Query psy5069
Match_columns 113
No_of_seqs 116 out of 1083
Neff 5.3
Searched_HMMs 46136
Date Sat Aug 17 00:58:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5069.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5069hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1287|consensus 99.5 1.2E-14 2.7E-19 123.5 4.0 70 44-113 4-73 (479)
2 PRK15049 L-asparagine permease 99.4 3.3E-13 7.1E-18 113.5 7.0 62 49-112 25-86 (499)
3 PRK10836 lysine transporter; P 99.4 3E-13 6.5E-18 112.7 6.2 64 48-112 11-74 (489)
4 PRK11387 S-methylmethionine tr 99.4 6.9E-13 1.5E-17 109.9 5.7 64 48-112 10-73 (471)
5 PRK10249 phenylalanine transpo 99.3 1.4E-12 3E-17 108.1 5.4 65 46-112 15-79 (458)
6 TIGR00911 2A0308 L-type amino 99.3 7.3E-12 1.6E-16 104.4 8.3 67 46-112 36-102 (501)
7 PRK11357 frlA putative fructos 99.3 7.1E-12 1.5E-16 102.8 6.8 65 48-112 4-68 (445)
8 TIGR01773 GABAperm gamma-amino 99.2 8.3E-12 1.8E-16 102.6 5.3 64 47-112 7-70 (452)
9 TIGR00906 2A0303 cationic amin 99.2 1.2E-11 2.7E-16 105.7 6.0 63 48-112 24-87 (557)
10 PRK10238 aromatic amino acid t 99.2 1.2E-11 2.7E-16 102.4 5.8 63 48-112 8-70 (456)
11 PRK10580 proY putative proline 99.2 1.1E-11 2.4E-16 102.3 5.0 64 47-112 4-67 (457)
12 PRK11049 D-alanine/D-serine/gl 99.2 1.4E-11 2.9E-16 102.3 4.7 63 48-112 16-78 (469)
13 KOG1286|consensus 99.2 1.1E-11 2.3E-16 107.1 3.8 66 46-112 24-89 (554)
14 PRK10435 cadB lysine/cadaverin 99.2 1.7E-11 3.8E-16 100.7 4.6 61 49-112 2-62 (435)
15 PRK10644 arginine:agmatin anti 99.2 2.4E-11 5.1E-16 99.9 5.1 63 48-113 4-66 (445)
16 PRK10746 putative transport pr 99.2 2.2E-11 4.7E-16 101.4 4.8 63 48-112 6-68 (461)
17 TIGR00913 2A0310 amino acid pe 99.2 6E-11 1.3E-15 98.0 6.2 61 51-112 1-61 (478)
18 PRK10655 potE putrescine trans 99.2 4.4E-11 9.5E-16 97.8 5.3 61 49-112 3-63 (438)
19 TIGR03810 arg_ornith_anti argi 99.1 1.1E-10 2.3E-15 96.8 5.2 60 52-112 1-60 (468)
20 PRK11021 putative transporter; 99.1 1.1E-10 2.3E-15 95.0 5.0 57 54-112 1-57 (410)
21 TIGR00905 2A0302 transporter, 99.1 1.4E-10 2.9E-15 96.3 5.3 62 50-112 5-66 (473)
22 COG0833 LysP Amino acid transp 99.1 2.6E-10 5.6E-15 98.4 6.7 63 49-112 41-103 (541)
23 TIGR00909 2A0306 amino acid tr 98.8 6.2E-09 1.3E-13 84.5 5.8 61 50-112 1-61 (429)
24 TIGR00908 2A0305 ethanolamine 98.8 1.2E-08 2.7E-13 83.5 5.5 64 47-112 2-65 (442)
25 TIGR03428 ureacarb_perm permea 98.7 8.1E-09 1.7E-13 85.8 4.1 64 47-112 8-72 (475)
26 PRK10197 gamma-aminobutyrate t 98.7 8.4E-09 1.8E-13 85.4 2.5 49 62-112 2-50 (446)
27 TIGR00930 2a30 K-Cl cotranspor 98.7 3E-08 6.4E-13 90.3 5.7 63 49-112 73-136 (953)
28 TIGR00907 2A0304 amino acid pe 98.6 3.5E-08 7.5E-13 81.8 3.6 65 47-112 7-72 (482)
29 COG1113 AnsP Gamma-aminobutyra 98.4 2.2E-07 4.8E-12 79.2 4.9 63 47-111 8-70 (462)
30 COG0531 PotE Amino acid transp 98.3 1.1E-06 2.4E-11 70.9 6.0 65 45-112 5-70 (466)
31 PF13520 AA_permease_2: Amino 98.1 3.5E-06 7.6E-11 68.0 4.8 55 54-112 1-56 (426)
32 TIGR00912 2A0309 spore germina 98.0 4.2E-06 9E-11 66.8 3.6 58 53-112 2-59 (359)
33 PRK15238 inner membrane transp 97.9 2.1E-05 4.6E-10 65.9 5.6 60 49-113 4-64 (496)
34 PHA02764 hypothetical protein; 97.6 0.00013 2.9E-09 60.8 5.6 65 46-112 6-71 (399)
35 TIGR00837 araaP aromatic amino 97.5 3.2E-05 6.9E-10 62.2 0.9 51 60-112 3-53 (381)
36 PF00324 AA_permease: Amino ac 97.5 1.8E-05 3.9E-10 65.6 -1.1 54 58-112 1-54 (478)
37 KOG1289|consensus 97.4 0.00018 3.8E-09 62.8 3.9 65 47-112 43-108 (550)
38 TIGR03813 put_Glu_GABA_T putat 96.6 0.0037 8E-08 52.1 4.8 56 52-113 1-57 (474)
39 TIGR00910 2A0307_GadC glutamat 96.1 0.0072 1.6E-07 51.3 4.4 56 51-112 3-59 (507)
40 PF03222 Trp_Tyr_perm: Tryptop 95.5 0.024 5.2E-07 47.1 4.9 58 52-111 1-58 (394)
41 PRK10483 tryptophan permease; 95.0 0.042 9.2E-07 46.5 5.0 61 49-111 6-66 (414)
42 COG0814 SdaC Amino acid permea 94.9 0.063 1.4E-06 44.9 5.6 61 49-111 4-64 (415)
43 PRK09664 tryptophan permease T 94.3 0.065 1.4E-06 45.4 4.3 55 55-111 10-64 (415)
44 PF01235 Na_Ala_symp: Sodium:a 91.8 0.43 9.3E-06 40.6 5.7 57 50-110 15-71 (416)
45 TIGR00796 livcs branched-chain 91.4 0.24 5.3E-06 41.3 3.7 43 64-106 5-48 (378)
46 PRK15132 tyrosine transporter 91.2 0.34 7.3E-06 40.7 4.4 55 55-111 4-58 (403)
47 PF03845 Spore_permease: Spore 91.0 0.3 6.6E-06 38.6 3.8 55 53-110 1-55 (320)
48 TIGR00814 stp serine transport 89.3 0.33 7.2E-06 40.5 2.8 45 59-109 8-52 (397)
49 KOG1303|consensus 87.5 2 4.4E-05 36.7 6.5 36 48-84 32-67 (437)
50 PTZ00206 amino acid transporte 85.7 3.2 7E-05 35.1 6.7 47 55-103 61-107 (467)
51 COG1115 AlsT Na+/alanine sympo 85.2 2.1 4.7E-05 37.0 5.5 57 49-109 58-114 (452)
52 PF01490 Aa_trans: Transmembra 82.8 1.3 2.8E-05 35.3 3.0 56 52-109 1-56 (409)
53 KOG1305|consensus 78.2 5.9 0.00013 33.6 5.6 59 51-111 3-61 (411)
54 KOG1304|consensus 77.7 15 0.00031 31.9 7.9 35 51-86 44-78 (449)
55 PRK13629 threonine/serine tran 76.8 4.1 9E-05 35.0 4.3 55 54-111 20-74 (443)
56 TIGR00835 agcS amino acid carr 75.3 4 8.6E-05 34.9 3.8 55 52-110 45-99 (425)
57 PF11023 DUF2614: Protein of u 73.3 8.7 0.00019 27.6 4.6 44 59-111 18-61 (114)
58 PF12666 PrgI: PrgI family pro 67.9 7.6 0.00017 25.6 3.2 32 49-80 12-43 (93)
59 COG3949 Uncharacterized membra 59.6 18 0.00038 30.5 4.5 53 59-112 8-61 (349)
60 PLN03074 auxin influx permease 51.6 48 0.001 28.4 6.0 47 53-101 45-91 (473)
61 PRK11375 allantoin permease; P 49.1 71 0.0015 27.3 6.7 60 40-100 13-73 (484)
62 PF06781 UPF0233: Uncharacteri 33.1 85 0.0018 21.3 3.8 19 82-100 63-82 (87)
63 PF04156 IncA: IncA protein; 29.0 67 0.0015 23.4 3.0 19 57-75 7-26 (191)
64 PRK00159 putative septation in 25.3 1.9E+02 0.004 19.8 4.4 18 83-100 64-82 (87)
65 COG1953 FUI1 Cytosine/uracil/t 22.0 4.2E+02 0.009 23.5 7.0 63 40-102 27-89 (497)
66 PF12597 DUF3767: Protein of u 20.9 78 0.0017 22.4 2.0 44 55-101 39-84 (118)
67 TIGR02106 cyd_oper_ybgT cyd op 20.7 1.7E+02 0.0037 16.2 3.0 14 91-104 4-17 (30)
68 PF09925 DUF2157: Predicted me 20.1 1.4E+02 0.0031 21.0 3.2 43 56-99 90-132 (145)
No 1
>KOG1287|consensus
Probab=99.50 E-value=1.2e-14 Score=123.51 Aligned_cols=70 Identities=54% Similarity=0.998 Sum_probs=66.1
Q ss_pred cccccCccCccchHHHHHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy5069 44 AEDTVCLKPKMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSELVLV 113 (113)
Q Consensus 44 ~~~~~~l~r~Lg~~~l~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~~~al~yaEL~s~ 113 (113)
..++.+++|++|++.++.+.+|++||+|||..|..+++++|+.+++++.|+++|++++.+++|||||+++
T Consensus 4 ~~~~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ 73 (479)
T KOG1287|consen 4 SGEEVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTS 73 (479)
T ss_pred CcccccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3456789999999999999999999999999999999999999999999999999999999999999974
No 2
>PRK15049 L-asparagine permease; Provisional
Probab=99.42 E-value=3.3e-13 Score=113.45 Aligned_cols=62 Identities=27% Similarity=0.426 Sum_probs=58.8
Q ss_pred CccCccchHHHHHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5069 49 CLKPKMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSELVL 112 (113)
Q Consensus 49 ~l~r~Lg~~~l~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~~~al~yaEL~s 112 (113)
++||+|+.+|++++++|++||+|+|..++.+++.+|+. .+++|+++++++++.++||+||++
T Consensus 25 ~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp~--~il~~li~~i~~~~v~~slaELas 86 (499)
T PRK15049 25 GYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGPA--LALVYLICGLFSFFILRALGELVL 86 (499)
T ss_pred hhhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCCH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999985 678999999999999999999985
No 3
>PRK10836 lysine transporter; Provisional
Probab=99.41 E-value=3e-13 Score=112.73 Aligned_cols=64 Identities=20% Similarity=0.374 Sum_probs=60.2
Q ss_pred cCccCccchHHHHHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5069 48 VCLKPKMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSELVL 112 (113)
Q Consensus 48 ~~l~r~Lg~~~l~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~~~al~yaEL~s 112 (113)
+++||+|+.+|++++++|+|||+|||++|+.+++.+||.+ ++++|+++|+++++.++||+||++
T Consensus 11 ~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~-~l~a~~i~g~~~~~~al~~aEL~s 74 (489)
T PRK10836 11 PGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGG-ALLSYMLIGLMVYFLMTSLGELAA 74 (489)
T ss_pred ccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999999999999853 789999999999999999999986
No 4
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.37 E-value=6.9e-13 Score=109.92 Aligned_cols=64 Identities=22% Similarity=0.450 Sum_probs=60.0
Q ss_pred cCccCccchHHHHHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5069 48 VCLKPKMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSELVL 112 (113)
Q Consensus 48 ~~l~r~Lg~~~l~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~~~al~yaEL~s 112 (113)
.++||+|++++++++++|++||+|||+.++.+++.+|+.+ .+++|+++++++++.++||+||++
T Consensus 10 ~~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~-~~l~~~i~~~~~~~~~~~~aELas 73 (471)
T PRK11387 10 GQFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAG-TLLAYLIGALVVYLVMQCLGELSV 73 (471)
T ss_pred hhhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999999999999865 688999999999999999999985
No 5
>PRK10249 phenylalanine transporter; Provisional
Probab=99.33 E-value=1.4e-12 Score=108.12 Aligned_cols=65 Identities=17% Similarity=0.336 Sum_probs=60.3
Q ss_pred cccCccCccchHHHHHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5069 46 DTVCLKPKMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSELVL 112 (113)
Q Consensus 46 ~~~~l~r~Lg~~~l~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~~~al~yaEL~s 112 (113)
+..+++|+|+.+|++++++|++||+|+|++++.+++.+|+. ++++|+++++++++.++||+||++
T Consensus 15 ~~~~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp~--~~l~~li~~~~~~~~~~~~aEl~~ 79 (458)
T PRK10249 15 QEPTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGPA--VLLGYGVAGIIAFLIMRQLGEMVV 79 (458)
T ss_pred CchhhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCcH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33479999999999999999999999999999999988984 789999999999999999999985
No 6
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.31 E-value=7.3e-12 Score=104.39 Aligned_cols=67 Identities=60% Similarity=1.063 Sum_probs=62.3
Q ss_pred cccCccCccchHHHHHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5069 46 DTVCLKPKMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSELVL 112 (113)
Q Consensus 46 ~~~~l~r~Lg~~~l~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~~~al~yaEL~s 112 (113)
++.+++|++++++++++++|++||+|||.+++.++..+|++++.+++|+++++++++.++||+||++
T Consensus 36 ~~~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas 102 (501)
T TIGR00911 36 EAVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGT 102 (501)
T ss_pred cccccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4457999999999999999999999999999999998998777788999999999999999999986
No 7
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.28 E-value=7.1e-12 Score=102.79 Aligned_cols=65 Identities=31% Similarity=0.497 Sum_probs=60.7
Q ss_pred cCccCccchHHHHHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5069 48 VCLKPKMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSELVL 112 (113)
Q Consensus 48 ~~l~r~Lg~~~l~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~~~al~yaEL~s 112 (113)
.+|+|++++++++++++|.+||+|+|.+++.++..+|+++..+++|+++++++++.++||+||++
T Consensus 4 ~~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s 68 (445)
T PRK11357 4 QELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELST 68 (445)
T ss_pred ccccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46999999999999999999999999999998888887766889999999999999999999986
No 8
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.24 E-value=8.3e-12 Score=102.56 Aligned_cols=64 Identities=17% Similarity=0.373 Sum_probs=59.8
Q ss_pred ccCccCccchHHHHHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5069 47 TVCLKPKMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSELVL 112 (113)
Q Consensus 47 ~~~l~r~Lg~~~l~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~~~al~yaEL~s 112 (113)
+.++||+|+.+|++++++|++||+|+|.+|+..++.+|+. ++++|+++++++++.++||+||++
T Consensus 7 ~~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~--~~i~~~i~~v~~~~~a~~~aEl~s 70 (452)
T TIGR01773 7 GLKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPA--ALLAYLLAGLLVVFIMRMLGEMAV 70 (452)
T ss_pred hHhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4579999999999999999999999999999999999974 678999999999999999999985
No 9
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.23 E-value=1.2e-11 Score=105.67 Aligned_cols=63 Identities=27% Similarity=0.545 Sum_probs=57.3
Q ss_pred cCccCccchHHHHHHHhcceeecccccccHHHHH-hhCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5069 48 VCLKPKMTLLNGITVIVGSIIGSGIFVSPTGVLK-ETGSVNLALVVWTISGVFSMVGAYCYSELVL 112 (113)
Q Consensus 48 ~~l~r~Lg~~~l~~l~vG~~IGsGIF~~pg~i~~-~aG~~g~allaWlv~gl~~~~~al~yaEL~s 112 (113)
.+|+|+|+++|++++++|.|||+|||++++.++. .+|+. .+++|+++|+.+++.++||+||++
T Consensus 24 ~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~--~~ls~liagv~~l~~al~yaElas 87 (557)
T TIGR00906 24 SKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA--IVLSFLISGLAAVLSGFCYAEFGA 87 (557)
T ss_pred cchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999998765 46764 788999999999999999999985
No 10
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.23 E-value=1.2e-11 Score=102.42 Aligned_cols=63 Identities=21% Similarity=0.401 Sum_probs=59.3
Q ss_pred cCccCccchHHHHHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5069 48 VCLKPKMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSELVL 112 (113)
Q Consensus 48 ~~l~r~Lg~~~l~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~~~al~yaEL~s 112 (113)
.++||+|+.+|++++++|++||+|+|..++.+++.+|+ . .+++|+++++++++.++|++||++
T Consensus 8 ~~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~-~i~~~~i~gi~~~~v~~s~aEl~s 70 (456)
T PRK10238 8 EQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-G-IILGYAIAGFIAFLIMRQLGEMVV 70 (456)
T ss_pred hhhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-H-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999999999999999999887 3 789999999999999999999975
No 11
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.22 E-value=1.1e-11 Score=102.28 Aligned_cols=64 Identities=23% Similarity=0.366 Sum_probs=59.7
Q ss_pred ccCccCccchHHHHHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5069 47 TVCLKPKMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSELVL 112 (113)
Q Consensus 47 ~~~l~r~Lg~~~l~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~~~al~yaEL~s 112 (113)
++++||+|+.+|++++++|.+||+|+|+.++..++.+|+. ++++|+++++++++.++||+||++
T Consensus 4 ~~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~~--~~l~~~i~~i~~~~~a~~~aEl~s 67 (457)
T PRK10580 4 KNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPS--VLLAYIIGGVAAYIIMRALGEMSV 67 (457)
T ss_pred CccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4579999999999999999999999999999999888874 689999999999999999999985
No 12
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.20 E-value=1.4e-11 Score=102.35 Aligned_cols=63 Identities=22% Similarity=0.389 Sum_probs=58.9
Q ss_pred cCccCccchHHHHHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5069 48 VCLKPKMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSELVL 112 (113)
Q Consensus 48 ~~l~r~Lg~~~l~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~~~al~yaEL~s 112 (113)
.++||+|++++++++.+|++||+|+|..++.+++.+|+. .+++|+++++++++.++|++||++
T Consensus 16 ~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp~--~i~~~~i~~i~~~~~~~s~aEl~s 78 (469)
T PRK11049 16 QSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGPS--IIFVYMIIGFMLFFVMRAMGELLL 78 (469)
T ss_pred hhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCcH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 359999999999999999999999999999999998883 689999999999999999999974
No 13
>KOG1286|consensus
Probab=99.19 E-value=1.1e-11 Score=107.05 Aligned_cols=66 Identities=24% Similarity=0.493 Sum_probs=61.7
Q ss_pred cccCccCccchHHHHHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5069 46 DTVCLKPKMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSELVL 112 (113)
Q Consensus 46 ~~~~l~r~Lg~~~l~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~~~al~yaEL~s 112 (113)
++.++||+|+.+|+++|++|++||+|+|+..+.++...||+. .+++|+++|+.+++.++||+|++.
T Consensus 24 ~~~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s-~iisf~i~g~~~~~~~~~~~E~~~ 89 (554)
T KOG1286|consen 24 GETELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPS-LLISFIIAGIAALLSALCLGEFAV 89 (554)
T ss_pred ccchhhccCCcccEEEEEecceeccceEEeccHHHhccCChh-HHHHHHHHHHHHHHHHHHHHHHhe
Confidence 336899999999999999999999999999999999999875 788999999999999999999985
No 14
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.19 E-value=1.7e-11 Score=100.69 Aligned_cols=61 Identities=33% Similarity=0.520 Sum_probs=55.6
Q ss_pred CccCccchHHHHHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5069 49 CLKPKMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSELVL 112 (113)
Q Consensus 49 ~l~r~Lg~~~l~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~~~al~yaEL~s 112 (113)
+.+|+|++++++++++|.|||+|||.+|+.+. .+|+. ++++|+++++.+++.++||+||++
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a-~~G~~--~i~~wli~~~~~l~~al~~aEL~s 62 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLA-SIGSI--AIWGWIISIIGAMSLAYVYARLAT 62 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHH-HhHHH--HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56789999999999999999999999999865 56764 789999999999999999999986
No 15
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.18 E-value=2.4e-11 Score=99.87 Aligned_cols=63 Identities=21% Similarity=0.424 Sum_probs=56.1
Q ss_pred cCccCccchHHHHHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy5069 48 VCLKPKMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSELVLV 113 (113)
Q Consensus 48 ~~l~r~Lg~~~l~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~~~al~yaEL~s~ 113 (113)
.+++|+||+++++++++|.|||+|||..|+.+++. |+ .++++|+++++.+++.++||+||++.
T Consensus 4 ~~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~-g~--~~~~~~~i~~~~~l~~al~~aEL~s~ 66 (445)
T PRK10644 4 DADAHKVGLIPVTLMVAGNIMGSGVFLLPANLAST-GG--IAIYGWLVTIIGALGLSMVYAKMSSL 66 (445)
T ss_pred CccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHH-HH--HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46889999999999999999999999999987654 54 37899999999999999999999863
No 16
>PRK10746 putative transport protein YifK; Provisional
Probab=99.18 E-value=2.2e-11 Score=101.36 Aligned_cols=63 Identities=22% Similarity=0.394 Sum_probs=59.3
Q ss_pred cCccCccchHHHHHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5069 48 VCLKPKMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSELVL 112 (113)
Q Consensus 48 ~~l~r~Lg~~~l~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~~~al~yaEL~s 112 (113)
+++||+|+.+|+.++++|++||+|+|+.++..++.+|+. ++++|+++|+++++.++|++||++
T Consensus 6 ~~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp~--~~l~~~i~g~~~~~v~~~~aEl~~ 68 (461)
T PRK10746 6 PELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGPS--VLLAYIIAGLFVFFIMRSMGEMLF 68 (461)
T ss_pred hHHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcChH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 369999999999999999999999999999999999983 789999999999999999999985
No 17
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.15 E-value=6e-11 Score=97.96 Aligned_cols=61 Identities=20% Similarity=0.310 Sum_probs=57.1
Q ss_pred cCccchHHHHHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5069 51 KPKMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSELVL 112 (113)
Q Consensus 51 ~r~Lg~~~l~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~~~al~yaEL~s 112 (113)
||+|+.+|++++++|++||+|+|.+++..++.+|+.+ .+++|+++++++++.++||+||++
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~-~i~~~~i~~~~~~~~a~~~aEl~s 61 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAG-LLIGYAIMGSIIYCVMQSLGEMAT 61 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999999999988753 688999999999999999999986
No 18
>PRK10655 potE putrescine transporter; Provisional
Probab=99.15 E-value=4.4e-11 Score=97.79 Aligned_cols=61 Identities=25% Similarity=0.483 Sum_probs=54.9
Q ss_pred CccCccchHHHHHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5069 49 CLKPKMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSELVL 112 (113)
Q Consensus 49 ~l~r~Lg~~~l~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~~~al~yaEL~s 112 (113)
+++|+|++++++++++|+|||+|||.+|+.+. .+|+. ++++|+++++++++.++||+||++
T Consensus 3 ~~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~-~~G~~--~~~~w~i~~~~~~~~a~~~aeL~~ 63 (438)
T PRK10655 3 AKSNKMGVVQLTILTAVNMMGSGIIMLPTKLA-QVGTI--SILSWLVTAVGSMALAYAFAKCGM 63 (438)
T ss_pred CccCcccHHHHHHHHHHhhhhhHHHHhHHHHH-HhhHH--HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 36789999999999999999999999998855 56763 788999999999999999999985
No 19
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.09 E-value=1.1e-10 Score=96.84 Aligned_cols=60 Identities=32% Similarity=0.515 Sum_probs=55.6
Q ss_pred CccchHHHHHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5069 52 PKMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSELVL 112 (113)
Q Consensus 52 r~Lg~~~l~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~~~al~yaEL~s 112 (113)
|++|+++++++++|+|||+|||.+|+.+++.+|+. ..+++|+++++++++.++||+||++
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~-~~l~~w~i~~~~~~~~al~~aeL~s 60 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAG-AVLIGWVITGVGMLALAFSFQNLAN 60 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999888864 4788999999999999999999986
No 20
>PRK11021 putative transporter; Provisional
Probab=99.09 E-value=1.1e-10 Score=94.97 Aligned_cols=57 Identities=23% Similarity=0.417 Sum_probs=53.9
Q ss_pred cchHHHHHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5069 54 MTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSELVL 112 (113)
Q Consensus 54 Lg~~~l~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~~~al~yaEL~s 112 (113)
+|+++.+++++|+|||+|||.+|+.+++.+|+. ++++|+++++++++.++||+||++
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~~--~~~~~~i~~~~~~~~al~~aEl~s 57 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAALVAGNN--SLWAWPLLILLIFPIAIVFARLGR 57 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHHHhcCch--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999974 789999999999999999999986
No 21
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.08 E-value=1.4e-10 Score=96.34 Aligned_cols=62 Identities=29% Similarity=0.525 Sum_probs=56.0
Q ss_pred ccCccchHHHHHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5069 50 LKPKMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSELVL 112 (113)
Q Consensus 50 l~r~Lg~~~l~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~~~al~yaEL~s 112 (113)
++|++++++++++++|.+||+|||..|+.+.+.+|+. ..+++|+++++++++.++||+||++
T Consensus 5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~-~~~~~wli~~~~~~~~al~~aEl~s 66 (473)
T TIGR00905 5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPG-AVIIGWIITGVGMLALAFVFAILAT 66 (473)
T ss_pred cCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999987766553 4788999999999999999999985
No 22
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=99.07 E-value=2.6e-10 Score=98.38 Aligned_cols=63 Identities=24% Similarity=0.413 Sum_probs=60.7
Q ss_pred CccCccchHHHHHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5069 49 CLKPKMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSELVL 112 (113)
Q Consensus 49 ~l~r~Lg~~~l~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~~~al~yaEL~s 112 (113)
+|||+|..+|+.+|.+|+.||+|.|+..+..++++||.+ .+++|++.|+++.+.++|..||++
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g-~li~y~i~G~~vy~vm~sLGEma~ 103 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAG-LLIAYLIIGIMVYFVMQSLGELAV 103 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhhccCcHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 699999999999999999999999999999999999986 789999999999999999999986
No 23
>TIGR00909 2A0306 amino acid transporter.
Probab=98.82 E-value=6.2e-09 Score=84.52 Aligned_cols=61 Identities=25% Similarity=0.478 Sum_probs=56.1
Q ss_pred ccCccchHHHHHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5069 50 LKPKMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSELVL 112 (113)
Q Consensus 50 l~r~Lg~~~l~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~~~al~yaEL~s 112 (113)
+||++++++++++.++.+||+|+|..++.+....|+. .+++|+++++++++.++||+|+++
T Consensus 1 l~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~--~~l~~li~~~~~~~~a~~~~el~~ 61 (429)
T TIGR00909 1 LSRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPA--VILSFVLAGLTALFIALVYAELAA 61 (429)
T ss_pred CCccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCCH--HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999999999999999999999988777764 678999999999999999999975
No 24
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=98.76 E-value=1.2e-08 Score=83.49 Aligned_cols=64 Identities=17% Similarity=0.111 Sum_probs=56.5
Q ss_pred ccCccCccchHHHHHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5069 47 TVCLKPKMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSELVL 112 (113)
Q Consensus 47 ~~~l~r~Lg~~~l~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~~~al~yaEL~s 112 (113)
+.++||++++++++++.+|.+|| |+|...+..++.+|+.+ .+++|++++++.++.++||+||++
T Consensus 2 ~~~l~r~l~~~~~~~l~~~~~ig-g~~~~~~~~~~~~G~~~-~~~~~~i~~~~~~~~a~~~aEl~s 65 (442)
T TIGR00908 2 HRQLKKTLATWQLWGIGVGYVIS-GDYAGWNFGLAQGGWGG-FVVATLLVATMYLTFCFSLAELST 65 (442)
T ss_pred CchhhccCCHHHHHHhHHHHHhh-ccchhHhhHHHHhCcHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45699999999999999999998 88888777777778753 678999999999999999999985
No 25
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=98.74 E-value=8.1e-09 Score=85.83 Aligned_cols=64 Identities=17% Similarity=0.089 Sum_probs=59.2
Q ss_pred ccCccCccchHHHHHHHhcce-eecccccccHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5069 47 TVCLKPKMTLLNGITVIVGSI-IGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSELVL 112 (113)
Q Consensus 47 ~~~l~r~Lg~~~l~~l~vG~~-IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~~~al~yaEL~s 112 (113)
+++|||++++++.+++.++.+ +++|+|.+++..+..+|+. .+++|+++++.+++.++||+||++
T Consensus 8 ~~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp~--~~~~~li~~i~~l~~als~aEL~s 72 (475)
T TIGR03428 8 QPQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGPA--FFWTWPVVFVGQLLVALNFAELAA 72 (475)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcH--HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 347999999999999999986 9999999999999988883 789999999999999999999986
No 26
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=98.68 E-value=8.4e-09 Score=85.37 Aligned_cols=49 Identities=18% Similarity=0.478 Sum_probs=45.8
Q ss_pred HHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5069 62 VIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSELVL 112 (113)
Q Consensus 62 l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~~~al~yaEL~s 112 (113)
+++|++||+|+|++++..++.+|+. ++++|+++|+++++.++||+||++
T Consensus 2 ~~ig~~IGsGif~~~g~~~~~aG~~--~ll~~~i~gi~~~~~al~~aEL~s 50 (446)
T PRK10197 2 LSIAGVIGASLFVGSSVAIAEAGPA--VLLAYLFAGLLVVMIMRMLAEMAV 50 (446)
T ss_pred eeecchhHhHHHHHhHHHHHhcChH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999973 789999999999999999999986
No 27
>TIGR00930 2a30 K-Cl cotransporter.
Probab=98.67 E-value=3e-08 Score=90.26 Aligned_cols=63 Identities=16% Similarity=0.216 Sum_probs=57.9
Q ss_pred CccCccchHHHHHHH-hcceeecccccccHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5069 49 CLKPKMTLLNGITVI-VGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSELVL 112 (113)
Q Consensus 49 ~l~r~Lg~~~l~~l~-vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~~~al~yaEL~s 112 (113)
.-++++|++..+++- +++|+|+|||+.++.++..+|.. .+++.|+++++++++.++||+||++
T Consensus 73 ~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~-~sll~~~la~~vtlltaLS~seiaT 136 (953)
T TIGR00930 73 AGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIG-LSLLIILLCCCVTTITGLSMSAIAT 136 (953)
T ss_pred CCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345789999999999 99999999999999999999954 5889999999999999999999986
No 28
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=98.59 E-value=3.5e-08 Score=81.81 Aligned_cols=65 Identities=22% Similarity=0.175 Sum_probs=56.3
Q ss_pred ccCccCccchHHHHHHHhcce-eecccccccHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5069 47 TVCLKPKMTLLNGITVIVGSI-IGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSELVL 112 (113)
Q Consensus 47 ~~~l~r~Lg~~~l~~l~vG~~-IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~~~al~yaEL~s 112 (113)
+++|||++++++.+++.++.+ +.+|+|...+..++.+|+.+ .+++|++++++.++.++||+||++
T Consensus 7 ~~~l~r~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~Gp~~-~i~~~~i~gi~~l~~~~~~aEl~s 72 (482)
T TIGR00907 7 KPELKREFSLWSIFGFAFSISNSWTGISTTYNYGLSSGGAMS-IVWGWIIAGAGSICIALSLAELSS 72 (482)
T ss_pred cceeecccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc-hhHHHHHHHHHHHHHHHHHHHHHh
Confidence 446999999999999999954 23899999888787788853 688999999999999999999986
No 29
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=98.45 E-value=2.2e-07 Score=79.18 Aligned_cols=63 Identities=21% Similarity=0.409 Sum_probs=59.0
Q ss_pred ccCccCccchHHHHHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy5069 47 TVCLKPKMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSELV 111 (113)
Q Consensus 47 ~~~l~r~Lg~~~l~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~~~al~yaEL~ 111 (113)
+.+|+|.|+.+|..+|++|+.||+|.|...+..++.+||- .+++|+++|++++++.-+..||.
T Consensus 8 ~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPS--vlLaY~I~G~~~f~iMRaLGEm~ 70 (462)
T COG1113 8 EQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPS--VLLAYLIAGIFVFLIMRALGEML 70 (462)
T ss_pred chhhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3469999999999999999999999999999999999995 78999999999999999999985
No 30
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=98.32 E-value=1.1e-06 Score=70.93 Aligned_cols=65 Identities=34% Similarity=0.505 Sum_probs=55.6
Q ss_pred ccccCccCccchHH-HHHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5069 45 EDTVCLKPKMTLLN-GITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSELVL 112 (113)
Q Consensus 45 ~~~~~l~r~Lg~~~-l~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~~~al~yaEL~s 112 (113)
.++.+++|+++.++ +..+.++.++|.|+|..++..+... + ..+++|++++++.++.+++|+|+++
T Consensus 5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~--~~~~~~li~~~~~~~~a~~~~el~~ 70 (466)
T COG0531 5 MMSSELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-P--AAILAWLIAGIIILFLALSYAELSS 70 (466)
T ss_pred ccchhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-h--HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34457889999999 9999999999999999999987665 2 2455699999999999999999986
No 31
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=98.12 E-value=3.5e-06 Score=68.01 Aligned_cols=55 Identities=38% Similarity=0.726 Sum_probs=47.4
Q ss_pred cchHHHHHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHHH-HHHHHHHHHhhc
Q psy5069 54 MTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFS-MVGAYCYSELVL 112 (113)
Q Consensus 54 Lg~~~l~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~-~~~al~yaEL~s 112 (113)
|++++++++++|.++|+|+|..+ .+...|+. ++++|++++++. ++.+++|+|+++
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~--~~~~~G~~--~~~~~~i~~~~~~l~~a~~~~el~~ 56 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP--AAASAGPS--AILAWIIAALLFFLPIALSYAELSS 56 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH--HHTCTGCH--HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH--HHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 68999999999999999999988 45556664 788999999998 899999999986
No 32
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=98.04 E-value=4.2e-06 Score=66.79 Aligned_cols=58 Identities=19% Similarity=0.292 Sum_probs=52.8
Q ss_pred ccchHHHHHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5069 53 KMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSELVL 112 (113)
Q Consensus 53 ~Lg~~~l~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~~~al~yaEL~s 112 (113)
+++.++.+++.++.+||+|+|..|+.+++.+|.. +.++|+++++++++.+++|+|++.
T Consensus 2 ~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~--~wi~~ll~~~~~~~~~~~~~~l~~ 59 (359)
T TIGR00912 2 KISSKQLIFLISSTMIGSGLLTLPALVSQSAGQD--GWISIILGGLIIIFLLCLMIKIMS 59 (359)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCC--eeHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999988888864 557999999999999999999974
No 33
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=97.90 E-value=2.1e-05 Score=65.93 Aligned_cols=60 Identities=22% Similarity=0.209 Sum_probs=45.7
Q ss_pred CccCccchHHHHHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHH-HHHHHHHHHHhhcC
Q psy5069 49 CLKPKMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVF-SMVGAYCYSELVLV 113 (113)
Q Consensus 49 ~l~r~Lg~~~l~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~-~~~~al~yaEL~s~ 113 (113)
+++|+|+++++++++++++||.+.. | ..++..|+. +++.|++++++ .++.++||+||++.
T Consensus 4 ~~~~~l~~~~l~~~~~~~vig~~~~--~-~~~~~~G~~--~i~~~~i~~~~~~l~~al~~aEL~s~ 64 (496)
T PRK15238 4 NTKKKLSLIGLILMIFTSVFGFANS--P-RAFYLMGYS--AIPWYILSAILFFIPFALMMAEYGSA 64 (496)
T ss_pred cccCeeeHHHHHHHHHHHHHhCCch--H-HHHHHcChH--HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4578999999999999999997632 3 234456664 66677777766 57899999999863
No 34
>PHA02764 hypothetical protein; Provisional
Probab=97.59 E-value=0.00013 Score=60.80 Aligned_cols=65 Identities=17% Similarity=0.102 Sum_probs=48.0
Q ss_pred cccCccCccchHHHHHHHhccee-ecccccccHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5069 46 DTVCLKPKMTLLNGITVIVGSII-GSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSELVL 112 (113)
Q Consensus 46 ~~~~l~r~Lg~~~l~~l~vG~~I-GsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~~~al~yaEL~s 112 (113)
+..+|-|+.+.+|.++..++.|- |.++ .-+ .......+....+++|+++|+++++.++||+||++
T Consensus 6 eSSGLVREvs~lDAF~~Nl~~m~~Gi~I-s~~-~l~a~l~pG~nlLLAWLLGGLlALPgAL~YAELGS 71 (399)
T PHA02764 6 KSSGIIKSFNILDIFSINLLYMGILSGI-SYP-LFVSSLLKNVNLLFAILIGAVFEIPLLLMYYKLTT 71 (399)
T ss_pred hcCCceeeccHHHHHHHHHHhhccchhH-HHH-HHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44689999999999999998884 3322 112 22223333334789999999999999999999986
No 35
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=97.50 E-value=3.2e-05 Score=62.21 Aligned_cols=51 Identities=20% Similarity=0.258 Sum_probs=41.3
Q ss_pred HHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5069 60 ITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSELVL 112 (113)
Q Consensus 60 ~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~~~al~yaEL~s 112 (113)
+++++|.+||+|||.+|...+...+.+ +++..+++++++...++||+|++.
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a~~g~~~--~~~~~i~~~~~~~~~~l~~~el~~ 53 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTAGAWFIW--TLLLLILLWFLMLHSGLLLLEVYL 53 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHHhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999966543333 556678889999999999999964
No 36
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=97.46 E-value=1.8e-05 Score=65.64 Aligned_cols=54 Identities=22% Similarity=0.454 Sum_probs=47.9
Q ss_pred HHHHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5069 58 NGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSELVL 112 (113)
Q Consensus 58 ~l~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~~~al~yaEL~s 112 (113)
|++++.+|+++|+|+|...+..+..+|+.+ .+++|+++++++++.++||+||++
T Consensus 1 hv~~~~ig~~ig~g~f~~~g~~~~~~G~~~-~~la~li~~i~~~~~~~~~~ems~ 54 (478)
T PF00324_consen 1 HVFMISIGGIIGTGLFLGSGFAIAAAGPGG-APLAYLIAGIIVLLVALSLAEMSR 54 (478)
T ss_pred CEEEeeHHHHHHHHHHHHHHHHHHhccccc-chhHhHHHHHHHHhhhhhhhhhhh
Confidence 345678999999999999999999888854 578999999999999999999975
No 37
>KOG1289|consensus
Probab=97.37 E-value=0.00018 Score=62.80 Aligned_cols=65 Identities=25% Similarity=0.286 Sum_probs=50.7
Q ss_pred ccCccCccchHHHHHHHhcce-eecccccccHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5069 47 TVCLKPKMTLLNGITVIVGSI-IGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSELVL 112 (113)
Q Consensus 47 ~~~l~r~Lg~~~l~~l~vG~~-IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~~~al~yaEL~s 112 (113)
|+++||.++++..+.+.++.| .=.||-.+=..-+...|++. .+++|+++++..++++++.+|+++
T Consensus 43 kqef~R~fs~~s~fg~sFs~~g~~~~i~tsm~~gl~~gG~~~-~vwgwlIa~~~~i~va~slaEl~S 108 (550)
T KOG1289|consen 43 KQELKREFSLFSIFGISFSLMGLLPGIATSMAYGLGSGGPPT-LVWGWLIAGFFSICVALSLAELCS 108 (550)
T ss_pred chhhhhhhhHHHHHHHHHHHhcchhhhhhheeeccccCChHH-HHHHHHHHHHHHHHHHhHHHHHHh
Confidence 568999999999999998876 33444444333344456664 789999999999999999999986
No 38
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=96.57 E-value=0.0037 Score=52.05 Aligned_cols=56 Identities=16% Similarity=0.211 Sum_probs=42.1
Q ss_pred CccchHHHHHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHHH-HHHHHHHHHhhcC
Q psy5069 52 PKMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFS-MVGAYCYSELVLV 113 (113)
Q Consensus 52 r~Lg~~~l~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~-~~~al~yaEL~s~ 113 (113)
|||++++++++.+..+++-... |. .+..|+. +++.|++++++. ++.++||+||++.
T Consensus 1 ~~~~~~~l~~~~~~~v~~~~~~--~~--~a~~G~~--~~~~~~i~~~~~~ip~al~~aEL~~~ 57 (474)
T TIGR03813 1 KKLTVVTLAIMNITAVVSLRGL--PA--EAEYGLS--AAFYYLFAAIFFLVPVSLVAAELATA 57 (474)
T ss_pred CcccHHHHHHHHHHHHHHhhcc--hH--HHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4699999999998887754332 32 2346753 788999999976 4799999999863
No 39
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=96.15 E-value=0.0072 Score=51.34 Aligned_cols=56 Identities=16% Similarity=0.376 Sum_probs=39.9
Q ss_pred cCccchHHHHHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHH-HHHHHHHHHHhhc
Q psy5069 51 KPKMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVF-SMVGAYCYSELVL 112 (113)
Q Consensus 51 ~r~Lg~~~l~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~-~~~~al~yaEL~s 112 (113)
+|+|++++++++.++.++ +++..|. .+..|.- ++.-|++++++ .++.++||+||++
T Consensus 3 ~~~l~~~~~~~~~~~~v~--~~~~~~~--~a~~G~~--~i~~~i~~~l~~~lp~al~~AELas 59 (507)
T TIGR00910 3 AKKLSLFGFFAITASMVL--AVYEYPT--FATSGFH--LVFFLLLGGILWFIPVALCAAEMAT 59 (507)
T ss_pred CcEeeHHHHHHHHHHHHH--HHHhhHH--HHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 577999999999998886 5665553 3344531 34445666665 4779999999986
No 40
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=95.53 E-value=0.024 Score=47.08 Aligned_cols=58 Identities=21% Similarity=0.408 Sum_probs=46.2
Q ss_pred CccchHHHHHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy5069 52 PKMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSELV 111 (113)
Q Consensus 52 r~Lg~~~l~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~~~al~yaEL~ 111 (113)
|+-+.+..+++++|..||+|++.+|-.. +..|-. .+++..+++..++....+.++|+.
T Consensus 1 ~~~~~~~~~~li~GTaIGAGmLaLP~~~-~~~Gf~-~~~~~l~~~w~~~~~s~l~~~E~~ 58 (394)
T PF03222_consen 1 KNNSILGGVLLIAGTAIGAGMLALPIAT-AGAGFL-PSLILLLIAWPLMYYSGLLLAEVS 58 (394)
T ss_pred CCchHHHHHHHHHHccHhHHHHHHHHHH-HhCchH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457889999999999999999998773 445643 366677777788888999999975
No 41
>PRK10483 tryptophan permease; Provisional
Probab=95.03 E-value=0.042 Score=46.49 Aligned_cols=61 Identities=20% Similarity=0.300 Sum_probs=49.5
Q ss_pred CccCccchHHHHHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy5069 49 CLKPKMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSELV 111 (113)
Q Consensus 49 ~l~r~Lg~~~l~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~~~al~yaEL~ 111 (113)
..|++.+.+..++++.|.+||+|++.+|-. .+..|-. .+++..+++-+++...++++.|..
T Consensus 6 ~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~-~a~~GF~-~s~~~l~~~W~~M~~taLlllEv~ 66 (414)
T PRK10483 6 TTQTSPSLLGGVVIIGGTIIGAGMFSLPVV-MSGAWFF-WSMAALIFTWFCMLHSGLMILEAN 66 (414)
T ss_pred cccCCCcHHHHHHHHHHchHhHHHHHHHHH-HHhccHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999999876 4445643 366777778888999999999974
No 42
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=94.91 E-value=0.063 Score=44.90 Aligned_cols=61 Identities=20% Similarity=0.358 Sum_probs=49.1
Q ss_pred CccCccchHHHHHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy5069 49 CLKPKMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSELV 111 (113)
Q Consensus 49 ~l~r~Lg~~~l~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~~~al~yaEL~ 111 (113)
..+++.+.+..+++.+|.+||+|++..|-. .+..|- +..++..++++.++....++++|..
T Consensus 4 ~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a-~~~~G~-~~~l~~l~i~~~~t~~s~~~l~~~~ 64 (415)
T COG0814 4 SMKKTSSDLGGVLILAGTAIGAGVLFLPVA-FGGGGF-WPGLLLLIIAWPLTYLSLLLLLEAL 64 (415)
T ss_pred cccCCcchHHHHHHHHccccccchhhhhHH-hcCCcH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667889999999999999999999866 444443 3467788889999999999999864
No 43
>PRK09664 tryptophan permease TnaB; Provisional
Probab=94.27 E-value=0.065 Score=45.44 Aligned_cols=55 Identities=22% Similarity=0.315 Sum_probs=44.4
Q ss_pred chHHHHHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy5069 55 TLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSELV 111 (113)
Q Consensus 55 g~~~l~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~~~al~yaEL~ 111 (113)
+.+..++++.|.+||+|.+.+|-. .+.+|-. .+++..++.-+++...++++.|..
T Consensus 10 ~~~gg~~iIaGT~IGAGMLaLP~~-~a~~Gf~-~s~~ll~~~w~~M~~t~LlllEv~ 64 (415)
T PRK09664 10 SAFWGVMVIAGTVIGGGMFALPVD-LAGAWFF-WGAFILIIAWFSMLHSGLLLLEAN 64 (415)
T ss_pred chhhhhHHhhhccHhHHHHHHHHH-HhcccHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677799999999999999999876 4445643 366677778888999999999974
No 44
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=91.82 E-value=0.43 Score=40.64 Aligned_cols=57 Identities=14% Similarity=0.330 Sum_probs=42.8
Q ss_pred ccCccchHHHHHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5069 50 LKPKMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSEL 110 (113)
Q Consensus 50 l~r~Lg~~~l~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~~~al~yaEL 110 (113)
-++.++.++.++..+++.||.|-......++.. |+||...|-|+.+ ++.+ +..|+|.
T Consensus 15 ~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~-GGPGAiFWMWi~a-~~Gm--atk~~E~ 71 (416)
T PF01235_consen 15 EEGGISPFQALCTALAGTVGTGNIAGVATAIAI-GGPGAIFWMWISA-LLGM--ATKYAEV 71 (416)
T ss_pred CCCCcChHHHHHHHHHhccCcchHHHHHHHHHh-hchhHHHHHHHHH-HHHH--HHHHHHH
Confidence 345799999999999999999999888876654 5556678888855 3333 4456663
No 45
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=91.35 E-value=0.24 Score=41.33 Aligned_cols=43 Identities=16% Similarity=0.132 Sum_probs=36.9
Q ss_pred hcceeecccccccHHHHHhhCch-HHHHHHHHHHHHHHHHHHHH
Q psy5069 64 VGSIIGSGIFVSPTGVLKETGSV-NLALVVWTISGVFSMVGAYC 106 (113)
Q Consensus 64 vG~~IGsGIF~~pg~i~~~aG~~-g~allaWlv~gl~~~~~al~ 106 (113)
++.-+|+|.|+.|..+..++|+. +.++++|+++|+...+.+++
T Consensus 5 FamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~ 48 (378)
T TIGR00796 5 FALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI 48 (378)
T ss_pred HHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh
Confidence 44558999999999999999965 77899999999998887765
No 46
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=91.16 E-value=0.34 Score=40.75 Aligned_cols=55 Identities=20% Similarity=0.294 Sum_probs=41.8
Q ss_pred chHHHHHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy5069 55 TLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSELV 111 (113)
Q Consensus 55 g~~~l~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~~~al~yaEL~ 111 (113)
+.+..+++.+|..||+|++.+|-... ..|-+ .+++.-+++..++...++.++|..
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~-~~Gf~-~~~~~li~~w~~m~~t~l~l~Ev~ 58 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAA-GVGFS-VTLILLIGLWALMCYTALLLLEVY 58 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHH-hChHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999987744 45644 355556666666888888899853
No 47
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=91.03 E-value=0.3 Score=38.58 Aligned_cols=55 Identities=22% Similarity=0.348 Sum_probs=42.6
Q ss_pred ccchHHHHHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5069 53 KMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSEL 110 (113)
Q Consensus 53 ~Lg~~~l~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~~~al~yaEL 110 (113)
+++..+...+.+..++|+|++..|+..++.+|+.+ ++-++++++.+..++.+..+
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~d~W---i~~ll~~~~~l~~~~l~~~l 55 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQAGDAW---ISVLLGGLIGLLLALLIYYL 55 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcH---HHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999988886543 34456666666666665544
No 48
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=89.31 E-value=0.33 Score=40.53 Aligned_cols=45 Identities=20% Similarity=0.303 Sum_probs=31.9
Q ss_pred HHHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy5069 59 GITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSE 109 (113)
Q Consensus 59 l~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~~~al~yaE 109 (113)
-+.+.+|.+||+|++++|... |.. ..++|+++++++++.++.++.
T Consensus 8 w~~~l~gt~IGaGiL~LP~~a----g~~--G~i~~li~~l~~~pl~~~~~~ 52 (397)
T TIGR00814 8 WMLGLYGTAIGAGVLFLPIQA----GLG--GLWVLVLMAIIAYPLTYFGHR 52 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HhC--HHHHHHHHHHHHHHHHHHHHH
Confidence 456778999999999999872 322 345777777777776665544
No 49
>KOG1303|consensus
Probab=87.54 E-value=2 Score=36.68 Aligned_cols=36 Identities=19% Similarity=0.346 Sum_probs=30.4
Q ss_pred cCccCccchHHHHHHHhcceeecccccccHHHHHhhC
Q psy5069 48 VCLKPKMTLLNGITVIVGSIIGSGIFVSPTGVLKETG 84 (113)
Q Consensus 48 ~~l~r~Lg~~~l~~l~vG~~IGsGIF~~pg~i~~~aG 84 (113)
...+|..++++..+..++.++|.|+..+| .++++.|
T Consensus 32 ~~~~~~~s~~~a~~~~i~~~~G~gvLsLP-~A~~~lG 67 (437)
T KOG1303|consen 32 ITPSRGGSWWQAAFHIINALIGAGVLSLP-YALAQLG 67 (437)
T ss_pred cccCCCCcceehhhheehhhhhhhhhhhH-HHHHhCc
Confidence 34567799999999999999999999998 5566666
No 50
>PTZ00206 amino acid transporter; Provisional
Probab=85.66 E-value=3.2 Score=35.06 Aligned_cols=47 Identities=21% Similarity=0.373 Sum_probs=31.1
Q ss_pred chHHHHHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHHHHHH
Q psy5069 55 TLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVG 103 (113)
Q Consensus 55 g~~~l~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~~~ 103 (113)
|....++-.+..+||+||+..|.. .+..|-. ..++.-++.++++...
T Consensus 61 g~~~s~fnL~~~~iGaGILsLP~A-f~~~G~v-~giillil~a~ls~ys 107 (467)
T PTZ00206 61 GIAASAFNIASSTVGAGIVGLPSA-ANSSGLV-MAMIYLIIITAMTIFS 107 (467)
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHH-HHHhhHH-HHHHHHHHHHHHHHHH
Confidence 557788888999999999999877 4456643 2344444444444433
No 51
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=85.23 E-value=2.1 Score=37.01 Aligned_cols=57 Identities=14% Similarity=0.278 Sum_probs=42.9
Q ss_pred CccCccchHHHHHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy5069 49 CLKPKMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSE 109 (113)
Q Consensus 49 ~l~r~Lg~~~l~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~~~al~yaE 109 (113)
+-++.++.+++++..+++.+|+|-.......+.. |.||+..|-|+++-+ .+ +-.|+|
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~-GGPGAvFWMWi~Al~-Gm--at~f~E 114 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIAL-GGPGAVFWMWIVALF-GM--ATKFAE 114 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHc-CCCccHHHHHHHHHH-HH--HHHHHH
Confidence 4567899999999999999999998887776654 555667889986543 33 345555
No 52
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=82.79 E-value=1.3 Score=35.32 Aligned_cols=56 Identities=23% Similarity=0.421 Sum_probs=37.5
Q ss_pred CccchHHHHHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy5069 52 PKMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSE 109 (113)
Q Consensus 52 r~Lg~~~l~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~~~al~yaE 109 (113)
++-+.++..+..++.++|+|++..|-... ..|-. ..++.-++.++++.....-..+
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~-~~G~~-~g~i~l~~~~~~s~~t~~~l~~ 56 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFA-QSGWV-LGIILLVLVALLSYYTMYLLVR 56 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHH-Hhhhh-hhhHHHHHHHHHHHHhhhhhhc
Confidence 35688999999999999999999987744 45633 2344444455555444444333
No 53
>KOG1305|consensus
Probab=78.24 E-value=5.9 Score=33.55 Aligned_cols=59 Identities=24% Similarity=0.478 Sum_probs=44.5
Q ss_pred cCccchHHHHHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy5069 51 KPKMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSELV 111 (113)
Q Consensus 51 ~r~Lg~~~l~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~~~al~yaEL~ 111 (113)
+++.+.+..+.-.++.++|+||+..|-. .+..| ....++.-.+.|++.....+++.+.+
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~a-fk~~G-iv~gi~li~~~a~~s~~sl~~l~~~a 61 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYA-FKTAG-LLLGILLIVLSAFLSLLSLYLLSKCA 61 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHH-HHHhc-HHHHHHHHHHHHHHHHhHHHHHHHhh
Confidence 3556888899999999999999999876 55677 33455666777777777777776654
No 54
>KOG1304|consensus
Probab=77.69 E-value=15 Score=31.92 Aligned_cols=35 Identities=23% Similarity=0.417 Sum_probs=28.2
Q ss_pred cCccchHHHHHHHhcceeecccccccHHHHHhhCch
Q psy5069 51 KPKMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSV 86 (113)
Q Consensus 51 ~r~Lg~~~l~~l~vG~~IGsGIF~~pg~i~~~aG~~ 86 (113)
+.-++..+.+.-.+-+++|+|+|..|.. .+.+|-+
T Consensus 44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~A-Fk~sG~~ 78 (449)
T KOG1304|consen 44 EHPTSATQTLIHLLKGSIGTGILSLPLA-FKNSGLV 78 (449)
T ss_pred CCCCchHHHHHHHHHhhhccccccChHH-HHhcchH
Confidence 3458888888888999999999999876 6667744
No 55
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=76.79 E-value=4.1 Score=35.05 Aligned_cols=55 Identities=15% Similarity=0.181 Sum_probs=38.2
Q ss_pred cchHHHHHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy5069 54 MTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSELV 111 (113)
Q Consensus 54 Lg~~~l~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~~~al~yaEL~ 111 (113)
-+..+. ....|..||+|++++|-. ....|-+ ..++.-+++..++....+.++|..
T Consensus 20 ~d~~W~-l~l~GTAIGAGmLfLPI~-~g~~Gf~-p~lillll~~p~m~~s~l~L~e~~ 74 (443)
T PRK13629 20 SDTTWT-LGLFGTAIGAGVLFFPIR-AGFGGLI-PILLMLVLAYPIAFYCHRALARLC 74 (443)
T ss_pred ccchHH-HHHHHHHHhHHHHHHHHH-HhcchHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344333 567799999999999876 3334533 466666777777788888888863
No 56
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=75.27 E-value=4 Score=34.87 Aligned_cols=55 Identities=15% Similarity=0.263 Sum_probs=37.1
Q ss_pred CccchHHHHHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5069 52 PKMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSEL 110 (113)
Q Consensus 52 r~Lg~~~l~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~~~al~yaEL 110 (113)
..++.++++++.+++.||.|-.......+...| ++...|-|+.+ ++.+ +..|+|.
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~a-llGm--~~~~~e~ 99 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTA-FIGM--ATKFVES 99 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHH-HHHH--HHHHHHH
Confidence 459999999999999999994444344455555 45577888754 3333 4455553
No 57
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=73.31 E-value=8.7 Score=27.56 Aligned_cols=44 Identities=11% Similarity=0.106 Sum_probs=24.8
Q ss_pred HHHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy5069 59 GITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSELV 111 (113)
Q Consensus 59 l~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~~~al~yaEL~ 111 (113)
+++++++.|++ |+|+.+..++ ..+..+++.+..+..+..|.-++
T Consensus 18 lif~g~~vmy~-gi~f~~~~~i--------m~ifmllG~L~~l~S~~VYfwIG 61 (114)
T PF11023_consen 18 LIFIGMIVMYI-GIFFKASPII--------MVIFMLLGLLAILASTAVYFWIG 61 (114)
T ss_pred HHHHHHHHHhh-hhhhcccHHH--------HHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566677776 7888655433 23344555555555555555443
No 58
>PF12666 PrgI: PrgI family protein; InterPro: IPR024414 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 116 and 146 amino acids in length. PrgI is found encoded on plasmids of Enterococcus faecalis, its function is not known.
Probab=67.92 E-value=7.6 Score=25.57 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=25.1
Q ss_pred CccCccchHHHHHHHhcceeecccccccHHHH
Q psy5069 49 CLKPKMTLLNGITVIVGSIIGSGIFVSPTGVL 80 (113)
Q Consensus 49 ~l~r~Lg~~~l~~l~vG~~IGsGIF~~pg~i~ 80 (113)
+.=-.++..+++.++++..+|.|+|......+
T Consensus 12 ki~~GlT~RQl~~l~~~~~~~~~~~~~~~~~l 43 (93)
T PF12666_consen 12 KIFFGLTLRQLICLAIGALVGVGVYLLLWFFL 43 (93)
T ss_pred hhccCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33346799999999999999999888765433
No 59
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=59.62 E-value=18 Score=30.52 Aligned_cols=53 Identities=15% Similarity=0.263 Sum_probs=40.9
Q ss_pred HHHHHhcceeecccccccHHHHHhhCchH-HHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5069 59 GITVIVGSIIGSGIFVSPTGVLKETGSVN-LALVVWTISGVFSMVGAYCYSELVL 112 (113)
Q Consensus 59 l~~l~vG~~IGsGIF~~pg~i~~~aG~~g-~allaWlv~gl~~~~~al~yaEL~s 112 (113)
..+..+|.++|+| |.+-+.+.+..|.-| .+.++-++++++..+.+....+++.
T Consensus 8 ~~f~~ig~~vGAG-fAsGqEi~QFF~~~G~~s~~gIivs~vlf~~~g~vim~ig~ 61 (349)
T COG3949 8 WAFAFIGTVVGAG-FASGQEIMQFFGKYGVYSILGIILSTVLFTLSGAVIMTIGK 61 (349)
T ss_pred HHHHHHHHhhccc-ccchHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678999999 888888888887543 3677888889888888888877763
No 60
>PLN03074 auxin influx permease; Provisional
Probab=51.64 E-value=48 Score=28.35 Aligned_cols=47 Identities=6% Similarity=0.157 Sum_probs=29.7
Q ss_pred ccchHHHHHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHHHH
Q psy5069 53 KMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSM 101 (113)
Q Consensus 53 ~Lg~~~l~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~ 101 (113)
..+..+.++-.+...||.||+.+|-. ++..|=. ..++..++.+++..
T Consensus 45 ~~s~~~~~~~l~~~~vG~GILaLP~A-f~~~G~v-~Gii~lv~~~~l~~ 91 (473)
T PLN03074 45 GGSVYDAWFSCASNQVAQVLLTLPYS-FSQLGML-SGILFQIFYGLLGS 91 (473)
T ss_pred CchHHHHHHHHHHHHHhHHHHhHHHH-HHHccHH-HHHHHHHHHHHHHH
Confidence 44555656668888899999999877 5556633 23344444554443
No 61
>PRK11375 allantoin permease; Provisional
Probab=49.12 E-value=71 Score=27.30 Aligned_cols=60 Identities=17% Similarity=0.125 Sum_probs=35.8
Q ss_pred CCCCcccccCccCccchHHHHHHHhcceeecccccccHHHHHhhC-chHHHHHHHHHHHHHH
Q psy5069 40 GQTRAEDTVCLKPKMTLLNGITVIVGSIIGSGIFVSPTGVLKETG-SVNLALVVWTISGVFS 100 (113)
Q Consensus 40 ~~~~~~~~~~l~r~Lg~~~l~~l~vG~~IGsGIF~~pg~i~~~aG-~~g~allaWlv~gl~~ 100 (113)
.++|-+.-.+-+|+-++++...+=+|..+.-.-+...+..+. .| +.+.++++-+++.++.
T Consensus 13 ~n~dl~pvp~~~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l~-~GLs~~~ai~ai~lG~~i~ 73 (484)
T PRK11375 13 YSEDLLPKTQSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFFI-LGLSTFSIMLAIILSAFFI 73 (484)
T ss_pred cCCCCCcCCccccCCcHHHHHHHHHHHhccHHHHHHHHHHHH-ccchHHHHHHHHHHHHHHH
Confidence 344444444556778999998888887776665544444443 34 4445666655555443
No 62
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=33.08 E-value=85 Score=21.33 Aligned_cols=19 Identities=32% Similarity=0.441 Sum_probs=8.1
Q ss_pred hhCchHHHH-HHHHHHHHHH
Q psy5069 82 ETGSVNLAL-VVWTISGVFS 100 (113)
Q Consensus 82 ~aG~~g~al-laWlv~gl~~ 100 (113)
..|...+++ ++.+++|+++
T Consensus 63 ~lG~WN~~IGfg~~~~Gf~m 82 (87)
T PF06781_consen 63 DLGNWNLAIGFGLMIVGFLM 82 (87)
T ss_pred cccchHHHHHHHHHHHHHHH
Confidence 345543322 3444455443
No 63
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=28.96 E-value=67 Score=23.45 Aligned_cols=19 Identities=37% Similarity=0.551 Sum_probs=9.5
Q ss_pred HHHHHHHhcce-eecccccc
Q psy5069 57 LNGITVIVGSI-IGSGIFVS 75 (113)
Q Consensus 57 ~~l~~l~vG~~-IGsGIF~~ 75 (113)
.+.+++++|.+ |.+||..+
T Consensus 7 ~~i~~iilgilli~~gI~~L 26 (191)
T PF04156_consen 7 ISIILIILGILLIASGIAAL 26 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444554444 45565553
No 64
>PRK00159 putative septation inhibitor protein; Reviewed
Probab=25.27 E-value=1.9e+02 Score=19.78 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=8.2
Q ss_pred hCchHHHH-HHHHHHHHHH
Q psy5069 83 TGSVNLAL-VVWTISGVFS 100 (113)
Q Consensus 83 aG~~g~al-laWlv~gl~~ 100 (113)
.|+..+++ ++.++.|+++
T Consensus 64 lG~WN~~IGFg~~i~G~lm 82 (87)
T PRK00159 64 LGPWNYAIGFALMITGLLM 82 (87)
T ss_pred cCchhHHHHHHHHHHHHHH
Confidence 35543322 4455555544
No 65
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=22.05 E-value=4.2e+02 Score=23.51 Aligned_cols=63 Identities=11% Similarity=0.075 Sum_probs=43.9
Q ss_pred CCCCcccccCccCccchHHHHHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHHHHH
Q psy5069 40 GQTRAEDTVCLKPKMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMV 102 (113)
Q Consensus 40 ~~~~~~~~~~l~r~Lg~~~l~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~~ 102 (113)
.++|=....+-+|+-+.++.+.+=.+.+.=-+-|+..+..++..-+++-++++.+++-++...
T Consensus 27 yN~DL~P~~~~~rtWg~~~~~~~W~~~~~nv~~~~~aa~~~~lGLS~~qallai~vG~~iv~i 89 (497)
T COG1953 27 YNEDLAPTPAEQRTWGWWNYFALWLGMVHNVPTYMLAAGLFELGLSPWQALLAILVGNLIVAI 89 (497)
T ss_pred cCCCCCCCccccCcchHHHHHHHHHHhhccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 444555555778999999999999888876676777666666555766667666666555444
No 66
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=20.90 E-value=78 Score=22.40 Aligned_cols=44 Identities=14% Similarity=0.114 Sum_probs=21.5
Q ss_pred chHHHHHHHh--cceeecccccccHHHHHhhCchHHHHHHHHHHHHHHH
Q psy5069 55 TLLNGITVIV--GSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSM 101 (113)
Q Consensus 55 g~~~l~~l~v--G~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~ 101 (113)
=..+.++.+| |..+|..-|+..+.+.. +-+ +++.+|+++.++..
T Consensus 39 CfR~slL~Gi~~G~~vG~~~fl~~~~~~~-A~n--wavgsF~l~s~~~w 84 (118)
T PF12597_consen 39 CFRDSLLYGIAGGFGVGGLRFLFTSNPRK-AAN--WAVGSFFLGSLGSW 84 (118)
T ss_pred cHHHHHHHHHHHHHHHHhhhhcccCCCcc-chh--hhhHHHHHHHHHHH
Confidence 3444445444 44466666777654332 222 24445555544443
No 67
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=20.74 E-value=1.7e+02 Score=16.21 Aligned_cols=14 Identities=7% Similarity=0.366 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHH
Q psy5069 91 VVWTISGVFSMVGA 104 (113)
Q Consensus 91 laWlv~gl~~~~~a 104 (113)
++|+++-.++...+
T Consensus 4 faWilG~~lA~~~~ 17 (30)
T TIGR02106 4 FAWILGTLLACAFG 17 (30)
T ss_pred HHHHHHHHHHHHHH
Confidence 57888877665543
No 68
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=20.15 E-value=1.4e+02 Score=21.05 Aligned_cols=43 Identities=9% Similarity=0.227 Sum_probs=26.1
Q ss_pred hHHHHHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHH
Q psy5069 56 LLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVF 99 (113)
Q Consensus 56 ~~~l~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~ 99 (113)
..+...+..+.++|++|... +.+.+..+...-.++.|.+..+.
T Consensus 90 ~~~~l~~l~~~l~ga~iali-gQ~y~~~~~~~~~~~~W~~~~l~ 132 (145)
T PF09925_consen 90 LAEALLLLGAVLFGALIALI-GQIYQTGADPWQLFLLWALLALP 132 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HhHhcCCCchHHHHHHHHHHHHH
Confidence 45555555555677776655 66677777664456667554443
Done!