Query psy5069
Match_columns 113
No_of_seqs 116 out of 1083
Neff 5.3
Searched_HMMs 13730
Date Sat Aug 17 00:58:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5069.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5069hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1h2sb_ f.17.4.1 (B:) Sensory 10.0 1.2E+02 0.0089 16.5 2.8 18 94-111 6-23 (60)
2 d1x63a2 g.39.1.3 (A:45-76) Fou 9.6 32 0.0023 17.1 0.1 11 66-76 7-17 (32)
3 d2e74f1 f.23.25.1 (F:1-32) Pet 7.5 1.4E+02 0.0099 14.5 2.1 15 86-100 13-27 (32)
4 d1o82a_ a.64.2.1 (A:) Bacterio 6.4 55 0.004 18.7 0.1 40 52-91 3-43 (70)
5 d1j4na_ f.19.1.1 (A:) Aquapori 4.7 2.2E+02 0.016 18.9 2.5 14 98-111 60-73 (249)
6 d1rzhh2 f.23.10.1 (H:11-35) Ph 4.0 2.5E+02 0.018 13.0 3.7 19 89-107 4-22 (26)
7 d2a65a1 f.54.1.1 (A:5-513) Na( 3.6 4.5E+02 0.032 19.0 3.8 54 55-111 6-60 (509)
8 d1s6la1 a.4.5.79 (A:21-80) Alk 3.5 1.3E+02 0.0093 16.9 0.3 8 65-72 49-56 (60)
9 d1kifa1 c.4.1.2 (A:1-194,A:288 2.9 1.6E+02 0.012 18.0 0.3 7 67-73 5-11 (246)
10 d1qxpa3 b.14.1.1 (A:356-514) C 2.9 3.2E+02 0.023 16.5 1.9 41 9-53 12-52 (159)
No 1
>d1h2sb_ f.17.4.1 (B:) Sensory rhodopsin II transducer, Htr2 {Natronomonas pharaonis [TaxId: 2257]}
Probab=9.98 E-value=1.2e+02 Score=16.52 Aligned_cols=18 Identities=22% Similarity=0.477 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy5069 94 TISGVFSMVGAYCYSELV 111 (113)
Q Consensus 94 lv~gl~~~~~al~yaEL~ 111 (113)
+++++-.++++..|.|..
T Consensus 6 fvgaltvlfgaiaygevt 23 (60)
T d1h2sb_ 6 FVGALTVLFGAIAYGEVT 23 (60)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred EEcHHHHHHhhhhhceeh
Confidence 457777888999999864
No 2
>d1x63a2 g.39.1.3 (A:45-76) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.58 E-value=32 Score=17.06 Aligned_cols=11 Identities=36% Similarity=0.821 Sum_probs=7.9
Q ss_pred ceeeccccccc
Q psy5069 66 SIIGSGIFVSP 76 (113)
Q Consensus 66 ~~IGsGIF~~p 76 (113)
.+||+|-|+--
T Consensus 7 q~igsgsffpk 17 (32)
T d1x63a2 7 QVIGTGSFFPK 17 (32)
T ss_dssp CCCTTSCEEEE
T ss_pred hhcccccccCC
Confidence 46888888753
No 3
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=7.52 E-value=1.4e+02 Score=14.52 Aligned_cols=15 Identities=20% Similarity=0.457 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHHH
Q psy5069 86 VNLALVVWTISGVFS 100 (113)
Q Consensus 86 ~g~allaWlv~gl~~ 100 (113)
.++....|.+++++.
T Consensus 13 fglifvgwglgalll 27 (32)
T d2e74f1 13 FGLIFVGWGLGVLLL 27 (32)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHhHHHHHHh
Confidence 344566788777653
No 4
>d1o82a_ a.64.2.1 (A:) Bacteriocin AS-48 {Enterococcus faecalis [TaxId: 1351]}
Probab=6.38 E-value=55 Score=18.72 Aligned_cols=40 Identities=18% Similarity=0.297 Sum_probs=18.5
Q ss_pred CccchHHHHHHHhcceee-cccccccHHHHHhhCchHHHHH
Q psy5069 52 PKMTLLNGITVIVGSIIG-SGIFVSPTGVLKETGSVNLALV 91 (113)
Q Consensus 52 r~Lg~~~l~~l~vG~~IG-sGIF~~pg~i~~~aG~~g~all 91 (113)
|++|....++-.+=+++- .|+..+.-.++...|+.+++++
T Consensus 3 kefgipa~ia~~vlniv~agg~vttivsil~avgsgglsll 43 (70)
T d1o82a_ 3 KEFGIPAAVAGTVLNVVEAGGWVTTIVSILTAVGSGGLSLL 43 (70)
T ss_dssp HHHCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHCHHHHHHH
T ss_pred hhhCCcHHHHHHHHHhhccCcchhhHHHHHHHHccccHHHH
Confidence 344444444444434432 3444444455555666555443
No 5
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.67 E-value=2.2e+02 Score=18.93 Aligned_cols=14 Identities=7% Similarity=-0.130 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHhh
Q psy5069 98 VFSMVGAYCYSELV 111 (113)
Q Consensus 98 l~~~~~al~yaEL~ 111 (113)
+..+...+++..++
T Consensus 60 ~~v~~~i~~~g~iS 73 (249)
T d1j4na_ 60 LSIATLAQSVGHIS 73 (249)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccc
Confidence 33444455555553
No 6
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.01 E-value=2.5e+02 Score=12.95 Aligned_cols=19 Identities=11% Similarity=0.116 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy5069 89 ALVVWTISGVFSMVGAYCY 107 (113)
Q Consensus 89 allaWlv~gl~~~~~al~y 107 (113)
++-.|+.-+++++++-+-.
T Consensus 4 slaiw~fw~ffalli~ylq 22 (26)
T d1rzhh2 4 SLAIYSFWIFLAGLIYYLQ 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3345666666666655443
No 7
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=3.60 E-value=4.5e+02 Score=18.96 Aligned_cols=54 Identities=20% Similarity=0.306 Sum_probs=30.9
Q ss_pred chHHHHHHHhcceeecccccc-cHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy5069 55 TLLNGITVIVGSIIGSGIFVS-PTGVLKETGSVNLALVVWTISGVFSMVGAYCYSELV 111 (113)
Q Consensus 55 g~~~l~~l~vG~~IGsGIF~~-pg~i~~~aG~~g~allaWlv~gl~~~~~al~yaEL~ 111 (113)
+..+.+.=.+|..+|-|-+-- |-...++.|.. .++.|++.-+ .+..-+-+.|++
T Consensus 6 s~~~fila~~g~avGlGNiWrFPyl~~~nGGga--FlipY~~~l~-l~gvPll~lE~~ 60 (509)
T d2a65a1 6 TRLGLILAMAGNAVGLGNFLRFPVQAAENGGGA--FMIPYIIAFL-LVGIPLMWIEWA 60 (509)
T ss_dssp CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHH--HHHHHHHHHH-HTHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcccHHHhhhHHHHhcCCch--hHHHHHHHHH-HHHHHHHHHHHH
Confidence 345667777888888887665 44545555543 4556654322 233344555553
No 8
>d1s6la1 a.4.5.79 (A:21-80) Alkylmercury lyase MerB {Escherichia coli [TaxId: 562]}
Probab=3.51 E-value=1.3e+02 Score=16.89 Aligned_cols=8 Identities=63% Similarity=1.232 Sum_probs=4.1
Q ss_pred cceeeccc
Q psy5069 65 GSIIGSGI 72 (113)
Q Consensus 65 G~~IGsGI 72 (113)
|.+||.|+
T Consensus 49 G~ivG~GL 56 (60)
T d1s6la1 49 GNIIGYGL 56 (60)
T ss_dssp TEECCCCS
T ss_pred CCEEeeee
Confidence 44555553
No 9
>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=2.90 E-value=1.6e+02 Score=18.02 Aligned_cols=7 Identities=43% Similarity=1.213 Sum_probs=0.0
Q ss_pred eeecccc
Q psy5069 67 IIGSGIF 73 (113)
Q Consensus 67 ~IGsGIF 73 (113)
+||+||.
T Consensus 5 VIGaGi~ 11 (246)
T d1kifa1 5 VIGAGVI 11 (246)
T ss_dssp EECCSHH
T ss_pred EECchHH
No 10
>d1qxpa3 b.14.1.1 (A:356-514) Calpain large subunit, middle domain (domain III) {Rat (Rattus norvegicus), mu-type [TaxId: 10116]}
Probab=2.87 E-value=3.2e+02 Score=16.45 Aligned_cols=41 Identities=17% Similarity=0.095 Sum_probs=0.0
Q ss_pred ccccCCCCCcCCCCcccccCCCCCccCCCCCCCCCcccccCccCc
Q psy5069 9 KESSAGGKRESDIPLEEATEHSPIFETAEPGGQTRAEDTVCLKPK 53 (113)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~r~ 53 (113)
+.++|||.+. .+.+-..||+|..........+......+..
T Consensus 12 ~g~tAGG~~~----~~~tf~~NPQy~l~v~~~~~~~~~~~~~~~~ 52 (159)
T d1qxpa3 12 RGSTAGGCRN----YPATFWVNPQFKIRLEEVDDADDYDSRESGC 52 (159)
T ss_dssp TTTTCCCCTT----CTTTGGGSCBCEEEECSCCC-----CCSSCC
T ss_pred CCCCcCCCCC----cccccccCCEEEEEecCcccccccccCCCcc
Done!