RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5060
(145 letters)
>2d8r_A THAP domain-containing protein 2; NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.39.1.16
Length = 99
Score = 66.6 bits (162), Expect = 2e-15
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 7 NSLFWTSSTKFGRFPEDKLRRKQWCIAMKRDKWKPSKHSKICSAHFTEDSFETNAWSERK 66
+ + F RFP D RRK+W ++R + P KH+ +CS HF F+ + +
Sbjct: 19 TTYNKHINISFHRFPLDPKRRKEWVRLVRRKNFVPGKHTFLCSKHFEASCFDLT--GQTR 76
Query: 67 KLSDTAVPSIFTFPDHL 83
+L AVP+IF F H+
Sbjct: 77 RLKMDAVPTIFDFCTHI 93
>2jtg_A THAP domain-containing protein 1; zinc finger, CCCH, DNA-binding,
metal-binding, zinc- finger, metal binding protein; NMR
{Homo sapiens} PDB: 2ko0_A 2l1g_A*
Length = 87
Score = 63.7 bits (155), Expect = 1e-14
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 7 NSLFWTSSTKFGRFPE-DKLRRKQWCIAMKRDKWKPSKHSKICSAHFTEDSFETNAWSER 65
N F +FP K+W A++R +KP+K+S ICS HFT D F+
Sbjct: 12 NRYDKDKPVSFHKFPLTRPSLCKEWEAAVRRKNFKPTKYSSICSEHFTPDCFKRE--CNN 69
Query: 66 KKLSDTAVPSIF 77
K L + AVP+IF
Sbjct: 70 KLLKENAVPTIF 81
>2jm3_A Hypothetical protein; zinc finger, domain, metal binding protein;
NMR {Caenorhabditis elegans}
Length = 91
Score = 46.7 bits (110), Expect = 6e-08
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 16 KFGRFP-EDKLRRKQWCIAMKRDKWKPSKHSKICSAHFTEDSFE 58
F R P + R++W A+ R + +ICSAHF +
Sbjct: 26 HFYRIPKRPLILRQRWLTAIGRTEETVVSQLRICSAHFEGGEKK 69
>3kde_C Transposable element P transposase; THAP domain, DNA-binding
domain, zinc-finger, beta-alpha-BET element
transposase, DNA integration; HET: BRU; 1.74A
{Drosophila melanogaster}
Length = 77
Score = 30.5 bits (68), Expect = 0.045
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 16 KFGRFPEDKLRRKQWCIAMKRDKWKPSKHSKICSAHFTEDSFETNAWS----ERKKLSDT 71
K P+ ++RK W ++ ++S+IC HF + ++ +R++L+
Sbjct: 15 KLIHVPKCAIKRKLWEQSLGCSL---GENSQICDTHFNDSQWKAAPAKGQTFKRRRLNAD 71
Query: 72 AVPS 75
AVPS
Sbjct: 72 AVPS 75
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 0.42
Identities = 16/117 (13%), Positives = 30/117 (25%), Gaps = 34/117 (29%)
Query: 21 PEDKLRRKQWCIAMKRDKWKPSKHSKICSAHFTEDSFETN-AW------------SERKK 67
R W + K+++ F E+ N + S +
Sbjct: 60 AVSGTLRLFWTLLSKQEE---------MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110
Query: 68 LSDTAVPSIFTFPDHLMKTPCPRKQP------AVRSLSAQEYMFVC------KTSKA 112
+ ++ K R QP A+ L + + + KT A
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.9 bits (59), Expect = 3.5
Identities = 25/127 (19%), Positives = 41/127 (32%), Gaps = 41/127 (32%)
Query: 21 PEDKLRRKQW-------CIAMKR--DKWKPS--------KHSKICSAHF-----TEDSFE 58
++ K+ I KR DK S ++++ A F T+D FE
Sbjct: 113 DTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLV-AIFGGQGNTDDYFE 171
Query: 59 TNAWSERKKLSDTAVPSIFTFPDHLMKTPCPRKQPAVRSLSAQEYMFVCKTSK-----AW 113
E + L T L+K +R+ E +F ++ W
Sbjct: 172 -----ELRDLYQTYHV----LVGDLIKFSAETLSELIRTTLDAEKVF----TQGLNILEW 218
Query: 114 FENPGSQ 120
ENP +
Sbjct: 219 LENPSNT 225
>3cqc_B Nuclear pore complex protein NUP133; nucleoporin, mRNA transport,
nucleus, phosphoprotein, protein transport,
translocation, polymorphism; 2.53A {Homo sapiens} PDB:
3cqg_B
Length = 227
Score = 25.8 bits (56), Expect = 5.5
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 23 DKLRRKQWCIAMKRDKWK 40
+ L+ + C A++RD W
Sbjct: 138 NDLKLEILCKALQRDNWS 155
>2e9x_D GINS complex subunit 4; eukaryotic DNA replication; HET: DNA; 2.30A
{Homo sapiens} SCOP: a.278.1.4 d.344.1.3 PDB: 2q9q_B*
2eho_A*
Length = 223
Score = 25.8 bits (56), Expect = 6.2
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 76 IFTFPDHLMKTPCPRKQPAVRSLSAQEYMFV 106
I F H+++ R + SLS +E F
Sbjct: 100 IEKFFPHVLEKEKTRPEGEPSSLSPEELAFA 130
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.3 bits (54), Expect = 8.3
Identities = 6/14 (42%), Positives = 8/14 (57%), Gaps = 2/14 (14%)
Query: 129 RLVTQWRLKPYTED 142
+L Q LK Y +D
Sbjct: 24 KL--QASLKLYADD 35
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.131 0.443
Gapped
Lambda K H
0.267 0.0502 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,178,144
Number of extensions: 102212
Number of successful extensions: 150
Number of sequences better than 10.0: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 10
Length of query: 145
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 60
Effective length of database: 4,328,508
Effective search space: 259710480
Effective search space used: 259710480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.3 bits)