RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy5060
         (145 letters)



>gnl|CDD|218604 pfam05485, THAP, THAP domain.  The THAP domain is a putative
          DNA-binding domain (DBD) and probably also binds a zinc
          ion. It features the conserved C2CH architecture
          (consensus sequence: Cys - 2-4 residues - Cys - 35-50
          residues - Cys - 2 residues - His). Other universal
          features include the location of the domain at the
          N-termini of proteins, its size of about 90 residues, a
          C-terminal AVPTIF box and several other conserved
          residues. Orthologues of the human THAP domain have
          been identified in other vertebrates and probably worms
          and flies, but not in other eukaryotes or any
          prokaryotes.
          Length = 84

 Score = 64.7 bits (158), Expect = 9e-15
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 3/68 (4%)

Query: 16 KFGRFPEDKLRRKQWCIAMKRD-KWKPSKHSKICSAHFTEDSFETNAWSERKKLSDTAVP 74
           F RFP+D    ++W   + R+  WKP+K+S+ICS HF  D F+      R++L   AVP
Sbjct: 18 SFHRFPKDPELLRKWLKNLGREDDWKPTKNSRICSKHFEPDCFDNR--GGRRRLKPGAVP 75

Query: 75 SIFTFPDH 82
          ++F   D 
Sbjct: 76 TLFLGHDD 83


>gnl|CDD|214951 smart00980, THAP, The THAP domain is a putative DNA-binding
          domain (DBD) and probably also binds a zinc ion.  It
          features the conserved C2CH architecture (consensus
          sequence: Cys - 2-4 residues - Cys - 35-50 residues -
          Cys - 2 residues - His). Other universal features
          include the location of the domain at the N-termini of
          proteins, its size of about 90 residues, a C-terminal
          AVPTIF box and several other conserved residues.
          Orthologues of the human THAP domain have been
          identified in other vertebrates and probably worms and
          flies, but not in other eukaryotes or any prokaryotes.
          Length = 80

 Score = 59.8 bits (145), Expect = 7e-13
 Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 8/75 (10%)

Query: 7  NSLFWTSSTKFGRFP-EDKLRRKQWCIAMKRD---KWKPSKHSKICSAHFTEDSFETNAW 62
          N         F RFP ED   RK+W   +        KP K S+ICS HF  D F+ +  
Sbjct: 9  NRSKKNPGLSFFRFPKEDPELRKKWLENLGLPDDPNRKPKKRSRICSRHFEPDDFDNS-- 66

Query: 63 SERKKLSDTAVPSIF 77
             ++L   AVP++F
Sbjct: 67 --GRRLKPGAVPTLF 79


>gnl|CDD|128933 smart00692, DM3, Zinc finger domain in CG10631, C. elegans
          LIN-15B and human P52rIPK. 
          Length = 59

 Score = 45.8 bits (109), Expect = 1e-07
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 6/60 (10%)

Query: 19 RFPEDKLRRKQWCIAMK-RDKWKPSKHSKICSAHFTEDSFETNAWSERKKLSDTAVPSIF 77
          RFP+D    K+W   ++     K  K+S+ICS H     FE   + +R++L   AVP++ 
Sbjct: 3  RFPKDPELLKKWEHNLRLSPDEKKLKNSRICSRH-----FEPECFGKRRRLKPGAVPTLE 57


>gnl|CDD|177831 PLN02174, PLN02174, aldehyde dehydrogenase family 3 member H1.
          Length = 484

 Score = 27.7 bits (61), Expect = 2.2
 Identities = 8/19 (42%), Positives = 16/19 (84%)

Query: 1   MVQRKWNSLFWTSSTKFGR 19
           ++++KW+ +F+T S+K GR
Sbjct: 184 LLEQKWDKIFYTGSSKIGR 202


>gnl|CDD|180689 PRK06774, PRK06774, para-aminobenzoate synthase component II;
           Provisional.
          Length = 191

 Score = 27.5 bits (61), Expect = 2.5
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 44  HSKICSAHFTEDSFETNAWSER 65
           HS + +A      FE  AWSER
Sbjct: 128 HSLVIAADSLPGCFELTAWSER 149


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.322    0.131    0.443 

Gapped
Lambda     K      H
   0.267   0.0669    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,129,997
Number of extensions: 566435
Number of successful extensions: 358
Number of sequences better than 10.0: 1
Number of HSP's gapped: 352
Number of HSP's successfully gapped: 5
Length of query: 145
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 57
Effective length of database: 7,034,450
Effective search space: 400963650
Effective search space used: 400963650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (24.7 bits)