Query psy5071
Match_columns 366
No_of_seqs 313 out of 1537
Neff 7.9
Searched_HMMs 46136
Date Sat Aug 17 01:00:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5071.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5071hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK06548 ribonuclease H; Provi 99.9 3.1E-22 6.7E-27 172.4 12.9 125 104-230 4-142 (161)
2 PRK08719 ribonuclease H; Revie 99.9 4.8E-22 1E-26 169.6 12.6 121 104-229 3-146 (147)
3 PF00075 RNase_H: RNase H; In 99.9 3E-22 6.6E-27 167.6 8.9 117 104-228 2-131 (132)
4 COG0328 RnhA Ribonuclease HI [ 99.9 2.4E-21 5.1E-26 164.2 12.6 127 104-231 2-146 (154)
5 PRK00203 rnhA ribonuclease H; 99.8 7.4E-21 1.6E-25 163.4 12.0 124 105-231 3-143 (150)
6 cd06222 RnaseH RNase H (RNase 99.8 2.3E-17 4.9E-22 134.9 14.2 122 107-228 1-130 (130)
7 KOG3752|consensus 99.7 5.7E-17 1.2E-21 153.2 10.7 127 103-229 210-364 (371)
8 PRK13907 rnhA ribonuclease H; 99.7 2.3E-16 5E-21 131.7 10.8 120 106-229 2-126 (128)
9 PRK07708 hypothetical protein; 99.5 1.5E-13 3.2E-18 124.7 13.8 127 102-232 70-210 (219)
10 PRK07238 bifunctional RNase H/ 99.4 1.7E-12 3.6E-17 127.7 13.0 121 105-230 2-132 (372)
11 PF13456 RVT_3: Reverse transc 99.2 3E-11 6.4E-16 93.1 7.7 85 140-228 1-85 (87)
12 PF13966 zf-RVT: zinc-binding 96.3 0.0025 5.5E-08 49.1 2.3 41 291-331 37-83 (86)
13 PF05380 Peptidase_A17: Pao re 87.2 2.6 5.6E-05 36.3 7.2 52 104-157 80-143 (159)
14 PF00336 DNA_pol_viral_C: DNA 76.2 3.4 7.5E-05 36.8 3.8 62 103-173 92-153 (245)
15 KOG1812|consensus 43.1 62 0.0013 32.1 6.2 44 137-180 46-89 (384)
16 PF05741 zf-nanos: Nanos RNA b 30.9 19 0.00041 25.2 0.3 19 311-329 34-54 (55)
17 COG3341 Predicted double-stran 29.2 47 0.001 30.0 2.6 92 137-231 105-202 (225)
18 cd01285 nucleoside_deaminase N 28.7 2.2E+02 0.0047 22.4 6.2 52 118-169 18-74 (109)
19 COG4566 TtrR Response regulato 26.4 3.4E+02 0.0073 24.3 7.3 67 147-216 15-90 (202)
20 PRK10860 tRNA-specific adenosi 25.8 1.7E+02 0.0038 25.4 5.6 51 118-168 34-88 (172)
21 PF04863 EGF_alliinase: Alliin 24.5 15 0.00033 25.6 -1.1 25 292-317 18-42 (56)
22 COG0590 CumB Cytosine/adenosin 22.1 1.9E+02 0.0041 24.6 5.0 51 118-168 29-84 (152)
23 KOG2212|consensus 21.7 70 0.0015 31.2 2.4 53 53-113 64-116 (504)
24 cd01284 Riboflavin_deaminase-r 20.5 2.7E+02 0.0059 22.4 5.4 47 118-168 20-67 (115)
25 PRK08298 cytidine deaminase; V 20.3 1.5E+02 0.0032 24.9 3.8 56 109-169 19-78 (136)
26 cd01286 deoxycytidylate_deamin 20.2 3.5E+02 0.0075 22.2 6.1 27 139-167 67-93 (131)
No 1
>PRK06548 ribonuclease H; Provisional
Probab=99.88 E-value=3.1e-22 Score=172.40 Aligned_cols=125 Identities=18% Similarity=0.223 Sum_probs=95.1
Q ss_pred CceEEEecCCCCCC-C-cceEEEeCCeEeeeecCCCCchHHHHHHHHHHHHHHhhhCCCCeEEEEeccHHHHHHHhc---
Q psy5071 104 DSVLCFTDGSKTVN-S-TSCAYSIGNQVHAFKLNKVNSVLSSELMAILLCVKNLIFLPSTNFTLISDSMSALLAISN--- 178 (366)
Q Consensus 104 ~~~~iytDgS~~~~-~-~G~a~~~~~~~~~~~l~~~~s~~~AEl~AI~~aL~~~~~~~~~~i~I~sDs~~al~~l~~--- 178 (366)
..+.||||||+.++ | .|+|++..+..........+|++.|||.|++.||+.+.. ....|.|+|||++|++.+..
T Consensus 4 ~~~~IytDGa~~gnpg~~G~g~~~~~~~~~~g~~~~~TNnraEl~Aii~aL~~~~~-~~~~v~I~TDS~yvi~~i~~W~~ 82 (161)
T PRK06548 4 NEIIAATDGSSLANPGPSGWAWYVDENTWDSGGWDIATNNIAELTAVRELLIATRH-TDRPILILSDSKYVINSLTKWVY 82 (161)
T ss_pred CEEEEEEeeccCCCCCceEEEEEEeCCcEEccCCCCCCHHHHHHHHHHHHHHhhhc-CCceEEEEeChHHHHHHHHHHHH
Confidence 45899999999954 3 678866543221111124689999999999999986643 34579999999999999993
Q ss_pred ------CCCCch--H-HHHHHHHHHHHHhcCCcceEEEecccCCCccchhHHHHHcCcccC
Q psy5071 179 ------CKNDHP--L-VSLVYTTWLEAKDCGKNLNFVWCPSHCGITGNELVDIAARNPITN 230 (366)
Q Consensus 179 ------~~~~s~--~-~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~A~~~ 230 (366)
+...++ + -+++|+.+.++... ..|+|.|||||+|++|||.||+||++|+..
T Consensus 83 ~Wk~~gWk~s~G~pV~N~dL~~~l~~l~~~-~~v~~~wVkgHsg~~gNe~aD~LA~~aa~~ 142 (161)
T PRK06548 83 SWKMRKWRKADGKPVLNQEIIQEIDSLMEN-RNIRMSWVNAHTGHPLNEAADSLARQAANN 142 (161)
T ss_pred HHHHCCCcccCCCccccHHHHHHHHHHHhc-CceEEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 333333 3 36777888777544 479999999999999999999999999864
No 2
>PRK08719 ribonuclease H; Reviewed
Probab=99.88 E-value=4.8e-22 Score=169.63 Aligned_cols=121 Identities=18% Similarity=0.181 Sum_probs=92.3
Q ss_pred CceEEEecCCCCCCC-----cceEEEe--CC--eE--eeeecCCCCchHHHHHHHHHHHHHHhhhCCCCeEEEEeccHHH
Q psy5071 104 DSVLCFTDGSKTVNS-----TSCAYSI--GN--QV--HAFKLNKVNSVLSSELMAILLCVKNLIFLPSTNFTLISDSMSA 172 (366)
Q Consensus 104 ~~~~iytDgS~~~~~-----~G~a~~~--~~--~~--~~~~l~~~~s~~~AEl~AI~~aL~~~~~~~~~~i~I~sDs~~a 172 (366)
..++||||||+.+++ .|+|++. .+ .. .+..+....|++.|||.|+..||+.+... ..|+|||+++
T Consensus 3 ~~~~iYtDGs~~~n~~~~~~~G~G~vv~~~~~~~~~~~~~~~~~~~Tnn~aEl~A~~~aL~~~~~~----~~i~tDS~yv 78 (147)
T PRK08719 3 ASYSIYIDGAAPNNQHGCVRGGIGLVVYDEAGEIVDEQSITVNRYTDNAELELLALIEALEYARDG----DVIYSDSDYC 78 (147)
T ss_pred ceEEEEEecccCCCCCCCCCcEEEEEEEeCCCCeeEEEEecCCCCccHHHHHHHHHHHHHHHcCCC----CEEEechHHH
Confidence 468999999998543 3777653 22 12 33445556899999999999999998653 4899999999
Q ss_pred HHHH--------hcCCCCch---H-HHHHHHHHHHHHhcCCcceEEEecccCCCccchhHHHHHcCccc
Q psy5071 173 LLAI--------SNCKNDHP---L-VSLVYTTWLEAKDCGKNLNFVWCPSHCGITGNELVDIAARNPIT 229 (366)
Q Consensus 173 l~~l--------~~~~~~s~---~-~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~A~~ 229 (366)
+++| ++.+..+. + -.++|+.+..+.. ...|+|.|||||+|++|||.||+||++|++
T Consensus 79 i~~i~~~~~~W~~~~w~~s~g~~v~n~dl~~~i~~l~~-~~~i~~~~VkgH~g~~~Ne~aD~lA~~a~~ 146 (147)
T PRK08719 79 VRGFNEWLDTWKQKGWRKSDKKPVANRDLWQQVDELRA-RKYVEVEKVTAHSGIEGNEAADMLAQAAAE 146 (147)
T ss_pred HHHHHHHHHHHHhCCcccCCCcccccHHHHHHHHHHhC-CCcEEEEEecCCCCChhHHHHHHHHHHHhh
Confidence 9999 45554332 1 2556677766644 567999999999999999999999999875
No 3
>PF00075 RNase_H: RNase H; InterPro: IPR002156 The RNase H domain is responsible for hydrolysis of the RNA portion of RNA x DNA hybrids, and this activity requires the presence of divalent cations (Mg2+ or Mn2+) that bind its active site. This domain is a part of a large family of homologous RNase H enzymes of which the RNase HI protein from Escherichia coli is the best characterised []. Secondary structure predictions for the enzymes from E. coli, yeast, human liver and diverse retroviruses (such as Rous sarcoma virus and the Foamy viruses) supported, in every case, the five beta-strands (1 to 5) and four or five alpha-helices (A, B/C, D, E) that have been identified by crystallography in the RNase H domain of Human immunodeficiency virus 1 (HIV-1) reverse transcriptase and in E. coli RNase H []. Reverse transcriptase (RT) is a modular enzyme carrying polymerase and ribonuclease H (RNase H) activities in separable domains. Reverse transcriptase (RT) converts the single-stranded RNA genome of a retrovirus into a double-stranded DNA copy for integration into the host genome. This process requires ribonuclease H as well as RNA- and DNA-directed DNA polymerase activities. Retroviral RNase H is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. Bacterial RNase H 3.1.26.4 from EC catalyses endonucleolytic cleavage to 5'-phosphomonoester acting on RNA-DNA hybrids. The 3D structure of the RNase H domain from diverse bacteria and retroviruses has been solved [, , ]. All have four beta strands and four to five alpha helices. The E. coli RNase H1 protein binds a single Mg2+ ion cofactor in the active site of the enzyme. The divalent cation is bound by the carboxyl groups of four acidic residues, Asp-10, Glu-48, Asp-70, and Asp-134 []. The first three acidic residues are highly conserved in all bacterial and retroviral RNase H sequences. ; GO: 0003676 nucleic acid binding, 0004523 ribonuclease H activity; PDB: 3LP3_B 2KW4_A 3P1G_A 1RIL_A 2RPI_A 4EQJ_G 4EP2_B 3OTY_P 3U3G_D 2ZQB_D ....
Probab=99.87 E-value=3e-22 Score=167.58 Aligned_cols=117 Identities=27% Similarity=0.448 Sum_probs=87.9
Q ss_pred CceEEEecCCCCCC-C-cceEE-EeCCeEeeeecCCCCchHHHHHHHHHHHHHHhhhCCCCeEEEEeccHHHHHHHhc--
Q psy5071 104 DSVLCFTDGSKTVN-S-TSCAY-SIGNQVHAFKLNKVNSVLSSELMAILLCVKNLIFLPSTNFTLISDSMSALLAISN-- 178 (366)
Q Consensus 104 ~~~~iytDgS~~~~-~-~G~a~-~~~~~~~~~~l~~~~s~~~AEl~AI~~aL~~~~~~~~~~i~I~sDs~~al~~l~~-- 178 (366)
..+.||||||+..+ + .|+|+ +..+...+..++ ..+++.|||.||..||+ +.. ...++|+|||++++..+..
T Consensus 2 ~~~~iytDgS~~~~~~~~~~g~v~~~~~~~~~~~~-~~s~~~aEl~Ai~~AL~-~~~--~~~v~I~tDS~~v~~~l~~~~ 77 (132)
T PF00075_consen 2 KAIIIYTDGSCRPNPGKGGAGYVVWGGRNFSFRLG-GQSNNRAELQAIIEALK-ALE--HRKVTIYTDSQYVLNALNKWL 77 (132)
T ss_dssp TSEEEEEEEEECTTTTEEEEEEEEETTEEEEEEEE-SECHHHHHHHHHHHHHH-THS--TSEEEEEES-HHHHHHHHTHH
T ss_pred CcEEEEEeCCccCCCCceEEEEEEECCeEEEeccc-ccchhhhheehHHHHHH-Hhh--cccccccccHHHHHHHHHHhc
Confidence 46899999997732 2 35554 444544455566 88999999999999999 442 3899999999999998877
Q ss_pred ---CCCCc----hHHHHHHHHHHHHHhcCCcceEEEecccCCC-ccchhHHHHHcCcc
Q psy5071 179 ---CKNDH----PLVSLVYTTWLEAKDCGKNLNFVWCPSHCGI-TGNELVDIAARNPI 228 (366)
Q Consensus 179 ---~~~~s----~~~~~i~~~~~~l~~~~~~v~~~WVpgH~gi-~gNe~AD~lAk~A~ 228 (366)
.+... ++..+|++ +...+..|.|+|||||+|+ .|||.||+|||+|+
T Consensus 78 ~~~~~~~~~~~~~i~~~i~~----~~~~~~~v~~~~V~~H~~~~~~N~~aD~lAk~a~ 131 (132)
T PF00075_consen 78 HGNGWKKTSNGRPIKNEIWE----LLSRGIKVRFRWVPGHSGVPQGNERADRLAKEAA 131 (132)
T ss_dssp HHTTSBSCTSSSBHTHHHHH----HHHHSSEEEEEESSSSSSSHHHHHHHHHHHHHHH
T ss_pred cccccccccccccchhheee----ccccceEEeeeeccCcCCCchhHHHHHHHHHHhc
Confidence 33222 24444433 3346899999999999999 69999999999885
No 4
>COG0328 RnhA Ribonuclease HI [DNA replication, recombination, and repair]
Probab=99.86 E-value=2.4e-21 Score=164.22 Aligned_cols=127 Identities=21% Similarity=0.201 Sum_probs=101.6
Q ss_pred CceEEEecCCCCCC-C-cceEEEe--CCeEe--eeecCCCCchHHHHHHHHHHHHHHhhhCCCCeEEEEeccHHHHHHHh
Q psy5071 104 DSVLCFTDGSKTVN-S-TSCAYSI--GNQVH--AFKLNKVNSVLSSELMAILLCVKNLIFLPSTNFTLISDSMSALLAIS 177 (366)
Q Consensus 104 ~~~~iytDgS~~~~-~-~G~a~~~--~~~~~--~~~l~~~~s~~~AEl~AI~~aL~~~~~~~~~~i~I~sDs~~al~~l~ 177 (366)
..+.||||||+.++ | .|+|++. ++..+ +.... .+|++.||++|++.||+++.+.+...|.|+|||+++++.|.
T Consensus 2 ~~v~if~DGa~~gNpG~gG~g~vl~~~~~~~~~s~~~~-~tTNNraEl~A~i~AL~~l~~~~~~~v~l~tDS~yv~~~i~ 80 (154)
T COG0328 2 KKVEIFTDGACLGNPGPGGWGAVLRYGDGEKELSGGEG-RTTNNRAELRALIEALEALKELGACEVTLYTDSKYVVEGIT 80 (154)
T ss_pred CceEEEecCccCCCCCCceEEEEEEcCCceEEEeeeee-cccChHHHHHHHHHHHHHHHhcCCceEEEEecHHHHHHHHH
Confidence 35899999999954 3 5666543 33333 33334 89999999999999999999888899999999999999998
Q ss_pred cC---CCCc--------h-HHHHHHHHHHHHHhcCCcceEEEecccCCCccchhHHHHHcCcccCC
Q psy5071 178 NC---KNDH--------P-LVSLVYTTWLEAKDCGKNLNFVWCPSHCGITGNELVDIAARNPITNI 231 (366)
Q Consensus 178 ~~---~~~s--------~-~~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~A~~~~ 231 (366)
.+ +... + ...++|+++.++..+...|.+.|||||+|.++||.||+||+.|++..
T Consensus 81 ~w~~~w~~~~w~~~~~~pvkn~dl~~~~~~~~~~~~~v~~~WVkgH~g~~~NeraD~LA~~~~~~~ 146 (154)
T COG0328 81 RWIVKWKKNGWKTADKKPVKNKDLWEELDELLKRHELVFWEWVKGHAGHPENERADQLAREAARAA 146 (154)
T ss_pred HHHhhccccCccccccCccccHHHHHHHHHHHhhCCeEEEEEeeCCCCChHHHHHHHHHHHHHHhh
Confidence 43 1111 1 24577888888877777999999999999999999999999998754
No 5
>PRK00203 rnhA ribonuclease H; Reviewed
Probab=99.85 E-value=7.4e-21 Score=163.36 Aligned_cols=124 Identities=20% Similarity=0.206 Sum_probs=92.1
Q ss_pred ceEEEecCCCCCC-C-cceEEEe--CCeEeeee-cCCCCchHHHHHHHHHHHHHHhhhCCCCeEEEEeccHHHHHHHhcC
Q psy5071 105 SVLCFTDGSKTVN-S-TSCAYSI--GNQVHAFK-LNKVNSVLSSELMAILLCVKNLIFLPSTNFTLISDSMSALLAISNC 179 (366)
Q Consensus 105 ~~~iytDgS~~~~-~-~G~a~~~--~~~~~~~~-l~~~~s~~~AEl~AI~~aL~~~~~~~~~~i~I~sDs~~al~~l~~~ 179 (366)
.+.||||||+.++ + .|+|++. .+....+. .....|++.|||.|+..||+.+.. ...+.|+|||+++++.|..+
T Consensus 3 ~v~iytDGs~~~n~~~~g~g~v~~~~~~~~~~~~~~~~~TN~~aEL~Ai~~AL~~~~~--~~~v~I~tDS~yvi~~i~~w 80 (150)
T PRK00203 3 QVEIYTDGACLGNPGPGGWGAILRYKGHEKELSGGEALTTNNRMELMAAIEALEALKE--PCEVTLYTDSQYVRQGITEW 80 (150)
T ss_pred eEEEEEEecccCCCCceEEEEEEEECCeeEEEecCCCCCcHHHHHHHHHHHHHHHcCC--CCeEEEEECHHHHHHHHHHH
Confidence 4899999999854 3 5666543 33332222 134678999999999999998865 45799999999999999862
Q ss_pred --------CC-Cc--hH-HHHHHHHHHHHHhcCCcceEEEecccCCCccchhHHHHHcCcccCC
Q psy5071 180 --------KN-DH--PL-VSLVYTTWLEAKDCGKNLNFVWCPSHCGITGNELVDIAARNPITNI 231 (366)
Q Consensus 180 --------~~-~s--~~-~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~A~~~~ 231 (366)
+. .+ ++ -..+|+.+.++. ....|.|.|||||+|++||+.||+|||+|+...
T Consensus 81 ~~~Wk~~~~~~~~g~~v~n~dl~~~i~~l~-~~~~v~~~wV~~H~~~~~N~~AD~lA~~a~~~~ 143 (150)
T PRK00203 81 IHGWKKNGWKTADKKPVKNVDLWQRLDAAL-KRHQIKWHWVKGHAGHPENERCDELARAGAEEA 143 (150)
T ss_pred HHHHHHcCCcccCCCccccHHHHHHHHHHh-ccCceEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 21 11 22 244556666654 347899999999999999999999999998753
No 6
>cd06222 RnaseH RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. RNase H knockout mice lack mitochondrial DNA replication and die as embryos. The retroviral reverse transcriptase contains an RNase H domain that plays an important role in converting a single stranded retroviral genomic RNA into a dsDNA for integration into host chromosomes. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription.
Probab=99.75 E-value=2.3e-17 Score=134.86 Aligned_cols=122 Identities=20% Similarity=0.278 Sum_probs=95.8
Q ss_pred EEEecCCCCCC--CcceEEEeCC--eEeee---ecCCCCchHHHHHHHHHHHHHHhhhCCCCeEEEEeccHHHHHHHhcC
Q psy5071 107 LCFTDGSKTVN--STSCAYSIGN--QVHAF---KLNKVNSVLSSELMAILLCVKNLIFLPSTNFTLISDSMSALLAISNC 179 (366)
Q Consensus 107 ~iytDgS~~~~--~~G~a~~~~~--~~~~~---~l~~~~s~~~AEl~AI~~aL~~~~~~~~~~i~I~sDs~~al~~l~~~ 179 (366)
.+|||||...+ +.|+|++..+ ....+ ......+++.+|+.|+..||+++...+..++.|++||+.++..+.+.
T Consensus 1 ~~~~Dgs~~~~~~~~g~g~v~~~~~~~~~~~~~~~~~~~s~~~aEl~al~~al~~~~~~~~~~i~i~~Ds~~~~~~~~~~ 80 (130)
T cd06222 1 VIYTDGSCRGNPGPAGAGVVLRDPGGEVLLSGGLLGGNTTNNRAELLALIEALELALELGGKKVNIYTDSQYVINALTGW 80 (130)
T ss_pred CEEecccCCCCCCceEEEEEEEeCCCeEEEeccccCCCCcHHHHHHHHHHHHHHHHHhCCCceEEEEECHHHHHHHhhcc
Confidence 48999999865 4777766432 22111 12257899999999999999999888899999999999999999987
Q ss_pred CC-CchHHHHHHHHHHHHHhcCCcceEEEecccCCCccchhHHHHHcCcc
Q psy5071 180 KN-DHPLVSLVYTTWLEAKDCGKNLNFVWCPSHCGITGNELVDIAARNPI 228 (366)
Q Consensus 180 ~~-~s~~~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~A~ 228 (366)
.. .......+++.+..+...+..+.|.|||+|+|+.+|+.||.|||.|.
T Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~i~~v~~h~~~~~n~~ad~la~~~~ 130 (130)
T cd06222 81 YEGKPVKNVDLWQRLLALLKRFHKVRFEWVPGHSGIEGNERADALAKEAA 130 (130)
T ss_pred ccCCChhhHHHHHHHHHHHhCCCeEEEEEcCCCCCCcchHHHHHHHHhhC
Confidence 65 22234444466666556789999999999999999999999999873
No 7
>KOG3752|consensus
Probab=99.70 E-value=5.7e-17 Score=153.16 Aligned_cols=127 Identities=20% Similarity=0.187 Sum_probs=100.4
Q ss_pred CCceEEEecCCCCCCC-----cceEEEeCCe---EeeeecC-CCCchHHHHHHHHHHHHHHhhhCCCCeEEEEeccHHHH
Q psy5071 103 SDSVLCFTDGSKTVNS-----TSCAYSIGNQ---VHAFKLN-KVNSVLSSELMAILLCVKNLIFLPSTNFTLISDSMSAL 173 (366)
Q Consensus 103 ~~~~~iytDgS~~~~~-----~G~a~~~~~~---~~~~~l~-~~~s~~~AEl~AI~~aL~~~~~~~~~~i~I~sDs~~al 173 (366)
.+.+++|||||+..+| +|+||+.++. ..++.+. ..++++.|||.||..||+.+.+....+++|.|||++++
T Consensus 210 ~~~~vvytDGS~~~ng~~~~~AGyGvywg~~~e~N~s~pv~~g~qtNnrAEl~Av~~ALkka~~~~~~kv~I~TDS~~~i 289 (371)
T KOG3752|consen 210 IEIQVVYTDGSSSGNGRKSSRAGYGVYWGPGHELNVSGPLAGGRQTNNRAELIAAIEALKKARSKNINKVVIRTDSEYFI 289 (371)
T ss_pred ccceEEEecCccccCCCCCCcceeEEeeCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhcCCCcEEEEechHHHH
Confidence 3448999999998654 7999998654 4577774 89999999999999999999988888999999999999
Q ss_pred HHHhcCCCC-----------ch----H--HHHHHHHHHHHHh--cCCcceEEEecccCCCccchhHHHHHcCccc
Q psy5071 174 LAISNCKND-----------HP----L--VSLVYTTWLEAKD--CGKNLNFVWCPSHCGITGNELVDIAARNPIT 229 (366)
Q Consensus 174 ~~l~~~~~~-----------s~----~--~~~i~~~~~~l~~--~~~~v~~~WVpgH~gi~gNe~AD~lAk~A~~ 229 (366)
++|+.+.+. ++ + .+..+..+.+|.+ ++..|.+.||+||.|+.|||+||.||+++..
T Consensus 290 ~~l~~wv~~~k~~~~k~~~~~~~i~~~v~n~~~~~e~~~l~q~~~~~~vq~~~V~Gh~gi~gne~Ad~lARkgs~ 364 (371)
T KOG3752|consen 290 NSLTLWVQGWKKNGWKTSNGSDRICAYVKNQDFFNELDELEQEISNKKVQQEYVGGHSGILGNEMADALARKGST 364 (371)
T ss_pred HHHHHHHhhhccCccccccCCCccceeeecchHHHHHHHHHhhhccCceEEEEecCcCCcchHHHHHHHHhhhhh
Confidence 999865331 11 0 1122234444432 4689999999999999999999999998854
No 8
>PRK13907 rnhA ribonuclease H; Provisional
Probab=99.68 E-value=2.3e-16 Score=131.73 Aligned_cols=120 Identities=18% Similarity=0.143 Sum_probs=94.0
Q ss_pred eEEEecCCCCCC--CcceEEEeCC--eEeeee-cCCCCchHHHHHHHHHHHHHHhhhCCCCeEEEEeccHHHHHHHhcCC
Q psy5071 106 VLCFTDGSKTVN--STSCAYSIGN--QVHAFK-LNKVNSVLSSELMAILLCVKNLIFLPSTNFTLISDSMSALLAISNCK 180 (366)
Q Consensus 106 ~~iytDgS~~~~--~~G~a~~~~~--~~~~~~-l~~~~s~~~AEl~AI~~aL~~~~~~~~~~i~I~sDs~~al~~l~~~~ 180 (366)
+.||||||+..+ ..|+|++..+ .....+ .....++..||+.|++.||+.+...+..++.|+|||+.++..+.+.+
T Consensus 2 ~~iy~DGa~~~~~g~~G~G~vi~~~~~~~~~~~~~~~~tn~~AE~~All~aL~~a~~~g~~~v~i~sDS~~vi~~~~~~~ 81 (128)
T PRK13907 2 IEVYIDGASKGNPGPSGAGVFIKGVQPAVQLSLPLGTMSNHEAEYHALLAALKYCTEHNYNIVSFRTDSQLVERAVEKEY 81 (128)
T ss_pred EEEEEeeCCCCCCCccEEEEEEEECCeeEEEEecccccCCcHHHHHHHHHHHHHHHhCCCCEEEEEechHHHHHHHhHHH
Confidence 689999999853 3677766432 222222 12467899999999999999999988889999999999999999866
Q ss_pred CCchHHHHHHHHHHHHHhcCCcceEEEecccCCCccchhHHHHHcCccc
Q psy5071 181 NDHPLVSLVYTTWLEAKDCGKNLNFVWCPSHCGITGNELVDIAARNPIT 229 (366)
Q Consensus 181 ~~s~~~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~A~~ 229 (366)
....-...+++.+..+......+.|.|||. ++|+.||.||+.|..
T Consensus 82 ~~~~~~~~l~~~~~~l~~~f~~~~~~~v~r----~~N~~Ad~LA~~a~~ 126 (128)
T PRK13907 82 AKNKMFAPLLEEALQYIKSFDLFFIKWIPS----SQNKVADELARKAIL 126 (128)
T ss_pred hcChhHHHHHHHHHHHHhcCCceEEEEcCc----hhchhHHHHHHHHHh
Confidence 443334556677777766778888999996 599999999998864
No 9
>PRK07708 hypothetical protein; Validated
Probab=99.53 E-value=1.5e-13 Score=124.69 Aligned_cols=127 Identities=12% Similarity=0.020 Sum_probs=92.0
Q ss_pred CCCceEEEecCCCCC--CCcceEEEe--CCe--Ee----eeecCCCCchHHHHHHHHHHHHHHhhhCCCCe--EEEEecc
Q psy5071 102 YSDSVLCFTDGSKTV--NSTSCAYSI--GNQ--VH----AFKLNKVNSVLSSELMAILLCVKNLIFLPSTN--FTLISDS 169 (366)
Q Consensus 102 ~~~~~~iytDgS~~~--~~~G~a~~~--~~~--~~----~~~l~~~~s~~~AEl~AI~~aL~~~~~~~~~~--i~I~sDs 169 (366)
.++.+++|+|||... ++.|+|++. .+. .. ...++...+++.||+.|++.||+.+...+.+. |.|++||
T Consensus 70 ep~~~~vY~DGs~~~n~g~aG~GvVI~~~~g~~~~~~~~~~~l~~~~TNN~AEy~Ali~aL~~A~e~g~~~~~V~I~~DS 149 (219)
T PRK07708 70 EPHEILVYFDGGFDKETKLAGLGIVIYYKQGNKRYRIRRNAYIEGIYDNNEAEYAALYYAMQELEELGVKHEPVTFRGDS 149 (219)
T ss_pred CCCcEEEEEeeccCCCCCCcEEEEEEEECCCCEEEEEEeeccccccccCcHHHHHHHHHHHHHHHHcCCCcceEEEEecc
Confidence 345799999999874 346777543 222 11 12345568999999999999999999876554 8999999
Q ss_pred HHHHHHHhcCCCC-chHHHHHHHHHHHHHhc-CCcceEEEecccCCCccchhHHHHHcCcccCCC
Q psy5071 170 MSALLAISNCKND-HPLVSLVYTTWLEAKDC-GKNLNFVWCPSHCGITGNELVDIAARNPITNIT 232 (366)
Q Consensus 170 ~~al~~l~~~~~~-s~~~~~i~~~~~~l~~~-~~~v~~~WVpgH~gi~gNe~AD~lAk~A~~~~~ 232 (366)
+.+++.+.+.+.. ++..+..+..+.++... ...+.+.||| ...|+.||+||+.|++...
T Consensus 150 qlVi~qi~g~wk~~~~~l~~y~~~i~~l~~~~~l~~~~~~Vp----R~~N~~AD~LAk~Al~~~~ 210 (219)
T PRK07708 150 QVVLNQLAGEWPCYDEHLNHWLDRIEQKLKQLKLTPVYEPIS----RKQNKEADQLATQALEGTV 210 (219)
T ss_pred HHHHHHhCCCceeCChhHHHHHHHHHHHHhhCCceEEEEECC----chhhhHHHHHHHHHHhcCC
Confidence 9999999987654 33344444555544322 3357788998 5789999999999998543
No 10
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=99.42 E-value=1.7e-12 Score=127.71 Aligned_cols=121 Identities=17% Similarity=0.164 Sum_probs=93.8
Q ss_pred ceEEEecCCCCCC-C-cceEEEe--CC-e-E-e--eeecCCCCchHHHHHHHHHHHHHHhhhCCCCeEEEEeccHHHHHH
Q psy5071 105 SVLCFTDGSKTVN-S-TSCAYSI--GN-Q-V-H--AFKLNKVNSVLSSELMAILLCVKNLIFLPSTNFTLISDSMSALLA 175 (366)
Q Consensus 105 ~~~iytDgS~~~~-~-~G~a~~~--~~-~-~-~--~~~l~~~~s~~~AEl~AI~~aL~~~~~~~~~~i~I~sDs~~al~~ 175 (366)
.+.||||||+.++ | .|+|++. .+ . . . ...++ ..+++.||+.|++.||+.+.+.+...+.|++||+.+++.
T Consensus 2 ~~~i~~DGa~~~n~g~aG~G~vi~~~~~~~~~~~~~~~~~-~~tnn~AE~~All~gL~~a~~~g~~~v~i~~DS~lvi~~ 80 (372)
T PRK07238 2 KVVVEADGGSRGNPGPAGYGAVVWDADRGEVLAERAEAIG-RATNNVAEYRGLIAGLEAAAELGATEVEVRMDSKLVVEQ 80 (372)
T ss_pred eEEEEecCCCCCCCCceEEEEEEEeCCCCcEEEEeecccC-CCCchHHHHHHHHHHHHHHHhCCCCeEEEEeCcHHHHHH
Confidence 3789999999964 3 6777654 22 1 1 1 22333 678899999999999999999888999999999999999
Q ss_pred HhcCCC-CchHHHHHHHHHHHHHhcCCcceEEEecccCCCccchhHHHHHcCcccC
Q psy5071 176 ISNCKN-DHPLVSLVYTTWLEAKDCGKNLNFVWCPSHCGITGNELVDIAARNPITN 230 (366)
Q Consensus 176 l~~~~~-~s~~~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~A~~~ 230 (366)
+.+.+. ++.-...++..+..+..+...+.+.|||. .+|+.||.||+.|...
T Consensus 81 i~~~~~~~~~~l~~~~~~i~~l~~~f~~~~i~~v~r----~~N~~AD~LA~~a~~~ 132 (372)
T PRK07238 81 MSGRWKVKHPDMKPLAAQARELASQFGRVTYTWIPR----ARNAHADRLANEAMDA 132 (372)
T ss_pred hCCCCccCChHHHHHHHHHHHHHhcCCceEEEECCc----hhhhHHHHHHHHHHHh
Confidence 998664 33333444466667666778999999995 7899999999999764
No 11
>PF13456 RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EHG_A 3HST_B.
Probab=99.23 E-value=3e-11 Score=93.13 Aligned_cols=85 Identities=19% Similarity=0.114 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHHHHHhhhCCCCeEEEEeccHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCcceEEEecccCCCccchh
Q psy5071 140 VLSSELMAILLCVKNLIFLPSTNFTLISDSMSALLAISNCKNDHPLVSLVYTTWLEAKDCGKNLNFVWCPSHCGITGNEL 219 (366)
Q Consensus 140 ~~~AEl~AI~~aL~~~~~~~~~~i~I~sDs~~al~~l~~~~~~s~~~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~ 219 (366)
+..||+.|+..||+++.+.+..+|.|.|||+.++..|.+..........++..+..+......+.+.||| .++|..
T Consensus 1 ~~~aE~~al~~al~~a~~~g~~~i~v~sDs~~vv~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~----r~~N~~ 76 (87)
T PF13456_consen 1 PLEAEALALLEALQLAWELGIRKIIVESDSQLVVDAINGRSSSRSELRPLIQDIRSLLDRFWNVSVSHIP----REQNKV 76 (87)
T ss_dssp HHHHHHHHHHHHHHHHHCCT-SCEEEEES-HHHHHHHTTSS---SCCHHHHHHHHHHHCCCSCEEEEE------GGGSHH
T ss_pred CcHHHHHHHHHHHHHHHHCCCCEEEEEecCccccccccccccccccccccchhhhhhhccccceEEEEEC----hHHhHH
Confidence 4689999999999999999999999999999999999987543223455557777777788999999999 799999
Q ss_pred HHHHHcCcc
Q psy5071 220 VDIAARNPI 228 (366)
Q Consensus 220 AD~lAk~A~ 228 (366)
||.|||.|.
T Consensus 77 A~~LA~~a~ 85 (87)
T PF13456_consen 77 ADALAKFAL 85 (87)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999875
No 12
>PF13966 zf-RVT: zinc-binding in reverse transcriptase
Probab=96.30 E-value=0.0025 Score=49.07 Aligned_cols=41 Identities=29% Similarity=0.498 Sum_probs=29.8
Q ss_pred eeecCcccc-h--hhcccCCCCCCCcc-CCC-CCCcceeec-CcccH
Q psy5071 291 RLRIGHTRV-T--HDHLFKRDPRPTCG-CGD-TLTVDHIFN-CRTHL 331 (366)
Q Consensus 291 qlRTGH~~l-~--h~~~~~~~~~~~C~-CG~-~etv~HiL~-Cp~~~ 331 (366)
--|.-|.++ + -+.+.+...++.|. ||. .||++|+|+ ||...
T Consensus 37 ~W~~~~~rL~t~~~l~~r~~~~~~~C~~C~~~~Et~~Hlf~~C~~a~ 83 (86)
T PF13966_consen 37 LWRALHNRLPTKDNLQRRGIQVDPICPLCGNEEETIEHLFFHCPFAR 83 (86)
T ss_pred eeeeccccchhhhhhhccCCccCCccccCCCccccccceeccCcCcc
Confidence 344455555 2 24445567789999 997 999999999 99764
No 13
>PF05380 Peptidase_A17: Pao retrotransposon peptidase ; InterPro: IPR008042 This signature identifies members of the Pao retrotransposon family.
Probab=87.20 E-value=2.6 Score=36.25 Aligned_cols=52 Identities=19% Similarity=0.171 Sum_probs=34.7
Q ss_pred CceEEEecCCCCCCCcceEEEeCC---eEeee-------ec--CCCCchHHHHHHHHHHHHHHhhh
Q psy5071 104 DSVLCFTDGSKTVNSTSCAYSIGN---QVHAF-------KL--NKVNSVLSSELMAILLCVKNLIF 157 (366)
Q Consensus 104 ~~~~iytDgS~~~~~~G~a~~~~~---~~~~~-------~l--~~~~s~~~AEl~AI~~aL~~~~~ 157 (366)
..+++|+|+|. .+.|+++|... ..... ++ -...|+-.-||.|+..|.+++..
T Consensus 80 ~~L~~F~DAS~--~aygavvYlr~~~~~~~~~~ll~aKsrv~P~k~~tIPRlEL~a~~l~~~l~~~ 143 (159)
T PF05380_consen 80 VELHVFCDASE--SAYGAVVYLRSYSDGSVQVRLLFAKSRVAPLKTVTIPRLELLAALLGVRLANT 143 (159)
T ss_pred eeeeEeecccc--cceeeEeEeeeccCCceeeeeeeecccccCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 46899999994 55676665321 11111 11 13459999999999999988753
No 14
>PF00336 DNA_pol_viral_C: DNA polymerase (viral) C-terminal domain; InterPro: IPR001462 This domain is at the C terminus of hepatitis B-type viruses P proteins and represents a functional domain that controls the RNase H activities of the protein. The domain is always associated with IPR000201 from INTERPRO and .; GO: 0004523 ribonuclease H activity
Probab=76.23 E-value=3.4 Score=36.83 Aligned_cols=62 Identities=23% Similarity=0.154 Sum_probs=39.9
Q ss_pred CCceEEEecCCCCCCCcceEEEeCCeEeeeecCCCCchHHHHHHHHHHHHHHhhhCCCCeEEEEeccHHHH
Q psy5071 103 SDSVLCFTDGSKTVNSTSCAYSIGNQVHAFKLNKVNSVLSSELMAILLCVKNLIFLPSTNFTLISDSMSAL 173 (366)
Q Consensus 103 ~~~~~iytDgS~~~~~~G~a~~~~~~~~~~~l~~~~s~~~AEl~AI~~aL~~~~~~~~~~i~I~sDs~~al 173 (366)
..--.||+|+.-. |.|+..+.+...+.+...-.+.+|||.|...|.-+.. .++ |.|||..|+
T Consensus 92 ~~lc~VfaDATpT----gwgi~i~~~~~~~Tfs~~l~IhtaELlaaClAr~~~~----~r~-l~tDnt~Vl 153 (245)
T PF00336_consen 92 PGLCQVFADATPT----GWGISITGQRMRGTFSKPLPIHTAELLAACLARLMSG----ARC-LGTDNTVVL 153 (245)
T ss_pred CCCCceeccCCCC----cceeeecCceeeeeecccccchHHHHHHHHHHHhccC----CcE-EeecCcEEE
Confidence 3456788888753 3343344444444443455789999999988876552 234 999998664
No 15
>KOG1812|consensus
Probab=43.06 E-value=62 Score=32.13 Aligned_cols=44 Identities=16% Similarity=0.153 Sum_probs=36.4
Q ss_pred CCchHHHHHHHHHHHHHHhhhCCCCeEEEEeccHHHHHHHhcCC
Q psy5071 137 VNSVLSSELMAILLCVKNLIFLPSTNFTLISDSMSALLAISNCK 180 (366)
Q Consensus 137 ~~s~~~AEl~AI~~aL~~~~~~~~~~i~I~sDs~~al~~l~~~~ 180 (366)
..+...||++|+..+|..+.+.+...+.+++|+.-..+.+....
T Consensus 46 ~~~~~~ae~~al~~~l~ea~~~~~~~~~~~~d~~~~~~~v~~~~ 89 (384)
T KOG1812|consen 46 SITPLEAELMALKRGLTEALELGLNHIVIYCDDELIYESVAGRE 89 (384)
T ss_pred ccchhhHHHHHHhhccHHHHhhccccceEecccHHHHHHHhhhh
Confidence 37789999999999999999999999999999766666554443
No 16
>PF05741 zf-nanos: Nanos RNA binding domain; InterPro: IPR024161 Nanos is a highly conserved RNA-binding protein in higher eukaryotes and functions as a key regulatory protein in translational control using a 3' untranslated region during the development and maintenance of germ cells. Nanos comprises a non-conserved amino-terminus and highly conserved carboxy- terminal regions. The C-terminal region has two conserved Cys-Cys-His-Cys (CCHC)-type zinc-finger motifs that are indispensable for nanos function [, , ]. The structure of the nanos-type zinc finger is composed of two independent zinc-finger (ZF) lobes, the N-terminal ZF1 and the C-terminal ZF2, which are connected by a linker helix []. These lobes create a large cleft. Zinc ions in ZF1 and ZF2 are bound to the CCHC motif by tetrahedral coordination.; PDB: 3ALR_B.
Probab=30.94 E-value=19 Score=25.24 Aligned_cols=19 Identities=32% Similarity=0.669 Sum_probs=7.9
Q ss_pred CCcc-CCCCCCcceeec-Ccc
Q psy5071 311 PTCG-CGDTLTVDHIFN-CRT 329 (366)
Q Consensus 311 ~~C~-CG~~etv~HiL~-Cp~ 329 (366)
-.|+ ||+...-.|... ||+
T Consensus 34 y~Cp~CgAtGd~AHT~~yCP~ 54 (55)
T PF05741_consen 34 YVCPICGATGDNAHTIKYCPK 54 (55)
T ss_dssp ---TTT---GGG---GGG-TT
T ss_pred CcCCCCcCcCccccccccCcC
Confidence 4699 999888899999 996
No 17
>COG3341 Predicted double-stranded RNA/RNA-DNA hybrid binding protein [General function prediction only]
Probab=29.19 E-value=47 Score=30.04 Aligned_cols=92 Identities=13% Similarity=0.018 Sum_probs=60.8
Q ss_pred CCchHHHHHHHHHHHHHHhhhCCCCeEEE-E----eccHHHHHHHhcCCC-CchHHHHHHHHHHHHHhcCCcceEEEecc
Q psy5071 137 VNSVLSSELMAILLCVKNLIFLPSTNFTL-I----SDSMSALLAISNCKN-DHPLVSLVYTTWLEAKDCGKNLNFVWCPS 210 (366)
Q Consensus 137 ~~s~~~AEl~AI~~aL~~~~~~~~~~i~I-~----sDs~~al~~l~~~~~-~s~~~~~i~~~~~~l~~~~~~v~~~WVpg 210 (366)
..++-.+|.+|++.+|+.+.....+...| + .||++...-+.+-.- ...+... +.+.. ...+....+.|+-.
T Consensus 105 ~~~n~s~d~la~ly~~~~~~~~~nrk~~i~y~~~~~ds~a~~k~~k~~~~~k~~~~~~--~e~~~-~~~~v~h~~k~i~~ 181 (225)
T COG3341 105 IKSNDSGDVLAKLYGLRYEVPLDNRKSVINYLTPGNDSWAYFKYVKDKCETKVNLLKD--REFFS-IGKGVFHDEKDINI 181 (225)
T ss_pred cccCchHHHHHHhccccccccccCccceeeccCCcchhHHHHHHHhhhhhhHHHHHHh--HHhhh-ccchhhhhhhhccc
Confidence 34567799999999999888765555555 6 799999888876542 2211111 11111 11234566788889
Q ss_pred cCCCccchhHHHHHcCcccCC
Q psy5071 211 HCGITGNELVDIAARNPITNI 231 (366)
Q Consensus 211 H~gi~gNe~AD~lAk~A~~~~ 231 (366)
|.++.-+..++.++..+....
T Consensus 182 ~~~~~~~~~~~s~~~~~~k~~ 202 (225)
T COG3341 182 HIWIFESKKGNSHVYNTSKKE 202 (225)
T ss_pred ccccchhhhhhhhhhchhhhh
Confidence 999888888888887666543
No 18
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protei
Probab=28.65 E-value=2.2e+02 Score=22.43 Aligned_cols=52 Identities=15% Similarity=0.033 Sum_probs=32.2
Q ss_pred CcceEEEeC-CeEeeeec----CCCCchHHHHHHHHHHHHHHhhhCCCCeEEEEecc
Q psy5071 118 STSCAYSIG-NQVHAFKL----NKVNSVLSSELMAILLCVKNLIFLPSTNFTLISDS 169 (366)
Q Consensus 118 ~~G~a~~~~-~~~~~~~l----~~~~s~~~AEl~AI~~aL~~~~~~~~~~i~I~sDs 169 (366)
.+|+.++.. +...+... ........||..||..+.+..........++|+.-
T Consensus 18 ~vgaviv~~~~~ii~~g~n~~~~~~~~~~HAE~~ai~~~~~~~~~~~~~~~~ly~t~ 74 (109)
T cd01285 18 PFGAVIVDDDGKVIARGHNRVEQDGDPTAHAEIVAIRNAARRLGSYLLSGCTLYTTL 74 (109)
T ss_pred cEEEEEEeCCCEEEEEEeCCCCCCCCCcccHHHHHHHHHHHHhCCCccCCeEEEEeC
Confidence 477777766 33322222 12345677999999998877544335567777753
No 19
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=26.39 E-value=3.4e+02 Score=24.34 Aligned_cols=67 Identities=10% Similarity=0.028 Sum_probs=45.2
Q ss_pred HHHHHHHHhhhCCCCeEEEEeccHHHHHHHhcCCCCc--------hH-HHHHHHHHHHHHhcCCcceEEEecccCCCcc
Q psy5071 147 AILLCVKNLIFLPSTNFTLISDSMSALLAISNCKNDH--------PL-VSLVYTTWLEAKDCGKNLNFVWCPSHCGITG 216 (366)
Q Consensus 147 AI~~aL~~~~~~~~~~i~I~sDs~~al~~l~~~~~~s--------~~-~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~g 216 (366)
++..||.++.....-.+.-|++...-+........+- ++ ..++.+ .|...+...-+..+-||.+|+-
T Consensus 15 ~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~~~pGclllDvrMPg~sGlelq~---~L~~~~~~~PVIfiTGhgDIpm 90 (202)
T COG4566 15 SVRDALAFLLESAGFQVKCFASAEEFLAAAPLDRPGCLLLDVRMPGMSGLELQD---RLAERGIRLPVIFLTGHGDIPM 90 (202)
T ss_pred HHHHHHHHHHHhCCceeeeecCHHHHHhhccCCCCCeEEEecCCCCCchHHHHH---HHHhcCCCCCEEEEeCCCChHH
Confidence 5677888888777778889999988887743333321 11 223312 2345788888889999999983
No 20
>PRK10860 tRNA-specific adenosine deaminase; Provisional
Probab=25.82 E-value=1.7e+02 Score=25.41 Aligned_cols=51 Identities=16% Similarity=0.036 Sum_probs=29.7
Q ss_pred CcceEEEeCCeEeeeec----CCCCchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Q psy5071 118 STSCAYSIGNQVHAFKL----NKVNSVLSSELMAILLCVKNLIFLPSTNFTLISD 168 (366)
Q Consensus 118 ~~G~a~~~~~~~~~~~l----~~~~s~~~AEl~AI~~aL~~~~~~~~~~i~I~sD 168 (366)
.+|+.++..+...+... +.......||..||..|.+.+........++|+-
T Consensus 34 pvGAVIV~~g~IIa~g~N~~~~~~d~~~HAEi~Ai~~a~~~~~~~~l~g~tlY~T 88 (172)
T PRK10860 34 PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVLQNYRLLDATLYVT 88 (172)
T ss_pred CEEEEEEeCCEEEEEeeCCCCCCCCCccCHHHHHHHHHHHhcCCCCcCCcEEEee
Confidence 47887776554332221 1222245699999999887654433345666654
No 21
>PF04863 EGF_alliinase: Alliinase EGF-like domain; InterPro: IPR006947 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A.
Probab=24.50 E-value=15 Score=25.63 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=11.8
Q ss_pred eecCcccchhhcccCCCCCCCccCCC
Q psy5071 292 LRIGHTRVTHDHLFKRDPRPTCGCGD 317 (366)
Q Consensus 292 lRTGH~~l~h~~~~~~~~~~~C~CG~ 317 (366)
--+|||+. |+-.+-.+..|.|+|..
T Consensus 18 ~CSGHGr~-flDg~~~dG~p~CECn~ 42 (56)
T PF04863_consen 18 SCSGHGRA-FLDGLIADGSPVCECNS 42 (56)
T ss_dssp --TTSEE---TTS-EETTEE--EE-T
T ss_pred CcCCCCee-eeccccccCCccccccC
Confidence 45799997 33333355679999876
No 22
>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=22.11 E-value=1.9e+02 Score=24.56 Aligned_cols=51 Identities=14% Similarity=0.064 Sum_probs=29.5
Q ss_pred CcceEEEeCCe-Eeeee----cCCCCchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Q psy5071 118 STSCAYSIGNQ-VHAFK----LNKVNSVLSSELMAILLCVKNLIFLPSTNFTLISD 168 (366)
Q Consensus 118 ~~G~a~~~~~~-~~~~~----l~~~~s~~~AEl~AI~~aL~~~~~~~~~~i~I~sD 168 (366)
.+|+.++..+. ..... .....-.-.||+.||..|.+.+........++++-
T Consensus 29 PvGaviV~~~~~ii~~~~N~~~~~~dptaHAEi~air~a~~~~~~~~l~~~tlyvT 84 (152)
T COG0590 29 PVGAVIVDADGEIIARGHNRREEDNDPTAHAEILAIRAAAETLGNYRLKDCTLYVT 84 (152)
T ss_pred CEEEEEEcCCCCEEEEecCccccCCCccccHHHHHHHHHHHhhCCCCcCCcEEEEe
Confidence 47777777332 22211 11222233699999999999886544455555554
No 23
>KOG2212|consensus
Probab=21.68 E-value=70 Score=31.23 Aligned_cols=53 Identities=19% Similarity=0.358 Sum_probs=32.7
Q ss_pred CcccCCCCCCCCCCCCCCCcccccccccCCCCCChHHHHHHHHHHHhccCCCceEEEecCC
Q psy5071 53 DSEFVPFTRPRPPWSFQVPSIDFSLHLDNKDNIPPIVFQQHFHDLVTNKYSDSVLCFTDGS 113 (366)
Q Consensus 53 ~e~i~p~~~p~pPW~~~~~~i~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~iytDgS 113 (366)
+|.+.-+. |.-||..|.++|...|+.... + .+.|.+++..=..-++.||+|.=
T Consensus 64 nEn~~~~~-~~rPWWeRYQPvSYKL~tRSG---N----E~eF~dMV~RCN~VGVRiyVDvv 116 (504)
T KOG2212|consen 64 NENVAIHN-PFRPWWERYQPVSYKLCTRSG---N----EDEFRDMVTRCNNVGVRIYVDAV 116 (504)
T ss_pred chhhhhcC-CCCCceeecccceEEeeccCC---C----HHHHHHHHHHhhccceEEEehhh
Confidence 44443333 235776677778877764332 2 34566666666677899999964
No 24
>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the biosynthesis of riboflavin.The ribG gene of Bacillus subtilis and the ribD gene of E. coli are bifunctional and contain this deaminase domain and a reductase domain which catalyzes the subsequent reduction of the ribosyl side chain.
Probab=20.49 E-value=2.7e+02 Score=22.37 Aligned_cols=47 Identities=11% Similarity=0.067 Sum_probs=27.8
Q ss_pred CcceEEEeC-CeEeeeecCCCCchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Q psy5071 118 STSCAYSIG-NQVHAFKLNKVNSVLSSELMAILLCVKNLIFLPSTNFTLISD 168 (366)
Q Consensus 118 ~~G~a~~~~-~~~~~~~l~~~~s~~~AEl~AI~~aL~~~~~~~~~~i~I~sD 168 (366)
.+|+.++.. +...+...........||..||..|.+. .....++|+-
T Consensus 20 pvGaviv~~~g~iv~~g~n~~~~~~HAE~~ai~~a~~~----~l~g~tly~T 67 (115)
T cd01284 20 PVGCVIVDDDGEIVGEGYHRKAGGPHAEVNALASAGEK----LARGATLYVT 67 (115)
T ss_pred CEEEEEEeCCCeEEEEecCCCCCcccHHHHHHHHHhhc----CCCCeEEEEe
Confidence 478887765 3333333222225677999999998764 2334555543
No 25
>PRK08298 cytidine deaminase; Validated
Probab=20.25 E-value=1.5e+02 Score=24.87 Aligned_cols=56 Identities=13% Similarity=0.070 Sum_probs=33.3
Q ss_pred EecCCCCCCCcceEEEeCCeEee--eec--CCCCchHHHHHHHHHHHHHHhhhCCCCeEEEEecc
Q psy5071 109 FTDGSKTVNSTSCAYSIGNQVHA--FKL--NKVNSVLSSELMAILLCVKNLIFLPSTNFTLISDS 169 (366)
Q Consensus 109 ytDgS~~~~~~G~a~~~~~~~~~--~~l--~~~~s~~~AEl~AI~~aL~~~~~~~~~~i~I~sDs 169 (366)
|...| .||+|+...+.... ..+ .....-.-||..||..|+..-. .....|.|.+|.
T Consensus 19 Y~PYS----~VgAAllt~dG~i~tG~NvEnas~~~t~CAEr~Ai~~av~~G~-~~~~~i~v~~~~ 78 (136)
T PRK08298 19 YPNGW----GGAAAMRVEDGTILTSVAPEVINASTELCMETGAICEAHKLQK-RVTHSICVAREN 78 (136)
T ss_pred cCCCC----ceeEEEEeCCCCEEEEEeecCCCCCcchhHHHHHHHHHHHCCC-ceEEEEEEEcCC
Confidence 55555 79999886554322 222 1122345699999998875432 224556667676
No 26
>cd01286 deoxycytidylate_deaminase Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the enzyme is allosterically regulated by the ratio of dCTP to dTTP not only in eukaryotic cells but also in T-even phage-infected Escherichia coli, with dCTP acting as an activator and dTTP as an inhibitor.
Probab=20.16 E-value=3.5e+02 Score=22.23 Aligned_cols=27 Identities=22% Similarity=0.166 Sum_probs=17.4
Q ss_pred chHHHHHHHHHHHHHHhhhCCCCeEEEEe
Q psy5071 139 SVLSSELMAILLCVKNLIFLPSTNFTLIS 167 (366)
Q Consensus 139 s~~~AEl~AI~~aL~~~~~~~~~~i~I~s 167 (366)
....||..||..|.+. .......++|+
T Consensus 67 ~~~HAE~~Ai~~a~~~--~~~~~~~tLyv 93 (131)
T cd01286 67 RTVHAEQNAILQAARH--GVSLEGATLYV 93 (131)
T ss_pred CCCCHHHHHHHHHhHc--CCCcCCeEEEE
Confidence 3456999999988654 22334566665
Done!