RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5060
         (145 letters)



>d2d8ra1 g.39.1.16 (A:8-93) THAP domain-containing protein 2
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 86

 Score = 68.2 bits (166), Expect = 1e-16
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 2/77 (2%)

Query: 7  NSLFWTSSTKFGRFPEDKLRRKQWCIAMKRDKWKPSKHSKICSAHFTEDSFETNAWSERK 66
           +     +  F RFP D  RRK+W   ++R  + P KH+ +CS HF    F+     + +
Sbjct: 12 TTYNKHINISFHRFPLDPKRRKEWVRLVRRKNFVPGKHTFLCSKHFEASCFDLT--GQTR 69

Query: 67 KLSDTAVPSIFTFPDHL 83
          +L   AVP+IF F  H+
Sbjct: 70 RLKMDAVPTIFDFCTHI 86


>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168
           {Thermus thermophilus [TaxId: 274]}
          Length = 534

 Score = 25.6 bits (55), Expect = 2.8
 Identities = 3/23 (13%), Positives = 10/23 (43%)

Query: 65  RKKLSDTAVPSIFTFPDHLMKTP 87
           +   +   +P  + F + + +T 
Sbjct: 492 KAGFAKWQLPDAYVFAEEIPRTS 514


>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
           [TaxId: 28901]}
          Length = 643

 Score = 25.4 bits (55), Expect = 3.8
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 65  RKKLSDTAVPSIFTFPDHLMKTP 87
           RK++   A P +  + D L KT 
Sbjct: 580 RKEIGPLATPDVLHWTDSLPKTR 602


>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 640

 Score = 24.8 bits (53), Expect = 5.1
 Identities = 8/23 (34%), Positives = 10/23 (43%)

Query: 65  RKKLSDTAVPSIFTFPDHLMKTP 87
           RK +   A P +    D L KT 
Sbjct: 577 RKDIGPFAAPKLIILVDDLPKTR 599


>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin
           synthetase 1 {Bacillus brevis [TaxId: 1393]}
          Length = 514

 Score = 24.9 bits (53), Expect = 5.6
 Identities = 6/23 (26%), Positives = 10/23 (43%)

Query: 65  RKKLSDTAVPSIFTFPDHLMKTP 87
            ++L    +PS F   D +  T 
Sbjct: 476 SEELPTYMIPSYFIQLDKMPLTS 498


>d2i7na1 c.55.1.14 (A:236-381) Pantothenate kinase 1, PANK1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 146

 Score = 23.7 bits (51), Expect = 7.6
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 7/52 (13%)

Query: 12  TSSTKFGRFPEDKLRRKQWCIAMKRDKWKPSKHSKICS----AHFTEDSFET 59
             +  F RFP   + R    I M  +K   S H+ +C+    A   E+ F  
Sbjct: 69  KGNLHFIRFPSCAMHR---FIQMGSEKNFSSLHTTLCATGGGAFKFEEDFRM 117


>d1ev13_ b.121.4.1 (3:) Human enterovirus B coat proteins {Human
           echovirus 1 [TaxId: 46633]}
          Length = 239

 Score = 24.0 bits (52), Expect = 7.7
 Identities = 2/20 (10%), Positives = 3/20 (15%)

Query: 116 NPGSQFTFLYHFCRLVTQWR 135
                 T +         W 
Sbjct: 93  ESVMNRTLMGEILNYYAHWS 112


>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes
           sp. [TaxId: 512]}
          Length = 503

 Score = 24.2 bits (51), Expect = 8.2
 Identities = 6/27 (22%), Positives = 10/27 (37%)

Query: 61  AWSERKKLSDTAVPSIFTFPDHLMKTP 87
            +    +L+D   P  +   D L K  
Sbjct: 463 TFCRSSELADFKRPKRYFILDQLPKNA 489


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.131    0.443 

Gapped
Lambda     K      H
   0.267   0.0419    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 571,243
Number of extensions: 22985
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 8
Length of query: 145
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 68
Effective length of database: 1,350,386
Effective search space: 91826248
Effective search space used: 91826248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)