Query psy5060
Match_columns 145
No_of_seqs 123 out of 777
Neff 5.5
Searched_HMMs 29240
Date Sat Aug 17 00:44:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5060.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5060hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jtg_A THAP domain-containing 99.9 6.6E-24 2.3E-28 147.1 6.8 73 7-81 12-85 (87)
2 2d8r_A THAP domain-containing 99.9 1.5E-23 5.1E-28 149.2 8.2 76 7-84 19-94 (99)
3 2lau_A THAP domain-containing 99.8 2.8E-21 9.7E-26 132.2 5.9 61 7-77 14-81 (81)
4 3kde_C Transposable element P 99.7 4.4E-17 1.5E-21 112.0 6.0 62 12-76 11-76 (77)
5 2jm3_A Hypothetical protein; z 99.6 2E-16 6.8E-21 111.6 4.0 48 12-59 22-70 (91)
6 2h8b_B Insulin-like 3; insulin 12.7 42 0.0015 18.6 -0.1 18 42-59 4-21 (31)
7 2lul_A Tyrosine-protein kinase 7.5 3.2E+02 0.011 19.2 3.1 23 14-36 96-118 (164)
8 2e7v_A Transmembrane protease; 6.8 3.5E+02 0.012 18.9 2.9 27 15-42 74-102 (121)
9 3rcp_A Pleckstrin homology dom 6.6 4.4E+02 0.015 16.1 3.2 22 16-37 70-91 (103)
10 1jmu_A Protein MU-1; protein-p 6.3 71 0.0024 18.8 -0.9 13 68-80 25-37 (41)
No 1
>2jtg_A THAP domain-containing protein 1; zinc finger, CCCH, DNA-binding, metal-binding, zinc- finger, metal binding protein; NMR {Homo sapiens} PDB: 2ko0_A 2l1g_A*
Probab=99.89 E-value=6.6e-24 Score=147.13 Aligned_cols=73 Identities=37% Similarity=0.572 Sum_probs=65.0
Q ss_pred ccccCCCCcEEEeCC-CChHHHHHHHHHhhcCCCCcCCCceeccccCCcCccccccccCCcccCCCceecccCCCC
Q psy5060 7 NSLFWTSSTKFGRFP-EDKLRRKQWCIAMKRDKWKPSKHSKICSAHFTEDSFETNAWSERKKLSDTAVPSIFTFPD 81 (145)
Q Consensus 7 n~~~k~~~vsfhrFP-kD~~rr~kWi~~~~r~~~~p~k~~~VCS~HF~~~~f~~~~~~~r~~Lk~~AVPTIF~~~~ 81 (145)
|++.++.+++||+|| +|++++++|+++|++++|.+++.++|||+||+++||.. .+.+++|++|||||||+..+
T Consensus 12 n~~~~~~~~~f~~FP~kd~~~~~~W~~~~~~~~~~~~~~~~iCs~HF~~~~f~~--~~~~~~Lk~~AVPtif~~~~ 85 (87)
T 2jtg_A 12 NRYDKDKPVSFHKFPLTRPSLCKEWEAAVRRKNFKPTKYSSICSEHFTPDCFKR--ECNNKLLKENAVPTIFLELV 85 (87)
T ss_dssp CCCCSSSCCCEEECCSSCCTTHHHHHHHHCSSCCCTTTTSEEEGGGSCGGGGCC--CCSSCCCCTTCCCGGGCCCC
T ss_pred CCCcCCCCeEEEECCCCChHHHHHHHHHhCcccCccCCCCEEccccCcHhHhhc--cCCcCeeCCCCCCcCcCCCC
Confidence 444556789999999 99999999999999999999999999999999999997 24568999999999999654
No 2
>2d8r_A THAP domain-containing protein 2; NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.16
Probab=99.89 E-value=1.5e-23 Score=149.21 Aligned_cols=76 Identities=34% Similarity=0.660 Sum_probs=66.3
Q ss_pred ccccCCCCcEEEeCCCChHHHHHHHHHhhcCCCCcCCCceeccccCCcCccccccccCCcccCCCceecccCCCCCCC
Q psy5060 7 NSLFWTSSTKFGRFPEDKLRRKQWCIAMKRDKWKPSKHSKICSAHFTEDSFETNAWSERKKLSDTAVPSIFTFPDHLM 84 (145)
Q Consensus 7 n~~~k~~~vsfhrFPkD~~rr~kWi~~~~r~~~~p~k~~~VCS~HF~~~~f~~~~~~~r~~Lk~~AVPTIF~~~~~~~ 84 (145)
|++.++.+++||+||+|++++++|+++|++++|.++++++|||+||+++||.. .+.+++|++|||||||+.....+
T Consensus 19 n~~~~~~~~~ff~FPkd~~~~~~W~~~~~r~~~~~~~~~~ICs~HF~~~~f~~--~~~~~~Lk~~AVPtlf~~~~~~~ 94 (99)
T 2d8r_A 19 TTYNKHINISFHRFPLDPKRRKEWVRLVRRKNFVPGKHTFLCSKHFEASCFDL--TGQTRRLKMDAVPTIFDFCTHIS 94 (99)
T ss_dssp CSCCSSCCCCCEECCSSHHHHHHHHHHTTCTTCCCSSSCEECTTSSCSTTBSC--TTSSCCBCTTCCCSCCCCCCSSS
T ss_pred CCCcCCCCeEEEECCCCHHHHHHHHHHhCccccCCCCcceeeeeecchhhhhh--ccCccccCCCcCccCcCCcCccC
Confidence 44445789999999999999999999999999999999999999999999986 34568999999999997655444
No 3
>2lau_A THAP domain-containing protein 11; zinc finger, protein-DNA complex, DNA binding domain, transc factor, CCCH, transcription-DNA complex; NMR {Homo sapiens}
Probab=99.83 E-value=2.8e-21 Score=132.22 Aligned_cols=61 Identities=30% Similarity=0.610 Sum_probs=53.2
Q ss_pred ccccCCCCcEEEeCCCChHHHHHHHHHhhcC-------CCCcCCCceeccccCCcCccccccccCCcccCCCceeccc
Q psy5060 7 NSLFWTSSTKFGRFPEDKLRRKQWCIAMKRD-------KWKPSKHSKICSAHFTEDSFETNAWSERKKLSDTAVPSIF 77 (145)
Q Consensus 7 n~~~k~~~vsfhrFPkD~~rr~kWi~~~~r~-------~~~p~k~~~VCS~HF~~~~f~~~~~~~r~~Lk~~AVPTIF 77 (145)
|+..++.+|+||+||+|++++++|+++|++. +|.++++++|||+||+.+ ++|++|||||||
T Consensus 14 n~~~~~~~v~fh~FPkd~~~~~~Wl~~~~r~~~~~~~~~~~~~~~~rvCS~HF~~~----------~~L~~~aVPTiF 81 (81)
T 2lau_A 14 NNSHRDKALHFYTFPKDAELRRLWLKNVSRAGVSGCFSTFQPTTGHRLCSVHFQGG----------RKTYTVRVPTIF 81 (81)
T ss_dssp SCTTSCCCSCEECCCSSHHHHHHHHHHHCCSTTSSCCCTTCTTSCCCEEGGGSSSS----------SSBTTBCSCCCC
T ss_pred CCCCCCCCeEEEECCCCHHHHHHHHHHhCcccccccccccccCCCCEehhhhCCCC----------CccCCCCCCCcC
Confidence 5566678999999999999999999999984 457888999999999732 479999999998
No 4
>3kde_C Transposable element P transposase; THAP domain, DNA-binding domain, zinc-finger, beta-alpha-BET element transposase, DNA integration; HET: BRU; 1.74A {Drosophila melanogaster}
Probab=99.68 E-value=4.4e-17 Score=111.95 Aligned_cols=62 Identities=26% Similarity=0.522 Sum_probs=53.5
Q ss_pred CCCcEEEeCCCChHHHHHHHHHhhcCCCCcCCCceeccccCCcCcccccc----ccCCcccCCCceecc
Q psy5060 12 TSSTKFGRFPEDKLRRKQWCIAMKRDKWKPSKHSKICSAHFTEDSFETNA----WSERKKLSDTAVPSI 76 (145)
Q Consensus 12 ~~~vsfhrFPkD~~rr~kWi~~~~r~~~~p~k~~~VCS~HF~~~~f~~~~----~~~r~~Lk~~AVPTI 76 (145)
-.+|+||+||+|..+|++|.+.++.. ++.+++||+.||++++|.... ...+++|++|||||-
T Consensus 11 v~gvslfr~PK~~~~Rk~W~~~l~c~---lt~nSrIC~~HF~~Sd~~~~~~~~~~~krRrL~~~AiPt~ 76 (77)
T 3kde_C 11 VTGVKLIHVPKCAIKRKLWEQSLGCS---LGENSQICDTHFNDSQWKAAPAKGQTFKRRRLNADAVPSK 76 (77)
T ss_dssp CCSSCEEECCSSHHHHHHHHHHHTSC---CCTTCEEEGGGSCGGGBCCC--CCCCCSSCCBCTTCCCCC
T ss_pred cCCceEEECCCCHHHHHHHHHHcCCC---CCCcccHHHHhCCHHHheecccccccccceecCCCCCCCC
Confidence 36999999999999999999999874 778899999999999998631 114789999999983
No 5
>2jm3_A Hypothetical protein; zinc finger, domain, metal binding protein; NMR {Caenorhabditis elegans}
Probab=99.62 E-value=2e-16 Score=111.61 Aligned_cols=48 Identities=27% Similarity=0.512 Sum_probs=44.5
Q ss_pred CCCcEEEeCCCCh-HHHHHHHHHhhcCCCCcCCCceeccccCCcCcccc
Q psy5060 12 TSSTKFGRFPEDK-LRRKQWCIAMKRDKWKPSKHSKICSAHFTEDSFET 59 (145)
Q Consensus 12 ~~~vsfhrFPkD~-~rr~kWi~~~~r~~~~p~k~~~VCS~HF~~~~f~~ 59 (145)
+.+++||+||+|+ +++++|+++|+|++|.++.+++|||+||++++|..
T Consensus 22 ~~~~sFfrFPk~~~~~rk~Wl~ai~r~~~~~~~~~rICS~HF~~~~~~~ 70 (91)
T 2jm3_A 22 EDNRHFYRIPKRPLILRQRWLTAIGRTEETVVSQLRICSAHFEGGEKKE 70 (91)
T ss_dssp CTTCCCBCCCCSSHHHHHHHHHHHTCCGGGSSSSCCBCGGGSTTSCCSS
T ss_pred CCCceEEeCCCCCHHHHHHHHHHhCCCCCCCCCCcEEechhcCCCCccc
Confidence 6789999999887 99999999999999999999999999999998765
No 6
>2h8b_B Insulin-like 3; insulin/relaxin suparfamily fold, hormone/growth factor complex; NMR {Synthetic} PDB: 2k6t_B 2k6u_B
Probab=12.67 E-value=42 Score=18.58 Aligned_cols=18 Identities=22% Similarity=0.523 Sum_probs=12.8
Q ss_pred CCCceeccccCCcCcccc
Q psy5060 42 SKHSKICSAHFTEDSFET 59 (145)
Q Consensus 42 ~k~~~VCS~HF~~~~f~~ 59 (145)
....++|++||...-+.-
T Consensus 4 ~~~iklCGr~~vRa~I~v 21 (31)
T 2h8b_B 4 EMREKLCGHHFVRALVRV 21 (31)
T ss_dssp CCCBCCTTHHHHHHHHHH
T ss_pred hhhHHHhhHHHHHHHHHH
Confidence 356789999997665443
No 7
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}
Probab=7.49 E-value=3.2e+02 Score=19.17 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=17.7
Q ss_pred CcEEEeCCCChHHHHHHHHHhhc
Q psy5060 14 STKFGRFPEDKLRRKQWCIAMKR 36 (145)
Q Consensus 14 ~vsfhrFPkD~~rr~kWi~~~~r 36 (145)
+-+||=.-.+++-+..|+.+|+.
T Consensus 96 ~rt~~l~A~s~~e~~~Wi~aL~~ 118 (164)
T 2lul_A 96 ANTLYIFAPSPQSRDLWVKKLKE 118 (164)
T ss_dssp SCEEEEECSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCHHHHHHHHHHHHH
Confidence 34566566778888999999986
No 8
>2e7v_A Transmembrane protease; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.92A {Mus musculus}
Probab=6.81 E-value=3.5e+02 Score=18.91 Aligned_cols=27 Identities=15% Similarity=-0.018 Sum_probs=19.6
Q ss_pred cEEEeCCC--ChHHHHHHHHHhhcCCCCcC
Q psy5060 15 TKFGRFPE--DKLRRKQWCIAMKRDKWKPS 42 (145)
Q Consensus 15 vsfhrFPk--D~~rr~kWi~~~~r~~~~p~ 42 (145)
+-.|+||. +++.++++++++=+. +...
T Consensus 74 ~L~F~~p~t~~~~~~~~~i~~iL~q-L~~~ 102 (121)
T 2e7v_A 74 VMKFRSSKRNNRKVMKTRIQSVLRR-LSSS 102 (121)
T ss_dssp EEEEEC----CHHHHHHHHHHHHGG-GCSS
T ss_pred EEEEecCCcCChHHHHHHHHHHHHH-HhhC
Confidence 34799994 779999999998877 6533
No 9
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A
Probab=6.65 E-value=4.4e+02 Score=16.14 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=16.4
Q ss_pred EEEeCCCChHHHHHHHHHhhcC
Q psy5060 16 KFGRFPEDKLRRKQWCIAMKRD 37 (145)
Q Consensus 16 sfhrFPkD~~rr~kWi~~~~r~ 37 (145)
.|+=.-.+.+-+..|+.+++..
T Consensus 70 ~~~l~a~s~~e~~~Wi~al~~a 91 (103)
T 3rcp_A 70 HFYMKAVNAAERQRWLVALGSS 91 (103)
T ss_dssp EEEEECSSHHHHHHHHHHHHTT
T ss_pred EEEEECCCHHHHHHHHHHHHHH
Confidence 4444456778889999999975
No 10
>1jmu_A Protein MU-1; protein-protein complex, jelly roll, zinc finger, viral protein; HET: BOG; 2.80A {Reovirus SP} SCOP: e.35.1.1
Probab=6.35 E-value=71 Score=18.83 Aligned_cols=13 Identities=54% Similarity=0.590 Sum_probs=9.1
Q ss_pred cCCCceecccCCC
Q psy5060 68 LSDTAVPSIFTFP 80 (145)
Q Consensus 68 Lk~~AVPTIF~~~ 80 (145)
....|||+|-+.+
T Consensus 25 ~~ssA~P~l~L~p 37 (41)
T 1jmu_A 25 TSSTAVPSLSLSP 37 (41)
T ss_dssp GCCCCBCCCCCCH
T ss_pred cccccCcceecCc
Confidence 4557999986644
Done!