RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5069
(113 letters)
>gnl|CDD|233179 TIGR00911, 2A0308, L-type amino acid transporter. [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 501
Score = 100 bits (251), Expect = 4e-26
Identities = 48/110 (43%), Positives = 65/110 (59%), Gaps = 10/110 (9%)
Query: 1 MVVSRKNSKESSAGGKRESDIPLEEATEHSPIFETAEPGGQTRAEDTVCLKPKMTLLNGI 60
M R +S+A + S + S T + G V LK ++TLL+G+
Sbjct: 1 MSKGRVFRSQSNATNYQFS----SSGRKKSVSASTVDGGEA------VALKKEITLLSGV 50
Query: 61 TVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSEL 110
+IVG+IIGSGIFVSP GVLK GSV LAL++W + G+FS+VGA Y+EL
Sbjct: 51 GIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAEL 100
>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and
metabolism].
Length = 466
Score = 41.3 bits (97), Expect = 3e-05
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 50 LKPKMTLLNGITVI-VGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYS 108
LK K+ L + +T + VGS+IGSGIF P + LA W I+G+ + A Y+
Sbjct: 10 LKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLAPAAILA---WLIAGIIILFLALSYA 66
Query: 109 ELV 111
EL
Sbjct: 67 ELS 69
>gnl|CDD|129983 TIGR00905, 2A0302, transporter, basic amino acid/polyamine
antiporter (APA) family. This family includes several
families of antiporters that, rather commonly, are
encoded next to decarboxylases that convert one of the
antiporter substrates into the other. This arrangement
allows a cycle that can remove proteins from the
cytoplasm and thereby protect against acidic conditions
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 473
Score = 40.0 bits (94), Expect = 6e-05
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 53 KMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSEL 110
K+ L +++GS+IGSGIF P L ++ W I+GV + A+ ++ L
Sbjct: 8 KLGLFALTALVIGSMIGSGIFSLPQN-LASVAGPGAVIIGWIITGVGMLALAFVFAIL 64
>gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease.
Length = 425
Score = 39.2 bits (92), Expect = 1e-04
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 54 MTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSEL 110
++LL+ +++GSIIGSGIFV+P L + L W + +FS+ A Y+EL
Sbjct: 1 LSLLSAFALVIGSIIGSGIFVTP---LIASAGAAAILWGWIAALIFSLAVALVYAEL 54
>gnl|CDD|183096 PRK11357, frlA, putative fructoselysine transporter; Provisional.
Length = 445
Score = 37.9 bits (88), Expect = 4e-04
Identities = 20/61 (32%), Positives = 33/61 (54%)
Query: 50 LKPKMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSE 109
L+ K+ + + VG+ +GSGIFVS V K G+ L ++ + I G+ + Y+E
Sbjct: 6 LQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAE 65
Query: 110 L 110
L
Sbjct: 66 L 66
>gnl|CDD|129984 TIGR00906, 2A0303, cationic amino acid transport permease.
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 557
Score = 35.2 bits (81), Expect = 0.004
Identities = 18/60 (30%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 50 LKPKMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSE 109
+K +T + + + +GS IG+GI+V TG + S ++ + ISG+ +++ +CY+E
Sbjct: 26 MKRCLTTWDLMALGIGSTIGAGIYVL-TGEVARNDSGPAIVLSFLISGLAAVLSGFCYAE 84
>gnl|CDD|163522 TIGR03810, arg_ornith_anti, arginine-ornithine antiporter.
Members of this protein family are the
arginine/ornithine antiporter, ArcD. This exchanger of
ornithine for arginine occurs in a system with arginine
deiminase, ornithine carbamoyltransferase, and
carbamate kinase, with together turn arginine to
ornithine with the generation of ATP and release of CO2
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 468
Score = 31.6 bits (72), Expect = 0.060
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 52 PKMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGV 98
K+ L ++VGS+IGSGIF P+ + + L+ W I+GV
Sbjct: 1 KKLGLGALTALVVGSMIGSGIFSLPSD-MAAGAAAGAVLIGWVITGV 46
>gnl|CDD|223187 COG0109, CyoE, Polyprenyltransferase (cytochrome oxidase assembly
factor) [Posttranslational modification, protein
turnover, chaperones].
Length = 304
Score = 30.3 bits (69), Expect = 0.14
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 12/57 (21%)
Query: 50 LKPKMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYC 106
KP++ L IT G ++ GS+N L++ T+ G G
Sbjct: 25 TKPRVISLLLITAFAGMLLAPR------------GSINPLLLLLTLLGGALGAGGAG 69
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and
metabolism].
Length = 415
Score = 29.9 bits (68), Expect = 0.23
Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 50 LKPKMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSE 109
+K + L G+ ++ G+ IG+G+ P G L++ I+ + + E
Sbjct: 5 MKKTSSDLGGVLILAGTAIGAGVLFLPVA-FGGGGFWPG-LLLLIIAWPLTYLSLLLLLE 62
Query: 110 LVL 112
+L
Sbjct: 63 ALL 65
>gnl|CDD|182622 PRK10655, potE, putrescine transporter; Provisional.
Length = 438
Score = 29.2 bits (66), Expect = 0.38
Identities = 16/59 (27%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 51 KPKMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSE 109
KM ++ + +++GSGI + PT L + G++ +++ W ++ V SM AY +++
Sbjct: 5 SNKMGVVQLTILTAVNMMGSGIIMLPTK-LAQVGTI--SILSWLVTAVGSMALAYAFAK 60
>gnl|CDD|191530 pfam06454, DUF1084, Protein of unknown function (DUF1084). This
family consists of several hypothetical plant specific
proteins of unknown function.
Length = 280
Score = 28.9 bits (65), Expect = 0.47
Identities = 15/63 (23%), Positives = 29/63 (46%)
Query: 41 QTRAEDTVCLKPKMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFS 100
Q R T L+P +NG+ + II I+ P ++ T + A++ ++ + F
Sbjct: 121 QARNLPTDKLRPAFYTINGVVYAIQIIIWILIWAGPNSAMEITSKIFFAVISFSAALGFL 180
Query: 101 MVG 103
+ G
Sbjct: 181 LYG 183
>gnl|CDD|215858 pfam00324, AA_permease, Amino acid permease.
Length = 473
Score = 28.8 bits (65), Expect = 0.59
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 59 GITVI-VGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSELV 111
+ +I +G +IG+G+FV +G + AL+ + I+GV + E+
Sbjct: 1 HVLMIALGGVIGTGLFVG-SGSVLGQAGPAGALLGYLIAGVVIFLTMLSLGEMS 53
>gnl|CDD|213911 TIGR04298, his_histam_anti, histidine-histamine antiporter.
Members of this protein family are antiporters that
exchange histidine with histamine, product of histidine
decarboxylation. A system consisting of this protein,
and a histidine decarboxylase encoded by an adjacent
gene, creates decarboxylation/antiport proton-motive
cycle that provides a transient resistance to acidic
conditions.
Length = 429
Score = 28.4 bits (63), Expect = 0.73
Identities = 16/59 (27%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 53 KMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSELV 111
KM ++ V +++GSG+F+ PT L G++++ ++TI GV ++ + + L+
Sbjct: 1 KMGVIALTLVTASNMMGSGVFLLPTN-LAGIGAISIFGWIFTIIGVIALALVFAKTSLI 58
>gnl|CDD|233428 TIGR01473, cyoE_ctaB, protoheme IX farnesyltransferase. This model
describes protoheme IX farnesyltransferase, also called
heme O synthase, an enzyme that creates an intermediate
in the biosynthesis of heme A. Prior to the description
of its enzymatic function, this protein was often called
a cytochrome o ubiquinol oxidase assembly factor
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Heme, porphyrin, and cobalamin].
Length = 280
Score = 28.4 bits (64), Expect = 0.81
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 11/56 (19%)
Query: 51 KPKMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYC 106
KP++ L IT G + G VN L++ T+ G +
Sbjct: 8 KPRIISLLLITAFAGMWLAPGGA-----------LVNPPLLLLTLLGTTLAAASAN 52
>gnl|CDD|182492 PRK10483, PRK10483, tryptophan permease; Provisional.
Length = 414
Score = 27.4 bits (61), Expect = 1.8
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 55 TLLNGITVIVGSIIGSGIFVSP 76
+LL G+ +I G+IIG+G+F P
Sbjct: 12 SLLGGVVIIGGTIIGAGMFSLP 33
>gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter. [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 429
Score = 27.4 bits (61), Expect = 1.9
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 50 LKPKMTLLNGITVIVGSIIGSGIF-VSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYS 108
L ++ L + + +G++IG+GIF V+ K +V L+ + ++G+ ++ A Y+
Sbjct: 1 LSRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPAVILS---FVLAGLTALFIALVYA 57
Query: 109 EL 110
EL
Sbjct: 58 EL 59
>gnl|CDD|184001 PRK13362, PRK13362, protoheme IX farnesyltransferase; Provisional.
Length = 306
Score = 26.9 bits (60), Expect = 2.1
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 12/57 (21%)
Query: 50 LKPKMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYC 106
KP + N I+V G + S G V+ L++ + G+ +V + C
Sbjct: 20 TKPGIIFGNVISVAGGFFLAS------------KGHVDPVLMLAAVIGLSLVVASGC 64
>gnl|CDD|198202 cd10339, SH2_RIN_family, Src homology 2 (SH2) domain found in Ras
and Rab interactor (RIN)-family. The RIN (AKA Ras
interaction/interference) family is composed of RIN1,
RIN2 and RIN3. These proteins have multifunctional
domains including SH2 and proline-rich (PR) domains in
the N-terminal region, and RIN-family homology (RH),
VPS9 and Ras-association (RA) domains in the C-terminal
region. RIN proteins function as Rab5-GEFs, and RIN3
specifically functions as a Rab31-GEF. In general SH2
domains are involved in signal transduction. They
typically bind pTyr-containing ligands via two surface
pockets, a pTyr and hydrophobic binding pocket, allowing
proteins with SH2 domains to localize to tyrosine
phosphorylated sites.
Length = 101
Score = 26.3 bits (58), Expect = 2.1
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 69 GSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSELVL 112
FVS + + G V+L +F ++ YC+S +L
Sbjct: 55 SGPAFVSEHYIKESPGGVSLEGSELMFPDLFRLIAFYCHSRDIL 98
>gnl|CDD|213912 TIGR04299, antiport_PotE, putrescine-ornithine antiporter. Members
of this protein family are putrescine-ornithine
antiporter. They work together with an enzyme that
decarboxylates ornithine to putrescine. This two-gene
system has the net effect of removing a protein from the
cytosol, providing transient resistance to acid
conditions.
Length = 430
Score = 26.8 bits (59), Expect = 2.5
Identities = 15/58 (25%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 51 KPKMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYS 108
K KM+++ + +++GSGI + PT L + G+ ++++ W ++ V +M A+ ++
Sbjct: 3 KKKMSVVQLTILTAVNMMGSGIIMLPTN-LAQVGT--MSIISWLVTAVGAMALAWAFA 57
>gnl|CDD|236549 PRK09528, lacY, galactoside permease; Reviewed.
Length = 420
Score = 26.8 bits (60), Expect = 2.5
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 52 PKMTLLNGITVIVGSIIGSGIFVSPTGV 79
K LL T++ IIGSG P V
Sbjct: 291 AKNALLLAGTIMAVRIIGSGFATGPLEV 318
>gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport
and metabolism].
Length = 417
Score = 26.1 bits (58), Expect = 4.2
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 59 GITVIVGSIIGSGIFVSP---TGVLKETGSVNLALVVWTISGVFSMV 102
+T IVG+I G G F P L TGS A ++ + ++V
Sbjct: 349 AVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALV 395
>gnl|CDD|215242 PLN02441, PLN02441, cytokinin dehydrogenase.
Length = 525
Score = 26.0 bits (58), Expect = 5.1
Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 10/64 (15%)
Query: 39 GGQTRAEDTVCLKPKMTLLNGITVIVGSIIGSG--IFVSPTG------VLKETGSVNLAL 90
GQ +A V + M L G I+ SG +V +G VLK T LA
Sbjct: 103 NGQAQAPGGVVVD--MRSLRGGVRGPPVIVVSGDGPYVDVSGGELWIDVLKATLKHGLAP 160
Query: 91 VVWT 94
WT
Sbjct: 161 RSWT 164
>gnl|CDD|237688 PRK14358, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 481
Score = 26.1 bits (57), Expect = 5.1
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 11/51 (21%)
Query: 35 TAEPG----GQTRAEDTVCLKPKMTLLNGITVIVGSIIGSGIFVSPTGVLK 81
T EPG GQTR D V + +V+ S++ G + P VL+
Sbjct: 278 TIEPGVLLRGQTRVADGV-------TIGAYSVVTDSVLHEGAVIKPHSVLE 321
>gnl|CDD|215422 PLN02788, PLN02788, phenylalanine-tRNA synthetase.
Length = 402
Score = 25.9 bits (57), Expect = 5.2
Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 5/58 (8%)
Query: 29 HSPIFETAEPGGQTRAEDTVCLKPKMTLLNGITVIVGSIIGSGIFVS---PTGVLKET 83
+P E GG A D V + T N + + S IG + P G+LK
Sbjct: 21 RAPAVSAVEIGGVAIARDEVVREDDPT--NNVPDHIFSKIGMQLHRRPDHPLGILKNA 76
>gnl|CDD|234827 PRK00733, hppA, membrane-bound proton-translocating
pyrophosphatase; Validated.
Length = 666
Score = 25.9 bits (58), Expect = 5.8
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 56 LLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALV--VWTISGVFSMVGAYCYSELVL 112
LL I+ SIIG FV L + G+ AL + ++ V S+V Y + +L
Sbjct: 240 LLIAAVGIIASIIGI-FFVR----LGKGGNPMKALNRGLI-VTAVLSIVLTYFATYWLL 292
>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug
and toxic compound extrusion (MATE) proteins. The
integral membrane proteins from the MATE family are
involved in exporting metabolites across the cell
membrane and are responsible for multidrug resistance
(MDR) in many bacteria and animals. A number of family
members are involved in the synthesis of peptidoglycan
components in bacteria.
Length = 433
Score = 25.8 bits (57), Expect = 6.2
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 54 MTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSELVL 112
+ L NGI V V S++ I L + LAL + ++ +V Y ++E +L
Sbjct: 60 LALGNGIQVGVSSLLARAIGAQRAKELDQAADSGLALAL--LAATVIVVLGYIFAEPLL 116
>gnl|CDD|182022 PRK09664, PRK09664, tryptophan permease TnaB; Provisional.
Length = 415
Score = 25.6 bits (56), Expect = 6.3
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 51 KPKMTLLNGITVIVGSIIGSGIFVSP 76
+ K + G+ VI G++IG G+F P
Sbjct: 6 EKKHSAFWGVMVIAGTVIGGGMFALP 31
>gnl|CDD|217759 pfam03845, Spore_permease, Spore germination protein.
Length = 320
Score = 25.7 bits (57), Expect = 6.8
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 60 ITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSEL 110
+IV +GSGI P + K+ G +A++ + G+ ++ Y +L
Sbjct: 8 FFLIVSFQLGSGILTLPRSLAKQAGDGWIAVL---LGGLIGLLLVLLYYKL 55
>gnl|CDD|218458 pfam05136, Phage_portal_2, Phage portal protein, lambda family.
This protein forms a hole, or portal, that enables DNA
passage during packaging and ejection. It also forms
the junction between the phage capsid and the tail
proteins.
Length = 352
Score = 25.7 bits (57), Expect = 6.8
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 58 NGITVIVGSIIGSGIFVSPT 77
I +V +++G+GI
Sbjct: 44 GAIDRLVSNVVGTGIKPQSK 63
>gnl|CDD|235293 PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional.
Length = 296
Score = 25.5 bits (57), Expect = 7.0
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 12/57 (21%)
Query: 50 LKPKMTLLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYC 106
KP++ LN T + G ++ G L L++ T+ G+ + GA
Sbjct: 17 TKPRVISLNLFTALGGMLLAPP------------GVPPLLLLLLTLLGIALVAGAAG 61
>gnl|CDD|112053 pfam03222, Trp_Tyr_perm, Tryptophan/tyrosine permease family.
Length = 393
Score = 25.7 bits (57), Expect = 7.3
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 56 LLNGITVIVGSIIGSGIFVSPTGVLKETGSVNLALVVWTISGVFSMVGAYCYSELVL 112
LL G+ +I G+ IG+G+ P G + +L++ +S + E+ L
Sbjct: 5 LLGGVLIIAGTAIGAGMLALPV-ATAGAGFIP-SLLLLILSWFLMLASGLLLLEVYL 59
>gnl|CDD|214431 MTH00142, COX1, cytochrome c oxidase subunit I; Provisional.
Length = 511
Score = 25.5 bits (56), Expect = 8.8
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 50 LKPKMTLLNGITVIVGSIIGSGIFVSP--TGVLKETG-SVNLALVVWTISGVFSMVGA 104
L P + LL + V S G+G V P + L +G SV+LA+ ++GV S++GA
Sbjct: 103 LPPALLLLLS-SAAVESGAGTGWTVYPPLSSNLAHSGGSVDLAIFSLHLAGVSSILGA 159
>gnl|CDD|239431 cd03315, MLE_like, Muconate lactonizing enzyme (MLE) like subgroup
of the enolase superfamily. Enzymes of this subgroup
share three conserved carboxylate ligands for the
essential divalent metal ion (usually Mg2+), two
aspartates and a glutamate, and residues that can
function as general acid/base catalysts, a Lys-X-Lys
motif and another conserved lysine. Despite these
conserved residues, the members of the MLE subgroup,
like muconate lactonizing enzyme, o-succinylbenzoate
synthase (OSBS) and N-acylamino acid racemase (NAAAR),
catalyze different reactions.
Length = 265
Score = 25.0 bits (55), Expect = 9.2
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 35 TAEPGGQTRAEDTVCLKPKMTLLNGITVIVGSIIGSGI 72
TA+ GG T+A+ + + G+ V+VGS+I SG+
Sbjct: 211 TAKTGGLTKAQRVL----AVAEALGLPVMVGSMIESGL 244
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.132 0.371
Gapped
Lambda K H
0.267 0.0487 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,506,907
Number of extensions: 477501
Number of successful extensions: 467
Number of sequences better than 10.0: 1
Number of HSP's gapped: 459
Number of HSP's successfully gapped: 70
Length of query: 113
Length of database: 10,937,602
Length adjustment: 77
Effective length of query: 36
Effective length of database: 7,522,344
Effective search space: 270804384
Effective search space used: 270804384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.8 bits)