BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5071
(366 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q77373|POL_HV1AN Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate ANT70) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 38.9 bits (89), Expect = 0.063, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 10/81 (12%)
Query: 143 SELMAILLCVKNLIFLPSTNFTLISDSMSALLAISN--CKNDHPLVSLVYTTWLEAKDCG 200
+ELMAILL +++ +++DS AL IS+ +++ P+V + +E
Sbjct: 1063 AELMAILLALQD----SKETVNIVTDSQYALGVISSQPTQSESPIVQQI----IEELTKK 1114
Query: 201 KNLNFVWCPSHCGITGNELVD 221
+ + W P+H GI GNE +D
Sbjct: 1115 EQVYLTWVPAHKGIGGNEKID 1135
>sp|Q79666|POL_HV1MV Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate MVP5180) GN=gag-pol PE=3 SV=3
Length = 1446
Score = 36.6 bits (83), Expect = 0.28, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 10/81 (12%)
Query: 143 SELMAILLCVKNLIFLPSTNFTLISDSMSALLAISN--CKNDHPLVSLVYTTWLEAKDCG 200
+ELMA+L+ +++ +++DS L IS+ ++D P+V + +E
Sbjct: 1065 AELMAVLIALQD----SKEQVNIVTDSQYVLGIISSQPTQSDSPIVQQI----IEELTKK 1116
Query: 201 KNLNFVWCPSHCGITGNELVD 221
+ + W P+H GI GNE +D
Sbjct: 1117 ERVYLTWVPAHKGIGGNEKID 1137
>sp|Q9MIY2|NU4LM_DANRE NADH-ubiquinone oxidoreductase chain 4L OS=Danio rerio GN=mt-nd4l
PE=3 SV=1
Length = 98
Score = 35.8 bits (81), Expect = 0.56, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Query: 145 LMAILLCVKNL---IFLPSTNFTLISDSMSA------LLAISNCKNDHPLVSLVYTTWLE 195
L++ LLC++ + +F+ +TL ++SMS LLA S C+ L LV T
Sbjct: 26 LLSALLCLEGMMLSLFISMALWTLKTESMSLSTAPMLLLAFSACEASAGLALLVATARTH 85
Query: 196 AKDCGKNLNFVWC 208
D KNLN + C
Sbjct: 86 GSDHMKNLNLLQC 98
>sp|P22382|POL_SIVGB Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate GB1)
GN=gag-pol PE=3 SV=2
Length = 1441
Score = 35.4 bits (80), Expect = 0.76, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 12/90 (13%)
Query: 134 LNKVNSVLSSELMAILLCVKNLIFLPSTNFTLISDS--MSALLAISNCKNDHPLVSLVYT 191
LN N +EL A+ L +++ + +++DS + +LA + DHP+V +
Sbjct: 1066 LNTTNQ--QTELHAVKLALED----SGSYVNIVTDSQYVVGILASRPTETDHPIVKEI-- 1117
Query: 192 TWLEAKDCGKNLNFVWCPSHCGITGNELVD 221
+E + + W P+H GI GNE +D
Sbjct: 1118 --IELMKGKEKIYLSWLPAHKGIGGNEQID 1145
>sp|Q1MWK4|NU4LM_DISPE NADH-ubiquinone oxidoreductase chain 4L OS=Distoechurus pennatus
GN=MT-ND4L PE=3 SV=1
Length = 98
Score = 34.7 bits (78), Expect = 1.1, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 127 NQVHAFKLNKVNS-VLSSELMAILLCVKNLIF-------LPSTNFTLISDSMSAL--LAI 176
N + AF L + + V S LM+ LLC++ ++ L ++F + S SM+ L L
Sbjct: 7 NLIMAFSLALIGALVYRSHLMSTLLCLEGMMLSLFIQMALLISHFHMFSMSMAPLILLVF 66
Query: 177 SNCKNDHPLVSLVYTTWLEAKDCGKNLNFVWC 208
S C+ L LV T+ D +NLN + C
Sbjct: 67 SACEAGLGLALLVKTSSNYGNDYVQNLNLLQC 98
>sp|P27980|POL_SIVVG Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM3) GN=gag-pol PE=3 SV=2
Length = 1465
Score = 33.9 bits (76), Expect = 1.9, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 61/140 (43%), Gaps = 14/140 (10%)
Query: 86 PPIVFQQHFHDLVTNKYSDSVLCFTDGSKTVNSTSCAYSIGNQVHAFKLNKVNSVLS--S 143
PP+V + ++ L + + DG+ NS Q ++ K+ + + +
Sbjct: 1034 PPLV--KLWYTLTKEPIPKEDVYYVDGACNRNSREGKAGYITQYGKQRVEKLENTTNQQA 1091
Query: 144 ELMAILLCVKNLIFLPSTNFTLISDSMSAL--LAISNCKNDHPLVSLVYTTWLEAKDCGK 201
ELMAI + +++ N +++DS A+ L ++D PL+ + ++
Sbjct: 1092 ELMAIKMALED----SGPNVNIVTDSQYAMGILTAQPTQSDSPLIEQIIALMVQKH---- 1143
Query: 202 NLNFVWCPSHCGITGNELVD 221
+ W P+ GI GNE +D
Sbjct: 1144 QIYLQWVPADKGIGGNEEID 1163
>sp|P05895|POL_SIVVT Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM TYO-1) GN=gag-pol PE=3 SV=2
Length = 1467
Score = 33.9 bits (76), Expect = 2.2, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 162 NFTLISDSMSAL--LAISNCKNDHPLVSLVYTTWLEAKDCGKNLNFVWCPSHCGITGNEL 219
N +++DS A+ L ++D PLV + ++ + + W P+H GI GNE
Sbjct: 1108 NVNIVTDSQYAMGILTAQPTQSDSPLVEQIIALMIQKQ----QIYLQWVPAHKGIGGNEE 1163
Query: 220 VD 221
+D
Sbjct: 1164 ID 1165
>sp|Q70XH7|NU4LM_CAEFU NADH-ubiquinone oxidoreductase chain 4L OS=Caenolestes fuliginosus
GN=MT-ND4L PE=3 SV=1
Length = 98
Score = 33.5 bits (75), Expect = 2.8, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
Query: 140 VLSSELMAILLCVKNLIF-------LPSTNFTLISDSMSAL--LAISNCKNDHPLVSLVY 190
+ S LM+ LLC++ ++ L ++F + S SM+ L L S C+ L LV
Sbjct: 21 IYRSHLMSTLLCLEGMMLSLFIMMTLTISHFQMFSLSMAPLILLVFSACEAGIGLALLVK 80
Query: 191 TTWLEAKDCGKNLNFVWC 208
T+ D +NLN + C
Sbjct: 81 TSNAHGNDHVQNLNLLQC 98
>sp|Q08GM0|NU4LM_LAGFA NADH-ubiquinone oxidoreductase chain 4L OS=Lagostrophus fasciatus
GN=MT-ND4L PE=3 SV=1
Length = 98
Score = 33.1 bits (74), Expect = 3.7, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 127 NQVHAFKLNKVNSVL-SSELMAILLCVKNLIF-------LPSTNFTLISDSMSAL--LAI 176
N + AF L ++ S LM+ LLC++ ++ L ++F + S SM+ L L
Sbjct: 7 NLIMAFSLALAGVLIYRSHLMSTLLCLEGMMLSLFILMALIISHFHMFSTSMAPLILLVF 66
Query: 177 SNCKNDHPLVSLVYTTWLEAKDCGKNLNFVWC 208
S C+ L LV T+ D +NLN + C
Sbjct: 67 SACEAGVGLALLVKTSSNYGNDYVQNLNLLQC 98
>sp|Q8W9B6|NU4LM_VOMUR NADH-ubiquinone oxidoreductase chain 4L OS=Vombatus ursinus
GN=MT-ND4L PE=3 SV=1
Length = 98
Score = 33.1 bits (74), Expect = 3.8, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 127 NQVHAFKLNKVNSVL-SSELMAILLCVKNLIF-------LPSTNFTLISDSMSAL--LAI 176
N + AF L ++ S LM+ LLC++ ++ L ++F ++S SM+ L L
Sbjct: 7 NLIMAFSLALAGVLIYRSHLMSTLLCLEGMMLSLFILMALLISHFHMLSVSMAPLILLVF 66
Query: 177 SNCKNDHPLVSLVYTTWLEAKDCGKNLNFVWC 208
S C+ L LV T+ D +NLN + C
Sbjct: 67 SACEAGVGLALLVKTSTDYGNDYVQNLNLLQC 98
>sp|O79409|NU4LM_SCYCA NADH-ubiquinone oxidoreductase chain 4L OS=Scyliorhinus canicula
GN=MT-ND4L PE=3 SV=1
Length = 98
Score = 32.7 bits (73), Expect = 4.3, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 9/75 (12%)
Query: 143 SELMAILLCVKNL---IFLPSTNFTLISDSMSA------LLAISNCKNDHPLVSLVYTTW 193
S L++ LLC++ + +F+ + ++L+ +S S+ LL S C+ L LV T+
Sbjct: 24 SHLLSALLCLEGMMLTLFVATATWSLMLNSTSSSILPMILLTFSACEASAGLAILVATSR 83
Query: 194 LEAKDCGKNLNFVWC 208
D +NLN + C
Sbjct: 84 SHGSDNLQNLNLLQC 98
>sp|Q9Y3Z3|SAMH1_HUMAN SAM domain and HD domain-containing protein 1 OS=Homo sapiens
GN=SAMHD1 PE=1 SV=2
Length = 626
Score = 32.3 bits (72), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 37 LCVRIKDMSDFL---PL--ITDSEFVPFTRPRPPWSFQVPSIDFSLHLDNKDNIPPIVFQ 91
LCV+I + L P + D F+P RP W+ + S+ HL N + I P++ Q
Sbjct: 197 LCVQIAGLCHDLGHGPFSHMFDGRFIPLARPEVKWTHEQGSVMMFEHLINSNGIKPVMEQ 256
>sp|P27973|POL_SIVV1 Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM155) GN=gag-pol PE=3 SV=2
Length = 1470
Score = 32.3 bits (72), Expect = 6.1, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 143 SELMAILLCVKNLIFLPSTNFTLISDSMSALLAISNCKNDHPLVSLVYTTWLEAKDCGKN 202
+EL AI + +++ P N S +L ++D PLV + ++ +
Sbjct: 1090 AELTAIKMALED--SGPKVNIVTDSQYAMGILTAQPTQSDSPLVEQIIAQMVQKE----A 1143
Query: 203 LNFVWCPSHCGITGNELVD 221
+ W P+H GI GNE +D
Sbjct: 1144 IYLQWVPAHKGIGGNEEID 1162
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 141,979,551
Number of Sequences: 539616
Number of extensions: 5954042
Number of successful extensions: 11163
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 11159
Number of HSP's gapped (non-prelim): 21
length of query: 366
length of database: 191,569,459
effective HSP length: 119
effective length of query: 247
effective length of database: 127,355,155
effective search space: 31456723285
effective search space used: 31456723285
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)