
Query: 518 DAIKDEAAFLQRKYPTLASRNGTLYLAKTLNRLLMHHIRDCLPDLKTRVNVMISQFQTLL 577
D + E ++ ++P L + + +N S+
Sbjct: 39 DRLYKELVDIETEFPDLITPDSPTQRVGGKVLSGFEKAPH--DIPMYSLNDGFSKEDIFA 96
Query: 578 NSYGEDVSDKSQTLLQIITKFASAYCSTVEENGIFKFIESKKNPALHERIVEVVTQLLRR 637
+ K S ENG+F ++ + + E I E + R
Sbjct: 97 FDERVRKAIGKPVAYCCELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRT--VR 154
Query: 638 RLPATNTMVENLLAIELAYINTKHPDFHKDAALVPSLIKSAEEDYQRRTLSEKEKRDCDV 697
+P T ++ Y+ + + A R + R D
Sbjct: 155 SVPMRLTEPISVEVRGECYMPKQSFVALNEEREENGQDIFAN----PRNAAAGSLRQLDT 210
Query: 698 IERLIKSYFYIIRKSIQDTVPKAIMHFLVNYVKDNLQSELVTHLYKADSASELLNESEWV 757
++ + KA F + S E+ E
Sbjct: 211 KIVAKRNLNTFLYTVADFGPMKAKTQFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEY 270
Query: 758 AQRRKE 763
++R
Sbjct: 271 HEKRST 276
>d1v3ya_ d.167.1.1 (A:) Peptide deformylase {Thermus thermophilus
[TaxId: 274]}
Length = 182
Score = 27.8 bits (61), Expect = 5.1
Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 6/106 (5%)
Query: 152 LHTKDKVFRDFDDIRREIEDETERL-AGKNKGICTMDLDAWGQFLHTKDKVFRDFDDIRR 210
L K + DF I+R ED E + K G+ + + V ++ D
Sbjct: 13 LRRKARPVEDFSGIKRLAEDMLETMFEAKGVGLAAPQIGLSQRLF-----VAVEYADEPE 67
Query: 211 EIEDETERLAGKNKGICSEPIILKIYSTSVLNLTLVDLPGITKVPV 256
E+ R + + + P+I + LPG+ V
Sbjct: 68 GEEERPLRELVRRVYVVANPVITYREGLVEGTEGCLSLPGLYSEEV 113
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 27.4 bits (60), Expect = 5.7
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSF 32
++++G GK+ V+ +F
Sbjct: 9 LLLIGDSGVGKTCVLFRFSEDAF 31
Score = 27.4 bits (60), Expect = 5.7
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSF 108
++++G GK+ V+ +F
Sbjct: 9 LLLIGDSGVGKTCVLFRFSEDAF 31
>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide
phosphate guanylyltransferase CobU {Salmonella
typhimurium [TaxId: 90371]}
Length = 180
Score = 27.3 bits (60), Expect = 6.7
Identities = 27/120 (22%), Positives = 41/120 (34%), Gaps = 30/120 (25%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSFLPRGIGIVT-----------------RRPLILQLYYC 128
I+V G SGKS E+L+G + P+ + I T RP + C
Sbjct: 2 ILVTGGARSGKSRHAEALIGDA--PQVLYIATSQILDDEMAARIQHHKDGRPAHWRTAEC 59
Query: 129 PKDDREKRTAAAGTMD---LDAWGQFLH--------TKDKVFRDFDDIRREIEDETERLA 177
+ TA D L+ + D D+ + R I+DE + L
Sbjct: 60 WRHLDTLITADLAPDDAILLECITTMVTNLLFALGGENDPEQWDYAAMERAIDDEIQILI 119
>d2plca_ c.1.18.2 (A:) Phosphatidylinositol-specific phospholipase C
{Listeria monocytogenes [TaxId: 1639]}
Length = 274
Score = 27.5 bits (60), Expect = 7.4
Identities = 11/78 (14%), Positives = 23/78 (29%), Gaps = 4/78 (5%)
Query: 738 VTHLYKADSASELLNESEWVAQRRKEASDTKYPTLASRNGTL----YLAKTLNRLLMHHI 793
+ Y S E A + +A + + S A LN + +
Sbjct: 182 IQDDYNGPSVKTKFKEIVQTAYQASKADNKLFLNHISATSLTFTPRQYAAALNNKVEQFV 241
Query: 794 RDCLPDLKTRVNVMISQF 811
+ + + ++I F
Sbjct: 242 LNLTSEKVRGLGILIMDF 259
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 27.2 bits (59), Expect = 7.9
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSF 32
++++GT SGKS+ I+ +
Sbjct: 5 LLLLGTGESGKSTFIKQMRIIHG 27
Score = 27.2 bits (59), Expect = 7.9
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 86 IVVVGTQSSGKSSVIESLVGKSF 108
++++GT SGKS+ I+ +
Sbjct: 5 LLLLGTGESGKSTFIKQMRIIHG 27
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 27.0 bits (58), Expect = 8.5
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 10 IVVVGTQSSGKSSVIESLVGKS 31
+++VG + GKS++ LV K
Sbjct: 3 VLIVGRPNVGKSTLFNKLVKKK 24
Score = 27.0 bits (58), Expect = 8.5
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 86 IVVVGTQSSGKSSVIESLVGKS 107
+++VG + GKS++ LV K
Sbjct: 3 VLIVGRPNVGKSTLFNKLVKKK 24
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 27.2 bits (59), Expect = 8.6
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 4/72 (5%)
Query: 5 IQLPQIVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDREKRTAAA 64
+ LP I++ GT GK+++ + L K G+ + L + D E
Sbjct: 2 MLLPNILLTGTPGVGKTTLGKELASK----SGLKYINVGDLAREEQLYDGYDEEYDCPIL 57
Query: 65 VINKLQDVFNTV 76
+++ D +
Sbjct: 58 DEDRVVDELDNQ 69
>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding
protein 1 (GBP1), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 277
Score = 27.3 bits (60), Expect = 9.2
Identities = 10/62 (16%), Positives = 21/62 (33%)
Query: 10 IVVVGTQSSGKSSVIESLVGKSFLPRGIGIVTRRPLILQLYYCPKDDREKRTAAAVINKL 69
+ +VG +GKS ++ L GK V + ++ P + + +
Sbjct: 35 VAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEG 94
Query: 70 QD 71
Sbjct: 95 LG 96
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.379
Gapped
Lambda K H
0.267 0.0449 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,674,678
Number of extensions: 177131
Number of successful extensions: 839
Number of sequences better than 10.0: 1
Number of HSP's gapped: 829
Number of HSP's successfully gapped: 177
Length of query: 1036
Length of database: 2,407,596
Length adjustment: 95
Effective length of query: 941
Effective length of database: 1,103,246
Effective search space: 1038154486
Effective search space used: 1038154486
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.8 bits)