RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5063
(681 letters)
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural
genomics consortium, SGC, PR kinase,
transferase-antibiotic complex; HET: STU GOL; 1.65A
{Homo sapiens}
Length = 310
Score = 208 bits (531), Expect = 5e-62
Identities = 92/168 (54%), Positives = 114/168 (67%), Gaps = 25/168 (14%)
Query: 471 ASKSRIFRASDLVRGPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQ 530
+ RIFR SDL+ G +LG+G FGQ +VTHRETGEVMV+KEL R DEE ++ FLKE
Sbjct: 1 SMPHRIFRPSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKE--- 57
Query: 531 GLIYLIDLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLK 590
V V+R L H NV++FIGVLYKD++LN +TEYI GGTL+
Sbjct: 58 ----------------------VKVMRCLEHPNVLKFIGVLYKDKRLNFITEYIKGGTLR 95
Query: 591 ELLQDPGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVRE 638
+++ PW QRV+FA+DIA+GM YLHSMN+IHRDLNS NCLVRE
Sbjct: 96 GIIKSMDSQYPWSQRVSFAKDIASGMAYLHSMNIIHRDLNSHNCLVRE 143
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3;
intramolecular (fusion) protein-protein complex, protein
binding/transcription complex; NMR {Mus musculus}
Length = 182
Score = 148 bits (376), Expect = 1e-41
Identities = 42/131 (32%), Positives = 64/131 (48%), Gaps = 2/131 (1%)
Query: 1 MEDSETPEILTCAGCLNNIVEDEYVQALSQEWHTDCFRCSACDVMLDNWYFEKDGLLFCK 60
M TPEI CAGC +I++ ++AL + WH+ C +CS C V L F + ++CK
Sbjct: 52 MGSGGTPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSRGESVYCK 111
Query: 61 EDYNGKYGEACQNCGQ--MMSGPVMVVGDHKFHPECFKCTSCSCCIGDGESYALVERSIL 118
+D+ ++G C C + V D +H CF C C + G+ + L+E S L
Sbjct: 112 DDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRL 171
Query: 119 YCGLCYKRQMQ 129
C Y+ Q
Sbjct: 172 VCKADYETAKQ 182
Score = 55.7 bits (134), Expect = 4e-09
Identities = 14/91 (15%), Positives = 29/91 (31%), Gaps = 4/91 (4%)
Query: 38 RCSACDVMLDNWYFEKDGLLFCKEDYNGKYGEACQNCGQMMSG-PVMVVGDHKFHPECFK 96
R N ++ G C C Q + ++ D +H +C K
Sbjct: 30 RLENTQFDAANGIDDEGGSGGHMGSGGTPEIPMCAGCDQHILDRFILKALDRHWHSKCLK 89
Query: 97 CTSCSCCIGDGESYALVERSILYCGLCYKRQ 127
C+ C + + + +YC + ++
Sbjct: 90 CSDCHVPLAE-RCF--SRGESVYCKDDFFKR 117
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein
ISL-1; protein-protein complex, LIM domain, Zn finger,
activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Length = 169
Score = 147 bits (373), Expect = 2e-41
Identities = 41/128 (32%), Positives = 64/128 (50%), Gaps = 2/128 (1%)
Query: 6 TPEILTCAGCLNNIVEDEYVQALSQEWHTDCFRCSACDVMLDNWYFEKDGLLFCKEDYNG 65
TPEI CAGC +I++ ++AL + WH+ C +CS C V L F + ++CK+D+
Sbjct: 3 TPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFFK 62
Query: 66 KYGEACQNCGQMM--SGPVMVVGDHKFHPECFKCTSCSCCIGDGESYALVERSILYCGLC 123
++G C C + + V D +H CF C C + G+ + L+E S L C
Sbjct: 63 RFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKAD 122
Query: 124 YKRQMQPL 131
Y+ Q
Sbjct: 123 YETAKQGG 130
Score = 93.0 bits (231), Expect = 3e-22
Identities = 24/94 (25%), Positives = 30/94 (31%), Gaps = 4/94 (4%)
Query: 12 CAGCLNNI-VEDEYVQALSQEWHTDCFRCSACDVML---DNWYFEKDGLLFCKEDYNGKY 67
CA C I +A +H CF C C L D +Y +D L CK DY
Sbjct: 68 CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAK 127
Query: 68 GEACQNCGQMMSGPVMVVGDHKFHPECFKCTSCS 101
G G MV + H +
Sbjct: 128 QGGSGGSGGSGGGTPMVAASPERHDGGLQANPVE 161
Score = 35.2 bits (81), Expect = 0.027
Identities = 6/33 (18%), Positives = 11/33 (33%), Gaps = 1/33 (3%)
Query: 12 CAGCLNNIVEDEYVQALSQEWHTDCFRCSACDV 44
G + + A S E H + + +V
Sbjct: 131 SGGSGGSG-GGTPMVAASPERHDGGLQANPVEV 162
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET:
ATP; 3.46A {Homo sapiens}
Length = 319
Score = 149 bits (377), Expect = 3e-40
Identities = 54/190 (28%), Positives = 82/190 (43%), Gaps = 36/190 (18%)
Query: 455 PACDLSRTRSRSFRVEASKSRIFRA------SDLVRGPLLGQGFFGQVYRVTHRETGEVM 508
P +LS +RSF +AS++ IF L G L+G+G FGQVY GEV
Sbjct: 2 PEMNLSLLSARSFPRKASQTSIFLQEWDIPFEQLEIGELIGKGRFGQVYHGRWH--GEVA 59
Query: 509 VLKELY--RVDEEAEKNFLKESKQGLIYLIDLGSHGLINNLHCFSQVAVLRSLHHHNVIR 566
+ + + R +E+ K F +E V R H NV+
Sbjct: 60 I-RLIDIERDNEDQLKAFKRE-------------------------VMAYRQTRHENVVL 93
Query: 567 FIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLPWGQRVNFARDIAAGMTYLHSMNLIH 626
F+G L ++T G TL +++D L + A++I GM YLH+ ++H
Sbjct: 94 FMGACMSPPHLAIITSLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYLHAKGILH 153
Query: 627 RDLNSQNCLV 636
+DL S+N
Sbjct: 154 KDLKSKNVFY 163
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding,
nucleotide serine/threonine-protein kinase, transferase,
signaling Pro; HET: ACP; 1.80A {Dictyostelium
discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Length = 287
Score = 142 bits (360), Expect = 3e-38
Identities = 37/171 (21%), Positives = 77/171 (45%), Gaps = 24/171 (14%)
Query: 480 SDLVRGPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLG 539
+++ +G+G FG V++ + V+ +K L D E E +++ ++
Sbjct: 19 NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQE--------- 69
Query: 540 SHGLINNLHCFSQ-VAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQ 598
F + V ++ +L+H N+++ G+++ +V E++ G L L D
Sbjct: 70 ----------FQREVFIMSNLNHPNIVKLYGLMHN--PPRMVMEFVPCGDLYHRLLDKAH 117
Query: 599 PLPWGQRVNFARDIAAGMTYLHSMN--LIHRDLNSQNCLVREVGSGFDFHL 647
P+ W ++ DIA G+ Y+ + N ++HRDL S N ++ +
Sbjct: 118 PIKWSVKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCA 168
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain,
alternative splicing, ATP-binding, disease MU kinase,
metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Length = 307
Score = 137 bits (346), Expect = 5e-36
Identities = 49/161 (30%), Positives = 72/161 (44%), Gaps = 31/161 (19%)
Query: 480 SDLVRGPLLGQGFFGQVYRVTHRETGEVMV--LKELYRVDEEAEKNFLKESKQGLIYLID 537
S+++ +G G FG VY+ G+V V LK + E + F E
Sbjct: 36 SEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVV-DPTPEQFQAFRNE---------- 82
Query: 538 LGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPG 597
VAVLR H N++ F+G + KD L +VT++ G +L + L
Sbjct: 83 ---------------VAVLRKTRHVNILLFMGYMTKDN-LAIVTQWCEGSSLYKHLHVQE 126
Query: 598 QPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVRE 638
Q ++ AR A GM YLH+ N+IHRD+ S N + E
Sbjct: 127 TKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHE 167
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase,
transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A*
3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A*
3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A*
2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A*
Length = 289
Score = 135 bits (343), Expect = 8e-36
Identities = 44/161 (27%), Positives = 65/161 (40%), Gaps = 31/161 (19%)
Query: 480 SDLVRGPLLGQGFFGQVYRVTHRETGEVMVLKELY--RVDEEAEKNFLKESKQGLIYLID 537
+ G +G G FG VY+ G+V V K L + + F E
Sbjct: 24 GQITVGQRIGSGSFGTVYKGKWH--GDVAV-KMLNVTAPTPQQLQAFKNE---------- 70
Query: 538 LGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPG 597
V VLR H N++ F+G + L +VT++ G +L L
Sbjct: 71 ---------------VGVLRKTRHVNILLFMGYSTAPQ-LAIVTQWCEGSSLYHHLHASE 114
Query: 598 QPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVRE 638
+ ++ AR A GM YLH+ ++IHRDL S N + E
Sbjct: 115 TKFEMKKLIDIARQTARGMDYLHAKSIIHRDLKSNNIFLHE 155
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene,
transcription, developmental protein; 2.40A {Homo
sapiens} PDB: 2xjz_A
Length = 131
Score = 129 bits (327), Expect = 1e-35
Identities = 40/131 (30%), Positives = 58/131 (44%), Gaps = 8/131 (6%)
Query: 9 ILTCAGCLNNIVEDEYVQALSQEWHTDCFRCSACDVMLDN---WYFEKDGLLFCKEDYNG 65
+LTC GC NI + +++A+ Q WH DC C C L + K G C+ DY
Sbjct: 2 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 61
Query: 66 KYG--EACQNCGQMMSGP--VMVVGDHKFHPECFKCTSCSCCIGDGESYALVERSILYCG 121
+G C +C + + M V D +H ECFKC +C G+ Y L+ S + C
Sbjct: 62 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLIN-SDIVCE 120
Query: 122 LCYKRQMQPLG 132
+ G
Sbjct: 121 QDIYEWTKING 131
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2,
phosphorylation, transferase; HET: STU; 2.50A
{Arabidopsis thaliana} PDB: 3ppz_A*
Length = 309
Score = 132 bits (334), Expect = 2e-34
Identities = 51/163 (31%), Positives = 78/163 (47%), Gaps = 33/163 (20%)
Query: 480 SDLVRGPLLGQGFFGQVYRVTHRETGEVMVLKELYRVD--EEAEKNFLKESKQGLIYLID 537
DL +G G FG V+R + +V V K L D E FL+E
Sbjct: 37 CDLNIKEKIGAGSFGTVHRAEWHGS-DVAV-KILMEQDFHAERVNEFLRE---------- 84
Query: 538 LGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELL--QD 595
VA+++ L H N++ F+G + + L++VTEY++ G+L LL
Sbjct: 85 ---------------VAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSG 129
Query: 596 PGQPLPWGQRVNFARDIAAGMTYLHSMN--LIHRDLNSQNCLV 636
+ L +R++ A D+A GM YLH+ N ++HR+L S N LV
Sbjct: 130 AREQLDERRRLSMAYDVAKGMNYLHNRNPPIVHRNLKSPNLLV 172
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage
kinase, MLK family, MLK1 and MLK3 subtype selective
inhibitors; HET: VIN; 2.60A {Homo sapiens}
Length = 271
Score = 129 bits (327), Expect = 7e-34
Identities = 48/173 (27%), Positives = 68/173 (39%), Gaps = 34/173 (19%)
Query: 480 SDLVRGPLLGQGFFGQVYRVTHRETGEV---MVLKELYRVDEEAEKNFLKESKQGLIYLI 536
++L ++G G FG+VYR EV + + +N +E
Sbjct: 7 AELTLEEIIGIGGFGKVYRAFWIGD-EVAVKAARHDPDEDISQTIENVRQE--------- 56
Query: 537 DLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDP 596
+ L H N+I GV K+ L LV E+ GG L +L
Sbjct: 57 ----------------AKLFAMLKHPNIIALRGVCLKEPNLCLVMEFARGGPLNRVLS-- 98
Query: 597 GQPLPWGQRVNFARDIAAGMTYLHSMN---LIHRDLNSQNCLVREVGSGFDFH 646
G+ +P VN+A IA GM YLH +IHRDL S N L+ + D
Sbjct: 99 GKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLS 151
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding
protein 1; B-tandem zipper, protein binding; 1.30A {Mus
musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB:
2dfy_X 2xjz_I 2xjy_B
Length = 188
Score = 124 bits (312), Expect = 6e-33
Identities = 36/161 (22%), Positives = 65/161 (40%), Gaps = 8/161 (4%)
Query: 11 TCAGCLNNIVEDEYVQALSQEWHTDCFRCSACDVMLDNW---YFEKDGLLFCKEDYNGKY 67
CAGC I + + A+ WH+ C +CS+C L + + K G++ C+ DY +
Sbjct: 7 RCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLF 66
Query: 68 GEA--CQNCGQMMSG--PVMVVGDHKFHPECFKCTSCSCCIGDGESYALVERSILYCGLC 123
G + C CGQ + VM + +H +CF C++C + G+ + + S L+C
Sbjct: 67 GNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGS-LFCEHD 125
Query: 124 YKRQMQPLGRAKDAAFPMMRKPHCIRLVEIQPSAHCSQGIK 164
+ + + +V G +
Sbjct: 126 RPTALINGHLNSGGSGGSGGSGGDVMVVGEPTLMGGEFGDE 166
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat,
ATP-binding, cell junction, cell membrane,
integrin-binding protein, membrane, nucleotide- binding;
1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A*
Length = 271
Score = 124 bits (314), Expect = 4e-32
Identities = 31/164 (18%), Positives = 62/164 (37%), Gaps = 34/164 (20%)
Query: 480 SDLVRGPLLGQGFFGQVYRVTHRETGEVMVLKELY--RVDEEAEKNFLKESKQGLIYLID 537
L L + G++++ + +++V K L ++F +E
Sbjct: 10 KQLNFLTKLNENHSGELWKGRWQGN-DIVV-KVLKVRDWSTRKSRDFNEE---------- 57
Query: 538 LGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNL--VTEYIAGGTLKELLQD 595
LR H NV+ +G + +T ++ G+L +L +
Sbjct: 58 ---------------CPRLRIFSHPNVLPVLGACQSPPAPHPTLITHWMPYGSLYNVLHE 102
Query: 596 -PGQPLPWGQRVNFARDIAAGMTYLHSMN--LIHRDLNSQNCLV 636
+ Q V FA D+A GM +LH++ + LNS++ ++
Sbjct: 103 GTNFVVDQSQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVMI 146
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase
activator complex; HET: ADN; 2.00A {Homo sapiens}
Length = 307
Score = 125 bits (316), Expect = 5e-32
Identities = 39/162 (24%), Positives = 66/162 (40%), Gaps = 36/162 (22%)
Query: 480 SDLVRGPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLG 539
++ ++G+G FG V + R +V + K++ E K F+ E
Sbjct: 8 KEIEVEEVVGRGAFGVVCKAKWRAK-DVAI-KQIE--SESERKAFIVE------------ 51
Query: 540 SHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELL--QDPG 597
+ L ++H N+++ G + LV EY GG+L +L +P
Sbjct: 52 -------------LRQLSRVNHPNIVKLYGACLN--PVCLVMEYAEGGSLYNVLHGAEPL 96
Query: 598 QPLPWGQRVNFARDIAAGMTYLHSMN---LIHRDLNSQNCLV 636
+++ + G+ YLHSM LIHRDL N L+
Sbjct: 97 PYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLL 138
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion,
acrosom; 2.62A {Homo sapiens}
Length = 126
Score = 117 bits (295), Expect = 3e-31
Identities = 40/130 (30%), Positives = 57/130 (43%), Gaps = 10/130 (7%)
Query: 4 SETPEILTCAGCLNNIVEDEYVQALSQEWHTDCFRCSACDVML-DNWYFEKDGLLFCKED 62
SE P CAGC I +EY QA +Q WH F C CD +L Y + CK
Sbjct: 1 SEKPR---CAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPC 57
Query: 63 YNGKYGEACQNCGQMMSGPVMVV--GDHKFHP--ECFKCTSCSCCIGDGESYALVERSIL 118
Y + CQ C + V V + +H ECF C+ CS C+ + + +
Sbjct: 58 YVKNHAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGM--V 115
Query: 119 YCGLCYKRQM 128
+C + K++M
Sbjct: 116 FCSVECKKRM 125
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase
domain, multitargeted small M kinase inhibitor; HET:
ITI; 2.70A {Homo sapiens}
Length = 327
Score = 118 bits (297), Expect = 3e-29
Identities = 41/174 (23%), Positives = 74/174 (42%), Gaps = 35/174 (20%)
Query: 472 SKSRIFRASDLVRGPLLGQGFFGQVYR---VTHRETGEVMV----LKELYRVDEEAEKNF 524
+ RI + ++ + +LG G FG VY+ + E ++ V L+E +A K
Sbjct: 7 ALLRILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT--SPKANKEI 64
Query: 525 LKESKQGLIYLIDLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYI 584
L E V+ S+ + +V R +G+ + L+T+ +
Sbjct: 65 LDE-------------------------AYVMASVDNPHVCRLLGICLTST-VQLITQLM 98
Query: 585 AGGTLKELLQDPGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVRE 638
G L + +++ + +N+ IA GM YL L+HRDL ++N LV+
Sbjct: 99 PFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKT 152
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES,
fujinami, avian sarcoma, viral, feline virus, SGC; HET:
STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Length = 377
Score = 117 bits (296), Expect = 9e-29
Identities = 47/162 (29%), Positives = 70/162 (43%), Gaps = 30/162 (18%)
Query: 480 SDLVRGPLLGQGFFGQVYR-VTHRETGEVMV--LKELYRVDEEAEKNFLKESKQGLIYLI 536
DLV G +G+G FG+V+ + V V +E + + + FL+E
Sbjct: 114 EDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRE--TLPPDLKAKFLQE--------- 162
Query: 537 DLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDP 596
+L+ H N++R IGV + + + +V E + GG L+
Sbjct: 163 ----------------ARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTE 206
Query: 597 GQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVRE 638
G L + D AAGM YL S IHRDL ++NCLV E
Sbjct: 207 GARLRVKTLLQMVGDAAAGMEYLESKCCIHRDLAARNCLVTE 248
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase
inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB:
3sxr_A*
Length = 268
Score = 114 bits (288), Expect = 1e-28
Identities = 43/159 (27%), Positives = 66/159 (41%), Gaps = 27/159 (16%)
Query: 480 SDLVRGPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLG 539
++ LG G FG V + +V V K + + +E F +E
Sbjct: 8 EEITLLKELGSGQFGVVKLGKWKGQYDVAV-KMI-KEGSMSEDEFFQE------------ 53
Query: 540 SHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQP 599
+ L H +++F GV K+ + +VTEYI+ G L L+ G+
Sbjct: 54 -------------AQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYISNGCLLNYLRSHGKG 100
Query: 600 LPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVRE 638
L Q + D+ GM +L S IHRDL ++NCLV
Sbjct: 101 LEPSQLLEMCYDVCEGMAFLESHQFIHRDLAARNCLVDR 139
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 119 bits (299), Expect = 1e-28
Identities = 45/205 (21%), Positives = 82/205 (40%), Gaps = 35/205 (17%)
Query: 453 LRPACDLSRTRSRSFRVEASKSRIFRASDLVRGPLLGQGFFGQVYRVTHRETGEVMVLKE 512
L + +D+ LG G +G+VY ++ + +K
Sbjct: 193 LHYPAPKRNKPTIYGVSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKT 252
Query: 513 LYRVDEEAEKNFLKESKQGLIYLIDLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLY 572
L + D + FLKE+ V++ + H N+++ +GV
Sbjct: 253 L-KEDTMEVEEFLKEAA-------------------------VMKEIKHPNLVQLLGVCT 286
Query: 573 KDRKLNLVTEYIAGGTLKELLQDP-GQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNS 631
++ ++TE++ G L + L++ Q + + A I++ M YL N IHR+L +
Sbjct: 287 REPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRNLAA 346
Query: 632 QNCLVRE-----VGSGFDFHLGQIY 651
+NCLV E V DF L ++
Sbjct: 347 RNCLVGENHLVKVA---DFGLSRLM 368
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN
inhibitor, ATP-binding mutation, membrane,
nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A
{Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A*
Length = 327
Score = 116 bits (292), Expect = 1e-28
Identities = 43/170 (25%), Positives = 72/170 (42%), Gaps = 31/170 (18%)
Query: 475 RIFRASDLVRGPLLGQGFFGQVYR---VTHRETGEVMV-LKELYRVDEEAEKNFLKESKQ 530
IF L LG+G FG V + +V +K+L + +++F +E
Sbjct: 18 TIFEERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQRE--- 74
Query: 531 GLIYLIDLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRK--LNLVTEYIAGGT 588
+ +L++LH ++++ GV Y + L LV EY+ G
Sbjct: 75 ----------------------IQILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGC 112
Query: 589 LKELLQDPGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVRE 638
L++ LQ L + + ++ I GM YL S +HRDL ++N LV
Sbjct: 113 LRDFLQRHRARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVES 162
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding,
transfera phosphorylation, transmembrane,
tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Length = 325
Score = 115 bits (289), Expect = 2e-28
Identities = 43/165 (26%), Positives = 66/165 (40%), Gaps = 33/165 (20%)
Query: 480 SDLVRGPLLGQGFFGQVYR--VTHRETGEVMV----LKELYRVDEEAEKNFLKESKQGLI 533
S + ++G G G+V + +V V LK Y E ++FL E
Sbjct: 49 SRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGY--TERQRRDFLSE------ 100
Query: 534 YLIDLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELL 593
+++ H N+IR GV+ + R +VTEY+ G+L L
Sbjct: 101 -------------------ASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFL 141
Query: 594 QDPGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVRE 638
+ Q V R + AGM YL + +HRDL ++N LV
Sbjct: 142 RTHDGQFTIMQLVGMLRGVGAGMRYLSDLGYVHRDLAARNVLVDS 186
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase,
4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3,
2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43;
1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A*
3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A*
1k2p_A
Length = 283
Score = 114 bits (287), Expect = 2e-28
Identities = 42/159 (26%), Positives = 67/159 (42%), Gaps = 27/159 (16%)
Query: 480 SDLVRGPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLG 539
DL LG G FG V R +V + K + + +E F++E
Sbjct: 24 KDLTFLKELGTGQFGVVKYGKWRGQYDVAI-KMI-KEGSMSEDEFIEE------------ 69
Query: 540 SHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQP 599
V+ +L H +++ GV K R + ++TEY+A G L L++
Sbjct: 70 -------------AKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHR 116
Query: 600 LPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVRE 638
Q + +D+ M YL S +HRDL ++NCLV +
Sbjct: 117 FQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVND 155
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP
binding, transferase-transfera inhibitor complex; HET:
046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A*
3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A*
3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A*
Length = 295
Score = 114 bits (287), Expect = 3e-28
Identities = 48/174 (27%), Positives = 76/174 (43%), Gaps = 31/174 (17%)
Query: 471 ASKSRIFRASDLVRGPLLGQGFFGQVYR----VTHRETGEVMVLKELYRVDEEAEKNFLK 526
S F L LG+G FG V TGEV+ +K+L EE ++F +
Sbjct: 1 GSDPTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFER 60
Query: 527 ESKQGLIYLIDLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRK--LNLVTEYI 584
E + +L+SL H N++++ GV Y + L L+ EY+
Sbjct: 61 E-------------------------IEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYL 95
Query: 585 AGGTLKELLQDPGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVRE 638
G+L++ LQ + + + + + I GM YL + IHRDL ++N LV
Sbjct: 96 PYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVEN 149
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain,
transferase-transferase inhibit complex; HET: PTR 0NT;
1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A*
3eyh_A*
Length = 302
Score = 114 bits (288), Expect = 3e-28
Identities = 44/173 (25%), Positives = 71/173 (41%), Gaps = 36/173 (20%)
Query: 475 RIFRASDLVRGPLLGQGFFGQVYRVTHRETGE-------VMVLKELYRVDEEAEKNFLKE 527
F L R LG+G FG+V + G+ V LK + KE
Sbjct: 16 THFEKRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPES--GGNHIADLKKE 73
Query: 528 SKQGLIYLIDLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRK--LNLVTEYIA 585
+ +LR+L+H N++++ G+ +D + L+ E++
Sbjct: 74 -------------------------IEILRNLYHENIVKYKGICTEDGGNGIKLIMEFLP 108
Query: 586 GGTLKELLQDPGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVRE 638
G+LKE L + Q++ +A I GM YL S +HRDL ++N LV
Sbjct: 109 SGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVES 161
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP
binding, phosphorylation, intracellular,
transferase-transferase inhibitor complex; HET: IAQ;
1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A*
3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A*
3mj1_A* 3mj2_A*
Length = 267
Score = 113 bits (284), Expect = 5e-28
Identities = 40/159 (25%), Positives = 66/159 (41%), Gaps = 27/159 (16%)
Query: 480 SDLVRGPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLG 539
S+L +G G FG V+ +V + K + R +E++F++E
Sbjct: 8 SELTFVQEIGSGQFGLVHLGYWLNKDKVAI-KTI-REGAMSEEDFIEE------------ 53
Query: 540 SHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQP 599
V+ L H +++ GV + + LVTE++ G L + L+
Sbjct: 54 -------------AEVMMKLSHPKLVQLYGVCLEQAPICLVTEFMEHGCLSDYLRTQRGL 100
Query: 600 LPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVRE 638
+ D+ GM YL +IHRDL ++NCLV E
Sbjct: 101 FAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGE 139
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding,
tyrosine-protein kinase, proto-oncogene, phosphoprotein,
disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo
sapiens}
Length = 326
Score = 114 bits (287), Expect = 5e-28
Identities = 46/187 (24%), Positives = 78/187 (41%), Gaps = 31/187 (16%)
Query: 458 DLSRTRSRSFRVEASKSRIFRASDLVRGPLLGQGFFGQVYRVTHRETGE---VMV-LKEL 513
+L + E F L LG+G FG V + + +V +K+L
Sbjct: 19 NLYFQGAMGSAFEDRDPTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKL 78
Query: 514 YRVDEEAEKNFLKESKQGLIYLIDLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYK 573
EE ++F +E + +L+SL H N++++ GV Y
Sbjct: 79 QHSTEEHLRDFERE-------------------------IEILKSLQHDNIVKYKGVCYS 113
Query: 574 DRK--LNLVTEYIAGGTLKELLQDPGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNS 631
+ L L+ EY+ G+L++ LQ + + + + + I GM YL + IHRDL +
Sbjct: 114 AGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLAT 173
Query: 632 QNCLVRE 638
+N LV
Sbjct: 174 RNILVEN 180
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase;
HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Length = 333
Score = 113 bits (286), Expect = 9e-28
Identities = 52/166 (31%), Positives = 75/166 (45%), Gaps = 34/166 (20%)
Query: 480 SDLVRGPLLGQGFFGQVYR---VTHRETGEVMV----LKELYRVDEEAEKNFLKESKQGL 532
S + R ++G G FG+VY+ T EV V LK Y E+ +FL E
Sbjct: 44 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGY--TEKQRVDFLGE----- 96
Query: 533 IYLIDLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKEL 592
++ HHN+IR GV+ K + + ++TEY+ G L +
Sbjct: 97 --------------------AGIMGQFSHHNIIRLEGVISKYKPMMIITEYMENGALDKF 136
Query: 593 LQDPGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVRE 638
L++ Q V R IAAGM YL +MN +HRDL ++N LV
Sbjct: 137 LREKDGEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNS 182
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex,
DOWN-regulated kinase, ordered activation loop; HET: PTR
PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1
d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A*
3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 115 bits (291), Expect = 9e-28
Identities = 44/177 (24%), Positives = 80/177 (45%), Gaps = 37/177 (20%)
Query: 480 SDLVRGPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLG 539
L LG G FG+V+ T+ + +V V K + + + + FL E+
Sbjct: 188 ESLKLEKKLGAGQFGEVWMATYNKHTKVAV-KTM-KPGSMSVEAFLAEAN---------- 235
Query: 540 SHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDP-GQ 598
V+++L H +++ V+ K+ + ++TE++A G+L + L+ G
Sbjct: 236 ---------------VMKTLQHDKLVKLHAVVTKEP-IYIITEFMAKGSLLDFLKSDEGS 279
Query: 599 PLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVRE-----VGSGFDFHLGQI 650
P + ++F+ IA GM ++ N IHRDL + N LV + DF L ++
Sbjct: 280 KQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIA---DFGLARV 333
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment,
structural genomics, mutant, structural genomics
consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB:
2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A
2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A*
2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Length = 373
Score = 114 bits (287), Expect = 9e-28
Identities = 45/166 (27%), Positives = 72/166 (43%), Gaps = 33/166 (19%)
Query: 479 ASDLVRGPLLGQGFFGQVYR--VTHRETGEVMV----LKELYRVDEEAEKNFLKESKQGL 532
A+++ ++G G FG+V + E+ V LK Y E+ ++FL E
Sbjct: 44 ATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGY--TEKQRRDFLGE----- 96
Query: 533 IYLIDLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKEL 592
+++ H N+IR GV+ K + + +VTEY+ G+L
Sbjct: 97 --------------------ASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSF 136
Query: 593 LQDPGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVRE 638
L+ Q V R IA+GM YL M +HRDL ++N L+
Sbjct: 137 LRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINS 182
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase,
quinoxaline, alternative splicing, ATP-binding,
chromosomal rearrangement; HET: IHX; 1.40A {Homo
sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A*
2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A*
2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A*
3ctj_A* ...
Length = 298
Score = 112 bits (283), Expect = 1e-27
Identities = 34/169 (20%), Positives = 64/169 (37%), Gaps = 34/169 (20%)
Query: 477 FRASDLVRGPLLGQGFFGQVYR--VTHRETGEVMV----LKELYRVDEEAEKNFLKESKQ 530
+ + ++G+G FG VY + + ++ L + D FL E
Sbjct: 22 PSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRIT--DIGEVSQFLTE--- 76
Query: 531 GLIYLIDLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGV-LYKDRKLNLVTEYIAGGTL 589
+++ H NV+ +G+ L + +V Y+ G L
Sbjct: 77 ----------------------GIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDL 114
Query: 590 KELLQDPGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVRE 638
+ +++ + F +A GM YL S +HRDL ++NC++ E
Sbjct: 115 RNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKFVHRDLAARNCMLDE 163
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene,
ATP-binding, cell cycle, disea mutation, glycoprotein,
membrane, nucleotide-binding; HET: 03P; 1.50A {Homo
sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A*
1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A*
2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A*
2jiu_A* ...
Length = 327
Score = 113 bits (285), Expect = 1e-27
Identities = 41/174 (23%), Positives = 74/174 (42%), Gaps = 35/174 (20%)
Query: 472 SKSRIFRASDLVRGPLLGQGFFGQVYR---VTHRETGEVMV----LKELYRVDEEAEKNF 524
+ RI + ++ + +LG G FG VY+ + E ++ V L+E +A K
Sbjct: 7 ALLRILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREAT--SPKANKEI 64
Query: 525 LKESKQGLIYLIDLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYI 584
L E V+ S+ + +V R +G+ + L+T+ +
Sbjct: 65 LDE-------------------------AYVMASVDNPHVCRLLGICLTS-TVQLITQLM 98
Query: 585 AGGTLKELLQDPGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVRE 638
G L + +++ + +N+ IA GM YL L+HRDL ++N LV+
Sbjct: 99 PFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKT 152
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase,
ATP binding, phosphoryla transferase; HET: ATP; 1.75A
{Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Length = 289
Score = 112 bits (282), Expect = 1e-27
Identities = 33/164 (20%), Positives = 66/164 (40%), Gaps = 32/164 (19%)
Query: 480 SDLVRGPLLGQGFFGQVYR------VTHRETGEVMV-LKELYRVDEEAEKNFLKESKQGL 532
DL+ LGQG F ++++ + + E V LK L + ++F +
Sbjct: 8 EDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEA----- 62
Query: 533 IYLIDLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKEL 592
+++ L H +++ GV + LV E++ G+L
Sbjct: 63 --------------------ASMMSKLSHKHLVLNYGVCVCGDENILVQEFVKFGSLDTY 102
Query: 593 LQDPGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLV 636
L+ + ++ A+ +AA M +L LIH ++ ++N L+
Sbjct: 103 LKKNKNCINILWKLEVAKQLAAAMHFLEENTLIHGNVCAKNILL 146
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation,
cancer, PAN inhibitor, ATP-binding nucleotide-binding,
phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo
sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A*
Length = 318
Score = 112 bits (283), Expect = 2e-27
Identities = 43/173 (24%), Positives = 72/173 (41%), Gaps = 38/173 (21%)
Query: 475 RIFRASDLVRGPLLGQGFFGQVYRVTHRETGE-------VMVLKELYRVDEEAEKNFLKE 527
+F L + LG+G FG+V + T + V LK + + +E
Sbjct: 26 TVFHKRYLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKA--DAGPQHRSGWKQE 83
Query: 528 SKQGLIYLIDLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRK--LNLVTEYIA 585
+ +LR+L+H ++I++ G L LV EY+
Sbjct: 84 -------------------------IDILRTLYHEHIIKYKGCCEDAGAASLQLVMEYVP 118
Query: 586 GGTLKELLQDPGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVRE 638
G+L++ L + Q + FA+ I GM YLH+ + IHRDL ++N L+
Sbjct: 119 LGSLRDYLPR--HSIGLAQLLLFAQQICEGMAYLHAQHYIHRDLAARNVLLDN 169
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal
transduction, GRB2, SHC, ATP-binding, glycoprotein,
membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Length = 373
Score = 113 bits (285), Expect = 2e-27
Identities = 37/209 (17%), Positives = 72/209 (34%), Gaps = 34/209 (16%)
Query: 437 SSRNRRDAWYNSPPKSLRPACDLSRTRSRSFRVEASKSRIFRASDLVRGPLLGQGFFGQV 496
S + + + DLS + + + ++G+G FG V
Sbjct: 46 SLYKKAGSENLYFQGANTVHIDLSALNPELVQAVQHVVIGPSSLIVHFNEVIGRGHFGCV 105
Query: 497 YR--VTHRETGEVMV----LKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLINNLHCF 550
Y + + ++ L + D FL E
Sbjct: 106 YHGTLLDNDGKKIHCAVKSLNRIT--DIGEVSQFLTEG---------------------- 141
Query: 551 SQVAVLRSLHHHNVIRFIGV-LYKDRKLNLVTEYIAGGTLKELLQDPGQPLPWGQRVNFA 609
+++ H NV+ +G+ L + +V Y+ G L+ +++ + F
Sbjct: 142 ---IIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFG 198
Query: 610 RDIAAGMTYLHSMNLIHRDLNSQNCLVRE 638
+A GM +L S +HRDL ++NC++ E
Sbjct: 199 LQVAKGMKFLASKKFVHRDLAARNCMLDE 227
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding,
glycoprotein, membrane, nucleotide-binding,
phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Length = 367
Score = 113 bits (284), Expect = 2e-27
Identities = 48/188 (25%), Positives = 73/188 (38%), Gaps = 46/188 (24%)
Query: 477 FRASDLVRGPLLGQGFFGQVYR----VTHRETGEVMV----LKELYRVDEEAEKNFLKES 528
++ LG G FG+VY + + V L E+ E+ E +FL E
Sbjct: 68 VPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVC--SEQDELDFLME- 124
Query: 529 KQGLIYLIDLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGT 588
++ +H N++R IGV + ++ E +AGG
Sbjct: 125 ------------------------ALIISKFNHQNIVRCIGVSLQSLPRFILLELMAGGD 160
Query: 589 LKELLQ------DPGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVREVGSG 642
LK L+ L ++ ARDIA G YL + IHRD+ ++NCL+ G G
Sbjct: 161 LKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPG 220
Query: 643 F-----DF 645
DF
Sbjct: 221 RVAKIGDF 228
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase;
2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A*
1u54_A* 3eqr_A* 3eqp_B*
Length = 291
Score = 111 bits (280), Expect = 2e-27
Identities = 49/174 (28%), Positives = 68/174 (39%), Gaps = 32/174 (18%)
Query: 471 ASKSRIFRASDLVRGPLLGQGFFGQVYR----VTHRETGEVMV--LKELYRVDEEAEKNF 524
S + + DL LG G FG V R +T V V LK EA +F
Sbjct: 9 QSLTCLIGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDF 68
Query: 525 LKESKQGLIYLIDLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYI 584
++E V + SL H N+IR GV+ + +VTE
Sbjct: 69 IRE-------------------------VNAMHSLDHRNLIRLYGVVLTP-PMKMVTELA 102
Query: 585 AGGTLKELLQDPGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVRE 638
G+L + L+ G +A +A GM YL S IHRDL ++N L+
Sbjct: 103 PLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLAT 156
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 114 bits (287), Expect = 3e-27
Identities = 51/174 (29%), Positives = 80/174 (45%), Gaps = 37/174 (21%)
Query: 480 SDLVRGPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLG 539
L LGQG FG+V+ T T V + K L + + + FL+E++
Sbjct: 184 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAI-KTL-KPGTMSPEAFLQEAQ---------- 231
Query: 540 SHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDP-GQ 598
V++ L H +++ V+ ++ +VTEY++ G+L + L+ G+
Sbjct: 232 ---------------VMKKLRHEKLVQLYAVVSEEPIY-IVTEYMSKGSLLDFLKGETGK 275
Query: 599 PLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVRE-----VGSGFDFHL 647
L Q V+ A IA+GM Y+ MN +HRDL + N LV E V DF L
Sbjct: 276 YLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVA---DFGL 326
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase;
HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A*
2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Length = 327
Score = 112 bits (281), Expect = 3e-27
Identities = 47/188 (25%), Positives = 73/188 (38%), Gaps = 46/188 (24%)
Query: 477 FRASDLVRGPLLGQGFFGQVYR----VTHRETGEVMV----LKELYRVDEEAEKNFLKES 528
++ LG G FG+VY + + V L E+ +E + FL E
Sbjct: 27 VPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELD--FLME- 83
Query: 529 KQGLIYLIDLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGT 588
++ +H N++R IGV + ++ E +AGG
Sbjct: 84 ------------------------ALIISKFNHQNIVRCIGVSLQSLPRFILMELMAGGD 119
Query: 589 LKELLQD------PGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVREVGSG 642
LK L++ L ++ ARDIA G YL + IHRD+ ++NCL+ G G
Sbjct: 120 LKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPG 179
Query: 643 F-----DF 645
DF
Sbjct: 180 RVAKIGDF 187
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive
kinase, HER3, ATP-binding, cell membrane, membrane,
nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB:
3lmg_A*
Length = 325
Score = 112 bits (281), Expect = 3e-27
Identities = 37/174 (21%), Positives = 77/174 (44%), Gaps = 35/174 (20%)
Query: 472 SKSRIFRASDLVRGPLLGQGFFGQVYR---VTHRETGEVMV----LKELYRVDEEAEKNF 524
+RIF+ ++L + +LG G FG V++ + E+ ++ V +++ ++ +
Sbjct: 5 VLARIFKETELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKS--GRQSFQAV 62
Query: 525 LKESKQGLIYLIDLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYI 584
+ + SL H +++R +G+ L LVT+Y+
Sbjct: 63 TDH-------------------------MLAIGSLDHAHIVRLLGLCPGS-SLQLVTQYL 96
Query: 585 AGGTLKELLQDPGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVRE 638
G+L + ++ L +N+ IA GM YL ++HR+L ++N L++
Sbjct: 97 PLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLEEHGMVHRNLAARNVLLKS 150
>3mdy_A Bone morphogenetic protein receptor type-1B; complex
(isomerase-protein kinase), receptor serine/threonin
structural genomics consortium, SGC; HET: LDN; 2.05A
{Homo sapiens}
Length = 337
Score = 111 bits (279), Expect = 6e-27
Identities = 42/205 (20%), Positives = 76/205 (37%), Gaps = 43/205 (20%)
Query: 446 YNSPPKSLRPACDLSRTRSRSFRVEASKSRIFRASDLVRGPLLGQGFFGQVYRVTHRETG 505
Y P +SLR + S++ + R A + +G+G +G+V+ R
Sbjct: 4 YIPPGESLRDLIEQSQSSGSGSGLPLLVQRTI-AKQIQMVKQIGKGRYGEVWMGKWRGE- 61
Query: 506 EVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLINNLHCFSQVAVLRSLHHHNVI 565
+V V K E ++ +E++ + + H N++
Sbjct: 62 KVAV-KVF---FTTEEASWFRETE-----------------------IYQTVLMRHENIL 94
Query: 566 RFIGVLYKDRKLN----LVTEYIAGGTLKELLQDPGQPLPWGQRVNFARDIAAGMTYLHS 621
FI K L+T+Y G+L + L+ L + A +G+ +LH+
Sbjct: 95 GFIAADIKGTGSWTQLYLITDYHENGSLYDYLKST--TLDAKSMLKLAYSSVSGLCHLHT 152
Query: 622 MNL--------IHRDLNSQNCLVRE 638
HRDL S+N LV++
Sbjct: 153 EIFSTQGKPAIAHRDLKSKNILVKK 177
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 114 bits (287), Expect = 7e-27
Identities = 51/174 (29%), Positives = 81/174 (46%), Gaps = 37/174 (21%)
Query: 480 SDLVRGPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLG 539
L LGQG FG+V+ T T V + K L + + + FL+E++
Sbjct: 267 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAI-KTL-KPGTMSPEAFLQEAQ---------- 314
Query: 540 SHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDP-GQ 598
V++ L H +++ V+ ++ + +VTEY++ G+L + L+ G+
Sbjct: 315 ---------------VMKKLRHEKLVQLYAVVSEEP-IYIVTEYMSKGSLLDFLKGETGK 358
Query: 599 PLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVRE-----VGSGFDFHL 647
L Q V+ A IA+GM Y+ MN +HRDL + N LV E V DF L
Sbjct: 359 YLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVA---DFGL 409
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline,
aortic aneurysm, ATP-binding, craniosynostosis, disease
mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens}
PDB: 1vjy_A* 3gxl_A* 3hmm_A* 2wot_A* 2wou_A* 1py5_A*
1rw8_A*
Length = 303
Score = 110 bits (276), Expect = 9e-27
Identities = 41/172 (23%), Positives = 68/172 (39%), Gaps = 42/172 (24%)
Query: 479 ASDLVRGPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDL 538
A +V +G+G FG+V+R R EV V K E+++ +E++
Sbjct: 2 ARTIVLQESIGKGRFGEVWRGKWRGE-EVAV-KIF---SSREERSWFREAE--------- 47
Query: 539 GSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLN----LVTEYIAGGTLKELLQ 594
+ L H N++ FI KD LV++Y G+L + L
Sbjct: 48 --------------IYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLN 93
Query: 595 DPGQPLPWGQRVNFARDIAAGMTYLHS--------MNLIHRDLNSQNCLVRE 638
+ + A A+G+ +LH + HRDL S+N LV++
Sbjct: 94 R--YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKK 143
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS
autophosphorylation conformation, recept tyrosine
kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo
sapiens}
Length = 298
Score = 110 bits (276), Expect = 1e-26
Identities = 35/166 (21%), Positives = 67/166 (40%), Gaps = 34/166 (20%)
Query: 480 SDLVRGPLLGQGFFGQVYR--VTHRETGEVMV----LKELYRVDEEAEKNFLKESKQGLI 533
++G+G FG VY + + L + + + + FL+E
Sbjct: 21 VVTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRIT--EMQQVEAFLREG----- 73
Query: 534 YLIDLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGV-LYKDRKLNLVTEYIAGGTLKEL 592
++R L+H NV+ IG+ L + +++ Y+ G L +
Sbjct: 74 --------------------LLMRGLNHPNVLALIGIMLPPEGLPHVLLPYMCHGDLLQF 113
Query: 593 LQDPGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVRE 638
++ P + ++F +A GM YL +HRDL ++NC++ E
Sbjct: 114 IRSPQRNPTVKDLISFGLQVARGMEYLAEQKFVHRDLAARNCMLDE 159
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC,
protein kinase, transfe; HET: LDN FLC; 1.82A {Homo
sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Length = 301
Score = 109 bits (275), Expect = 1e-26
Identities = 40/172 (23%), Positives = 68/172 (39%), Gaps = 42/172 (24%)
Query: 479 ASDLVRGPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDL 538
A D+ +G+G +G+V+R + + V V K EK++ +E++
Sbjct: 7 ARDITLLECVGKGRYGEVWRGSWQGE-NVAV-KIF---SSRDEKSWFRETE--------- 52
Query: 539 GSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLN----LVTEYIAGGTLKELLQ 594
+ L H N++ FI R + L+T Y G+L + LQ
Sbjct: 53 --------------LYNTVMLRHENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQ 98
Query: 595 DPGQPLPWGQRVNFARDIAAGMTYLHS--------MNLIHRDLNSQNCLVRE 638
L + IA+G+ +LH + HRDL S+N LV++
Sbjct: 99 L--TTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKK 148
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein
kinase), receptor serine/threonine kinase; 2.60A {Homo
sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A*
3kcf_A*
Length = 342
Score = 110 bits (277), Expect = 1e-26
Identities = 42/175 (24%), Positives = 70/175 (40%), Gaps = 42/175 (24%)
Query: 479 ASDLVRGPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDL 538
A +V +G+G FG+V+R R EV V K E+++ +E++
Sbjct: 41 ARTIVLQESIGKGRFGEVWRGKWRGE-EVAV-KIF---SSREERSWFREAE--------- 86
Query: 539 GSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLN----LVTEYIAGGTLKELLQ 594
+ L H N++ FI KD LV++Y G+L + L
Sbjct: 87 --------------IYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLN 132
Query: 595 DPGQPLPWGQRVNFARDIAAGMTYLHS--------MNLIHRDLNSQNCLVREVGS 641
+ + A A+G+ +LH + HRDL S+N LV++ G+
Sbjct: 133 R--YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGT 185
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase,
metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Length = 295
Score = 108 bits (273), Expect = 2e-26
Identities = 35/179 (19%), Positives = 68/179 (37%), Gaps = 27/179 (15%)
Query: 460 SRTRSRSFRVEASKSRIFRASDLVRGPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEE 519
R+ + + +LG+G +G VY + +KE
Sbjct: 2 MRSTEEGDCESDLLEYDYEYDENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKE------- 54
Query: 520 AEKNFLKESKQGLIYLIDLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNL 579
I LH ++A+ + L H N+++++G ++ + +
Sbjct: 55 ----------------IPERDSRYSQPLH--EEIALHKHLKHKNIVQYLGSFSENGFIKI 96
Query: 580 VTEYIAGGTLKELLQDPGQPLPWGQRV--NFARDIAAGMTYLHSMNLIHRDLNSQNCLV 636
E + GG+L LL+ PL ++ + + I G+ YLH ++HRD+ N L+
Sbjct: 97 FMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQIVHRDIKGDNVLI 155
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo
sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A*
3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A*
3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A*
3ad6_A* 3kmm_A* 1qpd_A* ...
Length = 279
Score = 108 bits (272), Expect = 2e-26
Identities = 44/177 (24%), Positives = 75/177 (42%), Gaps = 37/177 (20%)
Query: 480 SDLVRGPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLG 539
L LG G FG+V+ + +V V K L + + FL E+
Sbjct: 13 ETLKLVERLGAGQFGEVWMGYYNGHTKVAV-KSL-KQGSMSPDAFLAEAN---------- 60
Query: 540 SHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDP-GQ 598
+++ L H ++R V+ ++ ++TEY+ G+L + L+ P G
Sbjct: 61 ---------------LMKQLQHQRLVRLYAVVTQEPIY-IITEYMENGSLVDFLKTPSGI 104
Query: 599 PLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVRE-----VGSGFDFHLGQI 650
L + ++ A IA GM ++ N IHRDL + N LV + + DF L ++
Sbjct: 105 KLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIA---DFGLARL 158
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET:
ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A*
2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A*
2jko_A* 2jkk_A*
Length = 281
Score = 108 bits (272), Expect = 2e-26
Identities = 33/165 (20%), Positives = 62/165 (37%), Gaps = 34/165 (20%)
Query: 480 SDLVRGPLLGQGFFGQVYR--VTHRETGEVMV----LKELYRVDEEAEKNFLKESKQGLI 533
+ G +G+G FG V++ E + V K + + FL+E
Sbjct: 15 ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCT--SDSVREKFLQE------ 66
Query: 534 YLIDLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELL 593
+R H ++++ IGV+ ++ ++ E G L+ L
Sbjct: 67 -------------------ALTMRQFDHPHIVKLIGVITENPVW-IIMELCTLGELRSFL 106
Query: 594 QDPGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVRE 638
Q L + +A ++ + YL S +HRD+ ++N LV
Sbjct: 107 QVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSS 151
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor,
ATP-binding, nucleotide-binding, oncogene, TRAN; HET:
B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A*
1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A*
3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A*
3oy3_A* 2hiw_A* 2v7a_A* ...
Length = 288
Score = 108 bits (272), Expect = 2e-26
Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 33/163 (20%)
Query: 480 SDLVRGPLLGQGFFGQVYR-VTHRETGEVMV--LKELYRVDEEAEKNFLKESKQGLIYLI 536
+D+ LG G +G+VY V + + V V LKE D + FLKE
Sbjct: 13 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE----DTMEVEEFLKE--------- 59
Query: 537 DLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDP 596
AV++ + H N+++ +GV ++ ++TE++ G L + L++
Sbjct: 60 ----------------AAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC 103
Query: 597 -GQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVRE 638
Q + + A I++ M YL N IHRDL ++NCLV E
Sbjct: 104 NRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGE 146
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 111 bits (279), Expect = 4e-26
Identities = 47/180 (26%), Positives = 76/180 (42%), Gaps = 43/180 (23%)
Query: 477 FRASDLVRGPLLGQGFFGQVYRVTHRETGEVMV--LKELYRVDEEAEKNFLKESKQGLIY 534
+L +G+G FG V +R +V V +K + + FL E
Sbjct: 190 LNMKELKLLQTIGKGEFGDVMLGDYRGN-KVAVKCIKN-----DATAQAFLAE------- 236
Query: 535 LIDLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDR-KLNLVTEYIAGGTLKELL 593
+V+ L H N+++ +GV+ +++ L +VTEY+A G+L + L
Sbjct: 237 ------------------ASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYL 278
Query: 594 QDP-GQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVRE-----VGSGFDFHL 647
+ L + F+ D+ M YL N +HRDL ++N LV E V DF L
Sbjct: 279 RSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVS---DFGL 335
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci
inhibitory kinase; structural genomics, structural
genomics consortium, SGC; 1.70A {Homo sapiens}
Length = 311
Score = 108 bits (272), Expect = 4e-26
Identities = 37/195 (18%), Positives = 67/195 (34%), Gaps = 26/195 (13%)
Query: 443 DAWYNSPPKSLRPACDLSRTRSRSFRVEASKSRIFRASDLVRGPLLGQGFFGQVYRVTHR 502
+ + P+ + + S T + F+ R LG G +G+V++V +
Sbjct: 21 QSMHQLQPRRVSFRGEASETLQSPGYDPSRPESFFQ-QSFQRLSRLGHGSYGEVFKVRSK 79
Query: 503 ETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLINNLHCFSQVAVLRSLHHH 562
E G + +K G + ++V + H
Sbjct: 80 EDGRLYAVKR-----------------------SMSPFRGPKDRARKLAEVGSHEKVGQH 116
Query: 563 -NVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLPWGQRVNFARDIAAGMTYLHS 621
+R + L L TE G +L++ + G LP Q + RD + +LHS
Sbjct: 117 PCCVRLEQAWEEGGILYLQTEL-CGPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLHS 175
Query: 622 MNLIHRDLNSQNCLV 636
L+H D+ N +
Sbjct: 176 QGLVHLDVKPANIFL 190
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase,
phosphorylation, staurosporine, transferase; HET: STU;
2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Length = 278
Score = 107 bits (270), Expect = 4e-26
Identities = 43/163 (26%), Positives = 72/163 (44%), Gaps = 35/163 (21%)
Query: 480 SDLVRGPLLGQGFFGQVYRVTHRETGEVMV--LKELYRVDEEAEKNFLKESKQGLIYLID 537
+L +G+G FG V +R +V V +K + + FL E
Sbjct: 21 KELKLLQTIGKGEFGDVMLGDYRGN-KVAVKCIKN-----DATAQAFLAE---------- 64
Query: 538 LGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDR-KLNLVTEYIAGGTLKELLQDP 596
+V+ L H N+++ +GV+ +++ L +VTEY+A G+L + L+
Sbjct: 65 ---------------ASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSR 109
Query: 597 -GQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVRE 638
L + F+ D+ M YL N +HRDL ++N LV E
Sbjct: 110 GRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSE 152
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural
genomics, structural genom consortium, SGC, ATP-binding,
membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A
3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Length = 281
Score = 107 bits (270), Expect = 4e-26
Identities = 37/165 (22%), Positives = 71/165 (43%), Gaps = 34/165 (20%)
Query: 480 SDLVRGPLLGQGFFGQVYR--VTHRETGEVMV----LKELYRVDEEAEKNFLKESKQGLI 533
D+V +LG+GFFG+VY T+ + ++ V K+ + ++ F+ E
Sbjct: 12 EDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDC--TLDNKEKFMSE------ 63
Query: 534 YLIDLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELL 593
++++L H ++++ IG++ ++ ++ E G L L
Sbjct: 64 -------------------AVIMKNLDHPHIVKLIGIIEEEPTW-IIMELYPYGELGHYL 103
Query: 594 QDPGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVRE 638
+ L V ++ I M YL S+N +HRD+ +N LV
Sbjct: 104 ERNKNSLKVLTLVLYSLQICKAMAYLESINCVHRDIAVRNILVAS 148
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase
domain, hormone-growth factor complex; 1.50A {Homo
sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A*
1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A*
3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A*
1gag_A* 1irk_A 3bu3_A* ...
Length = 322
Score = 108 bits (271), Expect = 6e-26
Identities = 41/176 (23%), Positives = 68/176 (38%), Gaps = 44/176 (25%)
Query: 480 SDLVRGPLLGQGFFGQVYR----VTHRETGEVMV----LKELYRVDEEAEKNFLKESKQG 531
+ LGQG FG VY ++ E V + E FL E
Sbjct: 25 EKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNE--AASMRERIEFLNE---- 78
Query: 532 LIYLIDLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKE 591
+V++ + H+V+R +GV+ + + ++ E + G LK
Sbjct: 79 ---------------------ASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKS 117
Query: 592 LLQ---------DPGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVRE 638
L+ P + + A +IA GM YL++ +HRDL ++NC+V E
Sbjct: 118 YLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAE 173
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine
kinase, transferase; 1.80A {Rattus norvegicus} SCOP:
d.144.1.7 PDB: 3fpq_A
Length = 290
Score = 106 bits (266), Expect = 1e-25
Identities = 37/159 (23%), Positives = 62/159 (38%), Gaps = 30/159 (18%)
Query: 484 RGPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGL 543
+G+G F VY+ ET + EL ++ K +Q
Sbjct: 30 FDIEIGRGSFKTVYKGLDTETTVEVAWCEL------QDRKLTKSERQRFK---------- 73
Query: 544 INNLHCFSQVAVLRSLHHHNVIRFIG----VLYKDRKLNLVTEYIAGGTLKELLQDPGQP 599
+ +L+ L H N++RF + + + LVTE + GTLK L+
Sbjct: 74 -------EEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRFK-V 125
Query: 600 LPWGQRVNFARDIAAGMTYLHSMN--LIHRDLNSQNCLV 636
+ ++ R I G+ +LH+ +IHRDL N +
Sbjct: 126 MKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFI 164
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET:
824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A*
3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Length = 289
Score = 106 bits (266), Expect = 1e-25
Identities = 35/176 (19%), Positives = 63/176 (35%), Gaps = 33/176 (18%)
Query: 471 ASKSRIFRASDLVRGPLLGQGFFGQVYRVTHRETGEVMVLKE--LYRVDEEAEKNFLKES 528
KSR ++ +G G FG V++ R G + +K E+N L+E
Sbjct: 4 GMKSRY--TTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALRE- 60
Query: 529 KQGLIYLIDLGSHGLINNLHCFSQVAVLRSLHHH-NVIRFIGVLYKDRKLNLVTEYIAGG 587
V L H +V+R+ +D + + EY GG
Sbjct: 61 ------------------------VYAHAVLGQHSHVVRYFSAWAEDDHMLIQNEYCNGG 96
Query: 588 TLKELLQD---PGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVREVG 640
+L + + + + + + G+ Y+HSM+L+H D+ N +
Sbjct: 97 SLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSMSLVHMDIKPSNIFISRTS 152
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo
sapiens} SCOP: d.144.1.7
Length = 287
Score = 106 bits (266), Expect = 2e-25
Identities = 36/156 (23%), Positives = 60/156 (38%), Gaps = 33/156 (21%)
Query: 488 LGQGFFGQVYR-VTHRETGEVMV----LKELYRVDEEAEKNFLKESKQGLIYLIDLGSHG 542
LG G FG V + V ++ V LK+ ++ + ++E
Sbjct: 18 LGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGT--EKADTEEMMRE--------------- 60
Query: 543 LINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLPW 602
++ L + ++R IGV + L LV E GG L + L + +P
Sbjct: 61 ----------AQIMHQLDNPYIVRLIGVC-QAEALMLVMEMAGGGPLHKFLVGKREEIPV 109
Query: 603 GQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVRE 638
++ GM YL N +HRDL ++N L+
Sbjct: 110 SNVAELLHQVSMGMKYLEEKNFVHRDLAARNVLLVN 145
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor;
HET: V4Z; 2.75A {Homo sapiens}
Length = 329
Score = 106 bits (268), Expect = 2e-25
Identities = 52/214 (24%), Positives = 83/214 (38%), Gaps = 50/214 (23%)
Query: 447 NSPPKSLRPACDLSRTRSRSFRVEASKSRIFRASDLVRGPLLGQGFFGQVYR----VTHR 502
+ P + + + + D+V LG+G FG+V+
Sbjct: 8 SLSPTEGKGSGLQGHIIENPQYFSDACVHHIKRRDIVLKWELGEGAFGKVFLAECHNLLP 67
Query: 503 ETGEVMV----LKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLINNLHCFSQVAVLRS 558
E +++V LKE E A ++F +E +L
Sbjct: 68 EQDKMLVAVKALKE---ASESARQDFQRE-------------------------AELLTM 99
Query: 559 LHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQ--------------DPGQPLPWGQ 604
L H +++RF GV + R L +V EY+ G L L+ PL GQ
Sbjct: 100 LQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQ 159
Query: 605 RVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVRE 638
+ A +AAGM YL ++ +HRDL ++NCLV +
Sbjct: 160 LLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQ 193
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase,
integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB:
2j0k_A*
Length = 656
Score = 110 bits (276), Expect = 3e-25
Identities = 33/165 (20%), Positives = 63/165 (38%), Gaps = 34/165 (20%)
Query: 480 SDLVRGPLLGQGFFGQVYR--VTHRETGEVMV----LKELYRVDEEAEKNFLKESKQGLI 533
+ G +G+G FG V++ E + V K + + FL+E+
Sbjct: 390 ERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCT--SDSVREKFLQEA----- 442
Query: 534 YLIDLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELL 593
+R H ++++ IGV+ ++ ++ E G L+ L
Sbjct: 443 --------------------LTMRQFDHPHIVKLIGVITENPVW-IIMELCTLGELRSFL 481
Query: 594 QDPGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVRE 638
Q L + +A ++ + YL S +HRD+ ++N LV
Sbjct: 482 QVRKFSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSS 526
>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase,
neurotrophic tyrosine kinase, receptor-related NTRKR2;
2.90A {Homo sapiens}
Length = 289
Score = 104 bits (263), Expect = 3e-25
Identities = 43/190 (22%), Positives = 68/190 (35%), Gaps = 50/190 (26%)
Query: 472 SKSRIFRASDLVRGPLLGQGFFGQVYR----VTHRETGEVMV----LKELYRVDEEAEKN 523
K + S + LG+ FG+VY+ V LK+ + +
Sbjct: 1 GKLKEISLSAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKA--EGPLREE 58
Query: 524 FLKESKQGLIYLIDLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEY 583
F E + L H NV+ +GV+ KD+ L+++ Y
Sbjct: 59 FRHE-------------------------AMLRARLQHPNVVCLLGVVTKDQPLSMIFSY 93
Query: 584 IAGGTLKELLQ---------------DPGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRD 628
+ G L E L L V+ IAAGM YL S +++H+D
Sbjct: 94 CSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHHVVHKD 153
Query: 629 LNSQNCLVRE 638
L ++N LV +
Sbjct: 154 LATRNVLVYD 163
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1,
LIM domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Length = 101
Score = 98.6 bits (246), Expect = 5e-25
Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 4/94 (4%)
Query: 11 TCAGCLNNIVEDEY-VQALSQEWHTDCFRCSACDVML-DNWYFEKDGLLFCKEDYNGKYG 68
C C I D V ++ WH CFRC+ C L + + KD + C + +
Sbjct: 7 GCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDS 66
Query: 69 EACQNCGQMMSGP--VMVVGDHKFHPECFKCTSC 100
C+ C + + + +H +CF S
Sbjct: 67 PKCKGCFKAIVAGDQNVEYKGTVWHKDCFSGPSS 100
Score = 46.2 bits (110), Expect = 1e-06
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Query: 66 KYGEACQNCGQMMSG--PVMVVGDHKFHPECFKCTSCSCCIGDGESYALVERSILYCGLC 123
C C + + + + +H CF+C C + + E++ + I C C
Sbjct: 3 SGSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLAN-ETFVAKDNKI-LCNKC 60
Query: 124 YKR 126
R
Sbjct: 61 TTR 63
>3v5q_A NT-3 growth factor receptor; kinase domain, kinase,
phosphorylation, transferase-transfer inhibitor complex;
HET: 0F4; 2.20A {Homo sapiens}
Length = 297
Score = 105 bits (263), Expect = 5e-25
Identities = 46/185 (24%), Positives = 74/185 (40%), Gaps = 51/185 (27%)
Query: 477 FRASDLVRGPLLGQGFFGQVYR----VTHRETGEVMV----LKELYRVDEEAEKNFLKES 528
+ D+V LG+G FG+V+ +++V LK+ A K+F +E
Sbjct: 12 IKRRDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKD---PTLAARKDFQRE- 67
Query: 529 KQGLIYLIDLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGT 588
+L +L H ++++F GV L +V EY+ G
Sbjct: 68 ------------------------AELLTNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGD 103
Query: 589 LKELLQ---------------DPGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQN 633
L + L+ L Q ++ A IA+GM YL S + +HRDL ++N
Sbjct: 104 LNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQHFVHRDLATRN 163
Query: 634 CLVRE 638
CLV
Sbjct: 164 CLVGA 168
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2,
autoinhibition, ITAM, hydrogen bonding network, TCR
signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Length = 613
Score = 109 bits (273), Expect = 5e-25
Identities = 38/175 (21%), Positives = 68/175 (38%), Gaps = 33/175 (18%)
Query: 469 VEASKSRIFRASDLVRGPLLGQGFFGQVYR-VTHRETGEVMV----LKELYRVDEEAEKN 523
++ K + R + L+ LG G FG V + V ++ V LK+ ++ +
Sbjct: 325 LKDKKLFLKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGT--EKADTEE 382
Query: 524 FLKESKQGLIYLIDLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEY 583
++E ++ L + ++R IGV + L LV E
Sbjct: 383 MMRE-------------------------AQIMHQLDNPYIVRLIGVC-QAEALMLVMEM 416
Query: 584 IAGGTLKELLQDPGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVRE 638
GG L + L + +P ++ GM YL N +HR+L ++N L+
Sbjct: 417 AGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVHRNLAARNVLLVN 471
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor,
receptor tyrosine kinase, spirocyc kinase domain,
phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus
musculus}
Length = 323
Score = 104 bits (262), Expect = 9e-25
Identities = 44/176 (25%), Positives = 66/176 (37%), Gaps = 43/176 (24%)
Query: 480 SDLVRGPLLGQGFFGQVYR--VTHRETGEVMV----LKELYRVDEEAEKNFLKESKQGLI 533
G +LG+G FG V + + V V LK + E+ FL+E
Sbjct: 23 QQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEE-FLRE------ 75
Query: 534 YLIDLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGV------LYKDRKLNLVTEYIAGG 587
A ++ H +V + +GV + ++ ++ G
Sbjct: 76 -------------------AACMKEFDHPHVAKLVGVSLRSRAKGRLPIPMVILPFMKHG 116
Query: 588 TLKELLQ-----DPGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVRE 638
L L + LP V F DIA GM YL S N IHRDL ++NC++ E
Sbjct: 117 DLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSRNFIHRDLAARNCMLAE 172
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease
mutation, glycoprotein, nucleot binding,
phosphorylation, receptor; HET: ADP; 1.90A {Homo
sapiens} PDB: 3bpr_A* 2p0c_A*
Length = 313
Score = 104 bits (261), Expect = 1e-24
Identities = 44/175 (25%), Positives = 71/175 (40%), Gaps = 42/175 (24%)
Query: 480 SDLVRGPLLGQGFFGQVYR--VTHRETGEVMV----LKELYRVDEEAEKNFLKESKQGLI 533
+ L+ G +LG+G FG V + + + V +K E E+ FL E
Sbjct: 34 NLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEE-FLSE------ 86
Query: 534 YLIDLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDR-----KLNLVTEYIAGGT 588
A ++ H NVIR +GV + K ++ ++ G
Sbjct: 87 -------------------AACMKDFSHPNVIRLLGVCIEMSSQGIPKPMVILPFMKYGD 127
Query: 589 LKELLQ-----DPGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVRE 638
L L + +P + F DIA GM YL + N +HRDL ++NC++R+
Sbjct: 128 LHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNRNFLHRDLAARNCMLRD 182
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A
{Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A*
2p4i_A* 3l8p_A* 2wqb_A*
Length = 327
Score = 103 bits (259), Expect = 2e-24
Identities = 45/183 (24%), Positives = 69/183 (37%), Gaps = 48/183 (26%)
Query: 477 FRASDLVRGPLLGQGFFGQVYR-VTHRETGEVMV----LKELYRVDEEAEKNFLKESKQG 531
+D+ ++G+G FGQV + ++ + +KE ++ ++F E
Sbjct: 22 LDWNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYA--SKDDHRDFAGE---- 75
Query: 532 LIYLIDLGSHGLINNLHCFSQVAVLRSLHHH-NVIRFIGVLYKDRKLNLVTEYIAGGTLK 590
+ VL L HH N+I +G L L EY G L
Sbjct: 76 ---------------------LEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLL 114
Query: 591 ELLQ---------------DPGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCL 635
+ L+ L Q ++FA D+A GM YL IHRDL ++N L
Sbjct: 115 DFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNIL 174
Query: 636 VRE 638
V E
Sbjct: 175 VGE 177
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC,
transferase, protein KI; HET: GVD; 1.95A {Homo sapiens}
PDB: 3q4t_A* 2qlu_A*
Length = 322
Score = 103 bits (258), Expect = 3e-24
Identities = 35/176 (19%), Positives = 68/176 (38%), Gaps = 44/176 (25%)
Query: 477 FRASDLVRGPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLI 536
F++ L + +G FG V++ V V K + ++++ E +
Sbjct: 21 FQSMPLQLLEVKARGRFGCVWKAQLLNE-YVAV-KIF---PIQDKQSWQNEYE------- 68
Query: 537 DLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLN----LVTEYIAGGTLKEL 592
V L + H N+++FIG + ++ L+T + G+L +
Sbjct: 69 ----------------VYSLPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDF 112
Query: 593 LQDPGQPLPWGQRVNFARDIAAGMTYLHSMNL----------IHRDLNSQNCLVRE 638
L+ + W + + A +A G+ YLH HRD+ S+N L++
Sbjct: 113 LK--ANVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKN 166
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism,
metal-binding, cell cycle kinase, mitosis, cytoplasm,
magnesium, transferase; 2.10A {Homo sapiens} PDB:
2wqn_A*
Length = 310
Score = 102 bits (257), Expect = 4e-24
Identities = 33/156 (21%), Positives = 67/156 (42%), Gaps = 31/156 (19%)
Query: 487 LLGQGFFGQVYRVTHRETGEVMVLKELY---RVDEEAEKNFLKESKQGLIYLIDLGSHGL 543
+G+G F +VYR G + LK++ +D +A + +KE
Sbjct: 39 KIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKE---------------- 82
Query: 544 INNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQD---PGQPL 600
+ +L+ L+H NVI++ +D +LN+V E G L +++ + +
Sbjct: 83 ---------IDLLKQLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLI 133
Query: 601 PWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLV 636
P + + + + ++HS ++HRD+ N +
Sbjct: 134 PERTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFI 169
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation,
signal transduction, MASS spectrometry, transferase;
2.05A {Rattus norvegicus} SCOP: d.144.1.7
Length = 343
Score = 102 bits (257), Expect = 5e-24
Identities = 43/190 (22%), Positives = 74/190 (38%), Gaps = 58/190 (30%)
Query: 480 SDLVRGPLLGQGFFGQVYR----VTHRETGEVMV----LKELYRVDEEAEKNFLKESKQG 531
+++ +G+G FG+V++ MV LKE + + +F +E
Sbjct: 47 NNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEA--SADMQADFQRE---- 100
Query: 532 LIYLIDLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKE 591
A++ + N+++ +GV + + L+ EY+A G L E
Sbjct: 101 ---------------------AALMAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNE 139
Query: 592 LLQ-----------------------DPGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRD 628
L+ PL +++ AR +AAGM YL +HRD
Sbjct: 140 FLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRD 199
Query: 629 LNSQNCLVRE 638
L ++NCLV E
Sbjct: 200 LATRNCLVGE 209
>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo
sapiens}
Length = 350
Score = 102 bits (257), Expect = 6e-24
Identities = 34/153 (22%), Positives = 65/153 (42%), Gaps = 28/153 (18%)
Query: 487 LLGQGFFGQVYRVTHRETGEVMVLKE--LYRVDEEAEKNFLKESKQGLIYLIDLGSHGLI 544
+G+G FG+ V E G V+KE + R+ + + +E
Sbjct: 31 KIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRRE----------------- 73
Query: 545 NNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQD-PGQPLPWG 603
VAVL ++ H N++++ ++ L +V +Y GG L + + G
Sbjct: 74 --------VAVLANMKHPNIVQYRESFEENGSLYIVMDYCEGGDLFKRINAQKGVLFQED 125
Query: 604 QRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLV 636
Q +++ I + ++H ++HRD+ SQN +
Sbjct: 126 QILDWFVQICLALKHVHDRKILHRDIKSQNIFL 158
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen
typrosine kinase, active conformation, structural
genomics, structural genomix; HET: STI; 1.57A {Homo
sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A*
3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A*
3vf9_A*
Length = 291
Score = 101 bits (254), Expect = 6e-24
Identities = 36/168 (21%), Positives = 58/168 (34%), Gaps = 33/168 (19%)
Query: 476 IFRASDLVRGPLLGQGFFGQVYR-VTHRETGEVMV----LKELYRVDEEAEKNFLKESKQ 530
+ R + LG G FG V + + V LK D + L E
Sbjct: 13 LDRKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEA-NDPALKDELLAE--- 68
Query: 531 GLIYLIDLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLK 590
V++ L + ++R IG+ + LV E G L
Sbjct: 69 ----------------------ANVMQQLDNPYIVRMIGICEAE-SWMLVMEMAELGPLN 105
Query: 591 ELLQDPGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVRE 638
+ LQ + + + ++ GM YL N +HRDL ++N L+
Sbjct: 106 KYLQQ-NRHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVT 152
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural
genomics, structural genomics consortium, ATP-binding,
disease mutation; HET: ADP; 2.35A {Homo sapiens}
Length = 336
Score = 100 bits (251), Expect = 2e-23
Identities = 43/173 (24%), Positives = 63/173 (36%), Gaps = 44/173 (25%)
Query: 480 SDLVRGPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLG 539
+L L+G+G +G VY+ + E V V K +NF+ E IY
Sbjct: 13 DNLKLLELIGRGRYGAVYKGSLDER-PVAV-K---VFSFANRQNFINEKN---IYR---- 60
Query: 540 SHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKD-----RKLNLVTEYIAGGTLKELLQ 594
+ + H N+ RFI + + LV EY G+L + L
Sbjct: 61 ----------------VPLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLS 104
Query: 595 DPGQPLPWGQRVNFARDIAAGMTYLHSMNL---------IHRDLNSQNCLVRE 638
W A + G+ YLH+ HRDLNS+N LV+
Sbjct: 105 L--HTSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKN 155
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding,
lipoprotein, myristate, PA phosphorylation; HET: STU;
2.6A {Homo sapiens}
Length = 317
Score = 97.8 bits (244), Expect = 2e-22
Identities = 32/157 (20%), Positives = 56/157 (35%), Gaps = 32/157 (20%)
Query: 487 LLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLINN 546
LG+G F V V G LK + +++ + +E
Sbjct: 36 KLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQRE------------------- 76
Query: 547 LHCFSQVAVLRSLHHHNVIRFIGVLYKDR----KLNLVTEYIAGGTLKELLQ---DPGQP 599
+ R +H N++R + ++R + L+ + GTL ++ D G
Sbjct: 77 ------ADMHRLFNHPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNF 130
Query: 600 LPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLV 636
L Q + I G+ +H+ HRDL N L+
Sbjct: 131 LTEDQILWLLLGICRGLEAIHAKGYAHRDLKPTNILL 167
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 81
Score = 90.6 bits (225), Expect = 2e-22
Identities = 35/75 (46%), Positives = 47/75 (62%)
Query: 57 LFCKEDYNGKYGEACQNCGQMMSGPVMVVGDHKFHPECFKCTSCSCCIGDGESYALVERS 116
+DY GK+GE C C +M+GP MV G+ K+HPECF C SC I DG++YALV+ +
Sbjct: 4 GSSGKDYWGKFGEFCHGCSLLMTGPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHA 63
Query: 117 ILYCGLCYKRQMQPL 131
LYCG C+ +
Sbjct: 64 TLYCGKCHNEVVSGP 78
Score = 57.9 bits (140), Expect = 7e-11
Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 12 CAGCLNNIVEDEYVQALSQEWHTDCFRCSACDVML---DNWYFEKDGLLFCKEDYNGKYG 68
C GC + ++ A ++H +CF C +C V++ D + + L+C + +N
Sbjct: 18 CHGCSLLMTG-PFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVS 76
Query: 69 EACQ 72
Sbjct: 77 GPSS 80
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting
of N- and C-lobes, transferase; HET: PTR ACP; 1.80A
{Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A*
2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A*
3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A*
3js2_A* 3ky2_A ...
Length = 334
Score = 97.7 bits (244), Expect = 2e-22
Identities = 44/185 (23%), Positives = 70/185 (37%), Gaps = 53/185 (28%)
Query: 480 SDLVRGPLLGQGFFGQVYR------VTHRETGEVMV----LKELYRVDEEAEKNFLKESK 529
L G LG+G FGQV + V V LK+ E+ + + E
Sbjct: 35 DKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKD--DATEKDLSDLVSE-- 90
Query: 530 QGLIYLIDLGSHGLINNLHCFSQVAVLRSLHHH-NVIRFIGVLYKDRKLNLVTEYIAGGT 588
+ +++ + H N+I +G +D L ++ EY + G
Sbjct: 91 -----------------------MEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGN 127
Query: 589 LKELLQ---------------DPGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQN 633
L+E L+ P + + + V+ +A GM YL S IHRDL ++N
Sbjct: 128 LREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARN 187
Query: 634 CLVRE 638
LV E
Sbjct: 188 VLVTE 192
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein
serine/threonine kinase, S based drug design, MAP3K14,
transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A*
4g3c_A 4dn5_A*
Length = 336
Score = 97.5 bits (243), Expect = 3e-22
Identities = 39/210 (18%), Positives = 80/210 (38%), Gaps = 32/210 (15%)
Query: 433 ARVLSSRNRRDAWYNSPPKSLRP-ACDLSRTRSRSFRVEASKSRIFRASDLVRGPLLGQG 491
A L+S + + ++ + L P D + P +G+G
Sbjct: 10 AHSLASLAKTWSSGSAKLQRLGPETEDNEGVLLTEKLKPVDYEYREEVHWMTHQPRVGRG 69
Query: 492 FFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLINNLHCFS 551
FG+V+R+ ++TG +K+ V L+ +
Sbjct: 70 SFGEVHRMKDKQTGFQCAVKK---VR-------LEVFRV--------------------E 99
Query: 552 QVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLPWGQRVNFARD 611
++ L ++ G + + +N+ E + GG+L +L++ G LP + + +
Sbjct: 100 ELVACAGLSSPRIVPLYGAVREGPWVNIFMELLEGGSLGQLIKQMG-CLPEDRALYYLGQ 158
Query: 612 IAAGMTYLHSMNLIHRDLNSQNCLVREVGS 641
G+ YLH+ ++H D+ + N L+ GS
Sbjct: 159 ALEGLEYLHTRRILHGDVKADNVLLSSDGS 188
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal
transduction, acid starvation, starvation stress
response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A*
1zyd_A* 1zyc_A* 1zxe_A
Length = 303
Score = 96.6 bits (241), Expect = 4e-22
Identities = 43/170 (25%), Positives = 62/170 (36%), Gaps = 39/170 (22%)
Query: 479 ASDLVRGPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDL 538
ASD +LGQG FGQV + + +K++ R EE L E
Sbjct: 5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKI-RHTEEKLSTILSE----------- 52
Query: 539 GSHGLINNLHCFSQVAVLRSLHHHNVIRFIGV-------------LYKDRKLNLVTEYIA 585
V +L SL+H V+R+ + K L + EY
Sbjct: 53 --------------VMLLASLNHQYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCE 98
Query: 586 GGTLKELLQDPGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCL 635
GTL +L+ + R I ++Y+HS +IHRDL N
Sbjct: 99 NGTLYDLIHSENLNQQRDEYWRLFRQILEALSYIHSQGIIHRDLKPMNIF 148
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting
of N- and C-lobes, transferase; 2.40A {Homo sapiens}
SCOP: d.144.1.7 PDB: 1xr0_A
Length = 370
Score = 97.8 bits (244), Expect = 4e-22
Identities = 44/185 (23%), Positives = 70/185 (37%), Gaps = 53/185 (28%)
Query: 480 SDLVRGPLLGQGFFGQVYR------VTHRETGEVMV----LKELYRVDEEAEKNFLKESK 529
L G LG+G FGQV + V V LK+ E+ + + E
Sbjct: 81 DKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKD--DATEKDLSDLVSE-- 136
Query: 530 QGLIYLIDLGSHGLINNLHCFSQVAVLRSLHHH-NVIRFIGVLYKDRKLNLVTEYIAGGT 588
+ +++ + H N+I +G +D L ++ EY + G
Sbjct: 137 -----------------------MEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGN 173
Query: 589 LKELLQ---------------DPGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQN 633
L+E L+ P + + + V+ +A GM YL S IHRDL ++N
Sbjct: 174 LREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARN 233
Query: 634 CLVRE 638
LV E
Sbjct: 234 VLVTE 238
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1;
LIM-interaction-domain (LID), metal binding protein; NMR
{Mus musculus} SCOP: g.39.1.3 g.39.1.3
Length = 114
Score = 90.9 bits (225), Expect = 5e-22
Identities = 25/101 (24%), Positives = 37/101 (36%), Gaps = 7/101 (6%)
Query: 9 ILTCAGCLNNIVEDEYVQALSQEWHTDCFRCSACDVMLDN---WYFEKDGLLFCKEDYNG 65
+LTC GC NI + +++A+ Q WH DC C C L + K G C+ DY
Sbjct: 3 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 62
Query: 66 KYGEACQNCGQMM----SGPVMVVGDHKFHPECFKCTSCSC 102
G P ++ G+ E +
Sbjct: 63 LGGSGGHMGSGGDVMVVGEPTLMGGEFGDEDERLITRLENT 103
Score = 44.3 bits (104), Expect = 8e-06
Identities = 15/73 (20%), Positives = 23/73 (31%), Gaps = 1/73 (1%)
Query: 71 CQNCGQ-MMSGPVMVVGDHKFHPECFKCTSCSCCIGDGESYALVERSILYCGLCYKRQMQ 129
C C Q + + D +H +C C C C +G+ + C Y R
Sbjct: 6 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGG 65
Query: 130 PLGRAKDAAFPMM 142
G M+
Sbjct: 66 SGGHMGSGGDVMV 78
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell
cycle progression, phosphorylation, disease mutation,
nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB:
4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Length = 302
Score = 96.2 bits (240), Expect = 5e-22
Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 25/153 (16%)
Query: 488 LGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLINNL 547
LG G FG+VY+ ++ETG + K + EE ++++ E
Sbjct: 27 LGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVE-------------------- 66
Query: 548 HCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLPWGQRVN 607
+ +L + H +++ +G Y D KL ++ E+ GG + ++ + + L Q
Sbjct: 67 -----IEILATCDHPYIVKLLGAYYHDGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQV 121
Query: 608 FARDIAAGMTYLHSMNLIHRDLNSQNCLVREVG 640
R + + +LHS +IHRDL + N L+ G
Sbjct: 122 VCRQMLEALNFLHSKRIIHRDLKAGNVLMTLEG 154
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET;
nucleotide-binding, hirschsprung disease,
phosphorylation, disease mutation; HET: ACK; 2.00A {Homo
sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A*
2ivv_A*
Length = 314
Score = 95.8 bits (239), Expect = 8e-22
Identities = 50/190 (26%), Positives = 73/190 (38%), Gaps = 58/190 (30%)
Query: 480 SDLVRGPLLGQGFFGQVYRVT----HRETGEVMV----LKELYRVDEEAEKNFLKESKQG 531
+LV G LG+G FG+V + T G V LKE ++ L E
Sbjct: 23 KNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKE--NASPSELRDLLSE---- 76
Query: 532 LIYLIDLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKE 591
VL+ ++H +VI+ G +D L L+ EY G+L+
Sbjct: 77 ---------------------FNVLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRG 115
Query: 592 LLQ-----------------------DPGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRD 628
L+ + L G ++FA I+ GM YL M L+HRD
Sbjct: 116 FLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEMKLVHRD 175
Query: 629 LNSQNCLVRE 638
L ++N LV E
Sbjct: 176 LAARNILVAE 185
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain,
transferase, transferase-transferase inhibito; HET: 07J;
2.80A {Homo sapiens}
Length = 382
Score = 97.1 bits (242), Expect = 8e-22
Identities = 46/185 (24%), Positives = 70/185 (37%), Gaps = 53/185 (28%)
Query: 480 SDLVRGPLLGQGFFGQVYR------VTHRETGEVMV----LKELYRVDEEAEKNFLKESK 529
LV G LG+G FGQV + V LK + ++ + E
Sbjct: 69 DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSD--LISE-- 124
Query: 530 QGLIYLIDLGSHGLINNLHCFSQVAVLRSLHHH-NVIRFIGVLYKDRKLNLVTEYIAGGT 588
+ +++ + H N+I +G +D L ++ EY + G
Sbjct: 125 -----------------------MEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGN 161
Query: 589 LKELLQ---------------DPGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQN 633
L+E LQ +P + L V+ A +A GM YL S IHRDL ++N
Sbjct: 162 LREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARN 221
Query: 634 CLVRE 638
LV E
Sbjct: 222 VLVTE 226
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 80
Score = 88.6 bits (220), Expect = 1e-21
Identities = 23/69 (33%), Positives = 36/69 (52%)
Query: 3 DSETPEILTCAGCLNNIVEDEYVQALSQEWHTDCFRCSACDVMLDNWYFEKDGLLFCKED 62
+ CAGC I + + AL ++WH CF+C C V+L Y KDG+ +C+ D
Sbjct: 9 PIKIRGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTGEYISKDGVPYCESD 68
Query: 63 YNGKYGEAC 71
Y+ ++G
Sbjct: 69 YHAQFGSGP 77
Score = 47.0 bits (112), Expect = 4e-07
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 4/67 (5%)
Query: 62 DYNGKYGEACQNCGQM-MSGPVMVVGDHKFHPECFKCTSCSCCIGDGESYALVERSILYC 120
+ C C + G ++ D ++H CFKC +CS + Y + YC
Sbjct: 9 PIKIRGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG--EYISKDGVP-YC 65
Query: 121 GLCYKRQ 127
Y Q
Sbjct: 66 ESDYHAQ 72
>2a19_B Interferon-induced, double-stranded RNA-activated kinase;
transferase, protein biosynthesis, protein synthesis
transferase complex; HET: TPO ANP; 2.50A {Homo sapiens}
PDB: 2a1a_B*
Length = 284
Score = 94.7 bits (236), Expect = 1e-21
Identities = 41/164 (25%), Positives = 62/164 (37%), Gaps = 46/164 (28%)
Query: 487 LLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLINN 546
L+G G FGQV++ HR G+ V+K V EK +E
Sbjct: 18 LIGSGGFGQVFKAKHRIDGKTYVIKR---VKYNNEK-AERE------------------- 54
Query: 547 LHCFSQVAVLRSLHHHNVIRFIG----------------VLYKDRKLNLVTEYIAGGTLK 590
V L L H N++ + G K + L + E+ GTL+
Sbjct: 55 ------VKALAKLDHVNIVHYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLE 108
Query: 591 ELLQD-PGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQN 633
+ ++ G+ L + I G+ Y+HS LI+RDL N
Sbjct: 109 QWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLINRDLKPSN 152
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma
gondii} PDB: 3q5z_A*
Length = 371
Score = 96.3 bits (239), Expect = 1e-21
Identities = 30/235 (12%), Positives = 46/235 (19%), Gaps = 17/235 (7%)
Query: 429 GPVAARVLSSRNRRDAWYNSPPKSLRPACDLSRTRSRSFRVEASKSRIFRAS----DLVR 484
G R L R Y PA + + + A + S L
Sbjct: 7 GDSFMRDLLKREEELIGYCREEALKEPAAMVEAVTATVWPQNAETTVDSLLSQGERKLKL 66
Query: 485 GPLLGQGFFGQVYRVTHRETGEVMVLKELY---RVDEEAEKNFLKESKQGLIYLIDLGSH 541
L G V+ V E E LK + + L+
Sbjct: 67 VEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEA-TFAAARLLGESPE 125
Query: 542 GLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLN--LVTEYIAG--GTLKELLQDP- 596
+ + + N L+ + L L
Sbjct: 126 EARDRRRLLLPSDAVAVQSQPPFAQLSPGQDDYAVANYLLLMPAASVDLELLFSTLDFVY 185
Query: 597 --GQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVREVGSGF--DFHL 647
+ L S L+H N + G D
Sbjct: 186 VFRGDEGILALHILTAQLIRLAANLQSKGLVHGHFTPDNLFIMPDGRLMLGDVSA 240
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding,
nucleotide-bindi phosphoprotein,
serine/threonine-protein kinase; HET: 537 7PE; 2.88A
{Homo sapiens} PDB: 2zmc_A*
Length = 390
Score = 96.4 bits (240), Expect = 1e-21
Identities = 30/193 (15%), Positives = 65/193 (33%), Gaps = 32/193 (16%)
Query: 448 SPPKSLRPACDLSRTRSRSFRVEASKSRIFRASDLVRGPLLGQGFFGQVYRVTHRETGEV 507
+ + DL A++ + +G G +V++V + E ++
Sbjct: 24 KFERQHMDSPDLGTDDDDKASSSANECISVKGRIYSILKQIGSGGSSKVFQVLN-EKKQI 82
Query: 508 MVLKE--LYRVDEEAEKNFLKESKQGLIYLIDLGSHGLINNLHCFSQVAVLRSLHHHN-- 563
+K L D + ++ E +A L L H+
Sbjct: 83 YAIKYVNLEEADNQTLDSYRNE-------------------------IAYLNKLQQHSDK 117
Query: 564 VIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLPWGQRVNFARDIAAGMTYLHSMN 623
+IR D+ + +V E L L+ + +R ++ +++ + +H
Sbjct: 118 IIRLYDYEITDQYIYMVMEC-GNIDLNSWLKKKK-SIDPWERKSYWKNMLEAVHTIHQHG 175
Query: 624 LIHRDLNSQNCLV 636
++H DL N L+
Sbjct: 176 IVHSDLKPANFLI 188
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase,
ATP-binding, disease mutation, nucleoti binding,
phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB:
3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A*
2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A*
3orn_A* 3os3_A* 3sls_A* 1s9i_A*
Length = 360
Score = 94.9 bits (236), Expect = 3e-21
Identities = 41/183 (22%), Positives = 76/183 (41%), Gaps = 28/183 (15%)
Query: 460 SRTRSRSFRVEASKSRIFRASDLVRGPLLGQGFFGQVYRVTHRETGEVMVLKELYR-VDE 518
R R +F + K + D + LG G G V++V+H+ +G VM K ++ +
Sbjct: 13 QRKRLEAFLTQKQKVGELKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKP 72
Query: 519 EAEKNFLKESKQGLIYLIDLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLN 578
++E + VL + ++ F G Y D +++
Sbjct: 73 AIRNQIIRE-------------------------LQVLHECNSPYIVGFYGAFYSDGEIS 107
Query: 579 LVTEYIAGGTLKELLQDPGQPLPWGQRVNFARDIAAGMTYLHS-MNLIHRDLNSQNCLVR 637
+ E++ GG+L ++L+ G +P + + G+TYL ++HRD+ N LV
Sbjct: 108 ICMEHMDGGSLDQVLKKAG-RIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVN 166
Query: 638 EVG 640
G
Sbjct: 167 SRG 169
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation,
transferase-transferas inhibitor complex; HET: SEP BX7;
1.80A {Homo sapiens}
Length = 319
Score = 93.3 bits (232), Expect = 6e-21
Identities = 29/156 (18%), Positives = 59/156 (37%), Gaps = 28/156 (17%)
Query: 485 GPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLI 544
+LGQG V+R H++TG++ +K
Sbjct: 14 SDILGQGATANVFRGRHKKTGDLFAIKVF-------NNISFLRPVDVQ------------ 54
Query: 545 NNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLN--LVTEYIAGGTLKELLQDPGQPLPW 602
+ VL+ L+H N+++ + + + L+ E+ G+L +L++P
Sbjct: 55 -----MREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGL 109
Query: 603 GQRV--NFARDIAAGMTYLHSMNLIHRDLNSQNCLV 636
+ RD+ GM +L ++HR++ N +
Sbjct: 110 PESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIMR 145
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant,
catalytic domain, synthetic inhibitor, TRAN transferase
inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB:
4g34_A*
Length = 299
Score = 92.8 bits (231), Expect = 6e-21
Identities = 29/162 (17%), Positives = 52/162 (32%), Gaps = 40/162 (24%)
Query: 487 LLGQGFFGQVYRVTHRETGEVMVLKEL-YRVDEEAEKNFLKESKQGLIYLIDLGSHGLIN 545
LG+G FG V+ ++ +K + E A + ++E
Sbjct: 12 CLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMRE------------------ 53
Query: 546 NLHCFSQVAVLRSLHHHNVIRFIGV------------LYKDRKLNLVTEYIAGGTLKELL 593
V L L H ++R+ L + + LK+ +
Sbjct: 54 -------VKALAKLEHPGIVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWM 106
Query: 594 --QDPGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQN 633
+ + ++ IA + +LHS L+HRDL N
Sbjct: 107 NGRCTIEERERSVCLHIFLQIAEAVEFLHSKGLMHRDLKPSN 148
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase,
nucleus, meiosis, mitosis, cytoplasm, metal-binding,
phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB:
2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A*
2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A*
4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Length = 279
Score = 91.9 bits (229), Expect = 8e-21
Identities = 31/162 (19%), Positives = 59/162 (36%), Gaps = 37/162 (22%)
Query: 487 LLGQGFFGQVYRVTHRETGEVMVLKE--LYRVDEEAEKNFLKESKQGLIYLIDLGSHGLI 544
+G G +G+ ++ + G+++V KE + E ++ + E
Sbjct: 13 TIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSE----------------- 55
Query: 545 NNLHCFSQVAVLRSLHHHNVIRFIG--VLYKDRKLNLVTEYIAGGTLKELLQD---PGQP 599
V +LR L H N++R+ + + L +V EY GG L ++ Q
Sbjct: 56 --------VNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQY 107
Query: 600 LPWGQRVNFARDIAAGMTYLHSMNL-----IHRDLNSQNCLV 636
L + + + H + +HRDL N +
Sbjct: 108 LDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFL 149
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain,
kinase inhibitor complex, transferase; HET: 5CN; 1.80A
{Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A*
3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Length = 333
Score = 93.1 bits (232), Expect = 9e-21
Identities = 40/181 (22%), Positives = 65/181 (35%), Gaps = 49/181 (27%)
Query: 480 SDLVRGPLLGQGFFGQVYRVT----HRETGEVMV----LKELYRVDEEAEKNFLKESKQG 531
++L G LG G FG+V T +E + V LK DE+ + E K
Sbjct: 46 NNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEA--LMSELK-- 101
Query: 532 LIYLIDLGSHGLINNLHCFSQVAVLRSLHHH-NVIRFIGVLYKDRKLNLVTEYIAGGTLK 590
++ L H N++ +G + ++TEY G L
Sbjct: 102 -----------------------IMSHLGQHENIVNLLGACTHGGPVLVITEYCCYGDLL 138
Query: 591 ELLQD-------------PGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVR 637
L+ ++F+ +A GM +L S N IHRD+ ++N L+
Sbjct: 139 NFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLT 198
Query: 638 E 638
Sbjct: 199 N 199
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI,
structural genomics, protein structure initiative; HET:
TPO; 2.20A {Homo sapiens}
Length = 314
Score = 92.4 bits (230), Expect = 1e-20
Identities = 36/155 (23%), Positives = 72/155 (46%), Gaps = 29/155 (18%)
Query: 488 LGQGFFGQVYRVTHRETGEVMVLKELYRVD-EEAEKNFLKESKQGLIYLIDLGSHGLINN 546
LG+G +G VY+ H+ETG+++ +K+ V E + +KE
Sbjct: 37 LGEGSYGSVYKAIHKETGQIVAIKQ---VPVESDLQEIIKE------------------- 74
Query: 547 LHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLPWGQRV 606
+++++ +V+++ G +K+ L +V EY G++ ++++ + L +
Sbjct: 75 ------ISIMQQCDSPHVVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRNKTLTEDEIA 128
Query: 607 NFARDIAAGMTYLHSMNLIHRDLNSQNCLVREVGS 641
+ G+ YLH M IHRD+ + N L+ G
Sbjct: 129 TILQSTLKGLEYLHFMRKIHRDIKAGNILLNTEGH 163
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene
homolog; kinase, structure, inhibitor, STI-571, gleevec,
transferase activator; HET: STI; 1.60A {Homo sapiens}
SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Length = 313
Score = 92.3 bits (230), Expect = 1e-20
Identities = 41/185 (22%), Positives = 63/185 (34%), Gaps = 53/185 (28%)
Query: 480 SDLVRGPLLGQGFFGQVYRVT----HRETGEVMV----LKELYRVDEEAEKNFLKESKQG 531
+ L G LG G FG+V T + + V LK + + E
Sbjct: 23 NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKP--SAHLTEREALMSE---- 76
Query: 532 LIYLIDLGSHGLINNLHCFSQVAVLRSLHHH-NVIRFIGVLYKDRKLNLVTEYIAGGTLK 590
+ VL L +H N++ +G ++TEY G L
Sbjct: 77 ---------------------LKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLL 115
Query: 591 ELLQ-----------------DPGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQN 633
L+ D L ++F+ +A GM +L S N IHRDL ++N
Sbjct: 116 NFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARN 175
Query: 634 CLVRE 638
L+
Sbjct: 176 ILLTH 180
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors,
virtual screening, X-RAY CO- crystal analysis,
structure-based drug design (SBDD); HET: MMH; 1.90A
{Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A*
2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A*
3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A*
3lau_A* 2wtv_A* ...
Length = 279
Score = 91.1 bits (227), Expect = 2e-20
Identities = 40/165 (24%), Positives = 71/165 (43%), Gaps = 23/165 (13%)
Query: 472 SKSRIFRASDLVRGPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQG 531
SK R + D G LG+G FG VY +++ ++ LK L++ + EK ++
Sbjct: 1 SKKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFK--AQLEKAGVEH---- 54
Query: 532 LIYLIDLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKE 591
+V + L H N++R G + ++ L+ EY GT+
Sbjct: 55 ----------------QLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYR 98
Query: 592 LLQDPGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLV 636
LQ + + ++A ++Y HS +IHRD+ +N L+
Sbjct: 99 ELQKLS-KFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLL 142
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation,
transferase-transferas inhibitor complex; HET: BX7;
2.60A {Homo sapiens}
Length = 396
Score = 93.0 bits (231), Expect = 2e-20
Identities = 30/162 (18%), Positives = 60/162 (37%), Gaps = 28/162 (17%)
Query: 485 GPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLI 544
+LGQG V+R H++TG++ +K
Sbjct: 14 SDILGQGATANVFRGRHKKTGDLFAIKVF-------NNISFLRPVDVQ------------ 54
Query: 545 NNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLN--LVTEYIAGGTLKELLQDPGQPLPW 602
+ VL+ L+H N+++ + + + L+ E+ G+L +L++P
Sbjct: 55 -----MREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGL 109
Query: 603 GQRV--NFARDIAAGMTYLHSMNLIHRDLNSQNCLVREVGSG 642
+ RD+ GM +L ++HR++ N + G
Sbjct: 110 PESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGEDG 151
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural
genomics, structural genomics consortium, SGC; 1.80A
{Toxoplasma gondii}
Length = 413
Score = 93.2 bits (231), Expect = 2e-20
Identities = 37/236 (15%), Positives = 70/236 (29%), Gaps = 12/236 (5%)
Query: 417 GTTIGCYRGLIKGPVAARVLSSRNRRDAWYNSPPKSLRPACDLSRTRSRSFRVEASKSRI 476
+RG G V L +R + + A L T +
Sbjct: 13 NLYFQGFRGTDPGDVVIEELFNRIPQANVRTTSEYMQSAADSLVSTSLWNTGQPFRVESE 72
Query: 477 F--RASDLVRGPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIY 534
R LVRG +LGQ T +ETGE + Y + + ++ L
Sbjct: 73 LGERPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRL 132
Query: 535 LIDLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYI----AGGTLK 590
+ G + + + I V +R + +++ + L+
Sbjct: 133 RLLRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQ 192
Query: 591 ELLQ------DPGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVREVG 640
+ + L R+ + + LH L+H L + ++ + G
Sbjct: 193 TFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHTYLRPVDIVLDQRG 248
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase
activation, phosphorylation, ATP- binding,
nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Length = 343
Score = 92.1 bits (229), Expect = 2e-20
Identities = 27/157 (17%), Positives = 57/157 (36%), Gaps = 32/157 (20%)
Query: 484 RGPLLGQGFFGQVYRVTHRETGEVMVLKE--LYRVDEEAEKNFLKESKQGLIYLIDLGSH 541
+G G +V++V + E ++ +K L D + ++ E
Sbjct: 13 ILKQIGSGGSSKVFQVLN-EKKQIYAIKYVNLEEADNQTLDSYRNE-------------- 57
Query: 542 GLINNLHCFSQVAVLRSLHHHN--VIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQP 599
+A L L H+ +IR D+ + +V E L L+
Sbjct: 58 -----------IAYLNKLQQHSDKIIRLYDYEITDQYIYMVMEC-GNIDLNSWLKKKK-S 104
Query: 600 LPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLV 636
+ +R ++ +++ + +H ++H DL N L+
Sbjct: 105 IDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLI 141
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros
picked threonine kinase, SGC, structural genomics
consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB:
3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Length = 313
Score = 91.6 bits (228), Expect = 2e-20
Identities = 27/157 (17%), Positives = 57/157 (36%), Gaps = 32/157 (20%)
Query: 484 RGPLLGQGFFGQVYRVTHRETGEVMVLKE--LYRVDEEAEKNFLKESKQGLIYLIDLGSH 541
+G G +V++V + E ++ +K L D + ++ E
Sbjct: 32 ILKQIGSGGSSKVFQVLN-EKKQIYAIKYVNLEEADNQTLDSYRNE-------------- 76
Query: 542 GLINNLHCFSQVAVLRSLHHHN--VIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQP 599
+A L L H+ +IR D+ + +V E L L+
Sbjct: 77 -----------IAYLNKLQQHSDKIIRLYDYEITDQYIYMVMEC-GNIDLNSWLKKKK-S 123
Query: 600 LPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLV 636
+ +R ++ +++ + +H ++H DL N L+
Sbjct: 124 IDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLI 160
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK,
STK18, PSI, structural genomics, protein structure
initiative; HET: ANP; 2.25A {Homo sapiens}
Length = 278
Score = 90.3 bits (225), Expect = 3e-20
Identities = 36/156 (23%), Positives = 56/156 (35%), Gaps = 28/156 (17%)
Query: 484 RGPLLGQGFFGQVYRVTHRETGEVMVLKELYR---VDEEAEKNFLKESKQGLIYLIDLGS 540
G LLG+G F VYR TG + +K + + + E
Sbjct: 15 VGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNE------------- 61
Query: 541 HGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPL 600
V + L H +++ + LV E G + L++ +P
Sbjct: 62 ------------VKIHCQLKHPSILELYNYFEDSNYVYLVLEMCHNGEMNRYLKNRVKPF 109
Query: 601 PWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLV 636
+ +F I GM YLHS ++HRDL N L+
Sbjct: 110 SENEARHFMHQIITGMLYLHSHGILHRDLTLSNLLL 145
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis,
nucleotide-binding, inhibitor, phosphorylation receptor,
transferase, transmembrane; HET: 00J; 1.50A {Homo
sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A*
3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A*
2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A*
3cpc_A* ...
Length = 316
Score = 90.8 bits (226), Expect = 4e-20
Identities = 39/184 (21%), Positives = 60/184 (32%), Gaps = 52/184 (28%)
Query: 480 SDLVRGPLLGQGFFGQVYRVT----HRETGEVMV----LKELYRVDEEAEKNFLKESKQG 531
L G LG+G FGQV + V LKE + + E
Sbjct: 27 DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKE--GATHSEHRALMSE---- 80
Query: 532 LIYLIDLGSHGLINNLHCFSQVAVLRSLHHH-NVIRFIGV-LYKDRKLNLVTEYIAGGTL 589
+ +L + HH NV+ +G L ++ E+ G L
Sbjct: 81 ---------------------LKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNL 119
Query: 590 KELLQ---------------DPGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNC 634
L+ L + ++ +A GM +L S IHRDL ++N
Sbjct: 120 STYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNI 179
Query: 635 LVRE 638
L+ E
Sbjct: 180 LLSE 183
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics,
structural genomics consortium, SGC; 1.80A {Toxoplasma
gondii} PDB: 2w1z_A
Length = 377
Score = 90.8 bits (225), Expect = 9e-20
Identities = 34/188 (18%), Positives = 61/188 (32%), Gaps = 12/188 (6%)
Query: 463 RSRSFRVEASKSRIFRASDLVRGPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEK 522
+ FRVE+ R LVRG +LGQ T +ETGE + Y +
Sbjct: 58 TGQPFRVESELGE--RPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSN 115
Query: 523 NFLKESKQGLIYLIDLG---SHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNL 579
+ ++ L + G +L +++ +IR L+
Sbjct: 116 AIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSR 175
Query: 580 VTEY-IAGGTLKELLQD------PGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQ 632
Y L+ + + L R+ + + LH L+H L
Sbjct: 176 FFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHTYLRPV 235
Query: 633 NCLVREVG 640
+ ++ + G
Sbjct: 236 DIVLDQRG 243
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition,
juxtamembrane domain, transferase; 2.10A {Homo sapiens}
SCOP: d.144.1.7
Length = 344
Score = 89.7 bits (223), Expect = 2e-19
Identities = 40/190 (21%), Positives = 65/190 (34%), Gaps = 58/190 (30%)
Query: 480 SDLVRGPLLGQGFFGQVYRVT----HRETGEVMV----LKELYRVDEEAEKNFLKESKQG 531
+L G +LG G FG+V T + + V LKE + D + + E K
Sbjct: 45 ENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKE--KADSSEREALMSELK-- 100
Query: 532 LIYLIDLGSHGLINNLHCFSQVAVLRSLHHH-NVIRFIGVLYKDRKLNLVTEYIAGGTLK 590
++ L H N++ +G + L+ EY G L
Sbjct: 101 -----------------------MMTQLGSHENIVNLLGACTLSGPIYLIFEYCCYGDLL 137
Query: 591 ELL----------------------QDPGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRD 628
L ++ L + + FA +A GM +L + +HRD
Sbjct: 138 NYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRD 197
Query: 629 LNSQNCLVRE 638
L ++N LV
Sbjct: 198 LAARNVLVTH 207
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding,
phosphorylation, allosteric enzyme, alternative
splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A
{Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A*
1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Length = 297
Score = 88.1 bits (219), Expect = 2e-19
Identities = 35/154 (22%), Positives = 68/154 (44%), Gaps = 27/154 (17%)
Query: 488 LGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLINNL 547
+GQG G VY TG+ + ++++ + ++ + E
Sbjct: 28 IGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINE-------------------- 67
Query: 548 HCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLPWGQRVN 607
+ V+R + N++ ++ +L +V EY+AGG+L +++ + + GQ
Sbjct: 68 -----ILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTE--TCMDEGQIAA 120
Query: 608 FARDIAAGMTYLHSMNLIHRDLNSQNCLVREVGS 641
R+ + +LHS +IHRD+ S N L+ GS
Sbjct: 121 VCRECLQALEFLHSNQVIHRDIKSDNILLGMDGS 154
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer,
transferase, serine/threonine-protein kinase,
nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Length = 373
Score = 89.4 bits (222), Expect = 2e-19
Identities = 35/155 (22%), Positives = 62/155 (40%), Gaps = 25/155 (16%)
Query: 481 DLVRGPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGS 540
+ + +LG G FGQV++ TG + K + + ++ E
Sbjct: 90 TVSKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNE------------- 136
Query: 541 HGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPL 600
++V+ L H N+I+ + LV EY+ GG L + + D L
Sbjct: 137 ------------ISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGGELFDRIIDESYNL 184
Query: 601 PWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCL 635
+ F + I G+ ++H M ++H DL +N L
Sbjct: 185 TELDTILFMKQICEGIRHMHQMYILHLDLKPENIL 219
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 90.5 bits (225), Expect = 3e-19
Identities = 37/151 (24%), Positives = 65/151 (43%), Gaps = 13/151 (8%)
Query: 485 GPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLI 544
LG G +G+V + +K + +K+ + + H I
Sbjct: 41 VRKLGSGAYGEVLLCKEKNGHSEKAIKVI-------KKSQFDKGRYSDDNKNIEKFHEEI 93
Query: 545 NNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLPWGQ 604
N ++++L+SL H N+I+ V + LVTE+ GG L E + + +
Sbjct: 94 YN-----EISLLKSLDHPNIIKLFDVFEDKKYFYLVTEFYEGGELFEQIINRHK-FDECD 147
Query: 605 RVNFARDIAAGMTYLHSMNLIHRDLNSQNCL 635
N + I +G+ YLH N++HRD+ +N L
Sbjct: 148 AANIMKQILSGICYLHKHNIVHRDIKPENIL 178
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the
N-terminal LIM domain of LMO4...; fusion protein, LMO
proteins, metal binding protein; NMR {Mus musculus}
SCOP: g.39.1.3 g.39.1.3
Length = 122
Score = 83.1 bits (205), Expect = 3e-19
Identities = 22/122 (18%), Positives = 38/122 (31%), Gaps = 16/122 (13%)
Query: 6 TPEILTCAGCLNNIVEDEYVQALSQEWHTDCFRCSACDVMLDNW---YFEKDGLLFCKED 62
+ CAGC I + + A+ WH+ C +CS+C L + + K G++ C+ D
Sbjct: 2 SLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRND 61
Query: 63 YNGKYGEACQNCGQMMSGPVMVVGDHKFHPECFKCTSCSCCIGDGESYALVERSILYCGL 122
Y +G + G + + L L
Sbjct: 62 YIRLFGNSGAGGSG------------GHMGSGGDVMVVGEPTLMGGEFGDEDER-LITRL 108
Query: 123 CY 124
Sbjct: 109 EN 110
Score = 48.4 bits (115), Expect = 4e-07
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 68 GEACQNCGQ-MMSGPVMVVGDHKFHPECFKCTSCSCCIGDGESYALVERSILYCGLCYKR 126
+ C CG + ++ D +H C KC+SC +GD + + + ++ C Y R
Sbjct: 5 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIR 64
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding,
transferase, nucleotide-binding; HET: SEP; 1.6A {Homo
sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A*
2bva_A*
Length = 321
Score = 87.4 bits (217), Expect = 5e-19
Identities = 29/154 (18%), Positives = 57/154 (37%), Gaps = 27/154 (17%)
Query: 488 LGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLINNL 547
+G+G G V + +G + +K + ++ + E
Sbjct: 53 IGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNE-------------------- 92
Query: 548 HCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLPWGQRVN 607
V ++R H NV+ +L ++ E++ GG L +++ L Q
Sbjct: 93 -----VVIMRDYQHFNVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQ--VRLNEEQIAT 145
Query: 608 FARDIAAGMTYLHSMNLIHRDLNSQNCLVREVGS 641
+ + YLH+ +IHRD+ S + L+ G
Sbjct: 146 VCEAVLQALAYLHAQGVIHRDIKSDSILLTLDGR 179
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast);
two-LOBE protein kinase fold, ATP-binding, nucleotid
binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens}
PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A*
3ggf_A* 2xik_A*
Length = 303
Score = 87.4 bits (217), Expect = 5e-19
Identities = 43/153 (28%), Positives = 73/153 (47%), Gaps = 26/153 (16%)
Query: 488 LGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLINNL 547
+G+G FG+V++ T +V+ +K +D E ++ +++ +Q
Sbjct: 30 IGKGSFGEVFKGIDNRTQKVVAIK---IIDLEEAEDEIEDIQQ----------------- 69
Query: 548 HCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLPWGQRVN 607
++ VL V ++ G KD KL ++ EY+ GG+ +LL+ PL Q
Sbjct: 70 ----EITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEP--GPLDETQIAT 123
Query: 608 FARDIAAGMTYLHSMNLIHRDLNSQNCLVREVG 640
R+I G+ YLHS IHRD+ + N L+ E G
Sbjct: 124 ILREILKGLDYLHSEKKIHRDIKAANVLLSEHG 156
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4;
protein-protein interaction, LIM-interaction DOM LMO4,
RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo
sapiens}
Length = 123
Score = 82.5 bits (203), Expect = 5e-19
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 1 MEDSETPEILTCAGCLNNIVEDEYVQALSQEWHTDCFRCSACDVMLDNW---YFEKDGLL 57
S CAGC I + + A+ WH+ C +CS+C L + + K G++
Sbjct: 53 HMGSGGLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMI 112
Query: 58 FCKEDYNGKYG 68
C+ DY +G
Sbjct: 113 LCRNDYIRLFG 123
Score = 51.7 bits (123), Expect = 3e-08
Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 54 DGLLFCKEDYNGKYGEACQNCGQ-MMSGPVMVVGDHKFHPECFKCTSCSCCIGDGESYAL 112
G G + C CG + ++ D +H C KC+SC +GD + +
Sbjct: 47 GGGSGGHMGSGGLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSY 106
Query: 113 VERSILYCGLCYKR 126
+ ++ C Y R
Sbjct: 107 TKSGMILCRNDYIR 120
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A
{Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Length = 348
Score = 87.5 bits (217), Expect = 8e-19
Identities = 40/154 (25%), Positives = 65/154 (42%), Gaps = 23/154 (14%)
Query: 488 LGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLINNL 547
+G G FG VY EV+ +K++ +++ + + I
Sbjct: 62 IGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKW-----------------QDIIK- 103
Query: 548 HCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLPWGQRVN 607
+V L+ L H N I++ G ++ LV EY G +LL+ +PL +
Sbjct: 104 ----EVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCLGS-ASDLLEVHKKPLQEVEIAA 158
Query: 608 FARDIAAGMTYLHSMNLIHRDLNSQNCLVREVGS 641
G+ YLHS N+IHRD+ + N L+ E G
Sbjct: 159 VTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGL 192
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET:
DKI; 1.53A {Homo sapiens}
Length = 331
Score = 86.9 bits (216), Expect = 1e-18
Identities = 37/185 (20%), Positives = 80/185 (43%), Gaps = 31/185 (16%)
Query: 460 SRTRSRSFRVEASKSRIFRASDL-VRGPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDE 518
S +++ F++ + L+G+G +G V + +++TG ++ +K+ +
Sbjct: 4 HHHHHSSGVDLGTENLYFQSMEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKF-LESD 62
Query: 519 EAE---KNFLKESKQGLIYLIDLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDR 575
+ + K ++E + +L+ L H N++ + V K +
Sbjct: 63 DDKMVKKIAMRE-------------------------IKLLKQLRHENLVNLLEVCKKKK 97
Query: 576 KLNLVTEYIAGGTLKELLQDPGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCL 635
+ LV E++ T+ + L+ L + + I G+ + HS N+IHRD+ +N L
Sbjct: 98 RWYLVFEFVDH-TILDDLELFPNGLDYQVVQKYLFQIINGIGFCHSHNIIHRDIKPENIL 156
Query: 636 VREVG 640
V + G
Sbjct: 157 VSQSG 161
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia
californica} SCOP: d.144.1.7
Length = 387
Score = 87.1 bits (216), Expect = 2e-18
Identities = 29/148 (19%), Positives = 59/148 (39%), Gaps = 25/148 (16%)
Query: 488 LGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLINNL 547
LG G FG V+R + TG V V K + + E
Sbjct: 59 LGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNE-------------------- 98
Query: 548 HCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLPWGQRVN 607
++++ LHH +I ++ L+ E+++GG L + + + + +N
Sbjct: 99 -----ISIMNQLHHPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVIN 153
Query: 608 FARDIAAGMTYLHSMNLIHRDLNSQNCL 635
+ R G+ ++H +++H D+ +N +
Sbjct: 154 YMRQACEGLKHMHEHSIVHLDIKPENIM 181
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas;
spindle assembly checkpoint, mitosis, kinase,
activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo
sapiens}
Length = 365
Score = 87.0 bits (215), Expect = 2e-18
Identities = 33/161 (20%), Positives = 54/161 (33%), Gaps = 34/161 (21%)
Query: 487 LLGQGFFGQVYRVTHR-----ETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSH 541
LLG+G F QVY T + + VLK + E
Sbjct: 72 LLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQ-------KPANPWEFY------------ 112
Query: 542 GLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQD----PG 597
+ L L+ H ++F LV E + GTL + P
Sbjct: 113 -IGTQLM-----ERLKPSMQHMFMKFYSAHLFQNGSVLVGELYSYGTLLNAINLYKNTPE 166
Query: 598 QPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVRE 638
+ +P G ++FA + + +H +IH D+ N ++
Sbjct: 167 KVMPQGLVISFAMRMLYMIEQVHDCEIIHGDIKPDNFILGN 207
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP
complex, transferase; HET: ANP; 2.30A {Homo sapiens}
PDB: 3alo_A*
Length = 327
Score = 86.2 bits (214), Expect = 2e-18
Identities = 37/187 (19%), Positives = 74/187 (39%), Gaps = 29/187 (15%)
Query: 459 LSRTRSRSFRVEASKSRIFRASDLVRGPLLGQGFFGQVYRVTHRETGEVMVLKELYR-VD 517
+S S ++ + F A DL +G+G +G V ++ H+ +G++M +K + VD
Sbjct: 1 MSIESSGKLKISPEQHWDFTAEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVD 60
Query: 518 EEAEKNFLKESKQGLIYLIDLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKL 577
E+ +K L + +D V+RS +++F G L+++
Sbjct: 61 EKEQKQLLMD--------LD----------------VVMRSSDCPYIVQFYGALFREGDC 96
Query: 578 NLVTEYIAGG---TLKELLQDPGQPLPWGQRVNFARDIAAGMTYLHS-MNLIHRDLNSQN 633
+ E ++ K + +P + +L + +IHRD+ N
Sbjct: 97 WICMELMSTSFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENLKIIHRDIKPSN 156
Query: 634 CLVREVG 640
L+ G
Sbjct: 157 ILLDRSG 163
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation,
kinase domain ubiquitin-like domain, kinase, substrate
binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Length = 676
Score = 88.6 bits (219), Expect = 2e-18
Identities = 39/159 (24%), Positives = 65/159 (40%), Gaps = 32/159 (20%)
Query: 485 GPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLI 544
LG G FG V R H++TGE + +K+ + ++++
Sbjct: 19 KERLGTGGFGYVLRWIHQDTGEQVAIKQC-------RQELSPKNRERW------------ 59
Query: 545 NNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLN------LVTEYIAGGTLKELLQDPGQ 598
++ +++ L+H NV+ V +KL L EY GG L++ L
Sbjct: 60 -----CLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFEN 114
Query: 599 P--LPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCL 635
L G DI++ + YLH +IHRDL +N +
Sbjct: 115 CCGLKEGPIRTLLSDISSALRYLHENRIIHRDLKPENIV 153
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET:
D15; 2.40A {Homo sapiens}
Length = 311
Score = 85.7 bits (213), Expect = 2e-18
Identities = 34/152 (22%), Positives = 66/152 (43%), Gaps = 30/152 (19%)
Query: 488 LGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAE---KNFLKESKQGLIYLIDLGSHGLI 544
+G+G +G V++ +R+TG+++ +K+ E+ K L+E
Sbjct: 11 IGEGSYGVVFKCRNRDTGQIVAIKKF-LESEDDPVIKKIALRE----------------- 52
Query: 545 NNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLPWGQ 604
+ +L+ L H N++ + V + R+L+LV EY T+ L + +P
Sbjct: 53 --------IRMLKQLKHPNLVNLLEVFRRKRRLHLVFEYCDH-TVLHELDRYQRGVPEHL 103
Query: 605 RVNFARDIAAGMTYLHSMNLIHRDLNSQNCLV 636
+ + + H N IHRD+ +N L+
Sbjct: 104 VKSITWQTLQAVNFCHKHNCIHRDVKPENILI 135
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding,
serine/threonine-protein kinase, ATP-binding,
transferase, coiled coil, cell division, kinase; HET:
TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A*
3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A*
3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A*
2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Length = 284
Score = 84.6 bits (210), Expect = 3e-18
Identities = 38/168 (22%), Positives = 68/168 (40%), Gaps = 23/168 (13%)
Query: 469 VEASKSRIFRASDLVRGPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKES 528
+ R F D G LG+G FG VY ++ +M LK L++ + EK ++
Sbjct: 3 LAEMPKRKFTIDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFK--SQLEKEGVEH- 59
Query: 529 KQGLIYLIDLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGT 588
++ + L H N++R + +++ L+ E+ G
Sbjct: 60 -------------------QLRREIEIQSHLRHPNILRMYNYFHDRKRIYLMLEFAPRGE 100
Query: 589 LKELLQDPGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLV 636
L + LQ G + F ++A + Y H +IHRD+ +N L+
Sbjct: 101 LYKELQKHG-RFDEQRSATFMEELADALHYCHERKVIHRDIKPENLLM 147
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like
kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB:
2ou7_A* 3fc2_A* 3thb_A*
Length = 335
Score = 84.7 bits (210), Expect = 6e-18
Identities = 41/192 (21%), Positives = 69/192 (35%), Gaps = 26/192 (13%)
Query: 448 SPPKSLRPACDLSRTRSRSFRVEASKSRIFRASDL---VRGPLLGQGFFGQVYRVTHRET 504
P K+ P + + + + VRG LG+G F + + ++ +T
Sbjct: 6 DPGKAGVPGVAAPGAPAAAPPAKEIPEVLVDPRSRRRYVRGRFLGKGGFAKCFEISDADT 65
Query: 505 GEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLINNLHCFSQVAVLRSLHHHNV 564
EV K + + S L + ++++ RSL H +V
Sbjct: 66 KEVFAGKIVPK------------SL--------LLKPHQREKM--SMEISIHRSLAHQHV 103
Query: 565 IRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLPWGQRVNFARDIAAGMTYLHSMNL 624
+ F G + + +V E +L EL + R + R I G YLH +
Sbjct: 104 VGFHGFFEDNDFVFVVLELCRRRSLLELHKRRKALTEPEAR-YYLRQIVLGCQYLHRNRV 162
Query: 625 IHRDLNSQNCLV 636
IHRDL N +
Sbjct: 163 IHRDLKLGNLFL 174
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase,
transferase; HET: ANP; 2.60A {Plasmodium falciparum}
PDB: 2pmn_X* 2pmo_X*
Length = 348
Score = 84.8 bits (210), Expect = 6e-18
Identities = 27/196 (13%), Positives = 73/196 (37%), Gaps = 20/196 (10%)
Query: 449 PPKSLRPACDLSRTRSRSFRVEASKSRIFRASDLVRGPLLGQGFFGQVYRVTHRETGEVM 508
P S++ LS + + + K + +D L QG F ++ + +
Sbjct: 2 PLGSMKDI--LSNYSNLIYLNKYVKEKDKYINDYRIIRTLNQGKFNKIILC--EKDNKFY 57
Query: 509 VLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLINNLHCFSQVAVLRSLHHHNVIRFI 568
LK+ + E +++F K + + +++ ++ + + +
Sbjct: 58 ALKKYEKSLLEKKRDFTKSNNDKISIKSKYD--------DFKNELQIITDIKNEYCLTCE 109
Query: 569 GVLYKDRKLNLVTEYIAGGTLKELLQDPG-------QPLPWGQRVNFARDIAAGMTYLHS 621
G++ ++ ++ EY+ ++ + + +P + + +Y+H+
Sbjct: 110 GIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHN 169
Query: 622 -MNLIHRDLNSQNCLV 636
N+ HRD+ N L+
Sbjct: 170 EKNICHRDVKPSNILM 185
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat
protein, ADA protein, ATP-binding, cell cycle, kinase,
nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo
sapiens} PDB: 2wtk_B*
Length = 389
Score = 85.0 bits (210), Expect = 8e-18
Identities = 27/158 (17%), Positives = 62/158 (39%), Gaps = 28/158 (17%)
Query: 488 LGQGF--FGQVYRVTHRETGEVMVLKELYRVD-EEAEKNFLKESKQGLIYLIDLGSHGLI 544
+G+GF V ++ TGE + ++ R++ E + +
Sbjct: 33 IGKGFEDLMTVNLARYKPTGEYVTVR---RINLEACSNEMVTFLQG-------------- 75
Query: 545 NNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQD-PGQPLPWG 603
++ V + +H N++ + D +L +VT ++A G+ K+L+ +
Sbjct: 76 -------ELHVSKLFNHPNIVPYRATFIADNELWVVTSFMAYGSAKDLICTHFMDGMNEL 128
Query: 604 QRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVREVGS 641
+ + + Y+H M +HR + + + L+ G
Sbjct: 129 AIAYILQGVLKALDYIHHMGYVHRSVKASHILISVDGK 166
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 85.9 bits (213), Expect = 8e-18
Identities = 36/154 (23%), Positives = 60/154 (38%), Gaps = 30/154 (19%)
Query: 485 GPLLGQGFFGQVYRVTHRETGEVMVLK--ELYRVDEEAEKNFLKESKQGLIYLIDLGSHG 542
LG G +G+V + T +K V + L+E
Sbjct: 42 VKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEE--------------- 86
Query: 543 LINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRK-LNLVTEYIAGGTLKELLQDPGQPLP 601
VAVL+ L H N+++ ++D++ LV E GG L + + +
Sbjct: 87 ----------VAVLKLLDHPNIMKLYDF-FEDKRNYYLVMECYKGGELFDEIIHRMK-FN 134
Query: 602 WGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCL 635
+ + +G+TYLH N++HRDL +N L
Sbjct: 135 EVDAAVIIKQVLSGVTYLHKHNIVHRDLKPENLL 168
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein
kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Length = 326
Score = 84.0 bits (208), Expect = 9e-18
Identities = 41/161 (25%), Positives = 72/161 (44%), Gaps = 34/161 (21%)
Query: 488 LGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLINNL 547
+G G +GQVY+ H +TG++ +K + V + E+ +E
Sbjct: 32 VGNGTYGQVYKGRHVKTGQLAAIKVM-DVTGDEEEEIKQE-------------------- 70
Query: 548 HCFSQVAVLRSL-HHHNVIRFIGVLYK------DRKLNLVTEYIAGGTLKELLQD-PGQP 599
+ +L+ HH N+ + G K D +L LV E+ G++ +L+++ G
Sbjct: 71 -----INMLKKYSHHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNT 125
Query: 600 LPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVREVG 640
L R+I G+++LH +IHRD+ QN L+ E
Sbjct: 126 LKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVLLTENA 166
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant,
structural genomics consortium, SCG, binding,
nucleotide-binding, phosphoprotein; HET: STU; 2.26A
{Homo sapiens} PDB: 3enm_A
Length = 290
Score = 83.5 bits (207), Expect = 9e-18
Identities = 38/168 (22%), Positives = 74/168 (44%), Gaps = 28/168 (16%)
Query: 477 FRASDLVRGPLLGQGFFGQVYRVTHRETGEVMVLKELYR-VDEEAEKNFLKESKQGLIYL 535
+A DL LG+G +G V ++ H +G++M +K + V+ + +K L +
Sbjct: 4 VKADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMD-------- 55
Query: 536 IDLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLK--ELL 593
+D +R++ + F G L+++ + + E + K + +
Sbjct: 56 LD----------------ISMRTVDCPFTVTFYGALFREGDVWICMELMDTSLDKFYKQV 99
Query: 594 QDPGQPLPWGQRVNFARDIAAGMTYLHS-MNLIHRDLNSQNCLVREVG 640
D GQ +P A I + +LHS +++IHRD+ N L+ +G
Sbjct: 100 IDKGQTIPEDILGKIAVSIVKALEHLHSKLSVIHRDVKPSNVLINALG 147
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 85.5 bits (212), Expect = 9e-18
Identities = 34/155 (21%), Positives = 65/155 (41%), Gaps = 31/155 (20%)
Query: 485 GPLLGQGFFGQVYRVTHRETGEVMVLKELYR---VDEEAEKNFLKESKQGLIYLIDLGSH 541
+LG+G FG+V + TG+ +K + + + +++ L+E
Sbjct: 31 QRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLRE-------------- 76
Query: 542 GLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRK-LNLVTEYIAGGTLKELLQDPGQPL 600
V +L+ L H N+++ ++D+ LV E GG L + + +
Sbjct: 77 -----------VQLLKQLDHPNIMKLYEF-FEDKGYFYLVGEVYTGGELFDEIISRKR-F 123
Query: 601 PWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCL 635
R + +G+TY+H ++HRDL +N L
Sbjct: 124 SEVDAARIIRQVLSGITYMHKNKIVHRDLKPENLL 158
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain,
kinase and RNAse function, ATP binding ssRNA
dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo
sapiens}
Length = 432
Score = 84.8 bits (210), Expect = 1e-17
Identities = 31/160 (19%), Positives = 55/160 (34%), Gaps = 31/160 (19%)
Query: 483 VRGPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHG 542
+LG G G + + +K R+ E +E
Sbjct: 27 CPKDVLGHGAEGTIVYR-GMFDNRDVAVK---RILPECFSFADRE--------------- 67
Query: 543 LINNLHCFSQVAVLRSLHHH-NVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLP 601
V +LR H NVIR+ + + E TL+E ++
Sbjct: 68 ----------VQLLRESDEHPNVIRYFCTEKDRQFQYIAIEL-CAATLQEYVEQKDFAHL 116
Query: 602 WGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVREVGS 641
+ + + +G+ +LHS+N++HRDL N L+ +
Sbjct: 117 GLEPITLLQQTTSGLAHLHSLNIVHRDLKPHNILISMPNA 156
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2,
E.C.2.7.11.17, phosphorylation, AMPKK, metabolism,
binding, calmodulin-binding; HET: 609; 2.40A {Homo
sapiens}
Length = 298
Score = 82.7 bits (205), Expect = 2e-17
Identities = 37/155 (23%), Positives = 64/155 (41%), Gaps = 5/155 (3%)
Query: 485 GPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLI 544
+G+G +G V + +K L + + F + G
Sbjct: 18 KDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPR 77
Query: 545 NNLHCFSQ-VAVLRSLHHHNVIRFIGVLY--KDRKLNLVTEYIAGGTLKELLQDPGQPLP 601
+ Q +A+L+ L H NV++ + VL + L +V E + G + E+ +PL
Sbjct: 78 GPIEQVYQEIAILKKLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTL--KPLS 135
Query: 602 WGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLV 636
Q + +D+ G+ YLH +IHRD+ N LV
Sbjct: 136 EDQARFYFQDLIKGIEYLHYQKIIHRDIKPSNLLV 170
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 84.9 bits (210), Expect = 2e-17
Identities = 34/151 (22%), Positives = 60/151 (39%), Gaps = 25/151 (16%)
Query: 485 GPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLI 544
LG G FG V+RVT R TG K + E ++ KE
Sbjct: 162 HEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKE----------------- 204
Query: 545 NNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLPWGQ 604
+ + L H ++ D ++ ++ E+++GG L E + D + +
Sbjct: 205 --------IQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKMSEDE 256
Query: 605 RVNFARDIAAGMTYLHSMNLIHRDLNSQNCL 635
V + R + G+ ++H N +H DL +N +
Sbjct: 257 AVEYMRQVCKGLCHMHENNYVHLDLKPENIM 287
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens}
SCOP: d.144.1.7
Length = 321
Score = 82.7 bits (205), Expect = 2e-17
Identities = 28/151 (18%), Positives = 58/151 (38%), Gaps = 26/151 (17%)
Query: 485 GPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLI 544
LG+G FG V+R + + + K + +V + KE
Sbjct: 10 AEDLGRGEFGIVHRCVETSSKKTYMAKFV-KVKGTDQVLVKKE----------------- 51
Query: 545 NNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLPWGQ 604
+++L H N++ +L ++ E+I+G + E + L +
Sbjct: 52 --------ISILNIARHRNILHLHESFESMEELVMIFEFISGLDIFERINTSAFELNERE 103
Query: 605 RVNFARDIAAGMTYLHSMNLIHRDLNSQNCL 635
V++ + + +LHS N+ H D+ +N +
Sbjct: 104 IVSYVHQVCEALQFLHSHNIGHFDIRPENII 134
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase
inhibitor complex, transferase-transferase activator
complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A*
1ung_A* 1unl_A* 1h4l_A
Length = 292
Score = 81.8 bits (203), Expect = 3e-17
Identities = 44/156 (28%), Positives = 74/156 (47%), Gaps = 30/156 (19%)
Query: 488 LGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAE---KNFLKESKQGLIYLIDLGSHGLI 544
+G+G +G V++ +RET E++ LK + R+D++ E + L+E
Sbjct: 10 IGEGTYGTVFKAKNRETHEIVALKRV-RLDDDDEGVPSSALRE----------------- 51
Query: 545 NNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLPWGQ 604
+ +L+ L H N++R VL+ D+KL LV E+ LK+ L
Sbjct: 52 --------ICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCDQ-DLKKYFDSCNGDLDPEI 102
Query: 605 RVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVREVG 640
+F + G+ + HS N++HRDL QN L+ G
Sbjct: 103 VKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNG 138
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase;
1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A
2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Length = 321
Score = 82.3 bits (204), Expect = 3e-17
Identities = 38/152 (25%), Positives = 61/152 (40%), Gaps = 20/152 (13%)
Query: 485 GPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLI 544
G LG G F V + + TG E A K K + + +
Sbjct: 17 GEELGSGQFAIVKKCREKSTGL-----------EYAAKFIKKRQSRASRRGVSR--EEIE 63
Query: 545 NNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLPWGQ 604
+V++LR + HHNVI V + L+ E ++GG L + L L +
Sbjct: 64 R------EVSILRQVLHHNVITLHDVYENRTDVVLILELVSGGELFDFLAQKES-LSEEE 116
Query: 605 RVNFARDIAAGMTYLHSMNLIHRDLNSQNCLV 636
+F + I G+ YLH+ + H DL +N ++
Sbjct: 117 ATSFIKQILDGVNYLHTKKIAHFDLKPENIML 148
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine
kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing
protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB:
3lm0_A*
Length = 327
Score = 82.7 bits (205), Expect = 3e-17
Identities = 38/182 (20%), Positives = 60/182 (32%), Gaps = 34/182 (18%)
Query: 463 RSRSFRVEASKSRIFRASDL-----VRGPLLGQGFFGQVYRVTHRETGEVMVLKELY--R 515
S + + + LG+G F V + + TG+ K L R
Sbjct: 7 HSSGVDLGTENLYFQSMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRR 66
Query: 516 VDEEAEKNFLKESKQGLIYLIDLGSHGLINNLHCFSQVAVLRSL-HHHNVIRFIGVLYKD 574
++ L E +AVL VI V
Sbjct: 67 RGQDCRAEILHE-------------------------IAVLELAKSCPRVINLHEVYENT 101
Query: 575 RKLNLVTEYIAGGTLKE-LLQDPGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQN 633
++ L+ EY AGG + L + + + + + I G+ YLH N++H DL QN
Sbjct: 102 SEIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQNNIVHLDLKPQN 161
Query: 634 CL 635
L
Sbjct: 162 IL 163
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET:
AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Length = 361
Score = 82.8 bits (205), Expect = 3e-17
Identities = 36/151 (23%), Positives = 58/151 (38%), Gaps = 20/151 (13%)
Query: 485 GPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLI 544
G LG G F V + + TG E A K K + +
Sbjct: 17 GEELGSGQFAIVKKCREKSTGL-----------EYAAKFIKKRQSRASRRGVCREE---- 61
Query: 545 NNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLPWGQ 604
+V++LR + H N+I V + L+ E ++GG L + L L +
Sbjct: 62 ----IEREVSILRQVLHPNIITLHDVYENRTDVVLILELVSGGELFDFLAQKES-LSEEE 116
Query: 605 RVNFARDIAAGMTYLHSMNLIHRDLNSQNCL 635
+F + I G+ YLH+ + H DL +N +
Sbjct: 117 ATSFIKQILDGVNYLHTKKIAHFDLKPENIM 147
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Length = 66
Score = 75.4 bits (186), Expect = 3e-17
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 11 TCAGCLNNIVEDEYVQALSQEWHTDCFRCSACDVMLDN-WYFEKDGLLFCKEDYNGKYGE 69
C C +E V A+ ++WH + F C+ C+ ++E+ GL +C+ YN +G+
Sbjct: 7 ICGAC-RRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGD 65
Score = 51.1 bits (123), Expect = 1e-08
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Query: 71 CQNCGQMMSGPVMVVGDHKFHPECFKCTSCSCCIGDGESYALVERSILYCGLCYKRQMQP 130
C C + + G V+ ++H E F C C Y + + YC Y +
Sbjct: 8 CGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHY--ERKGLAYCETHYNQLFGD 65
Query: 131 L 131
+
Sbjct: 66 V 66
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7,
activated mutant, ATP-binding, structural genomics,
NPPSFA; 2.45A {Homo sapiens}
Length = 318
Score = 82.0 bits (203), Expect = 3e-17
Identities = 34/170 (20%), Positives = 65/170 (38%), Gaps = 27/170 (15%)
Query: 473 KSRIFRASDLVRGPLLGQGFFGQVYRVTHRETGEVMVLKELYR-VDEEAEKNFLKESKQG 531
+ +DL +G G GQV+++ R+TG V+ +K++ R ++E K L +
Sbjct: 18 QRYQAEINDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMD---- 73
Query: 532 LIYLIDLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKE 591
++ + +S +++ G + + + E + K
Sbjct: 74 ------------LDVVL--------KSHDCPYIVQCFGTFITNTDVFIAMELMGTCAEKL 113
Query: 592 LLQDPGQPLPWGQRVNFARDIAAGMTYLHS-MNLIHRDLNSQNCLVREVG 640
+ G P+P I + YL +IHRD+ N L+ E G
Sbjct: 114 KKRMQG-PIPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERG 162
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain,
ablim2, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 81
Score = 75.6 bits (186), Expect = 3e-17
Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Query: 62 DYNGKYGEACQNCGQMMSGPVMVVGDHKFHPECFKCTSCSCCIGDGESYALVERSILYCG 121
DY YG C +C Q + G V+ +HP+CF C C G+ + C
Sbjct: 9 DYQRLYGTRCFSCDQFIEGEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKEC-MCQ 67
Query: 122 LCYKR 126
C
Sbjct: 68 KCSLP 72
Score = 52.9 bits (127), Expect = 4e-09
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 12 CAGCLNNIVEDEYVQALSQEWHTDCFRCSACDVMLDN--WYFEKDGLLFCKEDYN 64
C C + +E E V AL + +H DCF C+ C + C++
Sbjct: 18 CFSC-DQFIEGEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSL 71
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 84.0 bits (208), Expect = 4e-17
Identities = 33/154 (21%), Positives = 60/154 (38%), Gaps = 30/154 (19%)
Query: 485 GPLLGQGFFGQVYRVTHRETGEVMVLK--ELYRVDEEAEKNFLKESKQGLIYLIDLGSHG 542
+LG+G FG+V + R T + +K + L+E
Sbjct: 27 VCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILRE--------------- 71
Query: 543 LINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRK-LNLVTEYIAGGTLKELLQDPGQPLP 601
V +L+ L H N+++ + +D +V E GG L + + +
Sbjct: 72 ----------VELLKKLDHPNIMKLFEI-LEDSSSFYIVGELYTGGELFDEIIKRKR-FS 119
Query: 602 WGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCL 635
+ + +G+TY+H N++HRDL +N L
Sbjct: 120 EHDAARIIKQVFSGITYMHKHNIVHRDLKPENIL 153
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1,
selectivity residues, POLO-like K structure based drug
design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo
sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A*
3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A*
3db6_A* 3dbe_A* 3dbf_A*
Length = 294
Score = 81.1 bits (201), Expect = 5e-17
Identities = 37/153 (24%), Positives = 61/153 (39%), Gaps = 23/153 (15%)
Query: 484 RGPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGL 543
RG LG+G F + + ++ +T EV K + + S L
Sbjct: 19 RGRFLGKGGFAKCFEISDADTKEVFAGKIVPK------------SL--------LLKPHQ 58
Query: 544 INNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLPWG 603
+ ++++ RSL H +V+ F G + + +V E +L EL + L
Sbjct: 59 REKM--SMEISIHRSLAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHKRRK-ALTEP 115
Query: 604 QRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLV 636
+ + R I G YLH +IHRDL N +
Sbjct: 116 EARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFL 148
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation,
protein-protein interaction, PR kinase, cell cycle,
transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP:
d.144.1.7
Length = 346
Score = 81.9 bits (203), Expect = 6e-17
Identities = 34/153 (22%), Positives = 67/153 (43%), Gaps = 21/153 (13%)
Query: 488 LGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLINNL 547
LG+G F VY+ + T +++ +K++ ++ E+K G+ N
Sbjct: 18 LGEGQFATVYKARDKNTNQIVAIKKI-KLGHR------SEAKDGI-------------NR 57
Query: 548 HCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLPWGQRVN 607
++ +L+ L H N+I + ++LV +++ L+ +++D L
Sbjct: 58 TALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFMETD-LEVIIKDNSLVLTPSHIKA 116
Query: 608 FARDIAAGMTYLHSMNLIHRDLNSQNCLVREVG 640
+ G+ YLH ++HRDL N L+ E G
Sbjct: 117 YMLMTLQGLEYLHQHWILHRDLKPNNLLLDENG 149
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition
state, activation helix, serine/threonine-PR kinase;
HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Length = 340
Score = 81.6 bits (202), Expect = 6e-17
Identities = 44/197 (22%), Positives = 85/197 (43%), Gaps = 31/197 (15%)
Query: 448 SPPKSLRPACDLSRTRSRSFRVEASKSRIFRASDLVRGPLLGQGFFGQVYRVTHRETGEV 507
P S P DL S++ +++ +A DL LG+G +G V ++ H +G++
Sbjct: 22 QPQTSSTPPRDLD---SKACISIGNQNFEVKADDLEPIMELGRGAYGVVEKMRHVPSGQI 78
Query: 508 MVLKELYR-VDEEAEKNFLKESKQGLIYLIDLGSHGLINNLHCFSQVAVLRSLHHHNVIR 566
M +K + V+ + +K L + +D +R++ +
Sbjct: 79 MAVKRIRATVNSQEQKRLLMD--------LD----------------ISMRTVDCPFTVT 114
Query: 567 FIGVLYKDRKLNLVTEYIAGGTLK--ELLQDPGQPLPWGQRVNFARDIAAGMTYLHS-MN 623
F G L+++ + + E + K + + D GQ +P A I + +LHS ++
Sbjct: 115 FYGALFREGDVWICMELMDTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLS 174
Query: 624 LIHRDLNSQNCLVREVG 640
+IHRD+ N L+ +G
Sbjct: 175 VIHRDVKPSNVLINALG 191
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics,
parasitology, structural genomics consortium, SGC,
ATP-binding, nucleotide-binding; HET: ANP; 2.55A
{Toxoplasma gondii}
Length = 285
Score = 80.4 bits (199), Expect = 7e-17
Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 35/158 (22%)
Query: 485 GPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLI 544
LG G FG V+ V R +G V+K + K+ + + +
Sbjct: 27 KRKLGSGAFGDVHLVEERSSGLERVIKTI-------NKDRSQVPMEQI------------ 67
Query: 545 NNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRK-LNLVTEYIAGGTLKELLQDPGQPLPWG 603
+++ VL+SL H N+I+ V ++D + +V E GG ELL+ G
Sbjct: 68 -----EAEIEVLKSLDHPNIIKIFEV-FEDYHNMYIVMETCEGG---ELLERIVSAQARG 118
Query: 604 QR------VNFARDIAAGMTYLHSMNLIHRDLNSQNCL 635
+ + + + Y HS +++H+DL +N L
Sbjct: 119 KALSEGYVAELMKQMMNALAYFHSQHVVHKDLKPENIL 156
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3,
ZIP kinase, ZIPK, DAP kinase like kinase, DLK,
structural genomics consortium; HET: 7CP; 1.24A {Homo
sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A*
3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A*
3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A*
3dgk_A ...
Length = 283
Score = 80.3 bits (199), Expect = 7e-17
Identities = 36/151 (23%), Positives = 57/151 (37%), Gaps = 20/151 (13%)
Query: 485 GPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLI 544
G LG G F V + + TG+ E A K K +
Sbjct: 10 GEELGSGQFAIVRKCRQKGTGK-----------EYAAKFIKKRRLSSSRRGVSREE---- 54
Query: 545 NNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLPWGQ 604
+V +LR + H N+I + + L+ E ++GG L + L + L +
Sbjct: 55 ----IEREVNILREIRHPNIITLHDIFENKTDVVLILELVSGGELFDFLAEKES-LTEDE 109
Query: 605 RVNFARDIAAGMTYLHSMNLIHRDLNSQNCL 635
F + I G+ YLHS + H DL +N +
Sbjct: 110 ATQFLKQILDGVHYLHSKRIAHFDLKPENIM 140
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension,
transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Length = 303
Score = 80.5 bits (199), Expect = 1e-16
Identities = 31/161 (19%), Positives = 61/161 (37%), Gaps = 31/161 (19%)
Query: 488 LGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLINNL 547
+G G V E + +K R++ E + + E +
Sbjct: 23 IGSGATAVVQAAYCAPKKEKVAIK---RINLEKCQTSMDELLK----------------- 62
Query: 548 HCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQ-------DPGQPL 600
++ + HH N++ + +L LV + ++GG++ ++++ L
Sbjct: 63 ----EIQAMSQCHHPNIVSYYTSFVVKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVL 118
Query: 601 PWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVREVGS 641
R++ G+ YLH IHRD+ + N L+ E GS
Sbjct: 119 DESTIATILREVLEGLEYLHKNGQIHRDVKAGNILLGEDGS 159
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit;
HET: MES; 2.60A {Homo sapiens}
Length = 326
Score = 80.8 bits (200), Expect = 1e-16
Identities = 37/152 (24%), Positives = 60/152 (39%), Gaps = 20/152 (13%)
Query: 485 GPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLI 544
G LG G F V + + TG + A K K + +
Sbjct: 16 GEELGSGQFAVVKKCREKSTGL-----------QYAAKFIKKRRTKSSRRGVSRED---- 60
Query: 545 NNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLPWGQ 604
+V++L+ + H NVI V + L+ E +AGG L + L + L +
Sbjct: 61 ----IEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKES-LTEEE 115
Query: 605 RVNFARDIAAGMTYLHSMNLIHRDLNSQNCLV 636
F + I G+ YLHS+ + H DL +N ++
Sbjct: 116 ATEFLKQILNGVYYLHSLQIAHFDLKPENIML 147
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural
genomics, structural consortium, SGC, transferase; HET:
FEF; 2.40A {Homo sapiens}
Length = 324
Score = 80.3 bits (199), Expect = 1e-16
Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 37/159 (23%)
Query: 488 LGQGFFGQVYRVTHRETGEVMVLKELYRVDEE------AEKNFLKESKQGLIYLIDLGSH 541
LG+G + VY+ + T ++ LKE+ R++ E A ++E
Sbjct: 10 LGEGTYATVYKGKSKLTDNLVALKEI-RLEHEEGAPCTA----IRE-------------- 50
Query: 542 GLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLP 601
V++L+ L H N++ +++ ++ L LV EY+ LK+ L D G +
Sbjct: 51 -----------VSLLKDLKHANIVTLHDIIHTEKSLTLVFEYLDK-DLKQYLDDCGNIIN 98
Query: 602 WGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVREVG 640
F + G+ Y H ++HRDL QN L+ E G
Sbjct: 99 MHNVKLFLFQLLRGLAYCHRQKVLHRDLKPQNLLINERG 137
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1,
LIM domain protein CLP-36, contractIle protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 79
Score = 74.0 bits (182), Expect = 1e-16
Identities = 10/70 (14%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
Query: 3 DSETPEILTCAGCLNNIVEDEYVQALSQEWHTDCFRCSACDVMLDNW-YFEKDGLLFCKE 61
++ C C + +V+ + H +C+ C+ C L +F + ++C++
Sbjct: 9 IGNAQKLPMCDKC-GTGIVGVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEK 67
Query: 62 DYNGKYGEAC 71
+
Sbjct: 68 HARERVSGPS 77
Score = 59.8 bits (145), Expect = 1e-11
Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 62 DYNGKYGEACQNCGQMMSGPVMVVGDHKFHPECFKCTSCSCCIGDGESYALVERSILYCG 121
N + C CG + G + + D HPEC+ CT C + + + ++ +YC
Sbjct: 9 IGNAQKLPMCDKCGTGIVGVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQ--IYCE 66
Query: 122 LCYKRQMQPL 131
+ ++
Sbjct: 67 KHARERVSGP 76
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 90
Score = 74.0 bits (182), Expect = 2e-16
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 49 WYFEKDGLLFCKEDY-NGKYGEACQNCGQMMSGPVMVVGDHKFHPECFKCTSCSCCIGDG 107
++D L+ E GK C +C Q++ GP +V +HPE F C C +
Sbjct: 5 SSGDQDTLVQRAEHIPAGKRTPMCAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNTMAYI 64
Query: 108 ESYALVERSILYCGLCYKRQMQP 130
E+ LYC LCY++
Sbjct: 65 GFV--EEKGALYCELCYEKFFAS 85
Score = 70.2 bits (172), Expect = 5e-15
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 12 CAGCLNNIVEDEYVQALSQEWHTDCFRCSACDVML-DNWYFEKDGLLFCKEDYNGKYGEA 70
CA C N ++ ++ AL + WH + F C+ C + + E+ G L+C+ Y +
Sbjct: 28 CAHC-NQVIRGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFASG 86
Query: 71 C 71
Sbjct: 87 P 87
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2
calmodulin-like EF...; structural genomics, protist
parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa
II}
Length = 345
Score = 80.3 bits (198), Expect = 2e-16
Identities = 33/195 (16%), Positives = 59/195 (30%), Gaps = 69/195 (35%)
Query: 485 GPLLGQGFFGQVYRVTHRETGE-----VMVLKELYRVDEEAEKNFLKESKQGLIYLIDLG 539
+GQG +G V +T +M ++ +++ + + E
Sbjct: 31 KGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTE------------ 78
Query: 540 SHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQP 599
V +++ LHH N+ R V ++ + LV E GG L + L
Sbjct: 79 -------------VRLMKKLHHPNIARLYEVYEDEQYICLVMELCHGGHLLDKLNVFIDD 125
Query: 600 LPWGQRV---------------------------------------NFARDIAAGMTYLH 620
+ N R I + + YLH
Sbjct: 126 STGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSALHYLH 185
Query: 621 SMNLIHRDLNSQNCL 635
+ + HRD+ +N L
Sbjct: 186 NQGICHRDIKPENFL 200
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM
domain 3, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: g.39.1.3 g.39.1.3
Length = 89
Score = 73.7 bits (181), Expect = 3e-16
Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 4 SETPEILTCAGCLNNIVEDEYVQALSQEWHTDCFRCSACDVML-DNWYFEKDGLLFCKED 62
+ C C + + V+A + H +CF C+ C++ L YF +G L+C+
Sbjct: 20 GSAQRMPLCDKC-GSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETH 78
Query: 63 YNGKYGEAC 71
+
Sbjct: 79 ARARTSGPS 87
Score = 59.8 bits (145), Expect = 2e-11
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 2/69 (2%)
Query: 63 YNGKYGEACQNCGQMMSGPVMVVGDHKFHPECFKCTSCSCCIGDGESYALVERSILYCGL 122
+ + C CG + G V+ D HPECF C C+ + + + LYC
Sbjct: 20 GSAQRMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGE--LYCET 77
Query: 123 CYKRQMQPL 131
+ +
Sbjct: 78 HARARTSGP 86
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4
calmodulin like EF...; calcium dependent protein kinase;
HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II}
PDB: 2qg5_A*
Length = 277
Score = 78.4 bits (194), Expect = 3e-16
Identities = 33/152 (21%), Positives = 58/152 (38%), Gaps = 28/152 (18%)
Query: 485 GPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLI 544
+G+G +G+V + T K++ + E F +E
Sbjct: 14 ENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQE----------------- 56
Query: 545 NNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRK-LNLVTEYIAGGTLKELLQDPGQPLPWG 603
+ +++SL H N+IR ++D + LV E GG L E +
Sbjct: 57 --------IEIMKSLDHPNIIRLYET-FEDNTDIYLVMELCTGGELFERVVHKRV-FRES 106
Query: 604 QRVNFARDIAAGMTYLHSMNLIHRDLNSQNCL 635
+D+ + + Y H +N+ HRDL +N L
Sbjct: 107 DAARIMKDVLSAVAYCHKLNVAHRDLKPENFL 138
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase,
serine/threonine kinase, cyclin clathrine, membrane
trafficking, structural genomics; 2.10A {Homo sapiens}
Length = 337
Score = 79.0 bits (195), Expect = 4e-16
Identities = 33/167 (19%), Positives = 61/167 (36%), Gaps = 37/167 (22%)
Query: 487 LLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLINN 546
+L +G F VY +G LK L +EE + ++E
Sbjct: 35 VLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQE------------------- 75
Query: 547 LHCFSQVAVLRSL-HHHNVIRFIGVLYKDRKLN--------LVTEYIAGGTLKELLQ-DP 596
V ++ L H N+++F ++ + L+TE G ++ L + +
Sbjct: 76 ------VCFMKKLSGHPNIVQFCSAASIGKEESDTGQAEFLLLTELCKGQLVEFLKKMES 129
Query: 597 GQPLPWGQRVNFARDIAAGMTYLHSMN--LIHRDLNSQNCLVREVGS 641
PL + + ++H +IHRDL +N L+ G+
Sbjct: 130 RGPLSCDTVLKIFYQTCRAVQHMHRQKPPIIHRDLKVENLLLSNQGT 176
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase,
FHA domain, ATP-binding, cell cycle, mutation,
LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens}
PDB: 3i6w_A
Length = 419
Score = 79.7 bits (197), Expect = 5e-16
Identities = 29/152 (19%), Positives = 62/152 (40%), Gaps = 19/152 (12%)
Query: 485 GPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLI 544
LG G G+V R+T + + ++ + + + F S + +++
Sbjct: 140 SKTLGSGACGEVKLAFERKTCKKVAIRIISK------RKFAIGSAREADPALNV------ 187
Query: 545 NNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLPWGQ 604
+++ +L+ L+H +I+ + +V E + GG L + + + L
Sbjct: 188 -----ETEIEILKKLNHPCIIKIKNF-FDAEDYYIVLELMEGGELFDKVVGNKR-LKEAT 240
Query: 605 RVNFARDIAAGMTYLHSMNLIHRDLNSQNCLV 636
+ + + YLH +IHRDL +N L+
Sbjct: 241 CKLYFYQMLLAVQYLHENGIIHRDLKPENVLL 272
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase,
kinase, membrane, ATP-binding, prenylation,
serine/threonine-protein kinase, alternative splicing;
HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Length = 304
Score = 78.4 bits (194), Expect = 6e-16
Identities = 32/161 (19%), Positives = 61/161 (37%), Gaps = 42/161 (26%)
Query: 485 GPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLI 544
+LG G F +V+ V R TG++ LK + + + + E
Sbjct: 14 MEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENE----------------- 56
Query: 545 NNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLPWGQ 604
+AVL+ + H N++ + LV + ++GG L + + +
Sbjct: 57 --------IAVLKKIKHENIVTLEDIYESTTHYYLVMQLVSGGELFDRIL---------E 99
Query: 605 RVNF--------ARDIAAGMTYLHSMNLIHRDLNSQNCLVR 637
R + + + + + YLH ++HRDL +N L
Sbjct: 100 RGVYTEKDASLVIQQVLSAVKYLHENGIVHRDLKPENLLYL 140
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV;
calmodulin-binding, nucleotide-binding,
serine/threonine-protein kinase, ATP-binding; HET: DKI;
2.17A {Homo sapiens}
Length = 349
Score = 78.5 bits (194), Expect = 7e-16
Identities = 36/164 (21%), Positives = 57/164 (34%), Gaps = 54/164 (32%)
Query: 485 GPLLGQGFFGQVYRVTHRETGEVMVLKELY-RVDEEAEKNFLKESKQGLIYLIDLGSHGL 543
LG+G VYR + T + LK L VD++ +
Sbjct: 58 ESELGRGATSIVYRCKQKGTQKPYALKVLKKTVDKKIVRT-------------------- 97
Query: 544 INNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLPWG 603
++ VL L H N+I+ + +++LV E + GG EL
Sbjct: 98 --------EIGVLLRLSHPNIIKLKEIFETPTEISLVLELVTGG---ELF---------- 136
Query: 604 QR------------VNFARDIAAGMTYLHSMNLIHRDLNSQNCL 635
R + + I + YLH ++HRDL +N L
Sbjct: 137 DRIVEKGYYSERDAADAVKQILEAVAYLHENGIVHRDLKPENLL 180
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase,
cell cycle, inhibition, cyclin-dependent kinase, cancer,
ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A*
2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A*
1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A*
1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Length = 299
Score = 78.0 bits (193), Expect = 7e-16
Identities = 40/157 (25%), Positives = 77/157 (49%), Gaps = 31/157 (19%)
Query: 488 LGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAE---KNFLKESKQGLIYLIDLGSHGLI 544
+G+G +G VY+ ++ TGEV+ LK++ R+D E E ++E
Sbjct: 11 IGEGTYGVVYKARNKLTGEVVALKKI-RLDTETEGVPSTAIRE----------------- 52
Query: 545 NNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQD-PGQPLPWG 603
+++L+ L+H N+++ + V++ + KL LV E++ LK+ + +P
Sbjct: 53 --------ISLLKELNHPNIVKLLDVIHTENKLYLVFEFLH-QDLKKFMDASALTGIPLP 103
Query: 604 QRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVREVG 640
++ + G+ + HS ++HRDL QN L+ G
Sbjct: 104 LIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEG 140
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding
protein, zinc finger; NMR {Coturnix japonica} SCOP:
g.39.1.3 g.39.1.3 PDB: 2o10_A
Length = 81
Score = 71.7 bits (176), Expect = 9e-16
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 12 CAGCLNNIVEDEYVQALSQEWHTDCFRCSACDVMLDNW-YFEKDGLLFCKEDYNGKYGEA 70
C C + E VQ + +H CF C C LD+ D ++CK Y KYG
Sbjct: 10 CGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPK 69
Query: 71 CQNCGQ 76
GQ
Sbjct: 70 GYGYGQ 75
Score = 49.3 bits (118), Expect = 6e-08
Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 3/73 (4%)
Query: 68 GEACQNCGQM-MSGPVMVVGDHKFHPECFKCTSCSCCIGDGESYALVERSILYCGLCYKR 126
G C CG+ + FH CF C C + + A+ + + +YC CY +
Sbjct: 7 GNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDST-TVAIHD-AEVYCKSCYGK 64
Query: 127 QMQPLGRAKDAAF 139
+ P G
Sbjct: 65 KYGPKGYGYGQGA 77
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex,
layered beta- sheets, transferas; HET: SEP TPO; 3.20A
{Solanum pimpinellifolium} PDB: 3hgk_A*
Length = 321
Score = 77.6 bits (192), Expect = 1e-15
Identities = 38/152 (25%), Positives = 62/152 (40%), Gaps = 29/152 (19%)
Query: 487 LLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLINN 546
L+G G FG+VY+ R+ +V + K + + F E
Sbjct: 46 LIGHGVFGKVYKGVLRDGAKVAL-KRRTPESSQGIEEFETE------------------- 85
Query: 547 LHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELL---QDPGQPLPWG 603
+ L H +++ IG + ++ L+ +Y+ G LK L P + W
Sbjct: 86 ------IETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWE 139
Query: 604 QRVNFARDIAAGMTYLHSMNLIHRDLNSQNCL 635
QR+ A G+ YLH+ +IHRD+ S N L
Sbjct: 140 QRLEICIGAARGLHYLHTRAIIHRDVKSINIL 171
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 80
Score = 71.2 bits (175), Expect = 1e-15
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 11 TCAGCLNNIVEDEYVQALSQEWHTDCFRCSACDVML-DNWYFEKDGLLFCKEDYNGKYGE 69
C GC N V + Y+ A+ WH +CF C C +FE DG FC+ Y+ + G
Sbjct: 17 KCGGC-NRPVLENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRGS 75
Query: 70 AC 71
Sbjct: 76 GP 77
Score = 64.3 bits (157), Expect = 3e-13
Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 2/73 (2%)
Query: 55 GLLFCKEDYNGKYGEACQNCGQMMSGPVMVVGDHKFHPECFKCTSCSCCIGDGESYALVE 114
+D+ + C C + + + D +HPECF C C G + L
Sbjct: 2 SSGSSGKDFLAMFSPKCGGCNRPVLENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDG 61
Query: 115 RSILYCGLCYKRQ 127
R +C L Y +
Sbjct: 62 R--PFCELHYHHR 72
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding,
serine/threonine-protein kinase, CGD3_920, transferase;
HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB:
3dfa_A 3ma6_A*
Length = 287
Score = 76.9 bits (190), Expect = 1e-15
Identities = 35/161 (21%), Positives = 62/161 (38%), Gaps = 44/161 (27%)
Query: 485 GPLLGQGFFGQVYRVTHRETGEVMVLKEL--YRVDEEAEKNFLKESKQGLIYLIDLGSHG 542
+LG+G FG+V + R T + +K + + L+E
Sbjct: 27 VCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILRE--------------- 71
Query: 543 LINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLPW 602
V +L+ L H N+++ +L +V E GG L + +
Sbjct: 72 ----------VELLKKLDHPNIMKLFEILEDSSSFYIVGELYTGGELFDEII-------- 113
Query: 603 GQRVNF--------ARDIAAGMTYLHSMNLIHRDLNSQNCL 635
+R F + + +G+TY+H N++HRDL +N L
Sbjct: 114 -KRKRFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENIL 153
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer,
anticancer drug design; HET: YCF; 1.77A {Homo sapiens}
PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A*
2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A*
2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Length = 322
Score = 77.3 bits (191), Expect = 1e-15
Identities = 31/165 (18%), Positives = 54/165 (32%), Gaps = 43/165 (26%)
Query: 485 GPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLI 544
LG G G+V R+T + + A K K + +
Sbjct: 15 SKTLGSGACGEVKLAFERKTCK-----------KVAIKIISKRKFAIGSAREADPALNVE 63
Query: 545 NNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLPWGQ 604
++ +L+ L+H +I+ + +V E + GG EL
Sbjct: 64 T------EIEILKKLNHPCIIKIKNF-FDAEDYYIVLELMEGG---ELFD---------- 103
Query: 605 RV------------NFARDIAAGMTYLHSMNLIHRDLNSQNCLVR 637
+V + + + YLH +IHRDL +N L+
Sbjct: 104 KVVGNKRLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLS 148
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding,
serine/threonine-protein kinase, transferase; 1.85A
{Giardia lamblia} PDB: 3gc0_A*
Length = 329
Score = 77.3 bits (191), Expect = 2e-15
Identities = 38/152 (25%), Positives = 68/152 (44%), Gaps = 31/152 (20%)
Query: 488 LGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAE---KNFLKESKQGLIYLIDLGSHGLI 544
LG+G +G+VY+ T E + +K + R++ E E ++E
Sbjct: 42 LGEGTYGEVYKAIDTVTNETVAIKRI-RLEHEEEGVPGTAIRE----------------- 83
Query: 545 NNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLPWGQ 604
V++L+ L H N+I V++ + +L+L+ EY LK+ + D +
Sbjct: 84 --------VSLLKELQHRNIIELKSVIHHNHRLHLIFEYAE-NDLKKYM-DKNPDVSMRV 133
Query: 605 RVNFARDIAAGMTYLHSMNLIHRDLNSQNCLV 636
+F + G+ + HS +HRDL QN L+
Sbjct: 134 IKSFLYQLINGVNFCHSRRCLHRDLKPQNLLL 165
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain,
OPA-interacting protein 1, zyxin related protein 1
(ZRP-1), structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 81
Score = 70.5 bits (173), Expect = 2e-15
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 12 CAGCLNNIVEDEYVQALSQEWHTDCFRCSACDVMLDN--WYFEKDGLLFCKEDYNGKYGE 69
CA C + + D ++A+ + +H CF C C LD + + + C ED++ K+
Sbjct: 18 CATC-SQPILDRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFAS 76
Query: 70 AC 71
Sbjct: 77 GP 78
Score = 63.9 bits (156), Expect = 5e-13
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Query: 59 CKEDYNGKYGEACQNCGQMMSGPVMVVGDHKFHPECFKCTSCSCCIGDGESYALVERSIL 118
E E C C Q + ++ +HP CF C C + G + + S +
Sbjct: 6 SGEGCYVATLEKCATCSQPILDRILRAMGKAYHPGCFTCVVCHRGLD-GIPFTVDATSQI 64
Query: 119 YCGLCYKRQ 127
+C + R+
Sbjct: 65 HCIEDFHRK 73
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 73
Score = 70.1 bits (171), Expect = 2e-15
Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 66 KYGEACQNCGQMMSGPVMVVGDHKFHPECFKCTSCSCCIGDGESYALVERSILYCGLCYK 125
C +C + ++G V+ G+ +HP C C C +GE ++ S ++ C +
Sbjct: 3 SGSSGCDSCEKYITGRVLEAGEKHYHPSCALCVRCGQMFAEGEEM-YLQGSSIWHPACRQ 61
Score = 40.5 bits (94), Expect = 9e-05
Identities = 9/61 (14%), Positives = 18/61 (29%), Gaps = 3/61 (4%)
Query: 11 TCAGCLNNIVEDEYVQALSQEWHTDCFRCSACDVMLDNW--YFEKDGLLFCKEDYNGKYG 68
C C + ++A + +H C C C M + + ++
Sbjct: 7 GCDSC-EKYITGRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAART 65
Query: 69 E 69
E
Sbjct: 66 E 66
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase,
serine/threonine-protein kinase, ATP-binding,
phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP:
d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Length = 288
Score = 76.0 bits (188), Expect = 2e-15
Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 31/156 (19%)
Query: 488 LGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAE---KNFLKESKQGLIYLIDLGSHGLI 544
+G+G +G VY+ + GE LK++ R+++E E ++E
Sbjct: 10 IGEGTYGVVYKAQNN-YGETFALKKI-RLEKEDEGIPSTTIRE----------------- 50
Query: 545 NNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLPWGQ 604
+++L+ L H N+++ V++ ++L LV E++ LK+LL L
Sbjct: 51 --------ISILKELKHSNIVKLYDVIHTKKRLVLVFEHLDQD-LKKLLDVCEGGLESVT 101
Query: 605 RVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVREVG 640
+F + G+ Y H ++HRDL QN L+ G
Sbjct: 102 AKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREG 137
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding;
HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A*
3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A*
Length = 351
Score = 76.5 bits (189), Expect = 3e-15
Identities = 36/161 (22%), Positives = 67/161 (41%), Gaps = 40/161 (24%)
Query: 488 LGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNF----LKESKQGLIYLIDLGSHGL 543
+GQG FG+V++ HR+TG+ + LK++ ++ E E F L+E
Sbjct: 25 IGQGTFGEVFKARHRKTGQKVALKKV-LMENEKE-GFPITALRE---------------- 66
Query: 544 INNLHCFSQVAVLRSLHHHNVIRFIGVLYKDR--------KLNLVTEYIAGGTLKELLQD 595
+ +L+ L H NV+ I + + LV ++ L LL +
Sbjct: 67 ---------IKILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEH-DLAGLLSN 116
Query: 596 PGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLV 636
+ + + G+ Y+H ++HRD+ + N L+
Sbjct: 117 VLVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLI 157
>3niz_A Rhodanese family protein; structural genomics, structural genomics
consortium, SGC, phosphotransferase, cyclin dependent
kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB:
2qkr_A*
Length = 311
Score = 76.1 bits (188), Expect = 3e-15
Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 31/156 (19%)
Query: 488 LGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAE---KNFLKESKQGLIYLIDLGSHGLI 544
+G+G +G VY+ G ++ LK + R+D E E ++E
Sbjct: 29 VGEGTYGVVYKAKDS-QGRIVALKRI-RLDAEDEGIPSTAIRE----------------- 69
Query: 545 NNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLPWGQ 604
+++L+ LHH N++ I V++ +R L LV E++ LK++L + L Q
Sbjct: 70 --------ISLLKELHHPNIVSLIDVIHSERCLTLVFEFMEKD-LKKVLDENKTGLQDSQ 120
Query: 605 RVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVREVG 640
+ + G+ + H ++HRDL QN L+ G
Sbjct: 121 IKIYLYQLLRGVAHCHQHRILHRDLKPQNLLINSDG 156
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle;
NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Length = 192
Score = 73.5 bits (180), Expect = 4e-15
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 12 CAGCLNNIVEDEYVQALSQEWHTDCFRCSACDVMLDN-WYFEKDGLLFCKEDYNGKYGEA 70
C C + E V + WH CFRC+ C L++ +KDG ++CK Y +G
Sbjct: 118 CPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPK 177
Query: 71 CQNCGQ 76
GQ
Sbjct: 178 GFGFGQ 183
Score = 70.8 bits (173), Expect = 3e-14
Identities = 23/116 (19%), Positives = 33/116 (28%), Gaps = 2/116 (1%)
Query: 11 TCAGCLNNIVEDEYVQALSQEWHTDCFRCSACDVMLDNW-YFEKDGLLFCKEDYNGKYGE 69
C C + E VQ +H CF C C LD+ ++CK Y KYG
Sbjct: 9 KCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGP 68
Query: 70 ACQNCGQMMSGPVMVVGDHKFHPECFKCTSCSCCIGDGESYALVERSILYCGLCYK 125
+ G G+ + + A C C +
Sbjct: 69 KGKGKGMGAGTLSTDKGESLGIKYEEGQS-HRPTNPNASRMAQKVGGSDGCPRCGQ 123
Score = 59.6 bits (144), Expect = 2e-10
Identities = 17/101 (16%), Positives = 33/101 (32%), Gaps = 3/101 (2%)
Query: 33 HTDCFRCSACDVMLDNWYFEKDGLLFCKEDYNGKYGEACQNCGQ-MMSGPVMVVGDHKFH 91
+ S + + + C CGQ + + ++ +H
Sbjct: 80 LSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWH 139
Query: 92 PECFKCTSCSCCIGDGESYALVERSILYCGLCYKRQMQPLG 132
CF+C C + + + A + +YC CY + P G
Sbjct: 140 KSCFRCAKCGKSL-ESTTLADKD-GEIYCKGCYAKNFGPKG 178
Score = 48.5 bits (115), Expect = 1e-06
Identities = 19/115 (16%), Positives = 31/115 (26%), Gaps = 4/115 (3%)
Query: 68 GEACQNCGQM-MSGPVMVVGDHKFHPECFKCTSCSCCIGDGESYALVERSILYCGLCYKR 126
G+ C C + + FH CF C C + + +YC CY +
Sbjct: 7 GKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDE--IYCKSCYGK 64
Query: 127 QMQPLGRAKDAAFPMMRKPHCIRLVEIQPSAHCSQGIKLALDTSQPAPPVFSNLC 181
+ P G + I+ S + S+ C
Sbjct: 65 KYGPKG-KGKGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGC 118
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1;
protein-nucleotide complex, ATP-binding, endoplasmic
reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces
cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A*
3sdj_A*
Length = 434
Score = 76.7 bits (189), Expect = 5e-15
Identities = 40/161 (24%), Positives = 60/161 (37%), Gaps = 37/161 (22%)
Query: 483 VRGPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHG 542
V +LG G G V G + +K R+ + L E
Sbjct: 18 VSEKILGYGSSGTVV-FQGSFQGRPVAVK---RMLIDFCDIALME--------------- 58
Query: 543 LINNLHCFSQVAVLR-SLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLP 601
+ +L S H NVIR+ DR L + E L++L++
Sbjct: 59 ----------IKLLTESDDHPNVIRYYCSETTDRFLYIALEL-CNLNLQDLVESKNVSDE 107
Query: 602 WGQRV------NFARDIAAGMTYLHSMNLIHRDLNSQNCLV 636
+ + R IA+G+ +LHS+ +IHRDL QN LV
Sbjct: 108 NLKLQKEYNPISLLRQIASGVAHLHSLKIIHRDLKPQNILV 148
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken
structural genomics/proteomics initiative, RSGI,
NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 72
Score = 68.6 bits (168), Expect = 8e-15
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 12 CAGCLNNIVE-DEYVQALSQEWHTDCFRCSACDVMLDNW-YFEKDGLLFCKEDYNGKYGE 69
C+ C ++ ++ Q WH CF CS C+ L + + G +C Y K+
Sbjct: 8 CSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFAS 67
Query: 70 AC 71
Sbjct: 68 GP 69
Score = 49.3 bits (118), Expect = 5e-08
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 66 KYGEACQNCGQ--MMSGPVMVVGDHKFHPECFKCTSCSCCIGDGESYALVERSILYCGLC 123
C CG+ M + G +H CF C+ C +G S+ + + YC C
Sbjct: 3 SGSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSR-SFVPDKGAH-YCVPC 60
Query: 124 YKRQ 127
Y+ +
Sbjct: 61 YENK 64
>1x61_A Thyroid receptor interacting protein 6; LIM domain,
OPA-interacting protein 1, zyxin related protein 1
(ZRP-1), structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 72
Score = 68.6 bits (168), Expect = 9e-15
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 11 TCAGCLNNIVEDE-YVQALSQEWHTDCFRCSACDVMLDN-WYFEKDGLLFCKEDYNGKYG 68
C GC ++V D V AL + +H CF CS C L ++ + +C+ Y
Sbjct: 7 GCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATL- 65
Query: 69 EACQNCG 75
E+ + G
Sbjct: 66 ESGPSSG 72
Score = 46.3 bits (110), Expect = 5e-07
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 71 CQNCGQMMSGPVMVVG--DHKFHPECFKCTSCSCCIGDGESYALVERSILYCGLCYKRQ 127
C CG+ + G V D FH CF C++C + YA+ R YC CY
Sbjct: 8 CGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERR--AYCEGCYVAT 64
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK,
transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB:
2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Length = 307
Score = 74.5 bits (184), Expect = 1e-14
Identities = 40/162 (24%), Positives = 62/162 (38%), Gaps = 26/162 (16%)
Query: 477 FRASDLVRGP-LLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYL 535
F + G +G+G FG VY+ T V V K+L +++
Sbjct: 27 FDERPISVGGNKMGEGGFGVVYKGYVNNT-TVAV-KKL-------AAMVDITTEEL---- 73
Query: 536 IDLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQD 595
++ V+ H N++ +G L LV Y+ G+L + L
Sbjct: 74 ----------KQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSC 123
Query: 596 PG--QPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCL 635
PL W R A+ A G+ +LH + IHRD+ S N L
Sbjct: 124 LDGTPPLSWHMRCKIAQGAANGINFLHENHHIHRDIKSANIL 165
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A
{Mycobacterium tuberculosis}
Length = 309
Score = 74.6 bits (184), Expect = 1e-14
Identities = 32/163 (19%), Positives = 51/163 (31%), Gaps = 41/163 (25%)
Query: 487 LLGQGFFGQVYRVTHRETGE---VMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGL 543
L+G+G G VY + ++ E D +E
Sbjct: 41 LVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQRE---------------- 84
Query: 544 INNLHCFSQVAVLRSLHHHNVI------RFIGVLYKDRKLNLVTEYIAGGTLKELLQDPG 597
++ A L +V+ G LY + I G L +L+ G
Sbjct: 85 -------ARTAG--RLQEPHVVPIHDFGEIDGQLY------VDMRLINGVDLAAMLRRQG 129
Query: 598 QPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVREVG 640
PL + V R I + + H+ HRD+ +N LV
Sbjct: 130 -PLAPPRAVAIVRQIGSALDAAHAAGATHRDVKPENILVSADD 171
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3,
LIM-domain protein DRAL, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 70
Score = 67.8 bits (166), Expect = 1e-14
Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 2/62 (3%)
Query: 11 TCAGCLNNIVEDEYVQALSQEWHTDCFRCSACDVMLDN-WYFEKDGLLFCKEDYNGKYGE 69
C C + V Q WH +CF C+AC L + +D +C + Y
Sbjct: 7 GCVQC-KKPITTGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYAS 65
Query: 70 AC 71
Sbjct: 66 GP 67
Score = 55.0 bits (133), Expect = 5e-10
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 66 KYGEACQNCGQMMSGPVMVVGDHKFHPECFKCTSCSCCIGDGESYALVERSILYCGLCYK 125
C C + ++ + + +H ECF CT+C + G+ + + YC C+
Sbjct: 3 SGSSGCVQCKKPITTGGVTYREQPWHKECFVCTACRKQLS-GQRFTARDDFA-YCLNCFC 60
Query: 126 RQ 127
Sbjct: 61 DL 62
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase,
PASK, protein kinase, drug discovery, ATP-bindin kinase,
nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Length = 335
Score = 74.4 bits (183), Expect = 1e-14
Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 19/153 (12%)
Query: 485 GPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLI 544
LG G FG V+ +E + +V+K F+K+ K I+ G
Sbjct: 29 MSPLGSGAFGFVWTAVDKEKNKEVVVK------------FIKKEKVLEDCWIEDPKLG-- 74
Query: 545 NNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTE-YIAGGTLKELLQDPGQPLPWG 603
++A+L + H N+I+ + + LV E + +G L + + L
Sbjct: 75 ---KVTLEIAILSRVEHANIIKVLDIFENQGFFQLVMEKHGSGLDLFAFIDRHPR-LDEP 130
Query: 604 QRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLV 636
R + + + YL ++IHRD+ +N ++
Sbjct: 131 LASYIFRQLVSAVGYLRLKDIIHRDIKDENIVI 163
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin
dependent protein kinase, Mg synaptic plasticity,
pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB:
3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Length = 351
Score = 74.6 bits (184), Expect = 2e-14
Identities = 32/158 (20%), Positives = 59/158 (37%), Gaps = 31/158 (19%)
Query: 485 GPLLGQGFFGQVYRVTHRETGEV----MVLKELYRVDEEAEKNFLKESKQGLIYLIDLGS 540
++G+G F V R +RETG+ +V + LK
Sbjct: 29 CEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLK-------------- 74
Query: 541 HGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTL-KELLQDPGQP 599
+ ++ L H +++ + D L +V E++ G L E+++
Sbjct: 75 ----------REASICHMLKHPHIVELLETYSSDGMLYMVFEFMDGADLCFEIVKRADAG 124
Query: 600 LPWGQRV--NFARDIAAGMTYLHSMNLIHRDLNSQNCL 635
+ + V ++ R I + Y H N+IHRD+ L
Sbjct: 125 FVYSEAVASHYMRQILEALRYCHDNNIIHRDVKPHCVL 162
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform;
transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A
1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A
1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Length = 365
Score = 74.4 bits (183), Expect = 2e-14
Identities = 37/201 (18%), Positives = 71/201 (35%), Gaps = 37/201 (18%)
Query: 447 NSPPKSLRPACDLSRTRSRSFRVEASKSRIFRASDLVRGPLLGQGFFGQVYRVTHRETGE 506
++ PK S A+ ++ D ++G+G V R HR TG
Sbjct: 63 DAQPKGTENLYFQSMGPEDELPDWAAAKEFYQKYDP--KDVIGRGVSSVVRRCVHRATGH 120
Query: 507 VMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLINNLHCFSQVAVLRSLHHH-NVI 565
E A K +++ ++ + +LR + H ++I
Sbjct: 121 -----------EFAVKIMEVTAERLSPEQLEEVREATRR------ETHILRQVAGHPHII 163
Query: 566 RFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLPWGQRVNF--------ARDIAAGMT 617
I + LV + + G L + L ++V R + ++
Sbjct: 164 TLIDSYESSSFMFLVFDLMRKGELFDYLT---------EKVALSEKETRSIMRSLLEAVS 214
Query: 618 YLHSMNLIHRDLNSQNCLVRE 638
+LH+ N++HRDL +N L+ +
Sbjct: 215 FLHANNIVHRDLKPENILLDD 235
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint,
transferase-transferase inhib complex; HET: S25; 1.60A
{Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A*
2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Length = 323
Score = 73.9 bits (182), Expect = 2e-14
Identities = 33/151 (21%), Positives = 63/151 (41%), Gaps = 25/151 (16%)
Query: 485 GPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLI 544
LG+G +G+V +R T E + +K + + + + +
Sbjct: 12 VQTLGEGAYGEVQLAVNRVTEEAVAVKIV-------DMKRAVDCPENI------------ 52
Query: 545 NNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLPWGQ 604
++ + + L+H NV++F G + L EY +GG L + ++ +P
Sbjct: 53 -----KKEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDI-GMPEPD 106
Query: 605 RVNFARDIAAGMTYLHSMNLIHRDLNSQNCL 635
F + AG+ YLH + + HRD+ +N L
Sbjct: 107 AQRFFHQLMAGVVYLHGIGITHRDIKPENLL 137
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET:
YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A*
2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A*
2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A*
2x8i_A* 2xey_A* 2xez_A* ...
Length = 276
Score = 73.0 bits (180), Expect = 2e-14
Identities = 33/151 (21%), Positives = 63/151 (41%), Gaps = 25/151 (16%)
Query: 485 GPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLI 544
LG+G +G+V +R T E + +K + + + + +
Sbjct: 12 VQTLGEGAYGEVQLAVNRVTEEAVAVKIV-------DMKRAVDCPENI------------ 52
Query: 545 NNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLPWGQ 604
++ + + L+H NV++F G + L EY +GG L + ++ +P
Sbjct: 53 -----KKEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDI-GMPEPD 106
Query: 605 RVNFARDIAAGMTYLHSMNLIHRDLNSQNCL 635
F + AG+ YLH + + HRD+ +N L
Sbjct: 107 AQRFFHQLMAGVVYLHGIGITHRDIKPENLL 137
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine
protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3,
ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A*
1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Length = 328
Score = 73.9 bits (182), Expect = 2e-14
Identities = 36/166 (21%), Positives = 72/166 (43%), Gaps = 26/166 (15%)
Query: 488 LGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLINNL 547
+G+G F +V H TG + +K + +K L + +
Sbjct: 23 IGKGNFAKVKLARHILTGREVAIKII-------DKTQLNPTSLQKL-------------- 61
Query: 548 HCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLPWGQRVN 607
F +V +++ L+H N+++ V+ ++ L L+ EY +GG + + L G + + +
Sbjct: 62 --FREVRIMKILNHPNIVKLFEVIETEKTLYLIMEYASGGEVFDYLVAHG-RMKEKEARS 118
Query: 608 FARDIAAGMTYLHSMNLIHRDLNSQNCLVREVGSG--FDFHLGQIY 651
R I + + Y H ++HRDL ++N L+ + DF +
Sbjct: 119 KFRQIVSAVQYCHQKRIVHRDLKAENLLLDADMNIKIADFGFSNEF 164
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85;
cyclin-dependent kinase, signaling protein,transfera
cycle complex; HET: MES AGS; 2.90A {Saccharomyces
cerevisiae} PDB: 2pk9_A*
Length = 317
Score = 73.0 bits (180), Expect = 4e-14
Identities = 37/160 (23%), Positives = 69/160 (43%), Gaps = 34/160 (21%)
Query: 488 LGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNF--LKESKQGLIYLIDLGSHGLIN 545
LG G + VY+ ++ TG + LKE+ ++D E ++E
Sbjct: 13 LGNGTYATVYKGLNKTTGVYVALKEV-KLDSEEGTPSTAIRE------------------ 53
Query: 546 NLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDP-----GQPL 600
+++++ L H N++R V++ + KL LV E++ LK+ + + L
Sbjct: 54 -------ISLMKELKHENIVRLYDVIHTENKLTLVFEFMD-NDLKKYMDSRTVGNTPRGL 105
Query: 601 PWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVREVG 640
F + G+ + H ++HRDL QN L+ + G
Sbjct: 106 ELNLVKYFQWQLLQGLAFCHENKILHRDLKPQNLLINKRG 145
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding,
nucleotide-binding, serine/threonine-protein kinase,
transferase; HET: TPO; 1.72A {Caenorhabditis elegans}
PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Length = 284
Score = 72.2 bits (178), Expect = 4e-14
Identities = 35/161 (21%), Positives = 56/161 (34%), Gaps = 40/161 (24%)
Query: 485 GPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLI 544
LG+G F V R H+ TG K + K Q L
Sbjct: 11 KEELGKGAFSVVRRCVHKTTGLEFAAKIINT------KKLSARDFQKL------------ 52
Query: 545 NNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLPWGQ 604
+ + R L H N++R + ++ LV + + GG EL +D
Sbjct: 53 -----EREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGG---ELFED------IVA 98
Query: 605 RVNF--------ARDIAAGMTYLHSMNLIHRDLNSQNCLVR 637
R + + I + Y HS ++HR+L +N L+
Sbjct: 99 REFYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLA 139
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated,
transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A*
2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Length = 362
Score = 73.1 bits (180), Expect = 4e-14
Identities = 34/161 (21%), Positives = 55/161 (34%), Gaps = 40/161 (24%)
Query: 485 GPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLI 544
LG+G F V R H+ TG K + K Q L
Sbjct: 34 KEELGKGAFSVVRRCVHKTTGLEFAAKIINT------KKLSARDFQKL------------ 75
Query: 545 NNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLPWGQ 604
+ + R L H N++R + ++ LV + + GG L E +
Sbjct: 76 -----EREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIV---------A 121
Query: 605 RVNF--------ARDIAAGMTYLHSMNLIHRDLNSQNCLVR 637
R + + I + Y HS ++HR+L +N L+
Sbjct: 122 REFYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLA 162
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition,
kinase-INH complex, rubredoxin fold, TPR domain,
transferase; HET: AXX; 2.40A {Mycobacterium
tuberculosis}
Length = 681
Score = 74.5 bits (183), Expect = 5e-14
Identities = 36/165 (21%), Positives = 63/165 (38%), Gaps = 47/165 (28%)
Query: 487 LLGQGFFGQVYRVT-HRETGEVMVLKEL-YRVDEEAEKNFLKESKQGLIYLIDLGSHGLI 544
+ G G +Y G +VLK L + D EA+ + E +
Sbjct: 87 CIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQ--------------- 131
Query: 545 NNLHCFSQVAVLRSLHHHNVIR-----------FIGVLYKDRKLNLVTEYIAGGTLKELL 593
L + H ++++ V Y +V EY+ G +LK
Sbjct: 132 ----------FLAEVVHPSIVQIFNFVEHTDRHGDPVGY------IVMEYVGGQSLKRSK 175
Query: 594 QDPGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVRE 638
GQ LP + + + +I ++YLHS+ L++ DL +N ++ E
Sbjct: 176 ---GQKLPVAEAIAYLLEILPALSYLHSIGLVYNDLKPENIMLTE 217
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 80
Score = 66.6 bits (163), Expect = 5e-14
Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 2/62 (3%)
Query: 11 TCAGCLNNIVEDEYVQALSQEWHTDCFRCSACDVMLDN-WYFEKDGLLFCKEDYNGKYGE 69
CA C + + V Q WH +C C+ C L + +D +C + +
Sbjct: 17 RCARC-SKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFAS 75
Query: 70 AC 71
Sbjct: 76 GP 77
Score = 59.3 bits (144), Expect = 2e-11
Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 2/71 (2%)
Query: 57 LFCKEDYNGKYGEACQNCGQMMSGPVMVVGDHKFHPECFKCTSCSCCIGDGESYALVERS 116
Y K+ C C + ++ + D +H EC CT C + G+ + +
Sbjct: 4 GSSGPCYENKFAPRCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLA-GQQFTSRDED 62
Query: 117 ILYCGLCYKRQ 127
YC C+
Sbjct: 63 P-YCVACFGEL 72
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus
subsp}
Length = 294
Score = 72.3 bits (178), Expect = 5e-14
Identities = 41/159 (25%), Positives = 61/159 (38%), Gaps = 31/159 (19%)
Query: 487 LLGQGFFGQVYR----VTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHG 542
LG G VY + + + + + R EE K F +E
Sbjct: 18 KLGGGGMSTVYLAEDTILNIKVA-IKAIFIPPREKEETLKRFEREVHN------------ 64
Query: 543 LINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLPW 602
+ L H N++ I V +D LV EYI G TL E ++ G PL
Sbjct: 65 ----------SS---QLSHQNIVSMIDVDEEDDCYYLVMEYIEGPTLSEYIESHG-PLSV 110
Query: 603 GQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVREVGS 641
+NF I G+ + H M ++HRD+ QN L+ +
Sbjct: 111 DTAINFTNQILDGIKHAHDMRIVHRDIKPQNILIDSNKT 149
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein,
LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3
g.39.1.3
Length = 76
Score = 66.6 bits (163), Expect = 5e-14
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 12 CAGCLNNIVEDEYVQALSQEWHTDCFRCSACDVMLDN-WYFEKDGLLFCKED-YNGKYGE 69
C C + E V +L ++WH C +C C L + + E +G +C Y+ +G
Sbjct: 3 CPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGP 62
Query: 70 ACQNCGQMMS 79
G S
Sbjct: 63 KGFGRGGAES 72
Score = 42.0 bits (99), Expect = 3e-05
Identities = 12/57 (21%), Positives = 17/57 (29%), Gaps = 2/57 (3%)
Query: 71 CQNCGQM-MSGPVMVVGDHKFHPECFKCTSCSCCIGDGESYALVERSILYCGLCYKR 126
C C + + +H C KC C + G +A E CY
Sbjct: 3 CPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSG-GHAEHEGKPYCNHPCYSA 58
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1;
LMO2(LIM2)-LDB1(LID), chimera, fusion protein,
oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Length = 123
Score = 67.8 bits (165), Expect = 7e-14
Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 11 TCAGCLNNIVEDEYV-QALSQEWHTDCFRCSACDVMLD--NWYFEKDGLLFCKEDYNGKY 67
CA C I E + + +H +CF+C+AC + Y + + C++D
Sbjct: 10 LCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWT 69
Query: 68 GEACQNCGQMMSGP 81
+ G SG
Sbjct: 70 KINGGSGGSGGSGG 83
Score = 57.4 bits (138), Expect = 3e-10
Identities = 21/106 (19%), Positives = 34/106 (32%), Gaps = 9/106 (8%)
Query: 63 YNGKYG--EACQNCGQMMSG--PVMVVGDHKFHPECFKCTSCSCCIGDGESYALVERSIL 118
Y +G C +C + + M V D +H ECFKC +C G+ Y L+ I
Sbjct: 1 YLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDI- 59
Query: 119 YCGLCYKRQMQPLGRAKDAAFPMMRKPHCIRLVEIQPSAHCSQGIK 164
C + + + +V G +
Sbjct: 60 VCEQDI----YEWTKINGGSGGSGGSGGDVMVVGEPTLMGGEFGDE 101
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase,
phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus
musculus}
Length = 332
Score = 72.2 bits (177), Expect = 7e-14
Identities = 32/199 (16%), Positives = 63/199 (31%), Gaps = 45/199 (22%)
Query: 474 SRIFRASDLVRGPLLGQGFFGQVYRVTHRETGEVMVLKEL-YRVDEEAEKNFLKESKQGL 532
SR +D +G+G FG V+ ++ +K + E A + ++E K
Sbjct: 2 SRY--LTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKA-- 57
Query: 533 IYLIDLGSHGLINNLHCFSQ------------------------------------VAVL 556
L L G++ + + + + +
Sbjct: 58 --LAKLEHPGIVRYFNAWLETPPEKWQEEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRM 115
Query: 557 RSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELL--QDPGQPLPWGQRVNFARDIAA 614
N + + L + + LK+ + + + G ++ IA
Sbjct: 116 DPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHGVCLHIFIQIAE 175
Query: 615 GMTYLHSMNLIHRDLNSQN 633
+ +LHS L+HRDL N
Sbjct: 176 AVEFLHSKGLMHRDLKPSN 194
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif,
transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A*
2hw6_A
Length = 316
Score = 71.9 bits (177), Expect = 8e-14
Identities = 28/156 (17%), Positives = 57/156 (36%), Gaps = 43/156 (27%)
Query: 483 VRGPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHG 542
++ +LG+G +V + T + +K + + +E
Sbjct: 16 LQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFRE--------------- 60
Query: 543 LINNLHCFSQVAVLRSLHHH-NVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLP 601
V +L H NV+ I ++ + LV E + GG++ +
Sbjct: 61 ----------VEMLYQCQGHRNVLELIEFFEEEDRFYLVFEKMRGGSILSHIH------- 103
Query: 602 WGQRVNF--------ARDIAAGMTYLHSMNLIHRDL 629
+R +F +D+A+ + +LH+ + HRDL
Sbjct: 104 --KRRHFNELEASVVVQDVASALDFLHNKGIAHRDL 137
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains
protein 1, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 69
Score = 65.9 bits (161), Expect = 8e-14
Identities = 14/63 (22%), Positives = 20/63 (31%), Gaps = 2/63 (3%)
Query: 11 TCAGCLNNIVEDEYVQALSQEWHTDCFRCSACDVMLDNW-YFEKDGLLFCKEDYNGKYGE 69
C C N + + Q WH DCF C C L + + +C + Y
Sbjct: 7 GCVKC-NKAITSGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSG 65
Query: 70 ACQ 72
Sbjct: 66 PSS 68
Score = 54.7 bits (132), Expect = 6e-10
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 71 CQNCGQMMSGPVMVVGDHKFHPECFKCTSCSCCIGDGESYALVERSILYCGLCYKRQMQP 130
C C + ++ + D +H +CF C +CS + G+ + VE YC CYK +
Sbjct: 8 CVKCNKAITSGGITYQDQPWHADCFVCVTCSKKLA-GQRFTAVEDQY-YCVDCYKNFVSG 65
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding
protein complex, transferase metal protein complex,
nucleus; HET: ANP; 2.65A {Homo sapiens}
Length = 305
Score = 71.5 bits (176), Expect = 8e-14
Identities = 47/159 (29%), Positives = 71/159 (44%), Gaps = 33/159 (20%)
Query: 485 GPLLGQGFFGQVYRVTHRETGE---VMVL-KELYRVDEEAEKNFLKESKQGLIYLIDLGS 540
G LLG+G +G+V V ET V +L K+ R E N KE
Sbjct: 10 GDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKE------------- 56
Query: 541 HGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYK--DRKLNLVTEYIAGGTLKELLQD-PG 597
+ +LR L H NVI+ + VLY +K+ +V EY G ++E+L P
Sbjct: 57 ------------IQLLRRLRHKNVIQLVDVLYNEEKQKMYMVMEYCVCG-MQEMLDSVPE 103
Query: 598 QPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLV 636
+ P Q + + G+ YLHS ++H+D+ N L+
Sbjct: 104 KRFPVCQAHGYFCQLIDGLEYLHSQGIVHKDIKPGNLLL 142
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta
7 linker; phosphorylation, cytosolic,
transferase-transferase inhibitor complex; HET: DB8;
3.55A {Homo sapiens}
Length = 444
Score = 72.7 bits (179), Expect = 9e-14
Identities = 30/164 (18%), Positives = 56/164 (34%), Gaps = 50/164 (30%)
Query: 485 GPLLGQGFFGQVYRVTHRETGE-----VMVLKELYRVDEEAEKNFLKESKQGLIYLIDLG 539
LG+G F V R G+ ++ K+L D + +
Sbjct: 16 FEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLER---------------- 59
Query: 540 SHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQP 599
+ + R L H N++R + ++ L+ + + GG EL +D
Sbjct: 60 ------------EARICRLLKHPNIVRLHDSISEEGHHYLIFDLVTGG---ELFED---- 100
Query: 600 LPWGQRVNF--------ARDIAAGMTYLHSMNLIHRDLNSQNCL 635
R + + I + + H M ++HR+L +N L
Sbjct: 101 --IVAREYYSEADASHCIQQILEAVLHCHQMGVVHRNLKPENLL 142
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase,
serine/threonine-protein, ATP-binding,
calmodulin-binding; HET: ATP; 2.20A {Oryctolagus
cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Length = 298
Score = 71.1 bits (175), Expect = 1e-13
Identities = 33/163 (20%), Positives = 59/163 (36%), Gaps = 34/163 (20%)
Query: 485 GPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLI 544
+LG+G V R H+ T + E A K + G ++
Sbjct: 22 KEILGRGVSSVVRRCIHKPTCK-----------EYAVKIIDV-TGGGSFSAEEVQE---- 65
Query: 545 NNLHCFSQVAVLRSLHHH-NVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLPWG 603
+V +LR + H N+I+ + LV + + G L + L
Sbjct: 66 LREATLKEVDILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLT--------- 116
Query: 604 QRVNF--------ARDIAAGMTYLHSMNLIHRDLNSQNCLVRE 638
++V R + + LH +N++HRDL +N L+ +
Sbjct: 117 EKVTLSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLDD 159
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK,
ATP-binding, metal-binding, NUCL binding,
serine/threonine-protein kinase, transferase; 2.00A
{Homo sapiens} PDB: 3kn5_A
Length = 325
Score = 71.6 bits (176), Expect = 1e-13
Identities = 27/162 (16%), Positives = 60/162 (37%), Gaps = 46/162 (28%)
Query: 483 VRGPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHG 542
++ LG+G F + H+++ + +K + + E
Sbjct: 14 LKDKPLGEGSFSICRKCVHKKSNQAFAVKIISKRMEAN---------------------- 51
Query: 543 LINNLHCFSQVAVLRSLHHH-NVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLP 601
++ L+ H N+++ V + LV E + GG EL +
Sbjct: 52 ------TQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGG---ELFER------ 96
Query: 602 WGQRVNF--------ARDIAAGMTYLHSMNLIHRDLNSQNCL 635
++ +F R + + ++++H + ++HRDL +N L
Sbjct: 97 IKKKKHFSETEASYIMRKLVSAVSHMHDVGVVHRDLKPENLL 138
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 65.1 bits (159), Expect = 1e-13
Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
Query: 12 CAGCLNNIVEDEY-VQALSQEWHTDCFRCSACDVML-DNWYFEKDGLLFCKEDYNGKYGE 69
C C I+ ++ WH CF C C + + KD FC Y ++
Sbjct: 8 CQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHAS 67
Query: 70 AC 71
Sbjct: 68 GP 69
Score = 49.3 bits (118), Expect = 6e-08
Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
Query: 66 KYGEACQNCGQ--MMSGPVMVVGDHKFHPECFKCTSCSCCIGDGESYALVERSILYCGLC 123
CQ C + M M +H CF C C IG S+ + +C C
Sbjct: 3 SGSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTK-SFIPKDNQN-FCVPC 60
Query: 124 YKRQ 127
Y++Q
Sbjct: 61 YEKQ 64
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 70
Score = 65.1 bits (159), Expect = 2e-13
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 12 CAGCLNNIVEDEYVQALSQEWHTDCFRCSACDVML-DNWYFEKDGLLFCKEDYNGKYGEA 70
C C + ++A++ WH +CFRC C +L D + + G C+ +N +
Sbjct: 8 CHQC-GEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASG 66
Query: 71 CQNCG 75
+ G
Sbjct: 67 P-SSG 70
Score = 61.7 bits (150), Expect = 2e-12
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 71 CQNCGQMMSGPVMVVGDHKFHPECFKCTSCSCCIGDGESYALVERSILYCGLCYKRQM 128
C CG+ + G V+ ++ +HPECF+C C + D R C C+ R+
Sbjct: 8 CHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGR--HLCRPCHNREK 63
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM
domains protein 1, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 65.1 bits (159), Expect = 2e-13
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 11 TCAGCLNNIV-EDEYVQALSQEWHTDCFRCSACDVMLDN-WYFEKDGLLFCKEDYNGKYG 68
C GC IV D+ V+ WH DCF CS C ++ +F K +C + K+
Sbjct: 17 KCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFA 76
Query: 69 EAC 71
Sbjct: 77 SGP 79
Score = 54.7 bits (132), Expect = 8e-10
Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 4/75 (5%)
Query: 55 GLLFCKEDYNGKYGEACQNCGQ--MMSGPVMVVGDHKFHPECFKCTSCSCCIGDGESYAL 112
+ + C+ C + + + +H +CF C++C IG G S+
Sbjct: 2 SSGSSGKCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTG-SFFP 60
Query: 113 VERSILYCGLCYKRQ 127
YC C++ +
Sbjct: 61 KGEDF-YCVTCHETK 74
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle,
phosphorylation, ATP-BIN cell division, disease
mutation, kinase; 3.00A {Homo sapiens}
Length = 308
Score = 69.9 bits (172), Expect = 4e-13
Identities = 48/187 (25%), Positives = 72/187 (38%), Gaps = 42/187 (22%)
Query: 488 LGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGL---- 543
+G G +G VY+ +G + LK + RV G GL
Sbjct: 17 IGVGAYGTVYKARDPHSGHFVALKSV-RVPNGGG-----------------GGGGLPIST 58
Query: 544 ---INNLHCFSQVAVLRSLHHHNVIRFIGVLYKDR-----KLNLVTEYIAGGTLKELLQD 595
+ L L + H NV+R + V R K+ LV E++ L+ L
Sbjct: 59 VREVALLR------RLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQ-DLRTYLDK 111
Query: 596 -PGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVREVGS---GFDFHLGQIY 651
P LP + R G+ +LH+ ++HRDL +N LV G+ DF L +IY
Sbjct: 112 APPPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGTVKLA-DFGLARIY 170
Query: 652 LIYVPYT 658
+ T
Sbjct: 171 SYQMALT 177
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase;
HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB:
1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A*
1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A*
3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Length = 420
Score = 70.5 bits (173), Expect = 5e-13
Identities = 35/158 (22%), Positives = 64/158 (40%), Gaps = 39/158 (24%)
Query: 488 LGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLINNL 547
+G G FG VY+ ++GE++ +K +V ++ +E
Sbjct: 62 IGNGSFGVVYQAKLCDSGELVAIK---KVLQDKRFK-NRE-------------------- 97
Query: 548 HCFSQVAVLRSLHHHNVIRFIGVLY------KDRKLNLVTEYIAGGTLKELLQD---PGQ 598
+ ++R L H N++R Y + LNLV +Y+ T+ + + Q
Sbjct: 98 -----LQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYV-PETVYRVARHYSRAKQ 151
Query: 599 PLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLV 636
LP + + + Y+HS + HRD+ QN L+
Sbjct: 152 TLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLL 189
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling,
transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A
3zuu_A 3uc4_A 3ujg_A 3udb_A
Length = 361
Score = 69.7 bits (171), Expect = 6e-13
Identities = 37/152 (24%), Positives = 66/152 (43%), Gaps = 27/152 (17%)
Query: 485 GPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLI 544
+G G FG + + T E++ +K + R G
Sbjct: 25 VKDIGSGNFGVARLMRDKLTKELVAVKYIER--------------------------GAA 58
Query: 545 NNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLPWGQ 604
+ + ++ RSL H N++RF V+ L ++ EY +GG L E + + G+ +
Sbjct: 59 IDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIMEYASGGELYERICNAGR-FSEDE 117
Query: 605 RVNFARDIAAGMTYLHSMNLIHRDLNSQNCLV 636
F + + +G++Y HSM + HRDL +N L+
Sbjct: 118 ARFFFQQLLSGVSYCHSMQICHRDLKLENTLL 149
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2;
ATP-binding, cholesterol biosynthesis, fatty acid
biosynthesis;kinase, lipid synthesis; 1.85A {Homo
sapiens} PDB: 3aqv_A* 2yza_A*
Length = 276
Score = 68.4 bits (168), Expect = 8e-13
Identities = 34/151 (22%), Positives = 62/151 (41%), Gaps = 23/151 (15%)
Query: 485 GPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLI 544
G LG G FG+V H+ TG + +K L K + S ++
Sbjct: 16 GDTLGVGTFGKVKIGEHQLTGHKVAVK------------ILNRQK--------IRSLDVV 55
Query: 545 NNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLPWGQ 604
+ ++ L+ H ++I+ V+ +V EY++GG L + + G + +
Sbjct: 56 GKI--KREIQNLKLFRHPHIIKLYQVISTPTDFFMVMEYVSGGELFDYICKHG-RVEEME 112
Query: 605 RVNFARDIAAGMTYLHSMNLIHRDLNSQNCL 635
+ I + + Y H ++HRDL +N L
Sbjct: 113 ARRLFQQILSAVDYCHRHMVVHRDLKPENVL 143
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1;
ILK, integrin-linked kinase, pinch, ankyrin repeat,
ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Length = 72
Score = 62.8 bits (153), Expect = 1e-12
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 11 TCAGCLNNIVEDE-YVQALSQEWHTDCFRCSACDVMLDN-WYFEKDGLLFCKEDYNGKYG 68
TC C E V + + +H CF C+ C ++E +G +C+ D+ +
Sbjct: 13 TCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72
Score = 52.8 bits (127), Expect = 3e-09
Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 4/68 (5%)
Query: 62 DYNGKYGEACQNCGQ--MMSGPVMVVGDHKFHPECFKCTSCSCCIGDGESYALVERSILY 119
+ G C+ C + ++ +H +CF C C +G Y R Y
Sbjct: 5 YFQGSASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGR--KY 62
Query: 120 CGLCYKRQ 127
C ++
Sbjct: 63 CEHDFQML 70
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor,
spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis
compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB:
3kga_A* 3m42_A*
Length = 299
Score = 68.1 bits (167), Expect = 1e-12
Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 39/174 (22%)
Query: 469 VEASKSRIFRASDLVRGPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKES 528
++ K+ I + +LG G G+V ++ ++ T E LK L +E
Sbjct: 8 LQIKKNAIIDDYKVT-SQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARRE- 60
Query: 529 KQGLIYLIDLGSHGLINNLHCFSQVAVLRSLHHH-NVIRFIGV----LYKDRKLNLVTEY 583
V + +++R + V + L +V E
Sbjct: 61 ------------------------VELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMEC 96
Query: 584 IAGGTLKELLQDPGQPLPWGQR--VNFARDIAAGMTYLHSMNLIHRDLNSQNCL 635
+ GG L +QD G + +R + I + YLHS+N+ HRD+ +N L
Sbjct: 97 LDGGELFSRIQDRGDQ-AFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLL 149
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2,
autoinhibitory, ATP-binding, nucleotide phosphorylation,
serine/threonine-protein kinase; 2.00A {Mus musculus}
PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Length = 342
Score = 68.5 bits (168), Expect = 1e-12
Identities = 35/158 (22%), Positives = 51/158 (32%), Gaps = 55/158 (34%)
Query: 485 GPLLGQGFFGQVYRVTHRETGEV----MVLKELYRVDEEAEKNFLKESKQGLIYLIDLGS 540
+G G + R H+ T ++ K EE E
Sbjct: 27 KEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRDPTEEIE------------------- 67
Query: 541 HGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRK-LNLVTEYIAGGTLKELLQDPGQP 599
+LR H N+I V Y D K + +VTE + GG ELL
Sbjct: 68 -------------ILLRYGQHPNIITLKDV-YDDGKYVYVVTELMKGG---ELLDK---- 106
Query: 600 LPWGQRVNF--------ARDIAAGMTYLHSMNLIHRDL 629
++ F I + YLH+ ++HRDL
Sbjct: 107 --ILRQKFFSEREASAVLFTITKTVEYLHAQGVVHRDL 142
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural
genomics consortium, TBSG domain, signal transduction;
HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB:
3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A*
3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Length = 311
Score = 68.4 bits (168), Expect = 1e-12
Identities = 31/168 (18%), Positives = 59/168 (35%), Gaps = 47/168 (27%)
Query: 487 LLGQGFFGQVYRVT----HRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHG 542
+LG G +V+ HR+ V VL+ D F +E++
Sbjct: 19 ILGFGGMSEVHLARDLRDHRDVA-VKVLRADLARDPSFYLRFRREAQN------------ 65
Query: 543 LINNLHCFSQVAVLRSLHHHNVI----------RFIGVLYKDRKLNLVTEYIAGGTLKEL 592
A +L+H ++ + Y +V EY+ G TL+++
Sbjct: 66 ----------AA---ALNHPAIVAVYDTGEAETPAGPLPY------IVMEYVDGVTLRDI 106
Query: 593 LQDPGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVREVG 640
+ G P+ + + D + + H +IHRD+ N ++
Sbjct: 107 VHTEG-PMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATN 153
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His
protein, LIM and senescent cell antigen-like domains 1,
structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 79
Score = 62.5 bits (152), Expect = 1e-12
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 12 CAGCLNNIVEDEYVQALSQEWHTDCFRCSACDVMLDNWYFEKDGLLFCKEDYNGKYGEAC 71
C C + I++++ + + +H D F C+ C L E G L+C ++ K G +
Sbjct: 18 CQKC-HAIIDEQPLIFKNDPYHPDHFNCANCGKELTADARELKGELYCLPCHD-KMGVSG 75
Query: 72 QNCG 75
+ G
Sbjct: 76 PSSG 79
Score = 50.9 bits (122), Expect = 2e-08
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 71 CQNCGQMMSGPVMVVGDHKFHPECFKCTSCSCCIGDGESYALVERSILYCGLCY 124
CQ C ++ ++ + +HP+ F C +C + A + LYC C+
Sbjct: 18 CQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTAD---ARELKGELYCLPCH 68
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR;
3.30A {Ustilago maydis}
Length = 394
Score = 68.9 bits (169), Expect = 2e-12
Identities = 34/158 (21%), Positives = 62/158 (39%), Gaps = 40/158 (25%)
Query: 488 LGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLINNL 547
+G G FG V++ E+ EV +K++ D+ + +E
Sbjct: 48 IGNGSFGVVFQAKLVESDEV-AIKKV-LQDKRFK---NRE-------------------- 82
Query: 548 HCFSQVAVLRSLHHHNVIRFIGVLY------KDRKLNLVTEYIAGGTLKELLQD---PGQ 598
+ ++R + H NV+ Y + LNLV EY+ T+ + Q
Sbjct: 83 -----LQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNLVLEYV-PETVYRASRHYAKLKQ 136
Query: 599 PLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLV 636
+P + + + Y+HS+ + HRD+ QN L+
Sbjct: 137 TMPMLLIKLYMYQLLRSLAYIHSIGICHRDIKPQNLLL 174
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation,
staurosporine, transfe; HET: STU; 2.70A {Homo sapiens}
SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Length = 400
Score = 68.6 bits (168), Expect = 2e-12
Identities = 42/221 (19%), Positives = 71/221 (32%), Gaps = 51/221 (23%)
Query: 428 KGPVAARVLSSRNRRDAWYNSPPKSLRPACDLSRTRSRSFRVEASKSRIFRASDLVRGPL 487
P A + A + P + P ++ K+ I + +
Sbjct: 11 PVPFPAPAPPPQPPTPALPHPPAQPPPPPPQQFPQFHVKSGLQIKKNAIIDDYKVT-SQV 69
Query: 488 LGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLINNL 547
LG G G+V ++ ++ T E LK L +E
Sbjct: 70 LGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARRE-------------------- 104
Query: 548 HCFSQVAVLRSLHHH-NVIRFIGV----LYKDRKLNLVTEYIAGGTLKELLQDPGQPLPW 602
V + +++R + V + L +V E + GG L +QD G
Sbjct: 105 -----VELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGD---- 155
Query: 603 GQRVNF--------ARDIAAGMTYLHSMNLIHRDLNSQNCL 635
F + I + YLHS+N+ HRD+ +N L
Sbjct: 156 ---QAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLL 193
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM-
protein 2, SLIM 2, FHL3, SLIM2, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 82
Score = 62.1 bits (151), Expect = 2e-12
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 11 TCAGCLNNIVEDE-YVQALSQEWHTDCFRCSACDVMLDNW-YFEKDGLLFCKEDYNGKYG 68
TCA C I D + + +H CFRC C L + + +D L C + Y +
Sbjct: 17 TCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFS 76
Query: 69 EAC 71
Sbjct: 77 SGP 79
Score = 60.2 bits (146), Expect = 1e-11
Identities = 16/75 (21%), Positives = 21/75 (28%), Gaps = 4/75 (5%)
Query: 58 FCKEDYNGKYGEACQNCGQ--MMSGPVMVVGDHKFHPECFKCTSCSCCIGDGESYALVER 115
Y+ + C C Q + D FH CF+C C + D
Sbjct: 5 SSGPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSE 64
Query: 116 SILYCGLCYKRQMQP 130
L C CY
Sbjct: 65 --LLCNDCYCSAFSS 77
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 61.8 bits (150), Expect = 2e-12
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Query: 11 TCAGCLNNIV---EDEYVQALSQEWHTDCFRCSACDVMLDNW-YFEKDGLLFCKEDYNGK 66
CAGC N I +Y+ ++WH DCF C C + L + + + C +
Sbjct: 7 GCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDI 66
Query: 67 YGEAC 71
G +
Sbjct: 67 SGPSS 71
Score = 52.9 bits (127), Expect = 3e-09
Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 6/69 (8%)
Query: 66 KYGEACQNCGQMMSGP----VMVVGDHKFHPECFKCTSCSCCIGDGESYALVERSILYCG 121
C C +SG + + ++H +CF C CS + ER + C
Sbjct: 3 SGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFL--TERDDILCP 60
Query: 122 LCYKRQMQP 130
C K P
Sbjct: 61 DCGKDISGP 69
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 77
Score = 61.6 bits (150), Expect = 3e-12
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 11 TCAGCLNNIVEDE-YVQALSQEWHTDCFRCSACDVMLDN-WYFEKDGLLFCKEDYNGKYG 68
TC C E V + + +H CF C+ C ++E +G +C+ D+ +
Sbjct: 13 TCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72
Score = 53.2 bits (128), Expect = 2e-09
Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 4/74 (5%)
Query: 59 CKEDYNGKYGEACQNCGQ--MMSGPVMVVGDHKFHPECFKCTSCSCCIGDGESYALVERS 116
+ N C+ C + ++ +H +CF C C +G Y R
Sbjct: 2 SEFMANALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGR- 60
Query: 117 ILYCGLCYKRQMQP 130
YC ++ P
Sbjct: 61 -KYCEHDFQMLFAP 73
>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB,
inhibitor, LY333531, diabetes, cancer, transferase,
serine/threonine-protein kinase; HET: SEP LY4; 1.7A
{Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A*
1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A*
3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A*
3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ...
Length = 310
Score = 67.3 bits (165), Expect = 3e-12
Identities = 37/176 (21%), Positives = 58/176 (32%), Gaps = 27/176 (15%)
Query: 462 TRSRSFRVEASKSRIFRASDLVRGPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAE 521
S + R R D G +LG+G F V T +K L E
Sbjct: 12 AGSLQHAQPPPQPRKKRPEDFKFGKILGEGSFSTVVLARELATSREYAIKIL-------E 64
Query: 522 KNFLKESKQGLIYLIDLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVT 581
K + + + + + + V+ L H ++ D KL
Sbjct: 65 KRHIIKENK-----VP----------YVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 109
Query: 582 EYIAGGTLKELLQDPGQ-PLPWGQRVNF-ARDIAAGMTYLHSMNLIHRDLNSQNCL 635
Y G L + ++ G F +I + + YLH +IHRDL +N L
Sbjct: 110 SYAKNGELLKYIRKIGSFDET---CTRFYTAEIVSALEYLHGKGIIHRDLKPENIL 162
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 91
Score = 62.2 bits (151), Expect = 3e-12
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 11 TCAGCLNNIVEDEYVQALSQEWHTDCFRCSACDVMLDNW-YFEKDGLLFCKEDYNGKYGE 69
TC C + E + A Q +H CFRCS C+ L Y G ++CK +N +
Sbjct: 17 TCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKS 76
Query: 70 ACQNCGQMMSGP 81
SGP
Sbjct: 77 KGNYDEGFGSGP 88
Score = 47.2 bits (112), Expect = 4e-07
Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 11/71 (15%)
Query: 68 GEACQNCGQMMSGPV-----MVVGDHKFHPECFKCTSCSCCIGDGESYALVERSILYCGL 122
E C C + V ++ FH CF+C+ C+ + G +YA + +YC
Sbjct: 15 RETCVECQK----TVYPMERLLANQQVFHISCFRCSYCNNKLSLG-TYASLH-GRIYCKP 68
Query: 123 CYKRQMQPLGR 133
+ + + G
Sbjct: 69 HFNQLFKSKGN 79
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1,
peptide drug, prostate cancer, transferase; HET: ANP;
1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A*
3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A*
2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A*
3cxw_A* 3cy3_A* 2bik_B* ...
Length = 320
Score = 66.6 bits (163), Expect = 4e-12
Identities = 42/230 (18%), Positives = 82/230 (35%), Gaps = 39/230 (16%)
Query: 447 NSPPKSLRPACDLSRTRSRSFRVEASKSRIFRASDLVRGPLLGQGFFGQVYRVTHRETGE 506
+S R + + ++ K + S GPLLG G FG VY
Sbjct: 10 HSSGLVPRGSHMAPCNDLHATKLAPGKEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNL 69
Query: 507 VMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLINNLHCFSQVAVLRSLHHH--NV 564
+ +K V+++ ++ + + + +V +L+ + V
Sbjct: 70 PVAIK---HVEKDRISDWGELPNGTRVPM----------------EVVLLKKVSSGFSGV 110
Query: 565 IRFIGVLYKDRKLNLVTEYIAGGTLKEL---LQDPGQPLPWGQRVNFARDIAAGMTYLHS 621
IR + + L+ E ++L + + G L +F + + + H+
Sbjct: 111 IRLLDWFERPDSFVLILERPEPV--QDLFDFITERG-ALQEELARSFFWQVLEAVRHCHN 167
Query: 622 MNLIHRDLNSQNCLVREVGSGFDFHLGQIYLIYVPYTLFILSAKTKKTYY 671
++HRD+ +N L+ D + G++ LI F A K T Y
Sbjct: 168 CGVLHRDIKDENILI-------DLNRGELKLID-----FGSGALLKDTVY 205
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A
{Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A
2fh9_A 3mn3_A
Length = 275
Score = 65.7 bits (161), Expect = 6e-12
Identities = 33/151 (21%), Positives = 60/151 (39%), Gaps = 24/151 (15%)
Query: 485 GPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLI 544
LG+G F +V H TG+ + LK + + L +
Sbjct: 18 VKTLGEGSFAKVKLAYHTTTGQKVALK------------IINKKV--------LAKSDMQ 57
Query: 545 NNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLPWGQ 604
+++ LR L H ++I+ V+ ++ +V EY AG L + + + +
Sbjct: 58 G--RIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVIEY-AGNELFDYIVQRD-KMSEQE 113
Query: 605 RVNFARDIAAGMTYLHSMNLIHRDLNSQNCL 635
F + I + + Y H ++HRDL +N L
Sbjct: 114 ARRFFQQIISAVEYCHRHKIVHRDLKPENLL 144
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1,
skeletal muscle LIM- protein 1, SLIM 1, structural
genomics NPPSFA; NMR {Homo sapiens}
Length = 77
Score = 60.6 bits (147), Expect = 6e-12
Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 7/77 (9%)
Query: 55 GLLFCKEDYNGKYGEACQNCGQMMSGP-----VMVVGDHKFHPECFKCTSCSCCIGDGES 109
+ Y + C C ++G V+ +H CF C CS + +
Sbjct: 2 SSGSSGDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRF 61
Query: 110 YALVERSILYCGLCYKR 126
E+ +YC C K+
Sbjct: 62 VFHQEQ--VYCPDCAKK 76
Score = 57.1 bits (138), Expect = 1e-10
Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
Query: 11 TCAGCLNNIV----EDEYVQALSQEWHTDCFRCSACDVML-DNWYFEKDGLLFCKEDYN 64
CAGC N I V Q WH CF C C V L + + ++C +
Sbjct: 17 KCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAK 75
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding,
nucleotide-binding, phosphoprotei
serine/threonine-protein kinase, transferase; 2.80A
{Schizosaccharomyces pombe}
Length = 336
Score = 66.1 bits (162), Expect = 7e-12
Identities = 36/151 (23%), Positives = 66/151 (43%), Gaps = 24/151 (15%)
Query: 485 GPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLI 544
LG+G FG+V TH +T + + LK + + LK+S
Sbjct: 14 RETLGEGSFGKVKLATHYKTQQKVALKFI-------SRQLLKKSDM-------------- 52
Query: 545 NNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLPWGQ 604
++ +++ L+ L H ++I+ V+ + +V EY AGG L + + + + +
Sbjct: 53 -HMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMVIEY-AGGELFDYIVEKK-RMTEDE 109
Query: 605 RVNFARDIAAGMTYLHSMNLIHRDLNSQNCL 635
F + I + Y H ++HRDL +N L
Sbjct: 110 GRRFFQQIICAIEYCHRHKIVHRDLKPENLL 140
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer,
leukemia, transferase, ATP-binding, proto- oncogene,
phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Length = 312
Score = 65.8 bits (161), Expect = 7e-12
Identities = 46/223 (20%), Positives = 71/223 (31%), Gaps = 37/223 (16%)
Query: 454 RPACDLSRTRSRSFRVEASKSRIFRASDLVRGPLLGQGFFGQVYRVTHRETGEVMVLKEL 513
+P K R ++ GPLLG+G FG V+ + +K
Sbjct: 5 KPLQGPPAPPGTPTPPPGGKDREAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIK-- 62
Query: 514 YRVDEEAEKNFLKESKQGLIYLIDLGSHGLINNLHCFSQVAVLRSLH----HHNVIRFIG 569
+ + S L +VA+L + H VIR +
Sbjct: 63 -VIPRNRVLGWSPLSDSVTCPL----------------EVALLWKVGAGGGHPGVIRLLD 105
Query: 570 VLYKDRKLNLVTEY-IAGGTLKELLQDPGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRD 628
LV E + L + + + G PL G F + A + + HS ++HRD
Sbjct: 106 WFETQEGFMLVLERPLPAQDLFDYITEKG-PLGEGPSRCFFGQVVAAIQHCHSRGVVHRD 164
Query: 629 LNSQNCLVREVGSGFDFHLGQIYLIYVPYTLFILSAKTKKTYY 671
+ +N L+ D G LI F A Y
Sbjct: 165 IKDENILI-------DLRRGCAKLID-----FGSGALLHDEPY 195
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB
structural genomics consortium, TBSG fold, FHAA,
transferase; 2.26A {Mycobacterium tuberculosis} PDB:
3oun_B* 3otv_A 3ouk_A
Length = 286
Score = 65.5 bits (160), Expect = 9e-12
Identities = 21/157 (13%), Positives = 45/157 (28%), Gaps = 31/157 (19%)
Query: 487 LLGQGFFGQVYRVTHRETGEVMVLKEL---YRVDEEAEKNFLKESKQGLIYLIDLGSHGL 543
G Q ++ + L + + ++ + L +
Sbjct: 38 FHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTL-------------- 83
Query: 544 INNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLPWG 603
L + V R + V++ +V E+I GG+L+E+ P+
Sbjct: 84 -----------RLSRIDKPGVARVLDVVHTRAGGLVVAEWIRGGSLQEVADTSPSPV--- 129
Query: 604 QRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVREVG 640
+ + +AA H + + V G
Sbjct: 130 GAIRAMQSLAAAADAAHRAGVALSIDHPSRVRVSIDG 166
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex,
ATP-binding, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo
sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X*
3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A*
3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Length = 336
Score = 65.8 bits (161), Expect = 1e-11
Identities = 38/181 (20%), Positives = 64/181 (35%), Gaps = 48/181 (26%)
Query: 467 FRVEASKSRIFRASDLVRGPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLK 526
F+ K + +LG G G+V HR TG+ LK LY +
Sbjct: 16 FQGPEPKKYAVTDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDS-----PKARQ 70
Query: 527 ESKQGLIYLIDLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGV----LYKDRKLNLVTE 582
E +++ ++ +++ + V + R L ++ E
Sbjct: 71 E----------------VDHHW--------QASGGPHIVCILDVYENMHHGKRCLLIIME 106
Query: 583 YIAGGTLKELLQDPGQPLPWGQRVNF--------ARDIAAGMTYLHSMNLIHRDLNSQNC 634
+ GG L +Q+ G F RDI + +LHS N+ HRD+ +N
Sbjct: 107 CMEGGELFSRIQERGD-------QAFTEREAAEIMRDIGTAIQFLHSHNIAHRDVKPENL 159
Query: 635 L 635
L
Sbjct: 160 L 160
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase,
nucleotide-binding, staurosporine-binding,
serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A
{Rattus norvegicus}
Length = 476
Score = 66.7 bits (163), Expect = 1e-11
Identities = 37/151 (24%), Positives = 64/151 (42%), Gaps = 23/151 (15%)
Query: 485 GPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLI 544
G LG G FG+V H TG + +K L ++Q + L +G
Sbjct: 21 GDTLGVGTFGKVKVGKHELTGHKVAVKIL--------------NRQKIRSLDVVG----- 61
Query: 545 NNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLPWGQ 604
++ L+ H ++I+ V+ + +V EY++GG L + + G L +
Sbjct: 62 ---KIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVMEYVSGGELFDYICKNG-RLDEKE 117
Query: 605 RVNFARDIAAGMTYLHSMNLIHRDLNSQNCL 635
+ I +G+ Y H ++HRDL +N L
Sbjct: 118 SRRLFQQILSGVDYCHRHMVVHRDLKPENVL 148
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent
kinase, cell cycle control, alpha/beta, complex
(inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP:
d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B*
2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B
2w9f_B
Length = 326
Score = 64.5 bits (158), Expect = 2e-11
Identities = 45/190 (23%), Positives = 71/190 (37%), Gaps = 50/190 (26%)
Query: 488 LGQGFFGQVYRVTH-RETGEVMVLKELYRVDEEA---------EKNFLKESKQGLIYLID 537
+G+G +G+V++ + G + LK + RV E L+
Sbjct: 19 IGEGAYGKVFKARDLKNGGRFVALKRV-RVQTGEEGMPLSTIREVAVLRH---------- 67
Query: 538 LGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLY-----KDRKLNLVTEYIAGGTLKEL 592
L + H NV+R V ++ KL LV E++ L
Sbjct: 68 ------------------LETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVD-QDLTTY 108
Query: 593 LQDPGQP-LPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVREVGS---GFDFHLG 648
L +P +P + + G+ +LHS ++HRDL QN LV G DF L
Sbjct: 109 LDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLA-DFGLA 167
Query: 649 QIYLIYVPYT 658
+IY + T
Sbjct: 168 RIYSFQMALT 177
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase,
inhibitor, transf transferase inhibitor complex; HET:
0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A*
2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A*
2h9v_A*
Length = 410
Score = 64.7 bits (158), Expect = 3e-11
Identities = 40/185 (21%), Positives = 70/185 (37%), Gaps = 45/185 (24%)
Query: 461 RTRSRSFRVEASKSRIFRASDLVRGPLLGQGFFGQVYRVTHRETGEVMVLK-----ELYR 515
+R + + R+ +A D ++G+G FG+V V H+ T +V +K E+ +
Sbjct: 51 LSRYKDTINKIRDLRM-KAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIK 109
Query: 516 VDE----EAEKNFLKESKQGLIYLIDLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVL 571
+ E++ + + + L Q
Sbjct: 110 RSDSAFFWEERDIMAFAN-----------SPWVVQLFYAFQ------------------- 139
Query: 572 YKDRKLNLVTEYIAGGTLKELLQDPGQPLPWGQRVNF-ARDIAAGMTYLHSMNLIHRDLN 630
DR L +V EY+ GG L L+ + P W + F ++ + +HSM IHRD+
Sbjct: 140 -DDRYLYMVMEYMPGGDLVNLMSNYDVPEKWAR---FYTAEVVLALDAIHSMGFIHRDVK 195
Query: 631 SQNCL 635
N L
Sbjct: 196 PDNML 200
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein
kinase, transferase; HET: SEP TPO ANP; 2.20A
{Arabidopsis thaliana} PDB: 3tl8_A*
Length = 326
Score = 63.8 bits (156), Expect = 4e-11
Identities = 41/155 (26%), Positives = 65/155 (41%), Gaps = 31/155 (20%)
Query: 487 LLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLINN 546
+LG+G FG+VY+ + V V K +E QG
Sbjct: 37 ILGRGGFGKVYKGRLADGTLVAV------------KRLKEERTQG-------------GE 71
Query: 547 LHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQ---PLPWG 603
L ++V ++ H N++R G + LV Y+A G++ L++ + PL W
Sbjct: 72 LQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWP 131
Query: 604 QRVNFARDIAAGMTYLH---SMNLIHRDLNSQNCL 635
+R A A G+ YLH +IHRD+ + N L
Sbjct: 132 KRQRIALGSARGLAYLHDHCDPKIIHRDVKAANIL 166
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain,
AN actin- interacting protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 76
Score = 58.3 bits (141), Expect = 4e-11
Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
Query: 11 TCAGCLNNIV---EDEYVQALSQEWHTDCFRCSACDVMLDNW-YFEKDGLLFCKEDYNGK 66
C C I +++ +WH++CF C C V L + ++ +FC++ +G
Sbjct: 7 GCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGM 66
Query: 67 YGEACQNCG 75
+
Sbjct: 67 DTDISGPSS 75
Score = 51.0 bits (122), Expect = 2e-08
Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 6/65 (9%)
Query: 66 KYGEACQNCGQMMSGP----VMVVGDHKFHPECFKCTSCSCCIGDGESYALVERSILYCG 121
C C + +SG + D ++H ECF C CS + + ++C
Sbjct: 3 SGSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKE--IFCQ 60
Query: 122 LCYKR 126
C
Sbjct: 61 KCGSG 65
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 76
Score = 58.2 bits (141), Expect = 4e-11
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 11 TCAGCLNNIVEDEYVQALSQEWHTDCFRCSACDVMLD-NWYFEKDGLLFCKEDY 63
C C + E V +L ++WH C +C C L + E DG FC +
Sbjct: 11 KCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPC 64
Score = 41.6 bits (98), Expect = 3e-05
Identities = 13/69 (18%), Positives = 21/69 (30%), Gaps = 4/69 (5%)
Query: 68 GEACQNCGQM-MSGPVMVVGDHKFHPECFKCTSCSCCIGDGESYALVERSILYCG-LCYK 125
C C + + +H C KC CS + G +A + +C CY
Sbjct: 9 ASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPG-GHAEHD-GKPFCHKPCYA 66
Query: 126 RQMQPLGRA 134
+
Sbjct: 67 TLFGSGPSS 75
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase,
ATP-BI nucleotide-binding, cardiac contractility, muscle
different; HET: BI8; 2.80A {Homo sapiens}
Length = 412
Score = 64.3 bits (157), Expect = 4e-11
Identities = 38/178 (21%), Positives = 70/178 (39%), Gaps = 33/178 (18%)
Query: 463 RSRSFRVEASKSRIFRASDLVRGPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEK 522
+ V + R+ + D ++G+G F +V V ++TG+V +K +
Sbjct: 45 WAEPIVVRLKEVRL-QRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIM--------- 94
Query: 523 NFLKESKQGLIYLIDLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLY----KDRKLN 578
+K ++ ++ + VL + R+I L+ + L
Sbjct: 95 -----NKWDMLKRGEVS--------CFREERDVLVNGDR----RWITQLHFAFQDENYLY 137
Query: 579 LVTEYIAGGTLKELLQDPGQPLPWGQRVNF-ARDIAAGMTYLHSMNLIHRDLNSQNCL 635
LV EY GG L LL G+ +P + F +I + +H + +HRD+ N L
Sbjct: 138 LVMEYYVGGDLLTLLSKFGERIP-AEMARFYLAEIVMAIDSVHRLGYVHRDIKPDNIL 194
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU;
CAMP-dependent protein kinase,catalytic mechanism, ATP
hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A
{Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E*
1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A*
1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A*
3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Length = 350
Score = 63.1 bits (154), Expect = 1e-10
Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 27/170 (15%)
Query: 468 RVEASKSRIFRASDLVRGPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKE 527
+ E + R LG G FG+V V H+E+G +K L +K + +
Sbjct: 29 KWETPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKIL-------DKQKVVK 81
Query: 528 SKQGLIYLIDLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGG 587
KQ I+ H ++ +L++++ +++ + L +V EY+AGG
Sbjct: 82 LKQ-----IE----------HTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGG 126
Query: 588 TLKELLQDPGQ-PLPWGQRVNF-ARDIAAGMTYLHSMNLIHRDLNSQNCL 635
+ L+ G+ P F A I YLHS++LI+RDL +N L
Sbjct: 127 EMFSHLRRIGRFSEP---HARFYAAQIVLTFEYLHSLDLIYRDLKPENLL 173
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA;
HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Length = 437
Score = 63.2 bits (154), Expect = 1e-10
Identities = 39/183 (21%), Positives = 65/183 (35%), Gaps = 43/183 (23%)
Query: 463 RSRSFRVEASKSRIFRASDLVRGPLLGQGFFGQVYRVTHRETGEV--M-VLK--ELYRVD 517
++ F + + R+ D ++G+G FG+V V + +V M +L E+ +
Sbjct: 58 WAKPFTSKVKQMRL-HREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRA 116
Query: 518 E----EAEKNFLKESKQGLIYLIDLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYK 573
E E++ L I LH Q
Sbjct: 117 ETACFREERDVLVNGD-----------SKWITTLHYAFQ--------------------D 145
Query: 574 DRKLNLVTEYIAGGTLKELLQDPGQPLPWGQRVNF-ARDIAAGMTYLHSMNLIHRDLNSQ 632
D L LV +Y GG L LL LP + F ++ + +H ++ +HRD+
Sbjct: 146 DNNLYLVMDYYVGGDLLTLLSKFEDRLP-EEMARFYLAEMVIAIDSVHQLHYVHRDIKPD 204
Query: 633 NCL 635
N L
Sbjct: 205 NIL 207
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex,
transferase,transcription; HET: BAX; 2.20A {Homo
sapiens}
Length = 405
Score = 62.5 bits (152), Expect = 2e-10
Identities = 49/186 (26%), Positives = 72/186 (38%), Gaps = 43/186 (23%)
Query: 465 RSFRVEASKSRIFRASDL--VRGPLLGQGFFGQVYRVTHRE--TGEVMVLKELYRVDEEA 520
F+V+ S R R DL G +G+G +G VY+ ++ + LK++
Sbjct: 5 YDFKVKLSSERE-RVEDLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQI------- 56
Query: 521 EKNFLKESKQGLIYLIDLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVL--YKDRKLN 578
E + S I L LR L H NVI V + DRK+
Sbjct: 57 EGTGISMSACREIAL--------------------LRELKHPNVISLQKVFLSHADRKVW 96
Query: 579 LVTEYIAGGTLKELL--------QDPGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLN 630
L+ +Y A L ++ LP G + I G+ YLH+ ++HRDL
Sbjct: 97 LLFDY-AEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANWVLHRDLK 155
Query: 631 SQNCLV 636
N LV
Sbjct: 156 PANILV 161
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 118
Score = 57.5 bits (138), Expect = 2e-10
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 260 LTISLVQVTYRYCTGMTNNPSVPRLDPRADLMSLHLGDRILEVNGTPVRDKPLQEVECLI 319
++++ + Y T + + ++H GDRILE+NGTPVR ++EVE I
Sbjct: 31 FSVTVESASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAI 90
Query: 320 RNTTDTV 326
+ T+ T+
Sbjct: 91 KQTSQTL 97
Score = 36.3 bits (83), Expect = 0.005
Identities = 4/33 (12%), Positives = 16/33 (48%)
Query: 140 PMMRKPHCIRLVEIQPSAHCSQGIKLALDTSQP 172
+ P+ + L+ + + C +G + ++++
Sbjct: 8 VQDQLPYSVTLISMPATTECRRGFSVTVESASS 40
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor,
transferase-transferase inhibitor CO; HET: ANP; 1.30A
{Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A*
3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A
3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A*
3owj_A* 3owk_A* ...
Length = 330
Score = 60.7 bits (148), Expect = 4e-10
Identities = 37/181 (20%), Positives = 66/181 (36%), Gaps = 46/181 (25%)
Query: 488 LGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLINNL 547
LG+G + +V+ + E +V+K L V + K +E K
Sbjct: 44 LGRGKYSEVFEAINITNNEKVVVKILKPVKK---KKIKREIK------------------ 82
Query: 548 HCFSQVAVLRSLHHH-NVIRFIGVLY--KDRKLNLVTEYIAGGTLKELLQDPGQPLPWGQ 604
+L +L N+I ++ R LV E++ K+L Q L
Sbjct: 83 -------ILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQ----TLTDYD 131
Query: 605 RVNFARDIAAGMTYLHSMNLIHRDL-------NSQNCLVREVGSGFDFHLGQIYLIYVPY 657
+ +I + Y HSM ++HRD+ + ++ +R D+ L + Y Y
Sbjct: 132 IRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRL----IDWGLAEFYHPGQEY 187
Query: 658 T 658
Sbjct: 188 N 188
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis,
transferase; 2.00A {Leishmania major}
Length = 360
Score = 60.8 bits (148), Expect = 4e-10
Identities = 36/163 (22%), Positives = 55/163 (33%), Gaps = 43/163 (26%)
Query: 488 LGQGFFGQVYRVTHRETGEVMVLKELY--RVDEEAEKNFLKESKQGLIYLIDLGSHGLIN 545
GQG FG V + TG + +K++ E +++
Sbjct: 31 AGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRFRNRELQIMQD------------------ 72
Query: 546 NLHCFSQVAVLRSLHHHNVIRFIGVLY-------KDRKLNLVTEYIAGGTLKELL---QD 595
L LHH N+++ Y +D LN+V EY+ TL
Sbjct: 73 ----------LAVLHHPNIVQLQSYFYTLGERDRRDIYLNVVMEYV-PDTLHRCCRNYYR 121
Query: 596 PGQPLPWGQRVNFARDIAAGMTYLH--SMNLIHRDLNSQNCLV 636
P F + + LH S+N+ HRD+ N LV
Sbjct: 122 RQVAPPPILIKVFLFQLIRSIGCLHLPSVNVCHRDIKPHNVLV 164
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural
genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Length = 458
Score = 61.0 bits (148), Expect = 6e-10
Identities = 36/155 (23%), Positives = 66/155 (42%), Gaps = 32/155 (20%)
Query: 488 LGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLINNL 547
+G G +G V + V+ +K++ RV E+ LI+
Sbjct: 61 IGTGSYGHVCEAYDKLEKRVVAIKKILRVFED-----------------------LIDCK 97
Query: 548 HCFSQVAVLRSLHHHNVIRFIGVLY-----KDRKLNLVTEYIAGGT-LKELLQDPGQPLP 601
++A+L L+H +V++ + ++ K +L +V E + K+L + P L
Sbjct: 98 RILREIAILNRLNHDHVVKVLDIVIPKDVEKFDELYVVLEIA--DSDFKKLFRTP-VYLT 154
Query: 602 WGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLV 636
++ G+ Y+HS ++HRDL NCLV
Sbjct: 155 ELHIKTLLYNLLVGVKYVHSAGILHRDLKPANCLV 189
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain,
kinase, transferase-transferase inhibitor COM; HET: 42Q;
1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A*
3hng_A*
Length = 359
Score = 60.3 bits (146), Expect = 7e-10
Identities = 38/212 (17%), Positives = 63/212 (29%), Gaps = 51/212 (24%)
Query: 476 IFRASDLVRGPLLGQGFFGQVYR-----VTHRETGEVMVLKELYRV-DEEAEKNFLKESK 529
R L G LG+G FGQV + T + +K L + + E K
Sbjct: 19 FPR-DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELK 77
Query: 530 ---------------------QGLIYLI-DLGSHG-----LINNLHCFSQVAVLRSLHHH 562
G + +I + G L + + F +
Sbjct: 78 ILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPY-KTKGARFR 136
Query: 563 NVIRFIGVLYKDRKLNLVT----------------EYIAGGTLKELLQDPGQPLPWGQRV 606
++G + D K L + + L +
Sbjct: 137 QGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEAPEDLYKDFLTLEHLI 196
Query: 607 NFARDIAAGMTYLHSMNLIHRDLNSQNCLVRE 638
++ +A GM +L S IHRDL ++N L+ E
Sbjct: 197 CYSFQVAKGMEFLASRKCIHRDLAARNILLSE 228
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP;
2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Length = 576
Score = 61.0 bits (148), Expect = 8e-10
Identities = 40/154 (25%), Positives = 62/154 (40%), Gaps = 31/154 (20%)
Query: 487 LLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLINN 546
+LG+G FG+V R TG++ K+L EK +K+ K
Sbjct: 191 VLGKGGFGEVCACQVRATGKMYACKKL-------EKKRIKKRKG---------------E 228
Query: 547 LHCFSQVAVLRSLHHHNVIRFIGVLY----KDRKLNLVTEYIAGGTLKELLQDPGQPLPW 602
++ +L ++ RF+ L L LV + GG LK + GQ
Sbjct: 229 AMALNEKQILEKVNS----RFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGQAGFP 284
Query: 603 GQRVNF-ARDIAAGMTYLHSMNLIHRDLNSQNCL 635
R F A +I G+ LH +++RDL +N L
Sbjct: 285 EARAVFYAAEICCGLEDLHRERIVYRDLKPENIL 318
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains;
zinc finger protein, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 53.0 bits (127), Expect = 3e-09
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 11 TCAGCLNNIVEDEYVQALSQEWHTDCFRCSACDVMLDNW---YFEKDGLLFCKEDYN 64
CA C ++ E + +H CFRC C+ L DG +C +
Sbjct: 17 LCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLP 73
Score = 40.7 bits (95), Expect = 8e-05
Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 9/64 (14%)
Query: 68 GEACQNCGQMMSGPV-----MVVGDHKFHPECFKCTSCSCCIGDGESYALVERSILYCGL 122
G+ C CG+ + + V H FH CF+C +C + G YC
Sbjct: 15 GDLCALCGE----HLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQ 70
Query: 123 CYKR 126
+
Sbjct: 71 HLPQ 74
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein
coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl
ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB:
3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Length = 543
Score = 57.9 bits (140), Expect = 6e-09
Identities = 40/157 (25%), Positives = 64/157 (40%), Gaps = 35/157 (22%)
Query: 487 LLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLINN 546
+LG+G FG+V+ + TG++ K+L K LK+ K
Sbjct: 192 VLGRGGFGEVFACQMKATGKLYACKKL-------NKKRLKKRKG---------------Y 229
Query: 547 LHCFSQVAVLRSLHHHNVIRFIGVLY-----KDRKLNLVTEYIAGGTLKELLQDPGQPLP 601
+ +L +H RFI L K L LV + GG ++ + + + P
Sbjct: 230 QGAMVEKKILAKVHS----RFIVSLAYAFETKT-DLCLVMTIMNGGDIRYHIYNVDEDNP 284
Query: 602 W--GQRVNF-ARDIAAGMTYLHSMNLIHRDLNSQNCL 635
R F I +G+ +LH N+I+RDL +N L
Sbjct: 285 GFQEPRAIFYTAQIVSGLEHLHQRNIIYRDLKPENVL 321
>3pvu_A Beta-adrenergic receptor kinase 1; transferase,
serine/threonine-protein kinase, ATP-binding, I
membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A*
3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A*
1bak_A
Length = 695
Score = 58.0 bits (140), Expect = 8e-09
Identities = 35/164 (21%), Positives = 61/164 (37%), Gaps = 40/164 (24%)
Query: 487 LLGQGFFGQVYRVTHRETGEVMVLKEL------YRVDEE---AEKNFLKESKQGLIYLID 537
++G+G FG+VY +TG++ +K L + E E+ L L+
Sbjct: 196 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLS--------LVS 247
Query: 538 LGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPG 597
G I + KL+ + + + GG L L G
Sbjct: 248 TGDCPFIVCMSYAFHT--------------------PDKLSFILDLMNGGDLHYHLSQHG 287
Query: 598 QPLPWGQRVNF-ARDIAAGMTYLHSMNLIHRDLNSQNCLVREVG 640
+ F A +I G+ ++H+ +++RDL N L+ E G
Sbjct: 288 VFSE--ADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHG 329
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open
conformation, transferase; HET: TPO; 2.80A
{Saccharomyces cerevisiae} SCOP: d.144.1.7
Length = 318
Score = 56.4 bits (137), Expect = 9e-09
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 27/155 (17%)
Query: 477 FRASDLVRGPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLI 536
+ D LG G FG+V+ + R G +K L +K + KQ +
Sbjct: 3 YSLQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVL-------KKEIVVRLKQ-----V 50
Query: 537 DLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDP 596
+ H + +L + H +IR G +++ ++ +YI GG L LL+
Sbjct: 51 E----------HTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKS 100
Query: 597 GQ-PLPWGQRVNF-ARDIAAGMTYLHSMNLIHRDL 629
+ P P F A ++ + YLHS ++I+RDL
Sbjct: 101 QRFPNP---VAKFYAAEVCLALEYLHSKDIIYRDL 132
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum,
ATP-binding, kinase, nucleoti binding; HET: PTR DRK;
2.65A {Cryptosporidium parvum iowa II}
Length = 383
Score = 56.7 bits (137), Expect = 1e-08
Identities = 33/161 (20%), Positives = 66/161 (40%), Gaps = 13/161 (8%)
Query: 488 LGQGFFGQVYRVTHRETGEVMVLKELYRVDEEA--EKNFLKESK-------QGLIYLIDL 538
LG G FG V V E+G+ LK++ + E + +K Y
Sbjct: 15 LGTGSFGIVCEVFDIESGKRFALKKVLQDPRYKNRELDIMKVLDHVNIIKLVDYFYTTGD 74
Query: 539 GSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQ---D 595
+++ + +++ I +++ LN++ EY+ TL ++L+
Sbjct: 75 EEPKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYV-PDTLHKVLKSFIR 133
Query: 596 PGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLV 636
G+ +P + + + ++HS+ + HRD+ QN LV
Sbjct: 134 SGRSIPMNLISIYIYQLFRAVGFIHSLGICHRDIKPQNLLV 174
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase,
CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo
sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A*
2wb8_A
Length = 336
Score = 55.7 bits (133), Expect = 2e-08
Identities = 34/206 (16%), Positives = 65/206 (31%), Gaps = 27/206 (13%)
Query: 474 SRIFRASDLVRGPLLGQGFFGQVYRVTHRETGEVMVLKEL-YRVDEEAEKNFLKESKQGL 532
S L R +G+G FG+V++ + +K + + + K ++ L
Sbjct: 14 SHCLPTEKLQRCEKIGEGVFGEVFQTIA--DHTPVAIKIIAIEGPDLVNGSHQKTFEEIL 71
Query: 533 IYLIDLGSHGLINNLHCFSQVAVLRSLHHHNVI---------------------RFIGVL 571
+I L++ C + H V
Sbjct: 72 PEIIISKELSLLSGEVCNRTEGFIGLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDF 131
Query: 572 YKDRKLNLVTEYIAGGTLKELLQDPGQPLPWGQRVNFARDIAAGMTYLH-SMNLIHRDLN 630
+KD +L +V E+ GG L Q + + + A + S+ HRDL+
Sbjct: 132 FKDDQLFIVLEFEFGGID--LEQMRTKLSSLATAKSILHQLTASLAVAEASLRFEHRDLH 189
Query: 631 SQNCLVREVGSGFDFHLGQIYLIYVP 656
N L+++ + +P
Sbjct: 190 WGNVLLKKTSLKKLHYTLNGKSSTIP 215
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2;
KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase,
structural genomics consortium; HET: SEP PTR IRB; 2.28A
{Homo sapiens} PDB: 3k2l_A*
Length = 429
Score = 55.5 bits (134), Expect = 3e-08
Identities = 32/159 (20%), Positives = 60/159 (37%), Gaps = 28/159 (17%)
Query: 487 LLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLI---YLIDLGSHGL 543
++G+G FGQV + + + + LK + +N + +Q L L
Sbjct: 104 VIGKGSFGQVVKAYDHKVHQHVALKMV--------RNEKRFHRQAAEEIRILEHLRKQDK 155
Query: 544 INNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELL-QDPGQPLPW 602
N ++ + +L + N + + E + L EL+ ++ Q
Sbjct: 156 DNTMNV---IHMLENFTFRN------------HICMTFELL-SMNLYELIKKNKFQGFSL 199
Query: 603 GQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVREVGS 641
FA I + LH +IH DL +N L+++ G
Sbjct: 200 PLVRKFAHSILQCLDALHKNRIIHCDLKPENILLKQQGR 238
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase,
transferase, serine/threonine-protein kinase; HET: TPO
ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A*
2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A*
3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A
1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Length = 337
Score = 54.5 bits (132), Expect = 4e-08
Identities = 38/160 (23%), Positives = 59/160 (36%), Gaps = 45/160 (28%)
Query: 487 LLGQGFFGQVYRVTHRETGEV--M-VL-KELYRVDEE-----AEKNFLKESKQGLIYLID 537
LLG+G FG+V V + TG M +L KE+ +E E L+ ++
Sbjct: 12 LLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTR-------- 63
Query: 538 LGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPG 597
H + L Q +L V EY GG L L
Sbjct: 64 ---HPFLTALKYAFQT--------------------HDRLCFVMEYANGGELFFHLSRER 100
Query: 598 Q-PLPWGQRVNF-ARDIAAGMTYLHSMNLIHRDLNSQNCL 635
R F +I + + YLHS ++++RD+ +N +
Sbjct: 101 VFTEE---RARFYGAEIVSALEYLHSRDVVYRDIKLENLM 137
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase,
apoptosis, ATP-binding, cytoplasm, endoplasmic
reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A
{Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Length = 373
Score = 55.0 bits (133), Expect = 4e-08
Identities = 48/199 (24%), Positives = 77/199 (38%), Gaps = 44/199 (22%)
Query: 448 SPPKSLRPACDLSRTRSRSFRVEASKSRIFRASDLVRGPLLGQGFFGQVYRVTHRETGEV 507
P+ + S+ + S + + SD ++G+G FG+V H+
Sbjct: 6 QEPELMNANPAPPPAPSQQINLGPSSNPHAKPSDFHFLKVIGKGSFGKVLLARHKAEEVF 65
Query: 508 --M-VLK--ELYRVDEE----AEKNFLKESKQGLIYLIDLGSHGLINNLHCFSQVAVLRS 558
+ VL+ + + EE +E+N L ++ H + LH Q
Sbjct: 66 YAVKVLQKKAILKKKEEKHIMSERNVLLKN----------VKHPFLVGLHFSFQT----- 110
Query: 559 LHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQ-PLPWGQRVNF-ARDIAAGM 616
KL V +YI GG L LQ P R F A +IA+ +
Sbjct: 111 ---------------ADKLYFVLDYINGGELFYHLQRERCFLEP---RARFYAAEIASAL 152
Query: 617 TYLHSMNLIHRDLNSQNCL 635
YLHS+N+++RDL +N L
Sbjct: 153 GYLHSLNIVYRDLKPENIL 171
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity,
atypical PKC, trans transferase substrate complex; HET:
TPO ADE; 2.40A {Mus musculus}
Length = 396
Score = 54.7 bits (132), Expect = 5e-08
Identities = 38/160 (23%), Positives = 65/160 (40%), Gaps = 44/160 (27%)
Query: 487 LLGQGFFGQVYRVTHRETGEV--M-VL-KELYRVDEE-----AEKNFLKESKQGLIYLID 537
++G+G + +V V ++T + M V+ KEL DE+ EK+ +++
Sbjct: 59 VIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQA--------- 109
Query: 538 LGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPG 597
+H + LH Q + +L V EY+ GG L +Q
Sbjct: 110 -SNHPFLVGLHSCFQT--------------------ESRLFFVIEYVNGGDLMFHMQRQR 148
Query: 598 Q-PLPWGQRVNF-ARDIAAGMTYLHSMNLIHRDLNSQNCL 635
+ P F + +I+ + YLH +I+RDL N L
Sbjct: 149 KLPEE---HARFYSAEISLALNYLHERGIIYRDLKLDNVL 185
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase,
transferase-transferase inhibito; HET: TPO 07U; 2.05A
{Homo sapiens}
Length = 353
Score = 54.2 bits (131), Expect = 6e-08
Identities = 39/160 (24%), Positives = 64/160 (40%), Gaps = 44/160 (27%)
Query: 487 LLGQGFFGQVYRVTHRETGEV--M-VL-KELYRVDEE-----AEKNFLKESKQGLIYLID 537
+LG+G FG+V +ETG++ + VL K++ D++ EK L +
Sbjct: 30 VLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLA--------- 80
Query: 538 LGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPG 597
+H + L C Q +L V E++ GG L +Q
Sbjct: 81 -RNHPFLTQLFCCFQT--------------------PDRLFFVMEFVNGGDLMFHIQKSR 119
Query: 598 Q-PLPWGQRVNF-ARDIAAGMTYLHSMNLIHRDLNSQNCL 635
+ R F A +I + + +LH +I+RDL N L
Sbjct: 120 RFDEA---RARFYAAEIISALMFLHDKGIIYRDLKLDNVL 156
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics,
structural genomics consortium, SGC, TR; HET: STU; 2.29A
{Homo sapiens}
Length = 384
Score = 54.3 bits (131), Expect = 6e-08
Identities = 30/155 (19%), Positives = 60/155 (38%), Gaps = 35/155 (22%)
Query: 487 LLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLINN 546
+G+G FG+V V +T ++ +K + K E + +
Sbjct: 22 AIGKGSFGKVCIVQKNDTKKMYAMKYM-------NKQKCVERNE-----VR--------- 60
Query: 547 LHCFSQVAVLRSLHHHNVIRFIGVLY----KDRKLNLVTEYIAGGTLKELLQDPGQ-PLP 601
+ F ++ +++ L H F+ L+ + + +V + + GG L+ LQ
Sbjct: 61 -NVFKELQIMQGLEH----PFLVNLWYSFQDEEDMFMVVDLLLGGDLRYHLQQNVHFKEE 115
Query: 602 WGQRVNF-ARDIAAGMTYLHSMNLIHRDLNSQNCL 635
V ++ + YL + +IHRD+ N L
Sbjct: 116 ---TVKLFICELVMALDYLQNQRIIHRDMKPDNIL 147
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo
sapiens} PDB: 3a8w_A* 1zrz_A*
Length = 345
Score = 54.2 bits (131), Expect = 6e-08
Identities = 38/160 (23%), Positives = 65/160 (40%), Gaps = 44/160 (27%)
Query: 487 LLGQGFFGQVYRVTHRETGEV--M-VL-KELYRVDEE-----AEKNFLKESKQGLIYLID 537
++G+G + +V V ++T + M V+ KEL DE+ EK+ +++
Sbjct: 16 VIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQA--------- 66
Query: 538 LGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPG 597
+H + LH Q + +L V EY+ GG L +Q
Sbjct: 67 -SNHPFLVGLHSCFQT--------------------ESRLFFVIEYVNGGDLMFHMQRQR 105
Query: 598 Q-PLPWGQRVNF-ARDIAAGMTYLHSMNLIHRDLNSQNCL 635
+ P F + +I+ + YLH +I+RDL N L
Sbjct: 106 KLPEE---HARFYSAEISLALNYLHERGIIYRDLKLDNVL 142
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane
protein; NMR {Homo sapiens} PDB: 2ev8_A
Length = 97
Score = 50.1 bits (120), Expect = 6e-08
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
LH+GD ILE+NGT V + + +++ ++ T +
Sbjct: 55 LHVGDEILEINGTNVTNHSVDQLQKAMKETKGMI 88
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase;
HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7
PDB: 2jed_A*
Length = 345
Score = 54.1 bits (131), Expect = 7e-08
Identities = 38/160 (23%), Positives = 64/160 (40%), Gaps = 44/160 (27%)
Query: 487 LLGQGFFGQVYRVTHRETGEV--M-VL-KELYRVDEE-----AEKNFLKESKQGLIYLID 537
+LG+G FG+V+ ++T + + L K++ +D++ EK L +
Sbjct: 24 MLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLA--------- 74
Query: 538 LGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPG 597
H + ++ C Q L V EY+ GG L +Q
Sbjct: 75 -WEHPFLTHMFCTFQT--------------------KENLFFVMEYLNGGDLMYHIQSCH 113
Query: 598 Q-PLPWGQRVNF-ARDIAAGMTYLHSMNLIHRDLNSQNCL 635
+ L R F A +I G+ +LHS +++RDL N L
Sbjct: 114 KFDLS---RATFYAAEIILGLQFLHSKGIVYRDLKLDNIL 150
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural
genomics CON SGC; 2.05A {Plasmodium berghei} PDB:
3nie_A*
Length = 432
Score = 54.0 bits (130), Expect = 9e-08
Identities = 33/158 (20%), Positives = 61/158 (38%), Gaps = 38/158 (24%)
Query: 488 LGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLINNL 547
+G+G +G VY + T + + +K++ R+ E + +
Sbjct: 34 IGRGSYGYVYLAYDKNTEKNVAIKKVNRMFE--------------------------DLI 67
Query: 548 HC---FSQVAVLRSLHHHNVIRFIGVLYKDRKLN-----LVTEYIAGGT-LKELLQDPGQ 598
C ++ +L L +IR ++ D L +V E + LK+L + P
Sbjct: 68 DCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDELYIVLEIA--DSDLKKLFKTP-I 124
Query: 599 PLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLV 636
L ++ G ++H +IHRDL NCL+
Sbjct: 125 FLTEEHIKTILYNLLLGENFIHESGIIHRDLKPANCLL 162
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1
protein, structural genomics, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 113
Score = 49.8 bits (119), Expect = 9e-08
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
LH GD +LE+NG +R K + EV L+ + T+
Sbjct: 67 LHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTL 100
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase,
transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB:
3iw4_A*
Length = 353
Score = 53.4 bits (129), Expect = 1e-07
Identities = 40/160 (25%), Positives = 62/160 (38%), Gaps = 44/160 (27%)
Query: 487 LLGQGFFGQVYRVTHRETGEV--M-VL-KELYRVDEE-----AEKNFLKESKQGLIYLID 537
+LG+G FG+V + T E+ + +L K++ D++ EK L
Sbjct: 27 VLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALP--------- 77
Query: 538 LGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPG 597
G + LH Q +L V EY+ GG L +Q G
Sbjct: 78 -GKPPFLTQLHSCFQT--------------------MDRLYFVMEYVNGGDLMYHIQQVG 116
Query: 598 Q-PLPWGQRVNF-ARDIAAGMTYLHSMNLIHRDLNSQNCL 635
+ P F A +IA G+ +L S +I+RDL N +
Sbjct: 117 RFKEP---HAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVM 153
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics
consortium, SGC, protein BIN; 1.30A {Homo sapiens}
Length = 93
Score = 48.9 bits (117), Expect = 1e-07
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
+H+GD + EVNG PV DK +E+ ++ + +
Sbjct: 47 IHVGDELREVNGIPVEDKRPEEIIQILAQSQGAI 80
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol,
transferase; 2.00A {Oryza sativa japonica group}
Length = 483
Score = 53.5 bits (128), Expect = 1e-07
Identities = 43/182 (23%), Positives = 74/182 (40%), Gaps = 34/182 (18%)
Query: 488 LGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLK-ESKQGLIYLIDLGSHGLINN 546
+G G FG++Y T+ +T E + +K + + + L ESK IY I G G I N
Sbjct: 15 IGSGSFGEIYLGTNIQTNEEVAIK---LENVKTKHPQLLYESK---IYRILQGGTG-IPN 67
Query: 547 LHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLPWGQRV 606
+ F +NV LV + + G +L++L + L +
Sbjct: 68 VRWFGVE------GDYNV--------------LVMDLL-GPSLEDLFNFCSRKLSLKTVL 106
Query: 607 NFARDIAAGMTYLHSMNLIHRDLNSQNCLVREVGSGFDFHLGQIYLIYVPYTLFILSAKT 666
A + + ++HS + +HRD+ N L +G G + Q+Y+I T
Sbjct: 107 MLADQMINRVEFVHSKSFLHRDIKPDNFL---MGLGRRAN--QVYIIDFGLAKKYRDTST 161
Query: 667 KK 668
+
Sbjct: 162 HQ 163
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A
{Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A*
2csn_A*
Length = 298
Score = 52.4 bits (126), Expect = 2e-07
Identities = 36/167 (21%), Positives = 69/167 (41%), Gaps = 32/167 (19%)
Query: 488 LGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLK-ESKQGLIYLIDLGSHGLINN 546
+G+G FG ++ T+ + + +K ++ L+ E + Y + G G I N
Sbjct: 18 IGEGSFGVIFEGTNLLNNQQVAIK---FEPRRSDAPQLRDEYR---TYKLLAGCTG-IPN 70
Query: 547 LHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLPWGQRV 606
++ F Q HNV LV + + G +L++LL G+
Sbjct: 71 VYYFGQE------GLHNV--------------LVIDLL-GPSLEDLLDLCGRKFSVKTVA 109
Query: 607 NFARDIAAGMTYLHSMNLIHRDLNSQNCLVREVGSGFDFHLGQIYLI 653
A+ + A + +H +L++RD+ N L +G + IY++
Sbjct: 110 MAAKQMLARVQSIHEKSLVYRDIKPDNFL---IGRPNSKNANMIYVV 153
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.5 bits (128), Expect = 2e-07
Identities = 76/447 (17%), Positives = 142/447 (31%), Gaps = 126/447 (28%)
Query: 105 GDGESYALVERSILYCGLCYKRQMQPLGRAKDAAFPMMRKPHCIRLVEIQPSA--HCSQG 162
G+ + Y E LY Y + L K +A L+ A +QG
Sbjct: 164 GNTDDY-FEELRDLYQ--TYHVLVGDL--IKFSA------ETLSELIRTTLDAEKVFTQG 212
Query: 163 IKLA--LDTSQPAPPVFSNLC---ISEWKLREETRTCVFYVRL--YLVLSVIVSATEPYL 215
+ + L+ P L IS L + ++L Y+V + ++ T P
Sbjct: 213 LNILEWLENPSNTPDK-DYLLSIPIS-CPL-------IGVIQLAHYVVTAKLLGFT-PGE 262
Query: 216 SRIKFASSGNRGLSGSCKGLM--AEIALGNNHALLWLW-SLLMSLV-CLTISLVQVTYRY 271
R +G +G +GL+ IA ++ W S +S+ +T+ L + R
Sbjct: 263 LRSYL-----KGATGHSQGLVTAVAIAETDS------WESFFVSVRKAITV-LFFIGVR- 309
Query: 272 CTGMTNNPSVPRLDPRADLMSLHLGDRILEVNGTP-----VRDKPLQEVECLIRNTTDTV 326
C + P ++ D + G P + + ++V+ + T +
Sbjct: 310 CYE-----AYPNTSLPPSILE----DSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL 360
Query: 327 -LQRQI---LK---ECRI-----KDLI-IEVCLERFSCSVEVKQM--------------- 358
+Q+ L + + + L + + L + + Q
Sbjct: 361 PAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF 420
Query: 359 LCVVSPFCWLFLAP-LRLGEGNMRRQEAVEWRVKPLSLKTLTVIGTVMINLGQNIQVVLG 417
L V SPF L P L ++ + V + K + + V T G +++V
Sbjct: 421 LPVASPFHSHLLVPASDLINKDLVKNN-VSFNAKDIQI---PVYDT---FDGSDLRV--- 470
Query: 418 TTIGCYRGLIKGPVAARVLSSRNRRDAWYNSPPKSLR----------P--ACDLSRTRSR 465
G I + ++ + W + + P A L R
Sbjct: 471 -----LSGSISERIVDCIIRLPVK---W----ETTTQFKATHILDFGPGGASGLGVLTHR 518
Query: 466 SFRVEASKSRIFRASDLVRGPLLGQGF 492
+ + + R+ A L P GF
Sbjct: 519 N--KDGTGVRVIVAGTLDINPDDDYGF 543
Score = 46.6 bits (110), Expect = 3e-05
Identities = 39/211 (18%), Positives = 64/211 (30%), Gaps = 67/211 (31%)
Query: 509 VLKELYRVDEEAEKNFLKESKQGL----------IYLIDLGSHGLINNLHCFSQVAVLRS 558
++K A++ F K+S L + I G G N F + LR
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI-FGGQG--NTDDYFEE---LRD 175
Query: 559 LHHHNVIRFIGVLYKDRKLNLVTEYI--AGGTLKELLQDP-------GQPLP---WGQRV 606
L+ Y LV + I + TL EL++ Q L W +
Sbjct: 176 LYQT---------YHV----LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP 222
Query: 607 NFARDIAAGMTYLH----SMNLI------H-----RDLNSQNCLVREVGSGFDFHLGQIY 651
+ D YL S LI H + L +R G H +
Sbjct: 223 SNTPDKD----YLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV 278
Query: 652 LIYVPYTLFILSAKTKKTYYPNILK--KASF 680
+ I + ++++ ++ K F
Sbjct: 279 T-----AVAIAETDSWESFFVSVRKAITVLF 304
Score = 44.3 bits (104), Expect = 1e-04
Identities = 83/560 (14%), Positives = 166/560 (29%), Gaps = 188/560 (33%)
Query: 156 SAHCSQGIKLA---LDTSQPAPPVFSNLCISEWKLREETRTCVFYVRLYLVLSVIVSATE 212
A+ ++ + L+ L+ P + +L+E+ F L + E
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVP---TASFFIASQLQEQ-----FNKILPEPTEGFAADDE 53
Query: 213 P-----YLSR-IKFASSGNRGLSGSCKGLMAEIA-----------LGNN--HALLWLWSL 253
P + + + + S + S G ++ L N HAL +
Sbjct: 54 PTTPAELVGKFLGYVS---SLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALA---AK 107
Query: 254 LMSLVCLTISLVQV---TYRYCTGMTNNPSVPRLDPRADLMSLHLGD-RILEV---NGTP 306
L+ T+ + Y + + A ++ G+ +++ + G
Sbjct: 108 LLQENDTTLVKTKELIKNY-ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNT 166
Query: 307 VRDKPLQEVECLIRNTTDTVLQRQILKECRIKDLIIEV--CLERFSCSVEVKQMLC--VV 362
D +E +R+ T + DLI L + + + +
Sbjct: 167 --DDYFEE----LRDLYQTY-------HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL 213
Query: 363 SPFCWL----------FLAPLRLGEGNMRRQEAVEWRVKPLS--------LKTLTVIGTV 404
+ WL +L + PL + T ++G
Sbjct: 214 NILEWLENPSNTPDKDYLL-----------SIPISC---PLIGVIQLAHYVVTAKLLGFT 259
Query: 405 MINLGQNIQVVLGTTIGCYRGLIKGPVAARVLSSRNRRDAWYNSPPKSLRPA----CDLS 460
L ++ G T G +GL V A ++ + ++++ S K++
Sbjct: 260 PGELRSYLK---GAT-GHSQGL----VTAVAIAETDSWESFFVSVRKAITVLFFIGV--- 308
Query: 461 RTRS-RSFRVEASKSRIFRAS-DLVRG---PLLGQGFFGQVYRVTHRETGEVMVLKELYR 515
R ++ + I S + G P+L + +T + V + +
Sbjct: 309 --RCYEAYPNTSLPPSILEDSLENNEGVPSPMLS------ISNLTQEQ-----VQDYVNK 355
Query: 516 VDEEAEKNFLKESKQGLIYLIDLGSHGLINNLHCFSQVAVL----RSLHHHNVIRFIGVL 571
+ L KQ + + L+N V+ +SL+
Sbjct: 356 TNSH-----LPAGKQ--VEI------SLVNGAKNL----VVSGPPQSLYG---------- 388
Query: 572 YKDRKLNLVTEYIAGGTLKELLQDPGQPLPWGQ-RVNFA-RDIAAGMTYL------HS-- 621
LNL TL++ G Q R+ F+ R + +L HS
Sbjct: 389 -----LNL--------TLRKAKAPSGL----DQSRIPFSERKLKFSNRFLPVASPFHSHL 431
Query: 622 ----MNLIHRDLNSQNCLVR 637
+LI++DL N
Sbjct: 432 LVPASDLINKDLVKNNVSFN 451
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation,
transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus}
PDB: 1tbn_A 1tbo_A 2e73_A
Length = 674
Score = 53.1 bits (127), Expect = 2e-07
Identities = 44/205 (21%), Positives = 71/205 (34%), Gaps = 44/205 (21%)
Query: 442 RDAWYNSPPKSLRPACDLSRTRSRSFRVEASKSRIFRASDLVRGPLLGQGFFGQVYRVTH 501
R + + A + + S + +D +LG+G FG+V
Sbjct: 303 RQKFERAKIGQGTKAPEEKTANTISKFDNNGNRDRMKLTDFNFLMVLGKGSFGKVMLSER 362
Query: 502 RETGEVM---VL-KELYRVDEE-----AEKNFLKESKQGLIYLIDLGSHGLINNLHCFSQ 552
+ T E+ +L K++ D++ EK L G + LH Q
Sbjct: 363 KGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALP----------GKPPFLTQLHSCFQ 412
Query: 553 VAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQ-PLPWGQRVNF-AR 610
+L V EY+ GG L +Q G+ P F A
Sbjct: 413 T--------------------MDRLYFVMEYVNGGDLMYHIQQVGRFKEP---HAVFYAA 449
Query: 611 DIAAGMTYLHSMNLIHRDLNSQNCL 635
+IA G+ +L S +I+RDL N +
Sbjct: 450 EIAIGLFFLQSKGIIYRDLKLDNVM 474
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken
structural genomics/proteomics initiative, RSGI, protein
binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 48.6 bits (116), Expect = 3e-07
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
LH GD IL ++GT + L E L+ + ++ V
Sbjct: 61 LHPGDHILSIDGTSMEHCSLLEATKLLASISEKV 94
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition,
allosteric inhibitor, kinase inhibitor hydrophobic
collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB:
3o96_A*
Length = 446
Score = 52.4 bits (126), Expect = 3e-07
Identities = 41/161 (25%), Positives = 59/161 (36%), Gaps = 46/161 (28%)
Query: 487 LLGQGFFGQVYRVTHRETGEV--M-VL-KELYRVDEE-----AEKNFLKESKQGLIYLID 537
LLG+G FG+V V + TG M +L KE+ +E E L+ S+
Sbjct: 155 LLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSR-------- 206
Query: 538 LGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPG 597
H + L Q +L V EY GG L L
Sbjct: 207 ---HPFLTALKYSFQT--------------------HDRLCFVMEYANGGELFFHLSRER 243
Query: 598 Q-PLPWGQRVNF-ARDIAAGMTYLHS-MNLIHRDLNSQNCL 635
R F +I + + YLHS N+++RDL +N +
Sbjct: 244 VFSED---RARFYGAEIVSALDYLHSEKNVVYRDLKLENLM 281
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 126
Score = 48.4 bits (115), Expect = 4e-07
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 288 ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
A L GDRI++VNG V K +V LI+N+ T+
Sbjct: 74 AFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTL 112
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3;
neuron-specific X11L2 protein, neuronal
MUNC18-1-interacting protein 3, MINT-3; NMR {Homo
sapiens}
Length = 101
Score = 47.8 bits (114), Expect = 4e-07
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
L +GDR+ +NGT + PL + +R T
Sbjct: 56 LSIGDRLTAINGTSLVGLPLAACQAAVRETKSQT 89
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP
kinase, PMK, STK26, stress-activated protein kinase,
structural genomics, PSI; 2.09A {Homo sapiens}
Length = 353
Score = 51.5 bits (124), Expect = 4e-07
Identities = 33/159 (20%), Positives = 57/159 (35%), Gaps = 37/159 (23%)
Query: 488 LGQGFFGQVYRVTHRETGEVMVLKELYRV--DEEAEKNFLKESKQGLIYLIDLGSHGLIN 545
+G G +G V + +GE + +K+L R E K +E
Sbjct: 32 VGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELL---------------- 75
Query: 546 NLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLN------LVTEYIAGGTLKELLQDPGQP 599
+L+ + H NVI + V L LV ++ L++++
Sbjct: 76 ---------LLKHMQHENVIGLLDVFTPASSLRNFYDFYLVMPFM-QTDLQKIMG---LK 122
Query: 600 LPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVRE 638
+ + G+ Y+HS ++HRDL N V E
Sbjct: 123 FSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNE 161
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor
clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Length = 88
Score = 47.3 bits (113), Expect = 4e-07
Identities = 10/34 (29%), Positives = 23/34 (67%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
LH+GD I E+NG V ++ +++++ ++R ++
Sbjct: 44 LHVGDEIREINGISVANQTVEQLQKMLREMRGSI 77
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling
protein; NMR {Homo sapiens}
Length = 83
Score = 46.8 bits (112), Expect = 6e-07
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 288 ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
AD + L GD+IL VN V+ ++V LI + +
Sbjct: 36 ADFVGLRAGDQILAVNEINVKKASHEDVVKLIGKCSGVL 74
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase;
HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Length = 367
Score = 51.2 bits (123), Expect = 6e-07
Identities = 38/159 (23%), Positives = 62/159 (38%), Gaps = 36/159 (22%)
Query: 488 LGQGFFGQVYRVTHRETGEVMVLKELYRV--DEEAEKNFLKESKQGLIYLIDLGSHGLIN 545
+G G +G V TG + +K+LYR E K +E +
Sbjct: 33 VGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELR---------------- 76
Query: 546 NLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLN------LVTEYIAGGTLKELLQDPGQP 599
+L+ + H NVI + V D L+ LV ++ G L +L++ +
Sbjct: 77 ---------LLKHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFM-GTDLGKLMK--HEK 124
Query: 600 LPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVRE 638
L + + G+ Y+H+ +IHRDL N V E
Sbjct: 125 LGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNE 163
>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of
P90 ribosomal S6 kinase 2, ATP- binding,
nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus
musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A*
Length = 325
Score = 50.6 bits (122), Expect = 7e-07
Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 39/158 (24%)
Query: 487 LLGQGFFGQVYRVTH---RETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGL 543
+LGQG FG+V+ V + ++ +K L +K LK +
Sbjct: 31 VLGQGSFGKVFLVKKISGSDARQLYAMKVL-------KKATLKVRDR------------- 70
Query: 544 INNLHCFSQVAVLRSLHHHNVIRFIGVLY----KDRKLNLVTEYIAGGTLKELLQDPGQ- 598
+ + +L ++H FI L+ + KL L+ +++ GG L L
Sbjct: 71 ---VRTKMERDILVEVNHP----FIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMF 123
Query: 599 PLPWGQRVNF-ARDIAAGMTYLHSMNLIHRDLNSQNCL 635
V F ++A + +LHS+ +I+RDL +N L
Sbjct: 124 TEE---DVKFYLAELALALDHLHSLGIIYRDLKPENIL 158
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP
kinase insertion, autophosphorylation, transferase; HET:
BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X*
2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A*
2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A*
3l8x_A* 3mvl_A* 3mvm_A* ...
Length = 367
Score = 50.8 bits (122), Expect = 7e-07
Identities = 39/159 (24%), Positives = 60/159 (37%), Gaps = 36/159 (22%)
Query: 488 LGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAE--KNFLKESKQGLIYLIDLGSHGLIN 545
+G G +G V +TG + +K+L R + K +E +
Sbjct: 37 VGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELR---------------- 80
Query: 546 NLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLN------LVTEYIAGGTLKELLQDPGQP 599
+L+ + H NVI + V R L LVT + G L +++ Q
Sbjct: 81 ---------LLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLM-GADLNNIVK--CQK 128
Query: 600 LPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVRE 638
L I G+ Y+HS ++IHRDL N V E
Sbjct: 129 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNE 167
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase
binding domain, signaling protein; HET: GNP; 2.10A {Mus
musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A
2lc7_A 1rzx_A
Length = 128
Score = 47.5 bits (113), Expect = 9e-07
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
L + D +LEVNG V K L +V ++ + +
Sbjct: 84 LAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNL 117
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm,
phosphoprotein, transport protein, CAsp; 2.60A {Homo
sapiens} PDB: 2eej_A
Length = 91
Score = 46.1 bits (110), Expect = 1e-06
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 288 ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
ADL L D I+EVNG V D+P ++V I+++ V
Sbjct: 40 ADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNV 78
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling
pathways, linear binding motif; HET: ANP; 1.33A {Homo
sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A*
2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X*
2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A*
1pmq_A* ...
Length = 371
Score = 50.1 bits (120), Expect = 1e-06
Identities = 37/192 (19%), Positives = 69/192 (35%), Gaps = 47/192 (24%)
Query: 460 SRTRSRSFRVEASKSRIF----RASDLVRGPLLGQGFFGQVYRVTHRETGEVMVLKELYR 515
S+ + + VE S F R +L +G G G V + +K+L R
Sbjct: 5 SKRDNNFYSVEIGDST-FTVLKRYQNLKP---IGSGAQGIVCAAYDAILERNVAIKKLSR 60
Query: 516 VDEEAEKNFLKESKQGLIYLIDLGSHGLINNLHC---FSQVAVLRSLHHHNVIRFIGVLY 572
+ N H + ++ +++ ++H N+I + V
Sbjct: 61 PFQ--------------------------NQTHAKRAYRELVLMKCVNHKNIIGLLNVFT 94
Query: 573 KDRKLN------LVTEYIAGGTLKELLQDPGQPLPWGQRVNFARDIAAGMTYLHSMNLIH 626
+ L +V E + L +++Q L + + G+ +LHS +IH
Sbjct: 95 PQKSLEEFQDVYIVMELM-DANLCQVIQ---MELDHERMSYLLYQMLCGIKHLHSAGIIH 150
Query: 627 RDLNSQNCLVRE 638
RDL N +V+
Sbjct: 151 RDLKPSNIVVKS 162
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A
{Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Length = 97
Score = 46.2 bits (110), Expect = 2e-06
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
+H+GDRIL +N + ++ KPL E L++ +TV
Sbjct: 49 IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETV 82
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase,
transferase, ATP- binding, phosphorylation,
nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB:
2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Length = 330
Score = 49.7 bits (119), Expect = 2e-06
Identities = 35/166 (21%), Positives = 63/166 (37%), Gaps = 30/166 (18%)
Query: 488 LGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLINNL 547
+G G FG++ + T E + +K L + A E + Y G I +
Sbjct: 17 IGCGNFGELRLGKNLYTNEYVAIK-LEPMKSRA-PQLHLEYR---FYKQLGSGDG-IPQV 70
Query: 548 HCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLPWGQRVN 607
+ F +N +V E + G +L++L + +
Sbjct: 71 YYFGPC------GKYNA--------------MVLELL-GPSLEDLFDLCDRTFSLKTVLM 109
Query: 608 FARDIAAGMTYLHSMNLIHRDLNSQNCLVREVGSGFDFHLGQIYLI 653
A + + M Y+HS NLI+RD+ +N L +G + I++I
Sbjct: 110 IAIQLISRMEYVHSKNLIYRDVKPENFL---IGRPGNKTQQVIHII 152
>2eaq_A LIM domain only protein 7; conserved hypothetical protein,
structural genomics, NPPSFA; 1.46A {Homo sapiens}
Length = 90
Score = 45.9 bits (109), Expect = 2e-06
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 288 ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
A+ L + D I+ +N T +E E + +T
Sbjct: 41 AEFSQLQVDDEIIAINNTKFSYNDSKEWEEAMAKAQETG 79
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive,
active, ribosomal S6 kinase, activation, alternative
initiation, ATP-binding; HET: TPO STU; 2.35A {Homo
sapiens} PDB: 3a61_A* 3a60_A*
Length = 327
Score = 49.5 bits (119), Expect = 2e-06
Identities = 42/165 (25%), Positives = 69/165 (41%), Gaps = 51/165 (30%)
Query: 487 LLGQGFFGQVYRVTH---RETGEV--M-VLKE---LYRVDE----EAEKNFLKESKQGLI 533
+LG+G +G+V++V TG++ M VLK+ + + +AE+N L+E K
Sbjct: 24 VLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVK---- 79
Query: 534 YLIDLGSHGLINNLH-CFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKEL 592
H I +L F Q KL L+ EY++GG L
Sbjct: 80 -------HPFIVDLIYAF-QT--------------------GGKLYLILEYLSGGELFMQ 111
Query: 593 LQDPGQ-PLPWGQRVNF-ARDIAAGMTYLHSMNLIHRDLNSQNCL 635
L+ G F +I+ + +LH +I+RDL +N +
Sbjct: 112 LEREGIFMED---TACFYLAEISMALGHLHQKGIIYRDLKPENIM 153
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel
3 chimera; PDZ domain, PDZ binding, GIRK3 regulation,
early endosomes; 1.68A {Rattus norvegicus} PDB: 3qdo_A
3qgl_A
Length = 107
Score = 45.8 bits (109), Expect = 2e-06
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 288 ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
AD + GDRILEVNG V ++V LIR +
Sbjct: 56 ADRAGVRKGDRILEVNGVNVEGATHKQVVDLIRAGEKEL 94
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 45.4 bits (108), Expect = 2e-06
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 288 ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
DL L DR+L+VN RD V LI + + +
Sbjct: 45 GDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKL 83
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain,
intracellular signaling cascade, signal transduction;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 111
Score = 45.9 bits (109), Expect = 2e-06
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 281 VPRLDPR--ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTVLQRQIL 332
V LDP A L GD I+ + G + + EV L+++ ++ +++
Sbjct: 40 VHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVV 93
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain,
arhgef11, KIAA0380, structural genomics, NPPSFA; NMR
{Homo sapiens} PDB: 2omj_A 2os6_A
Length = 93
Score = 45.4 bits (108), Expect = 2e-06
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 288 ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTVL 327
A + GDRI++VNGT V + EV LI++ L
Sbjct: 42 AMKAGVKEGDRIIKVNGTMVTNSSHLEVVKLIKSGAYVAL 81
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3,
human, structural genomics, structural GE consortium,
SGC, signaling protein; 2.39A {Homo sapiens} SCOP:
b.36.1.1
Length = 91
Score = 45.0 bits (107), Expect = 3e-06
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 281 VPRLDPR--ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTVL 327
V +D A+ L D +L++N PV E+ IR+ ++
Sbjct: 28 VQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEII 76
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo
sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Length = 91
Score = 45.0 bits (107), Expect = 3e-06
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 288 ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
A+ L GDR++EVNG V + Q+V IR + V
Sbjct: 40 AEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAV 78
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria,
structural GE structural genomics consortium, SGC,
transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Length = 360
Score = 48.9 bits (117), Expect = 3e-06
Identities = 28/158 (17%), Positives = 60/158 (37%), Gaps = 33/158 (20%)
Query: 487 LLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLINN 546
+G G FG+V H + + +K + +N K ++ I
Sbjct: 42 KMGDGTFGRVLLCQHIDNKKYYAVKVV--------RNIKKYTRSAKI------------- 80
Query: 547 LHCFSQVAVLRSL-----HHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPG-QPL 600
+ +L+ + +++N++++ G + L+ E G +L E++
Sbjct: 81 -----EADILKKIQNDDINNNNIVKYHGKFMYYDHMCLIFE-PLGPSLYEIITRNNYNGF 134
Query: 601 PWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVRE 638
+ +I + YL M+L H DL +N L+ +
Sbjct: 135 HIEDIKLYCIEILKALNYLRKMSLTHTDLKPENILLDD 172
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase;
structural genomics consortium, SGC, transferase; 2.37A
{Cryptosporidium parvum iowa II}
Length = 388
Score = 48.9 bits (117), Expect = 3e-06
Identities = 37/156 (23%), Positives = 66/156 (42%), Gaps = 37/156 (23%)
Query: 488 LGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLINNL 547
LG+G +G V++ R TGEV+ +K+++ + N+
Sbjct: 17 LGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQ--------------------------NST 50
Query: 548 HC---FSQVAVLRSLHHH-NVIRFIGVLY--KDRKLNLVTEYIAGGT-LKELLQDPGQPL 600
F ++ +L L H N++ + VL DR + LV +Y+ T L +++ L
Sbjct: 51 DAQRTFREIMILTELSGHENIVNLLNVLRADNDRDVYLVFDYM--ETDLHAVIR--ANIL 106
Query: 601 PWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLV 636
+ + + YLHS L+HRD+ N L+
Sbjct: 107 EPVHKQYVVYQLIKVIKYLHSGGLLHRDMKPSNILL 142
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 100
Score = 45.1 bits (107), Expect = 3e-06
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 281 VPRLDPR--ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
V +D A+ L D +L++N PV E+ IR+ +
Sbjct: 40 VQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEI 87
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction,
membrane, phosphorylati domain, protein binding; 1.70A
{Homo sapiens} PDB: 2jwe_A 2osg_A
Length = 81
Score = 44.6 bits (106), Expect = 3e-06
Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 292 SLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV---LQRQ 330
++ GD +L++NGT + L + + LI + + +QR
Sbjct: 39 NIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRD 80
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein
complex, PDZ domain, peptide binding protein; 2.60A
{Drosophila melanogaster}
Length = 206
Score = 47.6 bits (113), Expect = 3e-06
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
L GD I + NG + P Q L + V
Sbjct: 155 LQRGDIITKFNGDALEGLPFQVCYALFKGANGKV 188
Score = 39.9 bits (93), Expect = 0.001
Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 293 LHLGDRILEVNGTPVRDKPLQ--EVECLIRNTTDTVLQRQILKECRIKDLIIEVCLERFS 350
L + D I ++NGTP+ + +V L T + + + + + V L + +
Sbjct: 64 LKIFDHICDINGTPIHVGSMTTLKVHQLFHTTYEKAVTLTVFRADPPELEKFNVDLMKKA 123
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain,
scaffolding protein signaling protein; 1.56A {Homo
sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A
1obz_A 1w9o_A 1w9q_A 1ybo_A
Length = 166
Score = 46.7 bits (111), Expect = 4e-06
Identities = 16/130 (12%), Positives = 37/130 (28%), Gaps = 16/130 (12%)
Query: 285 DPRADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTVLQ---RQILKECRIKDLI 341
+ A L+ L GD++L++NG + +++ + R E I
Sbjct: 37 NSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRDRPFERTITMHK 96
Query: 342 IEVCLERFSCSVEVKQMLCVVSPFCWLFLAPLRLGE----------GNMRRQEAVEWRVK 391
F + S L ++ + +
Sbjct: 97 DSTGHVGFIFKNGKITSIVKDSSAA---RNGLLTEHNICEINGQNVIGLKDSQIADILST 153
Query: 392 PLSLKTLTVI 401
++ T+T++
Sbjct: 154 SGTVVTITIM 163
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter
usage, alternative splicing, cell junction, cell
membrane, disease mutation; 1.75A {Homo sapiens}
Length = 88
Score = 44.6 bits (106), Expect = 4e-06
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 292 SLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
+LH GD IL++NGT + L + LI + +
Sbjct: 39 NLHEGDIILKINGTVTENMSLTDARKLIEKSRGKL 73
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding
protein, membrane, sensory transduction, vision; 1.55A
{Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Length = 96
Score = 44.2 bits (105), Expect = 5e-06
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
L GD I + NG + P Q L + V
Sbjct: 50 LQRGDIITKFNGDALEGLPFQVSYALFKGANGKV 83
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction,
membrane, phosphoprot domain, tight junction,
transmembrane; 2.40A {Homo sapiens}
Length = 92
Score = 44.3 bits (105), Expect = 5e-06
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 292 SLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
++ GD +L++NGT + L + + LI + +
Sbjct: 41 NIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKL 75
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase,
splicing, human, 10Z-hymendialdisine, structural
genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Length = 339
Score = 48.0 bits (115), Expect = 6e-06
Identities = 34/157 (21%), Positives = 56/157 (35%), Gaps = 29/157 (18%)
Query: 487 LLGQGFFGQVYRVTHRETGEVMV-LKELYRVDEEAEKNFLKESKQGLI---YLIDLGSHG 542
LG+G FG+V + G V +K + KN + + L L +
Sbjct: 21 TLGEGAFGKVVECIDHKAGGRHVAVKIV--------KNVDRYCEAARSEIQVLEHLNTTD 72
Query: 543 LINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPG-QPLP 601
+ C V +L HH + +V E + G + + +++ G P
Sbjct: 73 PNSTFRC---VQMLEWFEHHG------------HICIVFE-LLGLSTYDFIKENGFLPFR 116
Query: 602 WGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVRE 638
A I + +LHS L H DL +N L +
Sbjct: 117 LDHIRKMAYQICKSVNFLHSNKLTHTDLKPENILFVQ 153
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in
transferase-transferase inhibitor complex; HET: JBI;
2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Length = 464
Score = 48.3 bits (115), Expect = 6e-06
Identities = 31/160 (19%), Positives = 57/160 (35%), Gaps = 39/160 (24%)
Query: 488 LGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLINNL 547
+G G G V + +K+L R + N
Sbjct: 70 IGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQ--------------------------NQT 103
Query: 548 HC---FSQVAVLRSLHHHNVIRFIGVLYKDRKLN------LVTEYIAGGTLKELLQDPGQ 598
H + ++ +++ ++H N+I + V + L LV E L +++Q
Sbjct: 104 HAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMEL-MDANLCQVIQ---M 159
Query: 599 PLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVRE 638
L + + G+ +LHS +IHRDL N +V+
Sbjct: 160 ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKS 199
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase,
phosphorylation, serine/threonine protein kinase; 1.8A
{Homo sapiens} SCOP: d.144.1.7
Length = 355
Score = 48.1 bits (115), Expect = 6e-06
Identities = 36/164 (21%), Positives = 63/164 (38%), Gaps = 48/164 (29%)
Query: 487 LLGQGFFGQVYRVTH---RETGEV--M-VLK--ELYRVDEE-----AEKNFLKESKQGLI 533
+LG G +G+V+ V +TG++ M VLK + + + E+ L+ +Q
Sbjct: 61 VLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQ--- 117
Query: 534 YLIDLGSHGLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELL 593
+ LH Q + KL+L+ +YI GG L L
Sbjct: 118 -------SPFLVTLHYAFQT--------------------ETKLHLILDYINGGELFTHL 150
Query: 594 QDPGQ-PLPWGQRVNF-ARDIAAGMTYLHSMNLIHRDLNSQNCL 635
+ V +I + +LH + +I+RD+ +N L
Sbjct: 151 SQRERFTEH---EVQIYVGEIVLALEHLHKLGIIYRDIKLENIL 191
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.7 bits (115), Expect = 7e-06
Identities = 62/441 (14%), Positives = 129/441 (29%), Gaps = 117/441 (26%)
Query: 284 LDPRADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTVLQRQILKECRIKDLIIE 343
+D D IL V D + +C ++ D + + IL + I +I+
Sbjct: 7 MDFETGEHQYQYKD-ILSVF----EDAFVDNFDC--KDVQD--MPKSILSKEEIDHIIMS 57
Query: 344 -----------VCLERFSCSVEVKQML-CVVSP-FCWLFLAPLR--LGEGNMRRQEAVEW 388
L + V++ + V+ + +L ++P++ + +M + +E
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEM-VQKFVEEVLRINYKFL-MSPIKTEQRQPSMMTRMYIEQ 115
Query: 389 R------VKPLS------LKTLTVIGTVMINLGQNIQVVLGTTIGCYRGLIKGPVAARVL 436
R + + L+ + ++ L V++ +G G K VA V
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS--G--KTWVALDVC 171
Query: 437 SSRNRRDA------W-----YNSPPKSLRPACDL---------------SRTRSRSFRVE 470
S + W NSP L L S + R ++
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 471 ASKSRIFRASDLVRGPLL----------GQGF-FG-QVYRVTHRETGEVMVLKELYRVD- 517
A R+ ++ LL F ++ +T R L
Sbjct: 232 AELRRLLKSKPYENC-LLVLLNVQNAKAWNAFNLSCKIL-LTTRFKQVTDFLSAATTTHI 289
Query: 518 --EEAEKNFLK-ESKQGLIYLIDLGSHGL------INNLHCFSQVAVLRSLHHHNVIRFI 568
+ E K L+ +D L N S +A S+ + +
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL-SIIA--ESIRDG-LATWD 345
Query: 569 GVLY--KDRKLNLVT---EYIAGGTLKELLQD-----PGQPLP-------WGQRV-NFAR 610
+ D+ ++ + +++ P +P W + +
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 611 DIAAGMTYLHSMNLIHRDLNS 631
+ + LH +L+ +
Sbjct: 406 VV---VNKLHKYSLVEKQPKE 423
Score = 44.1 bits (103), Expect = 2e-04
Identities = 81/567 (14%), Positives = 165/567 (29%), Gaps = 169/567 (29%)
Query: 148 IRLVEIQPSAHCSQGIKLALDTSQPAPPVFSNLCISEWKLREETRTCVFYVR--LYLVLS 205
I+ + QPS I+ D VF+ +S + + R + +R +++
Sbjct: 98 IKTEQRQPSMMTRMYIE-QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI- 155
Query: 206 VIVSATEPYLSRIKFASSGNRGLSGSCKGLMAEIALGNNHALL--------WL------- 250
G+ GS K +A ++ + WL
Sbjct: 156 --------------------DGVLGSGKTWVALDVC-LSYKVQCKMDFKIFWLNLKNCNS 194
Query: 251 -WSLLMSLVCLTISLVQVTYRYCTGMTNNPSVPRL-----DPRADLMSLHLGDRILEV-- 302
++L L L L Q+ + + ++ ++ L+ + L V
Sbjct: 195 PETVLEMLQKL---LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251
Query: 303 NGTPVRDKPLQE---VEC--LI--RNT--TDTV------------------------LQR 329
N V++ + C L+ R TD + L
Sbjct: 252 N---VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 330 QILKECRIKDLIIEVCLERFSCSVEVKQMLCVVSPF-CWLFLAPLRLGEGNMRRQEAVEW 388
+ L +CR +DL EV +P + +R +G W
Sbjct: 309 KYL-DCRPQDLPREVLT---------------TNPRRLSIIAESIR--DGLATWD---NW 347
Query: 389 RVKPLSLKTLTVIGTVMINLGQNIQVVLGTTIGCYRGL-I--KG-PVAARVLSSRNRRDA 444
+ K T+I + + L + L + + +LS
Sbjct: 348 K-HVNCDKLTTIIESSLNVLEPAEYR------KMFDRLSVFPPSAHIPTILLSL-----I 395
Query: 445 WYNSPPKSLRPACDLSRTRSRSFRVEASKSRIFRASDL---VRGPLLGQGFFGQVYRVTH 501
W++ +++ S + K + ++ L + H
Sbjct: 396 WFDVIKSD--VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE-------YALH 446
Query: 502 RETGEVMVLKELYRVDEEAEKN-FLKESKQGLIYLIDLGSHGLINNLHCFSQVAVLRSLH 560
R + + Y + + + + + Y +G H L N H ++ + R +
Sbjct: 447 RS------IVDHYNIPKTFDSDDLIPPYLDQYFYSH-IGHH-LKNIEH-PERMTLFRMVF 497
Query: 561 HHNVIRFIGVLYKDRKLNLV-TEYIAGGTLKELLQD---------PGQPLPWGQRVN--- 607
RF+ ++K+ T + A G++ LQ P + VN
Sbjct: 498 LD--FRFL-----EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY-ERLVNAIL 549
Query: 608 -FARDIAAGMTYLHSMNLIHRDLNSQN 633
F I + +L+ L +++
Sbjct: 550 DFLPKIEENLICSKYTDLLRIALMAED 576
Score = 32.9 bits (74), Expect = 0.39
Identities = 31/220 (14%), Positives = 66/220 (30%), Gaps = 45/220 (20%)
Query: 480 SDLVRGPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFL-------------- 525
D+ + +L + + +G + + L EE + F+
Sbjct: 39 QDMPK-SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP 97
Query: 526 --KESKQ-GLIYLIDLGSHG-LINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVT 581
E +Q ++ + + L N+ F++ V R L + +R L + R V
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR-LQPYLKLR--QALLELRPAKNVL 154
Query: 582 EYIAGGTLK-----ELLQDPG--QPLP----WGQRVNFARDIAAGMTYLHSMNLIHRDLN 630
G+ K ++ + W +N + L+++ ++
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW---LNLKNCNSPETVLEMLQKLLYQ-ID 210
Query: 631 SQNCLVREVGSGFDFHLGQI------YLIYVPY--TLFIL 662
+ S + I L PY L +L
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90,
GLUR6, cell juncti membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 2.05A {Rattus norvegicus}
PDB: 3zrt_A 2ka9_A
Length = 196
Score = 46.3 bits (110), Expect = 7e-06
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 292 SLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
L +GD+IL VN + D ++ ++NT D V
Sbjct: 148 RLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVV 182
Score = 43.6 bits (103), Expect = 6e-05
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
L + D IL VN VR+ ++ V
Sbjct: 54 LRVNDSILFVNEVDVREVTHSAAVEALKEAGSIV 87
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding,
RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A
{Homo sapiens}
Length = 109
Score = 44.4 bits (105), Expect = 7e-06
Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 281 VPRLDPR--ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTVLQRQIL 332
V LDP A + GD I+ + + L EV L+++ + ++ +++
Sbjct: 48 VHFLDPYCSASVAGAREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKVV 101
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor,
PF670462, transferase-transferase I complex; HET: 0CK;
1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Length = 296
Score = 47.4 bits (113), Expect = 7e-06
Identities = 41/168 (24%), Positives = 65/168 (38%), Gaps = 36/168 (21%)
Query: 488 LGQGFFGQVYRVTHRETGE-VMVLKELYRVDEEAEKNFLK-ESKQGLIYLIDLGSHGLIN 545
+G G FG +Y T GE V + E + + L ESK IY + G G I
Sbjct: 17 IGSGSFGDIYLGTDIAAGEEVAIKLE----CVKTKHPQLHIESK---IYKMMQGGVG-IP 68
Query: 546 NLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLPWGQR 605
+ +NV +V E + G +L++L +
Sbjct: 69 TIRWCGAE------GDYNV--------------MVMELL-GPSLEDLFNFCSRKFSLKTV 107
Query: 606 VNFARDIAAGMTYLHSMNLIHRDLNSQNCLVREVGSGFDFHLGQIYLI 653
+ A + + + Y+HS N IHRD+ N L +G G + +Y+I
Sbjct: 108 LLLADQMISRIEYIHSKNFIHRDVKPDNFL---MGLGKKGN--LVYII 150
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 117
Score = 44.8 bits (106), Expect = 7e-06
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 288 ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
A L GD++LE NG +R Q+ +I DT+
Sbjct: 55 AHQAGLEYGDQLLEFNGINLRSATEQQARLIIGQQCDTI 93
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A
{Homo sapiens}
Length = 96
Score = 43.9 bits (104), Expect = 8e-06
Identities = 10/39 (25%), Positives = 15/39 (38%)
Query: 288 ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
A + GDR++ V G V +E I+ V
Sbjct: 43 AKKAGMQAGDRLVAVAGESVEGLGHEETVSRIQGQGSCV 81
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ
domain, cytoskeleton, actin binding, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 43.9 bits (104), Expect = 8e-06
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 281 VPRLDPR--ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
+ R+ P A +L GD IL ++G + + I+ + +
Sbjct: 33 ITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQL 80
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide
binding protein; NMR {Drosophila melanogaster}
Length = 106
Score = 44.3 bits (105), Expect = 9e-06
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
L GD I + NG + P Q L + V
Sbjct: 44 LQRGDIITKFNGDALEGLPFQVCYALFKGANGKV 77
>3qyz_A Mitogen-activated protein kinase 1; transferase,
serine/threonine-protein kinase, ATP-binding CE
phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus
norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A*
4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A
3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A*
2oji_A* ...
Length = 364
Score = 47.3 bits (113), Expect = 9e-06
Identities = 29/156 (18%), Positives = 52/156 (33%), Gaps = 32/156 (20%)
Query: 488 LGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLINNL 547
+G+G +G V + +K++ F
Sbjct: 35 IGEGAYGMVCSAYDNLNKVRVAIKKI--------SPFEH----------------QTYCQ 70
Query: 548 HCFSQVAVLRSLHHHNVIRFIGVLYKDRKLN-----LVTEYIAGGTLKELLQDPGQPLPW 602
++ +L H N+I ++ +V + + L +LL+ Q L
Sbjct: 71 RTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDLM-ETDLYKLLK--TQHLSN 127
Query: 603 GQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVRE 638
F I G+ Y+HS N++HRDL N L+
Sbjct: 128 DHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNT 163
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 44.0 bits (104), Expect = 1e-05
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
L G ++LE NG P+ K +EV+ +I +
Sbjct: 68 LMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEA 101
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated
protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 96
Score = 43.5 bits (103), Expect = 1e-05
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
L GD+IL++N P D + ++R D++
Sbjct: 48 LFPGDQILQMNNEPAEDLSWERAVDILREAEDSL 81
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3;
transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae}
PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Length = 353
Score = 46.9 bits (112), Expect = 1e-05
Identities = 36/155 (23%), Positives = 60/155 (38%), Gaps = 34/155 (21%)
Query: 488 LGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLINNL 547
LG+G +G V TH+ TGE++ +K++ + F K + L
Sbjct: 19 LGEGAYGVVCSATHKPTGEIVAIKKI--------EPFDK----------------PLFAL 54
Query: 548 HCFSQVAVLRSLHHHNVIRFIGVLYKDRKLN-----LVTEYIAGGT-LKELLQDPGQPLP 601
++ +L+ H N+I + D N ++ E + T L ++ Q L
Sbjct: 55 RTLREIKILKHFKHENIITIFNIQRPDSFENFNEVYIIQELM--QTDLHRVIS--TQMLS 110
Query: 602 WGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLV 636
F + LH N+IHRDL N L+
Sbjct: 111 DDHIQYFIYQTLRAVKVLHGSNVIHRDLKPSNLLI 145
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 106
Score = 43.5 bits (103), Expect = 1e-05
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 288 ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
A + D ++EVNG V D +EV ++ + V
Sbjct: 45 AMRAGVLADDHLIEVNGENVEDASHEEVVEKVKKSGSRV 83
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein;
PDZ domain, cytoplasm, membrane, polymorphism, protein
binding; 2.70A {Homo sapiens}
Length = 104
Score = 43.6 bits (103), Expect = 1e-05
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 288 ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
A L GD + +NG ++V LIR++ + +
Sbjct: 61 AHCAGLQAGDVLANINGVSTEGFTYKQVVDLIRSSGNLL 99
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 94
Score = 43.1 bits (102), Expect = 1e-05
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 281 VPRLDPR--ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
V ++ R A+ L GD I+ +NG + E + IR + +
Sbjct: 34 VTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSASPL 81
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ
domain, PDZ2, acetylation, cell projection, membrane,
polymorphism; NMR {Homo sapiens}
Length = 98
Score = 43.1 bits (102), Expect = 1e-05
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 288 ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
A+ L DRI+EVNG + K +V IR D
Sbjct: 46 AEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDET 84
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 43.0 bits (102), Expect = 1e-05
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 281 VPRLDPR--ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
+ R+ A L +L GD I +NG E + I+ D +
Sbjct: 36 ISRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKGCHDHL 83
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 101
Score = 43.5 bits (103), Expect = 1e-05
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 288 ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTVL 327
A+ L +GD+IL VN + E ++ + VL
Sbjct: 48 AEKEGLRVGDQILRVNDKSLARVTHAEAVKALKGSKKLVL 87
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK
Ser/Thr protein kinase fold, Ser/Thr protein kinase,
TRA; 1.95A {Leishmania major}
Length = 362
Score = 46.9 bits (112), Expect = 1e-05
Identities = 26/156 (16%), Positives = 52/156 (33%), Gaps = 21/156 (13%)
Query: 488 LGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLINNL 547
+ G +G V G + +K ++ + +
Sbjct: 30 ISSGSYGAVCAGVDS-EGIPVAIKRVFNTVSDGRTVNILSD--------------SFLCK 74
Query: 548 HCFSQVAVLRSLHHHNVIRFIGVLYKDRKLN-----LVTEYIAGGTLKELLQDPGQPLPW 602
++ +L HH N++ + + LVTE + L +++ D +
Sbjct: 75 RVLREIRLLNHFHHPNILGLRDIFVHFEEPAMHKLYLVTELM-RTDLAQVIHDQRIVISP 133
Query: 603 GQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVRE 638
F I G+ LH ++HRDL+ N L+ +
Sbjct: 134 QHIQYFMYHILLGLHVLHEAGVVHRDLHPGNILLAD 169
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics,
structural genomics consort unknown function; HET: PG4;
1.50A {Homo sapiens} PDB: 2v1w_A*
Length = 91
Score = 43.1 bits (102), Expect = 1e-05
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 281 VPRLDPR--ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV---LQRQ 330
+ R+ P A L +L +GD I ++G + E + I+ TD + + R
Sbjct: 31 ISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEAQNRIKGCTDNLTLTVARS 85
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase;
1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A
3nr9_A*
Length = 355
Score = 46.6 bits (111), Expect = 1e-05
Identities = 33/157 (21%), Positives = 53/157 (33%), Gaps = 29/157 (18%)
Query: 487 LLGQGFFGQVYRVTHRETGEVMV-LKELYRVDEEAEKNFLKESKQGLI---YLIDLGSHG 542
LG+G FG+V G+ V LK + +N K + + L +
Sbjct: 26 NLGEGTFGKVVECLDHARGKSQVALKII--------RNVGKYREAARLEINVLKKIKEKD 77
Query: 543 LINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPG-QPLP 601
N C V + + H + + E + G E L++ QP P
Sbjct: 78 KENKFLC---VLMSDWFNFHG------------HMCIAFE-LLGKNTFEFLKENNFQPYP 121
Query: 602 WGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVRE 638
+ A + + +LH L H DL +N L
Sbjct: 122 LPHVRHMAYQLCHALRFLHENQLTHTDLKPENILFVN 158
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 43.1 bits (102), Expect = 2e-05
Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 281 VPRLDPR--ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
+ L A + +GD +L ++G + E + I+ T ++
Sbjct: 33 ISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSL 80
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper
chaperone for superoxide dismutase, neuronal adaptor,
protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 90
Score = 42.8 bits (101), Expect = 2e-05
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 288 ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
A+ + +G RI+E+NG V P +++ ++ N +
Sbjct: 44 AERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEI 82
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A 2kqf_A 2kyl_A 3ps4_A
Length = 99
Score = 43.2 bits (102), Expect = 2e-05
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 288 ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
A L GD I +NG V +V L+ + + +
Sbjct: 47 AQEAGLRAGDLITHINGESVLGLVHMDVVELLLKSGNKI 85
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular
signal regulated kinase 3, serine phosphorylation,
threonine phosphorylation; 2.25A {Homo sapiens}
Length = 320
Score = 46.1 bits (110), Expect = 2e-05
Identities = 35/172 (20%), Positives = 67/172 (38%), Gaps = 51/172 (29%)
Query: 488 LGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLINNL 547
LG G G V+ + + + +K++ D ++ K+ L+E K
Sbjct: 19 LGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIK------------------ 60
Query: 548 HCFSQVAVLRSLHHHNVIRFIGVLYKDRKLN--------------LVTEYIAGGT-LKEL 592
++R L H N+++ +L +V EY+ T L +
Sbjct: 61 -------IIRRLDHDNIVKVFEILGPSGSQLTDDVGSLTELNSVYIVQEYM--ETDLANV 111
Query: 593 LQDPGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDL-------NSQNCLVR 637
L+ PL F + G+ Y+HS N++HRDL N+++ +++
Sbjct: 112 LE--QGPLLEEHARLFMYQLLRGLKYIHSANVLHRDLKPANLFINTEDLVLK 161
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces
cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A*
1how_A 2jd5_A
Length = 373
Score = 46.2 bits (110), Expect = 2e-05
Identities = 28/159 (17%), Positives = 55/159 (34%), Gaps = 24/159 (15%)
Query: 487 LLGQGFFGQVYRVTHRETGEVMVLK-----ELYRVDEEAEKNFLKESKQGLIYLIDLGSH 541
LG G F V+ + +K ++Y E E L+ + D
Sbjct: 26 KLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQ-----RVNDADNTKE 80
Query: 542 GLINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQD-PGQPL 600
+ H + +L +H + +V E + G L L++ + +
Sbjct: 81 DSMGANHI---LKLLDHFNHKGP--------NGVHVVMVFE-VLGENLLALIKKYEHRGI 128
Query: 601 PWGQRVNFARDIAAGMTYLHSM-NLIHRDLNSQNCLVRE 638
P ++ + G+ Y+H +IH D+ +N L+
Sbjct: 129 PLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEI 167
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 102
Score = 43.1 bits (102), Expect = 2e-05
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 288 ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
A+ L D ++ VNG V V +IR D
Sbjct: 43 AEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQT 81
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem
repeats, scaffold protein, protein binding; NMR {Rattus
norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Length = 196
Score = 45.1 bits (107), Expect = 2e-05
Identities = 7/35 (20%), Positives = 19/35 (54%)
Query: 292 SLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
+L LGD++L ++ + +++ +++ D V
Sbjct: 153 TLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLV 187
Score = 42.1 bits (99), Expect = 2e-04
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
L +GDR++ +NG P D +E L+R+++ T
Sbjct: 55 LQIGDRVMAINGIPTEDSTFEEANQLLRDSSITS 88
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 128
Score = 43.7 bits (103), Expect = 2e-05
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 288 ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTVL 327
A+ L +GD+ILEVNG + E L++++ +L
Sbjct: 59 AEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKSSRHLIL 98
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc,
LNX2_human, zinc-finger, polymorphism, ring finger
protein 1; 1.3A {Homo sapiens}
Length = 95
Score = 42.7 bits (101), Expect = 2e-05
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
L DR+L +NG ++ + +I+ + + V
Sbjct: 48 LSSNDRVLAINGHDLKYGTPELAAQIIQASGERV 81
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 93
Score = 42.6 bits (101), Expect = 2e-05
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
L GD++L VNG V + ++ L++ +V
Sbjct: 49 LKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSV 82
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ
tandem, alternative splicing, cell junction, cytoplasm;
2.30A {Rattus norvegicus}
Length = 200
Score = 44.7 bits (106), Expect = 2e-05
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
+ GDR+L V+G + E +++
Sbjct: 154 IKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEA 187
Score = 42.4 bits (100), Expect = 2e-04
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 7/63 (11%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV-------LQRQILKECRIKDLIIEVC 345
L +GD I VNG + E+ L++N + V L ++ + +EV
Sbjct: 52 LDVGDYIKAVNGINLAKFRHDEIISLLKNVGERVVLEVEYELPPVSIQGSSVMFRTVEVT 111
Query: 346 LER 348
L +
Sbjct: 112 LHK 114
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog,
phosphorylation, signaling PR LIM domain, PDZ domain;
1.5A {Homo sapiens}
Length = 88
Score = 42.3 bits (100), Expect = 2e-05
Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 281 VPRLDPR--ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV---LQRQ 330
+ L A ++ +GD +L ++G + E + I+ T ++ LQR+
Sbjct: 31 ISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLNMTLQRE 85
>2ego_A General receptor for phosphoinositides 1- associated scaffold
protein; PDZ domain, ligand-free, protein binding; 1.80A
{Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Length = 96
Score = 42.4 bits (100), Expect = 2e-05
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 288 ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
A L L GD I VNG V +E+ +I+ + + +
Sbjct: 50 AQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKASGNVL 88
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation,
structural genomics, structural genomics consortium,
SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Length = 90
Score = 42.3 bits (100), Expect = 3e-05
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 288 ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
A L DR++EVNG V EV I+ D
Sbjct: 41 AARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEA 79
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa,
Na/PI cotransporter C- terminal-associated protein,
NAPI-CAP1; NMR {Mus musculus}
Length = 114
Score = 42.8 bits (101), Expect = 3e-05
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 288 ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
A+ L GDR+L +NG V + +V L+R + ++V
Sbjct: 51 AEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSV 89
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large
homolog 2, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 91
Score = 42.4 bits (100), Expect = 3e-05
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
LH+GD I EVNG PV P + ++ L+RN + +V
Sbjct: 48 LHVGDIIKEVNGQPVGSDP-RALQELLRNASGSV 80
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural
genomics consortium, SGC; 1.11A {Homo sapiens}
Length = 89
Score = 42.3 bits (100), Expect = 3e-05
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 281 VPRLDPR--ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
+ RL P A + +GD +L ++G E + IR + +
Sbjct: 31 ISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEAQNKIRACGERL 78
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere,
structural protein; NMR {Homo sapiens} SCOP: b.36.1.1
PDB: 1wjl_A
Length = 85
Score = 41.9 bits (99), Expect = 3e-05
Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 281 VPRLDPR--ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
+ R+ P A L GD ++ ++G E + I++ + +
Sbjct: 29 ISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNL 76
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 114
Score = 42.8 bits (101), Expect = 3e-05
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
L +GDRIL VNG + + P ++ LI++ +V
Sbjct: 62 LKVGDRILAVNGQSIINMPHADIVKLIKDAGLSV 95
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; structural genomi consortium, SGC, ATP-binding, cell
junction; 1.60A {Homo sapiens}
Length = 88
Score = 41.9 bits (99), Expect = 3e-05
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 281 VPRLDPRADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTT 323
V ++ L GD I+EVN V+ +V ++ +
Sbjct: 31 VKQIVDSPRSRGLKEGDLIVEVNKKNVQALTHNQVVDMLVESP 73
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein
3; structural genomics consortium, SGC, PDZ domain,
signaling P; 1.60A {Homo sapiens}
Length = 113
Score = 42.5 bits (100), Expect = 4e-05
Identities = 8/51 (15%), Positives = 16/51 (31%)
Query: 273 TGMTNNPSVPRLDPRADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTT 323
V + L GD I E+ V++ +V +++
Sbjct: 30 ADSPTGQKVKMILDSQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFP 80
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 42.0 bits (99), Expect = 4e-05
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTVLQRQI 331
L +G ILEVNG +R K +E +I T + I
Sbjct: 51 LKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYI 89
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics,
structural genomics consort metal binding protein; 1.70A
{Homo sapiens} PDB: 3pdv_A
Length = 87
Score = 41.5 bits (98), Expect = 4e-05
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 281 VPRLDPR--ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
V ++ R A L GD I+ +NG E + IR + +
Sbjct: 30 VTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPL 77
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM
domain EVH1 DO cell motility, phosphorylation,
cytoskeleton; 2.35A {Homo sapiens}
Length = 65
Score = 41.0 bits (96), Expect = 4e-05
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 11 TCAGCLNNI-VEDEYVQALSQEWHT--DCFRCSACDV-MLDNWYFEKDGLLFCKED 62
C GC N I E + V + WH +CF CS C ++ + +G++FC +
Sbjct: 4 VCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVE 59
Score = 35.2 bits (81), Expect = 0.004
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 67 YGEACQNCGQMMS--GPVMVVGDHKFH--PECFKCTSCSCCIGDGESYALVERSILYCGL 122
+ CQ C + + + +H ECF C+ CS C+ G+ + VE + +C +
Sbjct: 1 HAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLI-GQKFMPVEGMV-FCSV 58
Query: 123 CYKRQM 128
K++M
Sbjct: 59 ECKKRM 64
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling
protein; 1.80A {Mus musculus}
Length = 106
Score = 42.0 bits (99), Expect = 4e-05
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 288 ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
A+ L GDR+L +NG V + +V L+R + ++V
Sbjct: 39 AEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSV 77
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain,
adaptor protein, SR-BI, signaling protein; 1.30A {Mus
musculus} PDB: 3r69_A*
Length = 95
Score = 41.9 bits (99), Expect = 4e-05
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 288 ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
A+ L D ++ VNG V V +IR D
Sbjct: 42 AEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQT 80
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain,
protein, acetylation, cell projection, disease mutation,
membrane; NMR {Homo sapiens}
Length = 128
Score = 42.5 bits (100), Expect = 5e-05
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 288 ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
A+ L DRI+EVNG + K +V IR D
Sbjct: 46 AEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDET 84
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1;
endoplasmic reticulum, postsynaptic membrane, membrane,
MEMB protein; 1.5A {Homo sapiens}
Length = 97
Score = 41.8 bits (99), Expect = 5e-05
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
+ GDR+L V+G + E +++
Sbjct: 51 IKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEA 84
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural
genomics, structura genomics consortium, SGC, signaling
protein; 1.12A {Homo sapiens} PDB: 2pku_A
Length = 114
Score = 42.1 bits (99), Expect = 5e-05
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
+ GD I VNG ++ K EV +I+ V
Sbjct: 69 VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEV 102
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 41.9 bits (99), Expect = 5e-05
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 288 ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
A + +GD++LEVNG ++ E +R V
Sbjct: 59 AARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAV 97
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 41.9 bits (99), Expect = 5e-05
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
L +GD +L +NG + + IR +
Sbjct: 57 LEVGDLVLHINGESTQGLTHAQAVERIRAGGPQL 90
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein;
structural protein-hydrolase complex, peptide binding
protei; NMR {Homo sapiens}
Length = 112
Score = 42.1 bits (99), Expect = 6e-05
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
LH+GD IL VNG +RD +E ++ +
Sbjct: 72 LHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEI 105
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 111
Score = 42.0 bits (99), Expect = 6e-05
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
L GD IL++ GT V+ ++V ++RN ++V
Sbjct: 57 LQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSV 90
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus
norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A
3o5n_A*
Length = 109
Score = 41.7 bits (98), Expect = 6e-05
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 288 ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
A L +GD ++EVNG V ++V +IR +T+
Sbjct: 58 AWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTL 96
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog;
PDZ domain, cellular signaling, structural genomics; NMR
{Mus musculus} SCOP: b.36.1.1
Length = 122
Score = 42.1 bits (99), Expect = 6e-05
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
L +GDR++ +NG P D +E L+R+++ T
Sbjct: 64 LQIGDRVMAINGIPTEDSTFEEANQLLRDSSITS 97
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform
B; GOPC PDZ domain, structural protein; NMR {Homo
sapiens}
Length = 103
Score = 41.6 bits (98), Expect = 6e-05
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
LH+GD IL VNG +RD +E ++ +
Sbjct: 54 LHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEI 87
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; transferase, STRU genomics, structural genomics
consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo
sapiens}
Length = 112
Score = 42.0 bits (99), Expect = 6e-05
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
+ +GD ILE+NG ++ LI+N V
Sbjct: 68 MRIGDEILEINGETTKNMKHSRAIELIKNGGRRV 101
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil,
PDZ, guanine-nucleotide releasing factor,
phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Length = 132
Score = 42.3 bits (99), Expect = 7e-05
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 288 ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
A L +GD ++EVNG V ++V +IR +T+
Sbjct: 78 AWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTL 116
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Length = 82
Score = 40.7 bits (96), Expect = 7e-05
Identities = 8/39 (20%), Positives = 14/39 (35%)
Query: 288 ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
A L I E+NG V ++ ++ + V
Sbjct: 36 AARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVV 74
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding;
2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A
1u37_A 1u38_A 2yt8_A
Length = 388
Score = 44.6 bits (104), Expect = 8e-05
Identities = 9/39 (23%), Positives = 20/39 (51%)
Query: 288 ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
A+ + +G RI+E+NG V +++ + N+ +
Sbjct: 328 AERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSVGEI 366
Score = 42.7 bits (99), Expect = 3e-04
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 286 PRADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
P A L +GD+I+ +NGT + PL + +I+ +
Sbjct: 244 PAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQT 284
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 104
Score = 41.2 bits (97), Expect = 8e-05
Identities = 8/40 (20%), Positives = 17/40 (42%)
Query: 288 ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTVL 327
A L GD++L VN +D + +++ + +
Sbjct: 54 AHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKTAREISM 93
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein;
1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 41.1 bits (97), Expect = 8e-05
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
L +GDRIL +NG VR+ Q V LI+ +
Sbjct: 56 LKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKI 89
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase,
protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Length = 125
Score = 41.7 bits (98), Expect = 8e-05
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
+ GD I VNG ++ K EV +I+ V
Sbjct: 64 VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEV 97
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 41.6 bits (97), Expect = 8e-05
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 288 ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTVLQR 329
A L GD ILE+N ++ + + +L R
Sbjct: 57 ASKKGLKAGDEILEINNRAADALNSSMLKDFLSQPSLGLLVR 98
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune
enteropathy-related antigen AIE-75 ,antigen
NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2kbs_A
Length = 114
Score = 41.3 bits (97), Expect = 1e-04
Identities = 9/40 (22%), Positives = 22/40 (55%)
Query: 288 ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTVL 327
+ + L +GD+I+EVNG + +E +++++ +
Sbjct: 54 SAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTI 93
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation,
leucine-rich repeat, alternative splicing, cytoplasm,
circletail, coiled coil; 1.30A {Homo sapiens}
Length = 97
Score = 40.7 bits (96), Expect = 1e-04
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 288 ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
A + +GD++LEVNG ++ E +R V
Sbjct: 47 AARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAV 85
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 96
Score = 40.8 bits (96), Expect = 1e-04
Identities = 10/50 (20%), Positives = 20/50 (40%)
Query: 273 TGMTNNPSVPRLDPRADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNT 322
V ++ L GD I+E+N V++ EV ++++
Sbjct: 28 ADSPTGQRVKQILDIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDC 77
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural
proteomics in europe, spine, structural genomics,
hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 108
Score = 40.8 bits (96), Expect = 1e-04
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
+H GDR+L VNG + ++ +RNT V
Sbjct: 61 IHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVV 94
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 40.8 bits (96), Expect = 1e-04
Identities = 9/40 (22%), Positives = 20/40 (50%)
Query: 288 ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTVL 327
A+ L +GD+I EVNG + + ++ +++ +
Sbjct: 49 AERAGLCVGDKITEVNGLSLESTTMGSAVKVLTSSSRLHM 88
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.35A {Homo sapiens}
Length = 97
Score = 40.7 bits (96), Expect = 1e-04
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
+ +GD+I+ V+GT ++ Q+ ++R+T TV
Sbjct: 52 IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTV 85
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR
{Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A
1vj6_A 1gm1_A 1ozi_A
Length = 96
Score = 40.6 bits (96), Expect = 1e-04
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
+H GDR+L VNG + ++ +RNT V
Sbjct: 52 IHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVV 85
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3;
transferase, pseudo kinase domain, vaccinia related
kinase, ATP-binding; 2.00A {Homo sapiens}
Length = 352
Score = 44.0 bits (104), Expect = 1e-04
Identities = 23/171 (13%), Positives = 48/171 (28%), Gaps = 16/171 (9%)
Query: 485 GPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHGLI 544
+ G +Y T + + + + + + + +
Sbjct: 47 KSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKDGRLFNEQNFF-QRAAKPLQV 105
Query: 545 NNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLN-LVTEYIAGGTLKELLQD-PGQPLPW 602
N L S + +G K LV + G +L+ L P L
Sbjct: 106 NKWK------KLYSTPLLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVLSE 158
Query: 603 GQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVREVGSGFDFHLGQIYLI 653
+ A + + +LH +H ++ ++N V Q+ L
Sbjct: 159 RSVLQVACRLLDALEFLHENEYVHGNVTAENIF---VDPE---DQSQVTLA 203
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.7A {Homo sapiens} PDB:
2iwp_A
Length = 120
Score = 41.2 bits (97), Expect = 1e-04
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
L +GDRI+ + GT + L++N + ++
Sbjct: 72 LRVGDRIVTICGTSTEGMTHTQAVNLLKNASGSI 105
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative
splicing, cell junction, cell membrane, lipoprotein,
membrane, palmitate, phosphoprotein; 1.35A {Homo
sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Length = 104
Score = 40.8 bits (96), Expect = 1e-04
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
L GD+IL VNG +R+ ++ ++N TV
Sbjct: 54 LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTV 87
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger,
oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1
PDB: 1qav_B
Length = 112
Score = 40.9 bits (96), Expect = 1e-04
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
+ GD IL VN P+ D ++R
Sbjct: 45 IQAGDIILAVNDRPLVDLSYDSALEVLRGIASET 78
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Length = 118
Score = 40.9 bits (96), Expect = 1e-04
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNT 322
+ GD I+ +NG V D L E E ++
Sbjct: 62 VVKGDEIMAINGKIVTDYTLAEAEAALQKA 91
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1
interacting protein 1, activin receptor interacting
protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 40.4 bits (95), Expect = 1e-04
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
+ +GD+I+E+NG RD LI++ V
Sbjct: 55 MRVGDQIIEINGESTRDMTHARAIELIKSGGRRV 88
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, unknown function; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 40.8 bits (96), Expect = 2e-04
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
L LGDRILEVNG+ + LIR+ +
Sbjct: 55 LSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKM 88
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 40.4 bits (95), Expect = 2e-04
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDT-----VLQRQIL 332
LH GD ++ V+G PV K + V L+ + ++R++L
Sbjct: 53 LHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRKVL 97
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3,
DLG3-human presynaptic protein, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 113
Score = 40.4 bits (95), Expect = 2e-04
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
L GDRIL VNG +R+ ++ ++ +V
Sbjct: 58 LRRGDRILSVNGVNLRNATHEQAAAALKRAGQSV 91
>2opg_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 1.50A
{Homo sapiens}
Length = 98
Score = 40.0 bits (94), Expect = 2e-04
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
L GD+ILEVNG +R E ++R T V
Sbjct: 49 LWAGDQILEVNGIDLRKATHDEAINVLRQTPQRV 82
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker,
structural genomics, struc genomics consortium, SGC,
structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 40.0 bits (94), Expect = 2e-04
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
L GDRI+EV+G +RD ++ IR + V
Sbjct: 58 LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPV 91
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 116
Score = 40.5 bits (95), Expect = 2e-04
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
L GD+ILEVNG +R+ +E +R T V
Sbjct: 62 LWAGDQILEVNGVDLRNSSHEEAITALRQTPQKV 95
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural
genomics, structural GEN consortium, SGC, structural
protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1
PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Length = 94
Score = 39.6 bits (93), Expect = 2e-04
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
L +GDR+L VN T ++D +E ++NT+D V
Sbjct: 52 LQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMV 85
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 117
Score = 40.5 bits (95), Expect = 2e-04
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
L GD+ILEV+G +++ E I+N + V
Sbjct: 69 LKTGDKILEVSGVDLQNASHSEAVEAIKNAGNPV 102
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 129
Score = 40.5 bits (95), Expect = 2e-04
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
+ + D+I+ V+G ++ +V ++RN V
Sbjct: 65 IQVNDKIVAVDGVNIQGFANHDVVEVLRNAGQVV 98
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer,
membrane protein-oxidoreductase CO; 1.90A {Mus musculus}
SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Length = 90
Score = 39.6 bits (93), Expect = 3e-04
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
L +GD IL VNG + E ++ T V
Sbjct: 49 LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEV 82
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Length = 108
Score = 40.0 bits (94), Expect = 3e-04
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV---LQRQI 331
+ D+IL V+ V+ +V ++RN + V L R++
Sbjct: 63 IEPNDKILRVDDVNVQGMAQSDVVEVLRNAGNPVRLLLIRRL 104
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor
(LCF), structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.2
Length = 119
Score = 40.1 bits (94), Expect = 3e-04
Identities = 5/34 (14%), Positives = 15/34 (44%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
+ G+ +L +NG ++ + ++R +
Sbjct: 61 IQKGNEVLSINGKSLKGTTHHDALAILRQAREPR 94
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic
domain associated protein, structural genomics; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 39.7 bits (93), Expect = 3e-04
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
L + DRI+EVNG + + + + +
Sbjct: 60 LQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPI 93
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A;
serine/threonine-protein kinase, minibrain homolog,
nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A
{Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Length = 382
Score = 42.8 bits (101), Expect = 3e-04
Identities = 35/158 (22%), Positives = 60/158 (37%), Gaps = 30/158 (18%)
Query: 487 LLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKNFLKESKQGLI---YLIDLGSHGL 543
L+G+G FGQV + R E + +K + KN Q I L + H
Sbjct: 61 LIGKGSFGQVVKAYDRVEQEWVAIKII--------KNKKAFLNQAQIEVRLLELMNKHDT 112
Query: 544 INNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPG-QPLPW 602
+ V + R N L LV E + L +LL++ + +
Sbjct: 113 EMKYYI---VHLKRHFMFRN------------HLCLVFEML-SYNLYDLLRNTNFRGVSL 156
Query: 603 GQRVNFARDIAAGMTYLHS--MNLIHRDLNSQNCLVRE 638
FA+ + + +L + +++IH DL +N L+
Sbjct: 157 NLTRKFAQQMCTALLFLATPELSIIHCDLKPENILLCN 194
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell
projection, disease mutation, membrane, phosphoprotein,
polymorphism; NMR {Homo sapiens}
Length = 216
Score = 41.7 bits (97), Expect = 3e-04
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 288 ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
A+ L DRI+EVNG + K +V IR D
Sbjct: 46 AEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDET 84
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide
binding protein; 1.54A {Rattus norvegicus} SCOP:
b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Length = 119
Score = 40.1 bits (94), Expect = 3e-04
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
L GD+IL VNG +R+ ++ ++N TV
Sbjct: 57 LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTV 90
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.40A {Homo sapiens}
Length = 92
Score = 39.2 bits (92), Expect = 3e-04
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
L GD+IL VNG VR+ + V L++ + TV
Sbjct: 48 LMQGDQILMVNGEDVRNATQEAVAALLKCSLGTV 81
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane
protein 25, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 120
Score = 39.7 bits (93), Expect = 3e-04
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
L GD+IL VNG +++ Q+ L RN V
Sbjct: 66 LQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAV 99
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane,
HOST- interaction, structural genomics consortium,
synaptosome, T junction; 1.80A {Homo sapiens}
Length = 123
Score = 39.7 bits (93), Expect = 4e-04
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
L GDRI+EV+G +RD ++ IR + V
Sbjct: 78 LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPV 111
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction,
structural genom structural genomics consortium, SGC,
signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A
3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Length = 102
Score = 39.2 bits (92), Expect = 4e-04
Identities = 7/34 (20%), Positives = 12/34 (35%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
L + D +L VN V + ++ V
Sbjct: 53 LGVNDCVLRVNEVDVSEVVHSRAVEALKEAGPVV 86
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric
oxide synthase, oxidoreductase; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 127
Score = 39.8 bits (93), Expect = 4e-04
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
+ GD IL VN P+ D ++R
Sbjct: 52 IQAGDIILAVNDRPLVDLSYDSALEVLRGIASET 85
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 42.6 bits (99), Expect = 4e-04
Identities = 9/35 (25%), Positives = 13/35 (37%)
Query: 292 SLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
L + D IL VN VR+ ++ V
Sbjct: 107 RLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIV 141
Score = 42.6 bits (99), Expect = 4e-04
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
L GD+IL VNG +R+ ++ ++N TV
Sbjct: 350 LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTV 383
Score = 38.3 bits (88), Expect = 0.008
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 292 SLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
L +GD+IL VN + D ++ ++NT D V
Sbjct: 202 RLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVV 236
>2awx_A Synapse associated protein 97; membrane protein, synaptic
signaling, trafficking protein; HET: HIS; 1.80A {Rattus
norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Length = 105
Score = 39.3 bits (92), Expect = 4e-04
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
L +GD++L VN + + +E ++NT+D V
Sbjct: 52 LQIGDKLLAVNSVSLEEVTHEEAVTALKNTSDFV 85
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 111
Score = 39.3 bits (92), Expect = 4e-04
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
L +G R+LEVN + E L+R+ DT+
Sbjct: 63 LRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTL 96
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 124
Score = 39.7 bits (93), Expect = 4e-04
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
+ +GD +LE+N + + Q +I+ V
Sbjct: 70 MRIGDELLEINNQILYGRSHQNASAIIKTAPSKV 103
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane,
mitochondria distribution, PDZ, membrane, scaffold,
mitochondrion, membrane protein; 1.35A {Homo sapiens}
PDB: 2jin_A
Length = 101
Score = 38.8 bits (91), Expect = 5e-04
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
L GD+IL VNG +++ Q+ L RN V
Sbjct: 56 LQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAV 89
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled
coil, deafness, hearing, non-syndromic deafness,
polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A
Length = 192
Score = 40.7 bits (95), Expect = 5e-04
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 288 ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTVL 327
AD + L +GD I+ +NG + +EV LIR +
Sbjct: 123 ADSVGLQVGDEIVRINGYSISSCTHEEVINLIRTEKTVSI 162
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain,
structural genomics, structural genom consortium, SGC,
phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 39.3 bits (92), Expect = 5e-04
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
L +GDR+L VN + + +E +++NT++ V
Sbjct: 73 LQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVV 106
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain,
RAB3-interacting molecule, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Length = 131
Score = 39.8 bits (93), Expect = 5e-04
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
L GD +LE NG ++ +EV +I +
Sbjct: 84 LRPGDEVLEWNGRLLQGATFEEVYNIILESKPEP 117
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 39.2 bits (92), Expect = 5e-04
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
+ + D+I+EV+G + ++RNT V
Sbjct: 59 IQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNV 92
>3gge_A PDZ domain-containing protein GIPC2; structural genomics,
structural genomics consort protein binding; 2.60A {Homo
sapiens}
Length = 95
Score = 38.6 bits (90), Expect = 5e-04
Identities = 6/34 (17%), Positives = 13/34 (38%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
+ +GD I +NG + +V ++
Sbjct: 47 ICVGDHIESINGENIVGWRHYDVAKKLKELKKEE 80
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural
genomics, mouse cDNA, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 126
Score = 39.5 bits (92), Expect = 5e-04
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTT 323
L GD ++ V V L+E L++N T
Sbjct: 68 LQPGDVLISVGHANVLGYTLREFLKLLQNIT 98
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 41.7 bits (97), Expect = 5e-04
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 285 DPRADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
D A L GD+IL VN + +E + +
Sbjct: 41 DSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGE 82
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino
acid sequence, binding sites, domain, models, molecular;
HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Length = 364
Score = 41.7 bits (98), Expect = 5e-04
Identities = 30/175 (17%), Positives = 58/175 (33%), Gaps = 24/175 (13%)
Query: 485 GPLLGQGFFGQVYRVTHRETGEVMVLKELYRVDEEAEKN--FLKESKQGLIYLIDLGSHG 542
G +GQG FG +Y + E + V E N E K Y
Sbjct: 40 GLPIGQGGFGCIYLA-DMNSSESVGSDAPCVVKVEPSDNGPLFTELK---FYQR------ 89
Query: 543 LINNLHCFSQVAVLRSLHHHNVIRFIG---VLYKDRKLN-LVTEYIAGGTLKELLQDPGQ 598
+ R L + V ++ G + ++ + G L+++ + +
Sbjct: 90 -AAKPEQIQKWIRTRKLKYLGVPKYWGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEANAK 147
Query: 599 PLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVREVGSGFDFHLGQIYLI 653
+ + I + Y+H +H D+ + N L + + Q+YL+
Sbjct: 148 RFSRKTVLQLSLRILDILEYIHEHEYVHGDIKASNLL---LNYK---NPDQVYLV 196
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 105
Score = 38.9 bits (91), Expect = 6e-04
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
L +GDR+L +NG V + L+ + T+
Sbjct: 57 LQVGDRVLSINGVDVTEARHDHAVSLLTAASPTI 90
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain,
ptpase, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 119
Score = 39.1 bits (91), Expect = 7e-04
Identities = 7/34 (20%), Positives = 18/34 (52%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
L+ GD+++ +NG + + +V I+ + +
Sbjct: 61 LNEGDQVVLINGRDIAEHTHDQVVLFIKASCERH 94
>2fne_A Multiple PDZ domain protein; structural protein, structural
genomics, SGC, structural genomics consortium, unknown
function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 38.9 bits (91), Expect = 7e-04
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
L GD+I+ VNG + +E +++ T TV
Sbjct: 72 LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTV 105
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural
genomics, structural genomics consortium, SGC,
metal-binding; 1.75A {Homo sapiens}
Length = 118
Score = 38.9 bits (91), Expect = 8e-04
Identities = 11/47 (23%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTVLQRQILKECRIKD 339
+ GD +L V+G + + E L++ T+ ++ +LK +K+
Sbjct: 72 IKTGDILLNVDGVELTEVSRSEAVALLKRTSSSI----VLKALEVKE 114
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission,
protein binding; NMR {Rattus norvegicus}
Length = 113
Score = 38.5 bits (90), Expect = 8e-04
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
+ + D ++EV+GT + ++RNT V
Sbjct: 54 IQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRV 87
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding
site complex, protein binding; 1.43A {Homo sapiens} PDB:
3nfl_A 2vph_A
Length = 107
Score = 38.3 bits (89), Expect = 0.001
Identities = 7/34 (20%), Positives = 18/34 (52%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
L+ GD+++ +NG + + +V I+ + +
Sbjct: 63 LNEGDQVVLINGRDIAEHTHDQVVLFIKASCERH 96
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor,
PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Length = 130
Score = 38.6 bits (90), Expect = 0.001
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTVLQRQILKE 334
+ GD IL++ GT ++ E +I+ D + I ++
Sbjct: 76 VQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRK 117
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell
adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A*
1t2m_A 2ain_A
Length = 106
Score = 38.1 bits (89), Expect = 0.001
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
L GD++L V+G + + L+ T+ V
Sbjct: 57 LAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVV 90
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 108
Score = 38.1 bits (89), Expect = 0.001
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTVLQRQILKECR 336
L GDR++ VN + + L E +++ ++ L C
Sbjct: 63 LLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVH---LGICS 103
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding,
nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens}
PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Length = 139
Score = 38.9 bits (90), Expect = 0.001
Identities = 10/41 (24%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 288 ADLMSLHLGDRILEVNGTPVRDKPLQE-VECLIRNTTDTVL 327
A++ L +GD+I++VNG + + + L + + + V
Sbjct: 77 AEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVR 117
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti
density, glutametergic receptors, carbohydrate
metabolism, cycle, cell division; HET: MES; 1.85A
{Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Length = 170
Score = 39.2 bits (91), Expect = 0.001
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV---LQRQ 330
+ + D ++EV+GT + ++RNT V + R+
Sbjct: 130 IQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRE 170
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 117
Score = 37.8 bits (88), Expect = 0.002
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
L DR++ VNGTP+ D +R +
Sbjct: 63 LQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIA 96
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein,
STXBP4 protein, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: b.36.1.1
Length = 109
Score = 37.4 bits (87), Expect = 0.002
Identities = 7/44 (15%), Positives = 16/44 (36%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTVLQRQILKECR 336
L GD+++ +N + +E + +I + R
Sbjct: 60 LKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIR 103
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 39.9 bits (92), Expect = 0.002
Identities = 9/39 (23%), Positives = 14/39 (35%)
Query: 288 ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
A L GD+IL VN + +E + +
Sbjct: 36 AAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGE 74
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion;
1.99A {Homo sapiens} PDB: 3shu_A
Length = 124
Score = 37.5 bits (87), Expect = 0.002
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
Query: 288 ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDT-----VLQRQILKECRIKD 339
A L GD+IL VN + +E + + + Q++ RI +
Sbjct: 64 AAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVE 120
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high
affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB:
2h2c_A 2h3m_A 2rrm_A
Length = 107
Score = 37.0 bits (86), Expect = 0.003
Identities = 7/34 (20%), Positives = 12/34 (35%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
L DR+ VNG + + +R +
Sbjct: 56 LQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNA 89
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; PDZ, E6 binding, tumor suppressor, peptide
binding protein; 2.15A {Mus musculus}
Length = 85
Score = 36.5 bits (85), Expect = 0.003
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNT 322
+ GD I+ VN T V +V + ++
Sbjct: 44 METGDVIVSVNDTCVLGHTHAQVVKIFQSI 73
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding,
membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Length = 345
Score = 39.3 bits (92), Expect = 0.003
Identities = 36/177 (20%), Positives = 60/177 (33%), Gaps = 31/177 (17%)
Query: 485 GPLLGQGFFGQVYRVTHRETGE---VMVLKELYRVDEEAEKNFLK-ESKQGLIYLIDLGS 540
G +G G FG +Y E V+K E E L E K Y
Sbjct: 42 GKKIGSGGFGLIYLAFPTNKPEKDARHVVKV-----EYQENGPLFSELK---FYQR---- 89
Query: 541 HGLINNLHCFSQVAVLRSLHHHNVIRFIG---VLYKDRKLN-LVTEYIAGGTLKELLQDP 596
+ C + + L + + F G +K R +V E + G L+++
Sbjct: 90 ---VAKKDCIKKWIERKQLDYLGIPLFYGSGLTEFKGRSYRFMVMERL-GIDLQKISGQN 145
Query: 597 GQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVREVGSGFDFHLGQIYLI 653
G + + + Y+H +H D+ + N L +G + Q+YL
Sbjct: 146 GT-FKKSTVLQLGIRMLDVLEYIHENEYVHGDIKAANLL---LGYK---NPDQVYLA 195
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; PDZ domain, ATP-binding, cell junction, cell
membrane; NMR {Homo sapiens} PDB: 2kpl_A
Length = 129
Score = 37.5 bits (87), Expect = 0.003
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNT 322
+ GD I+ VN T V +V + ++
Sbjct: 62 METGDVIVSVNDTCVLGHTHAQVVKIFQSI 91
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex,
erbin., signaling protein; 1.25A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1mfl_A
Length = 95
Score = 36.2 bits (84), Expect = 0.003
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
L GD+I++ NG + + L++ +TV
Sbjct: 52 LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTV 85
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 123
Score = 37.0 bits (86), Expect = 0.004
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTT 323
+ GD I+ +N V +V L ++
Sbjct: 63 METGDVIVYINEVCVLGHTHADVVKLFQSVP 93
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal
peptide complex, high affnity ligand, signaling protein;
NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Length = 103
Score = 36.3 bits (84), Expect = 0.004
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
L GD+I++ NG + + L++ +TV
Sbjct: 60 LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTV 93
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; Cys Ser mutant, S genomics consortium, SGC,
transferase; 2.00A {Homo sapiens}
Length = 90
Score = 36.1 bits (84), Expect = 0.004
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
L GD ++ V+GTPV K Q V L++
Sbjct: 46 LRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQG 79
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI,
structural genomics, alternative splicing, cell cycle,
cell division, cell junction; NMR {Homo sapiens}
Length = 121
Score = 36.6 bits (85), Expect = 0.005
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTVLQRQILKECRIKD 339
L GDR++EVNG + K +EV L+R+T L R +D
Sbjct: 77 LKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVS--LLVFRQED 121
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase;
endopeptidase activity, protein kinase activity; HET:
TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A*
2vwb_A*
Length = 540
Score = 38.9 bits (91), Expect = 0.005
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Query: 579 LVTEYIAGGTLKELLQDPGQPLPWGQRVNFARDIAAGMTYLHSMNLIHRDLNSQNCLVRE 638
++ YI G K++++D ++ A I + LH ++IH DL + N + +
Sbjct: 416 IMMSYINGKLAKDVIED---------NLDIAYKIGEIVGKLHKNDVIHNDLTTSNFIFDK 466
Query: 639 VGSGFDFHLGQI 650
DF LG+I
Sbjct: 467 DLYIIDFGLGKI 478
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Length = 263
Score = 38.2 bits (88), Expect = 0.006
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTVL 327
L +GD IL VNG + E ++ T V+
Sbjct: 122 LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVV 156
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics,
alternative splicing, cell cycle, cell division, cell
junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Length = 111
Score = 36.1 bits (84), Expect = 0.007
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNT 322
L GDR++EVNG + K +EV L+R+T
Sbjct: 58 LKAGDRLIEVNGVDLAGKSQEEVVSLLRST 87
>2edp_A Fragment, shroom family member 4; APX/shroom family member,
KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 100
Score = 35.0 bits (81), Expect = 0.012
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
+ GD ++ +NGTP+ QE LI+ + +
Sbjct: 54 MRTGDELVNINGTPLYGSR-QEALILIKGSFRIL 86
>2o2t_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 2.70A
{Homo sapiens}
Length = 117
Score = 34.7 bits (80), Expect = 0.019
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 293 LHLGDRILEVNGTPVRDKPLQE--VECLIRNTTDTV 326
L D+IL +NG + + + L + DTV
Sbjct: 68 LKETDQILAINGQALDQTITHQQAISIL-QKAKDTV 102
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight
junction protein, protein associated to tight junctions,
PATJ, structural genomics; NMR {Homo sapiens}
Length = 128
Score = 35.1 bits (81), Expect = 0.019
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 293 LHLGDRILEVNGTPV-RDKPLQEVECLIRNTTDTV 326
L D+IL +N TP+ ++ Q+ L++ TT ++
Sbjct: 73 LKENDQILAINHTPLDQNISHQQAIALLQQTTGSL 107
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ,
cell junction, cell adhesion, signaling protein,
nucleotide exchange factor; 1.30A {Homo sapiens} PDB:
3kze_A
Length = 94
Score = 34.2 bits (78), Expect = 0.020
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 288 ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTVLQR 329
A L GD ILE+N ++ + + +L R
Sbjct: 48 ASKKGLKAGDEILEINNRAADALNSSMLKDFLSQPSLGLLVR 89
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease,
serine protease, serine- lysine catalytic DYAD, PDZ
domain, photosynthesis; 1.80A {Scenedesmus obliquus}
SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Length = 388
Score = 36.5 bits (85), Expect = 0.026
Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 287 RADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTVLQRQILKECRIKDLIIEVCL 346
+A + GD I+ V+GT V+ L +V L++ D+ ++ + + + L
Sbjct: 114 KAGARA---GDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGAPSN-TRTLQL 169
Query: 347 ER 348
R
Sbjct: 170 TR 171
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase,
alternative splicing, ATP-binding, chromosome partition,
differentiation, mRNA processing; 1.73A {Homo sapiens}
PDB: 1wbp_A* 3beg_A* 2x7g_A*
Length = 397
Score = 36.0 bits (83), Expect = 0.040
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 579 LVTEYIAGGTLKELLQD-PGQPLPWGQRVNFARDIAAGMTYLHS-MNLIHRDLNSQNCLV 636
+V E + G L + + Q LP + + G+ YLH+ +IH D+ +N L+
Sbjct: 122 MVFE-VLGHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKCRIIHTDIKPENILL 180
Query: 637 R 637
Sbjct: 181 S 181
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics,
PDZ domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB:
2koh_A 2k1z_A 2k20_A
Length = 127
Score = 33.6 bits (77), Expect = 0.064
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTV 326
L + D+++ VNG + K E +R +
Sbjct: 74 LRMNDQLIAVNGETLLGKSNHEAMETLRRSMSME 107
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand,
cytoplasm, developmental protein, phosphoprotein, WNT
signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A
3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Length = 108
Score = 32.8 bits (75), Expect = 0.087
Identities = 6/33 (18%), Positives = 14/33 (42%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDT 325
+ GD +L+VN + + ++R+
Sbjct: 52 IEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHK 84
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 124
Score = 32.9 bits (75), Expect = 0.087
Identities = 10/41 (24%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTVLQRQILK 333
+ GDRI+++NG V+++ +E L+ + + I +
Sbjct: 67 IREGDRIIQINGIEVQNR--EEAVALLTSEENKNFSLLIAR 105
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn
complex, rRNA processing, transferase; HET: ADP; 1.75A
{Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB:
1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Length = 282
Score = 34.5 bits (79), Expect = 0.093
Identities = 16/104 (15%), Positives = 30/104 (28%), Gaps = 21/104 (20%)
Query: 553 VAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKELLQDPGQPLPWGQRVNFARDI 612
L+ L V + ++ E I L + + + I
Sbjct: 155 FRALQKLQGLAVPKVYAW----EGNAVLMELIDAKELYRVRVENPDEV--------LDMI 202
Query: 613 AAGMTYLHSMNLIHRDLNSQNCLVREVGSGFDFHLGQIYLIYVP 656
+ + ++H DL+ N LV I++I P
Sbjct: 203 LEEVAKFYHRGIVHGDLSQYNVLV---------SEEGIWIIDFP 237
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein
structure initiative; NMR
{Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Length = 125
Score = 32.5 bits (74), Expect = 0.12
Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTT--DTV 326
L G I +NG P + L ++ + + +
Sbjct: 42 LTPGLVIESINGMPTSN--LTTYSAALKTISVGEVI 75
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein,
PDZ domain, hydrolase, inner membrane, membrane,
metal-binding; HET: MLY MSE; 0.98A {Escherichia coli}
PDB: 3id2_A 3id3_A 3id4_A
Length = 91
Score = 31.7 bits (72), Expect = 0.14
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTVLQRQILKECRIKDLII 342
L GDRI+ V+G P+ L+R+ L +I ++ L +
Sbjct: 22 LQAGDRIVXVDGQPLTQ--WVTFVMLVRDNPGXSLALEIERQGSPLSLTL 69
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 33.1 bits (75), Expect = 0.19
Identities = 7/36 (19%), Positives = 10/36 (27%), Gaps = 5/36 (13%)
Query: 71 CQNCGQMMSGPVMVVGDHKFHPECFKCTSCSCCIGD 106
C C P +V + C C + D
Sbjct: 24 CPECK---VYPPKIVERFS-EGDVV-CALCGLVLSD 54
Score = 30.8 bits (69), Expect = 1.1
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 2 EDSETPEILTCAGCLNNIVEDEYVQALSQEWHT 34
E +++ CA C +V + + EW T
Sbjct: 36 ERFSEGDVV-CALC--GLVLSDKLVDTRSEWRT 65
>1k32_A Tricorn protease; protein degradation, substrate gating, serine
protease, beta propeller, proteasome, hydrolase; 2.00A
{Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1
b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Length = 1045
Score = 33.2 bits (75), Expect = 0.33
Identities = 5/33 (15%), Positives = 11/33 (33%), Gaps = 2/33 (6%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTDT 325
G I +++G V + ++ T
Sbjct: 775 DPTGYLIEDIDGETV--GAGSNIYRVLSEKAGT 805
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP,
manganese, transferase; HET: ADP; 1.89A {Archaeoglobus
fulgidus} PDB: 1zp9_A* 1ztf_A*
Length = 258
Score = 32.3 bits (73), Expect = 0.40
Identities = 26/165 (15%), Positives = 49/165 (29%), Gaps = 7/165 (4%)
Query: 485 GPLLGQGFFGQVYRVTHR--ETGEVMVLKELYRVDEEAEKNFLKESKQGLIYLIDLGSHG 542
G ++ G V+ M +K +YR++ + + + S
Sbjct: 52 GGVISTGKEANVFYADGVFDGKPVAMAVK-IYRIETSEFDKMDEYLYGDERFDMRRISPK 110
Query: 543 LINNLHCFSQVAVLRSLHHHNVIRFIGVLYKDRKLNLVTEYIAGGTLKEL-LQDPGQPLP 601
+ + L V Y L + E+I L L + G+ L
Sbjct: 111 EKVFIWTEKEFRNLERAKEAGVSVPQPYTYMKNVL--LMEFIGEDELPAPTLVELGRELK 168
Query: 602 WGQRVNFARDIAAGMTYLHS-MNLIHRDLNSQNCLVREVGSGFDF 645
D+ + L+ L+H DL+ N + + D
Sbjct: 169 ELDVEGIFNDVVENVKRLYQEAELVHADLSEYNIMYIDKVYFIDM 213
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium; NMR {Geobacillus thermodenitrificans}
Length = 94
Score = 29.2 bits (66), Expect = 1.0
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTT--DTV 326
L GDRI ++G P+ +++ +R D V
Sbjct: 22 LEAGDRIAAIDGQPINT--SEQIVSYVREKQAGDRV 55
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell
membrane, hydrolase, membrane, protease, serine
protease, transmembrane; NMR {Bacillus subtilis}
Length = 91
Score = 29.2 bits (66), Expect = 1.2
Identities = 4/17 (23%), Positives = 10/17 (58%)
Query: 293 LHLGDRILEVNGTPVRD 309
+ +GD+I+ +G +
Sbjct: 18 IEVGDKIISADGKNYQS 34
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 29.9 bits (66), Expect = 1.7
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 293 LHLGDRILEVNGTPVRDKPLQEVECLIRNTTD 324
L GD+I++ NG + + L++ +
Sbjct: 41 LQPGDKIIQANGYSFINIEHGQAVSLLKTFQN 72
>1n28_B Phospholipase A2, membrane associated; hydrolase; 1.50A {Homo
sapiens} SCOP: a.133.1.2 PDB: 1n29_A 1kvo_A* 1ayp_A
1db4_A* 1db5_A* 1dcy_A* 1j1a_A* 1bbc_A* 1kqu_A* 1pod_A
1poe_A*
Length = 124
Score = 29.2 bits (65), Expect = 2.1
Identities = 11/47 (23%), Positives = 13/47 (27%), Gaps = 2/47 (4%)
Query: 66 KYGEACQNCGQMMSGPVMVVGDH--KFHPECFKCTSCSCCIGDGESY 110
YG +CG G D C+K C SY
Sbjct: 20 SYGFYGCHCGVGGRGSPKDATDRCCVTQDCCYKRLEKRGCGTKFLSY 66
>3k50_A Putative S41 protease; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative;
2.00A {Bacteroides fragilis nctc 9343}
Length = 403
Score = 30.1 bits (68), Expect = 2.2
Identities = 6/36 (16%), Positives = 14/36 (38%)
Query: 296 GDRILEVNGTPVRDKPLQEVECLIRNTTDTVLQRQI 331
G I+ +NG + K E+ + +++
Sbjct: 111 GHWIMMMNGDYITKKVESELLQGSTRQLQIGVYKEV 146
>3vbz_A Phospholipase A2 homolog, taipoxin beta chain; phospholipase A2
fold, PLA2 fold, neurotoxin, binding; 1.76A {Oxyuranus
scutellatus scutellatus} PDB: 3vc0_A
Length = 118
Score = 28.8 bits (64), Expect = 2.4
Identities = 9/47 (19%), Positives = 15/47 (31%), Gaps = 2/47 (4%)
Query: 66 KYGEACQNCGQMMSGPVMVVGDH--KFHPECFKCTSCSCCIGDGESY 110
+ CG + G + D + H EC+ C +Y
Sbjct: 21 DFMNYGCYCGTVGRGTPVDDLDRCCQVHDECYATAEKHGCYPSLTTY 67
>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1
protein; PDZ domain, structural genomics consortium,
SGC, hydrolase R; 2.29A {Homo sapiens}
Length = 101
Score = 28.3 bits (62), Expect = 2.7
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 288 ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNT 322
A++ L +G +I +N V +P EVE ++ +
Sbjct: 52 AEVAGLQVGRKIYSINEDLVFLRPFSEVESILNQS 86
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease,
trypsin, chaperone, PDZ, ATP-independent,
temperature-regulated, periplasm; 2.80A {Escherichia
coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A
3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Length = 448
Score = 30.0 bits (68), Expect = 3.1
Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 288 ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTVL 327
A + L GD I+ N V++ + E+ ++ + +
Sbjct: 396 AAQIGLKKGDVIIGANQQAVKN--IAELRKVLDSKPSVLA 433
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus
scrofa} SCOP: g.39.1.4
Length = 31
Score = 26.2 bits (57), Expect = 3.2
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 11 TCAGCLNNIVEDEYVQALSQEWHTDCF 37
CA C + E V L + WH CF
Sbjct: 5 NCARCGKIVYPTEKVNCLDKFWHKACF 31
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase;
2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Length = 451
Score = 29.6 bits (67), Expect = 3.5
Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 288 ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTVL 327
+ GD I+ N PV D ++ ++ + + +L
Sbjct: 399 GWRAGIRPGDIIISANKKPVTD--VKSLQTIAQEKKKELL 436
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone,
hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A
4a9g_A
Length = 436
Score = 29.5 bits (67), Expect = 3.5
Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Query: 288 ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTDTVL 327
A L D I+ VN V + E+ ++ +
Sbjct: 376 AAQAGLQKDDVIIGVNRDRVNS--IAEMRKVLAAKPAIIA 413
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain,
forkhead-associated domai domain, PRE-mRNA retention and
splicing; 1.80A {Saccharomyces cerevisiae}
Length = 158
Score = 28.6 bits (63), Expect = 3.9
Identities = 22/139 (15%), Positives = 43/139 (30%), Gaps = 19/139 (13%)
Query: 446 YNSPPKSLRPACDLSRTRSRSFRVEASKSRIFRASDLVRGPLLGQGFFGQVYRVTHRETG 505
+ P ++ P + + + I+R +D +GP G+ + RE G
Sbjct: 6 HVEPQDAISPDNYMDMLGLEARDRTMYELVIYRKNDKDKGPWKRYDLNGRSCYLVGRELG 65
Query: 506 EVMVLKELYRVDEE---------------AEKNFLKESKQGLIYLIDLGS-HG-LINNLH 548
+ R + F Y++DL S +G +NN+
Sbjct: 66 HSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVRGILKCYVMDLDSSNGTCLNNVV 125
Query: 549 CFSQVAVLRSLHHHNVIRF 567
+ L +V+
Sbjct: 126 IPGARYI--ELRSGDVLTL 142
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane,
ionotropic glutamate receptors, transmembrane, membrane
protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Length = 265
Score = 28.9 bits (64), Expect = 5.2
Identities = 6/38 (15%), Positives = 15/38 (39%)
Query: 203 VLSVIVSATEPYLSRIKFASSGNRGLSGSCKGLMAEIA 240
VL V+ EP++ + + G ++ ++
Sbjct: 4 VLRVVTVLEEPFVMVSENVLGKPKKYQGFSIDVLDALS 41
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology,
northeast structural genom consortium, NESG,
peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Length = 597
Score = 29.2 bits (64), Expect = 5.2
Identities = 7/54 (12%), Positives = 18/54 (33%), Gaps = 3/54 (5%)
Query: 288 ADLMSLHLGDRILEVNGTPVRDKPLQEVECLIRNTTD---TVLQRQILKECRIK 338
A L GD+I+ ++ ++ ++ + +R L +
Sbjct: 509 AYHAGLSAGDKIIAIDHLQATEQSVKRILERYIPGDTVTIHAFRRDELMTLELT 562
>4e4c_A Phospholipase A2; hydrolase; HET: MES; 1.80A {Notechis scutatus
scutatus} PDB: 1ae7_A* 2not_A
Length = 119
Score = 27.6 bits (61), Expect = 5.9
Identities = 11/47 (23%), Positives = 16/47 (34%), Gaps = 2/47 (4%)
Query: 66 KYGEACQNCGQMMSGPVMVVGDH--KFHPECFKCTSCSCCIGDGESY 110
Y + CG SG + D K H +C+ C +Y
Sbjct: 21 HYMDYGCYCGAGGSGTPVDELDRCCKIHDDCYDEAGKKGCFPKMSAY 67
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A
{Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1
d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*
Length = 907
Score = 28.4 bits (64), Expect = 8.7
Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 21/97 (21%)
Query: 533 IYLIDLGSHGLINNLHCFSQVAVLRSLHHHNVIRFI---------GVL----YKD-RKLN 578
Y DLG LH +A++++ H I+ I GV +KD + N
Sbjct: 194 DYGADLGLKMPAGTLH----LAMVQAKVSHANIKGIDTSEALTMPGVHSVITHKDVKGKN 249
Query: 579 LVTEYIAGGTLKELLQDPGQPLPWGQRVNFARD-IAA 614
+T I T K D +P+ ++V D IA
Sbjct: 250 RITGLITFPTNKGDGWD--RPILCDEKVFQYGDCIAL 284
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger,
transferase-structural protein; 1.47A {Homo sapiens}
PDB: 2ln0_A
Length = 112
Score = 26.9 bits (59), Expect = 8.8
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 10/60 (16%)
Query: 70 ACQNCGQ------MMSGPVMVVGDHKFHPECFKCTSCSCCIGDGESYALVERSILYCGLC 123
+C +CG + P + V +C +C +CS C G++ ++L+C C
Sbjct: 28 SCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSCRDQGKN----ADNMLFCDSC 83
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.139 0.435
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,452,275
Number of extensions: 636168
Number of successful extensions: 2719
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2187
Number of HSP's successfully gapped: 607
Length of query: 681
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 581
Effective length of database: 3,909,693
Effective search space: 2271531633
Effective search space used: 2271531633
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (27.4 bits)