Query psy5069
Match_columns 113
No_of_seqs 116 out of 1083
Neff 5.3
Searched_HMMs 29240
Date Sat Aug 17 00:58:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5069.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5069hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.0 2.4E-10 8.1E-15 90.4 5.0 61 49-112 5-65 (445)
2 3gia_A Uncharacterized protein 98.9 8.1E-10 2.8E-14 87.5 5.8 62 49-112 3-64 (444)
3 4djk_A Probable glutamate/gamm 98.2 1.5E-06 5E-11 69.9 5.5 62 45-112 4-66 (511)
4 2jln_A MHP1; hydantoin, transp 53.3 29 0.00099 28.2 6.1 48 51-100 24-72 (501)
5 4aw6_A CAAX prenyl protease 1 19.5 1E+02 0.0034 25.5 3.9 51 59-110 168-218 (482)
6 2lx0_A Membrane fusion protein 10.9 2.2E+02 0.0074 14.9 2.6 13 95-107 9-21 (32)
7 4dve_A Biotin transporter BIOY 7.5 2E+02 0.0069 20.9 2.0 51 51-101 63-114 (198)
8 3kg2_A Glutamate receptor 2; I 5.9 3.4E+02 0.012 22.4 2.7 47 50-101 558-604 (823)
9 2a65_A Leutaa, Na(+):neurotran 4.6 8.5E+02 0.029 20.0 4.4 54 55-111 10-64 (519)
10 3qrx_B Melittin; calcium-bindi 4.1 4.8E+02 0.016 13.1 1.5 18 77-94 3-20 (26)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.01 E-value=2.4e-10 Score=90.41 Aligned_cols=61 Identities=23% Similarity=0.482 Sum_probs=53.9
Q ss_pred CccCccchHHHHHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5069 49 CLKPKMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSELVL 112 (113)
Q Consensus 49 ~l~r~Lg~~~l~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~~~al~yaEL~s 112 (113)
+.||++++++++++++|.+||+|+|..|+.+ +.+|+. ++++|+++++++++.++||+||++
T Consensus 5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~-~~~G~~--~~~~~li~~~~~~~~a~~~~el~~ 65 (445)
T 3l1l_A 5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANL-ASTGGI--AIYGWLVTIIGALGLSMVYAKMSF 65 (445)
T ss_dssp --CCCBCHHHHHHHHHHHHCSSHHHHHHHHH-HHHCTH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcccHHHHHHHHHHhHHhhhHHhhHHHH-HHhhhH--HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5789999999999999999999999999874 457874 789999999999999999999975
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=98.95 E-value=8.1e-10 Score=87.49 Aligned_cols=62 Identities=26% Similarity=0.424 Sum_probs=57.4
Q ss_pred CccCccchHHHHHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5069 49 CLKPKMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSELVL 112 (113)
Q Consensus 49 ~l~r~Lg~~~l~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~~~al~yaEL~s 112 (113)
+.||+++.++++++++|.+||+|+|..++..+..+|+. ++++|+++++++++.++||+||++
T Consensus 3 ~~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~~--~~~~~li~~~~~~~~~~~~~el~~ 64 (444)
T 3gia_A 3 LKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGRN--LPETFILSGIYALLVAYSYTKLGA 64 (444)
T ss_dssp CCCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGGG--HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH--HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36789999999999999999999999999988888873 788999999999999999999986
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=98.21 E-value=1.5e-06 Score=69.88 Aligned_cols=62 Identities=15% Similarity=0.301 Sum_probs=41.2
Q ss_pred ccccCccCccchHHHHHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHHH-HHHHHHHHHhhc
Q psy5069 45 EDTVCLKPKMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFS-MVGAYCYSELVL 112 (113)
Q Consensus 45 ~~~~~l~r~Lg~~~l~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~-~~~al~yaEL~s 112 (113)
+++.+++|++++++++++.++.++| ++..+. ....|+. .++.|++++++. ++.++||+||++
T Consensus 4 ~~~~~~~r~l~~~~~~~l~~~~~ig--~~~~~~--~~~~G~~--~~~~~~i~~~~~~l~~al~~ael~s 66 (511)
T 4djk_A 4 SVQTGKAKQLTLLGFFAITASMVMA--VYEYPT--FATSGFS--LVFFLLLGGILWFIPVGLCAAEMAT 66 (511)
T ss_dssp --------CCCHHHHHHHTGGGGCC--GGGHHH--HHTTTTH--HHHHHHHHHHHTHHHHHHHHHHHHT
T ss_pred cccCccCccccHHHHHHHHHHHHHh--hchhHH--HHhhHHH--HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3456789999999999999999996 555554 3445653 556667777665 459999999986
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=53.33 E-value=29 Score=28.24 Aligned_cols=48 Identities=10% Similarity=0.117 Sum_probs=32.7
Q ss_pred cCccchHHHHHHHhcceeecccccccHHHHHhhC-chHHHHHHHHHHHHHH
Q psy5069 51 KPKMTLLNGITVIVGSIIGSGIFVSPTGVLKETG-SVNLALVVWTISGVFS 100 (113)
Q Consensus 51 ~r~Lg~~~l~~l~vG~~IGsGIF~~pg~i~~~aG-~~g~allaWlv~gl~~ 100 (113)
+|+.++++...+-+|..+..+-|..-+.... | +...++++-+++.++.
T Consensus 24 ~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~--GLs~~~a~lai~lG~li~ 72 (501)
T 2jln_A 24 ERSVGPFSLAAIWFAMAIQVAIFIAAGQMTS--SFQVWQVIVAIAAGCTIA 72 (501)
T ss_dssp GCCBCHHHHHHHHHHHHCSTHHHHHHHHHTT--TSCHHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc--CcCHHHHHHHHHHHHHHH
Confidence 4678999999999999888888776555443 4 4444555555555543
No 5
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=19.54 E-value=1e+02 Score=25.54 Aligned_cols=51 Identities=18% Similarity=0.123 Sum_probs=32.6
Q ss_pred HHHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5069 59 GITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSEL 110 (113)
Q Consensus 59 l~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~~~al~yaEL 110 (113)
+-.+.++.+||.-+....-.+....|..+ -+++|++..++.++..+.|-.+
T Consensus 168 ~k~~~l~~vi~~pl~~~~~~ii~~~g~~~-wl~~w~~~~~~~l~~~~iyP~~ 218 (482)
T 4aw6_A 168 IKKFVVTQCILLPVSSLLLYIIKIGGDYF-FIYAWLFTLVVSLVLVTIYADY 218 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCSSH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCchh-HHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555665544444344566667654 6789999888888877777543
No 6
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=10.93 E-value=2.2e+02 Score=14.95 Aligned_cols=13 Identities=15% Similarity=0.552 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q psy5069 95 ISGVFSMVGAYCY 107 (113)
Q Consensus 95 v~gl~~~~~al~y 107 (113)
++|+++++..++|
T Consensus 9 iaglvalltflaf 21 (32)
T 2lx0_A 9 IAGLVALLTFLAF 21 (32)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455555444443
No 7
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=7.54 E-value=2e+02 Score=20.94 Aligned_cols=51 Identities=14% Similarity=0.182 Sum_probs=30.5
Q ss_pred cCccchHHHHHHHhcceeeccccccc-HHHHHhhCchHHHHHHHHHHHHHHH
Q psy5069 51 KPKMTLLNGITVIVGSIIGSGIFVSP-TGVLKETGSVNLALVVWTISGVFSM 101 (113)
Q Consensus 51 ~r~Lg~~~l~~l~vG~~IGsGIF~~p-g~i~~~aG~~g~allaWlv~gl~~~ 101 (113)
.++.+........+=+.+|-=+|..- +....-.||.+--+++|++++.++-
T Consensus 63 G~r~G~lsv~lYlllG~~GlPVFagg~gG~~~l~gPTgGYLiGF~~aA~v~G 114 (198)
T 4dve_A 63 GPKYGTISVGAFLALALIGLPVLTGGNGGAASFLGPSGGYRIAWLFTPFLIG 114 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCBTTTBCCSGGGGSTTHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHcCccccCCCCchhHHhcchhHHHHHHHHHHHHHH
Confidence 34556666666566666777777653 3334445665546777777766543
No 8
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=5.91 E-value=3.4e+02 Score=22.36 Aligned_cols=47 Identities=17% Similarity=0.342 Sum_probs=25.7
Q ss_pred ccCccchHHHHHHHhcceeecccccccHHHHHhhCchHHHHHHHHHHHHHHH
Q psy5069 50 LKPKMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSM 101 (113)
Q Consensus 50 l~r~Lg~~~l~~l~vG~~IGsGIF~~pg~i~~~aG~~g~allaWlv~gl~~~ 101 (113)
.++.+++...+.+.++.+.+-|.-..|.... +- +.++.|++.+++..
T Consensus 558 ~~~~~~~~~~~~~~~~~l~~~g~~~~p~~~~---~R--~~~~~w~~~~lil~ 604 (823)
T 3kg2_A 558 STNEFGIFNSLWFSLGAFMQQGADISPRSLS---GR--IVGGVWWFFTLIII 604 (823)
T ss_dssp -CHHHHHHHHHHHTTTTSCC------CCCHH---HH--HHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHhcCCCcCCcchh---hh--hHHHHHHHHHHHHH
Confidence 4456788889999999888777555544322 22 24556766665543
No 9
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=4.64 E-value=8.5e+02 Score=20.00 Aligned_cols=54 Identities=20% Similarity=0.332 Sum_probs=32.1
Q ss_pred chHHHHHHHhcceeecccccc-cHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy5069 55 TLLNGITVIVGSIIGSGIFVS-PTGVLKETGSVNLALVVWTISGVFSMVGAYCYSELV 111 (113)
Q Consensus 55 g~~~l~~l~vG~~IGsGIF~~-pg~i~~~aG~~g~allaWlv~gl~~~~~al~yaEL~ 111 (113)
+..+.++-.+|..||=|-+-. |-...++.|.. .++.|++.-++ +-.-+-++|++
T Consensus 10 sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgA--FlipYli~l~~-~GiPll~~E~a 64 (519)
T 2a65_A 10 TRLGLILAMAGNAVGLGNFLRFPVQAAENGGGA--FMIPYIIAFLL-VGIPLMWIEWA 64 (519)
T ss_dssp CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHH--HHHHHHHHHHH-THHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcH--HHHHHHHHHHH-HHHHHHHHHHH
Confidence 345667778899999996666 44444554543 55666654333 23455566654
No 10
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=4.09 E-value=4.8e+02 Score=13.10 Aligned_cols=18 Identities=33% Similarity=0.385 Sum_probs=0.0
Q ss_pred HHHHHhhCchHHHHHHHH
Q psy5069 77 TGVLKETGSVNLALVVWT 94 (113)
Q Consensus 77 g~i~~~aG~~g~allaWl 94 (113)
+.++......-.++++|+
T Consensus 3 Ga~LKVLa~~LP~liSWi 20 (26)
T 3qrx_B 3 GAVLKVLTTGLPALISWI 20 (26)
T ss_pred hHHHHHHHccchHHHHHH
Done!