Query psy5071
Match_columns 366
No_of_seqs 313 out of 1537
Neff 7.9
Searched_HMMs 29240
Date Sat Aug 17 01:01:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5071.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5071hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qkb_A Ribonuclease H1, HS-RNA 99.9 1.3E-23 4.4E-28 180.1 11.6 128 102-230 4-151 (154)
2 3qio_A GAG-POL polyprotein; RN 99.9 3E-23 1E-27 176.9 11.8 126 100-230 7-147 (150)
3 3h08_A RNH (ribonuclease H); R 99.9 1E-22 3.4E-27 172.9 8.3 123 104-230 3-144 (146)
4 2kq2_A Ribonuclease H-related 99.9 5.1E-23 1.7E-27 175.0 4.7 127 102-232 3-139 (147)
5 1jl1_A Ribonuclease HI; RNAse 99.9 5.4E-22 1.8E-26 170.1 9.6 126 104-233 3-146 (155)
6 3p1g_A Xenotropic murine leuke 99.9 1.2E-21 4.1E-26 169.4 11.0 124 105-231 23-157 (165)
7 2e4l_A Ribonuclease HI, RNAse 99.9 7.6E-22 2.6E-26 169.8 9.7 123 104-230 5-145 (158)
8 1ril_A Ribonuclease H; hydrola 99.8 3.9E-22 1.3E-26 172.9 5.2 125 104-232 7-150 (166)
9 2lsn_A Reverse transcriptase; 99.8 5.2E-20 1.8E-24 158.9 11.8 126 103-229 5-162 (165)
10 3u3g_D Ribonuclease H, RNAse H 99.8 3.3E-19 1.1E-23 149.2 10.7 121 104-229 2-136 (140)
11 3hst_B Protein RV2228C/MT2287; 99.8 2.2E-19 7.6E-24 150.8 9.4 121 105-230 3-133 (141)
12 1mu2_A HIV-2 RT; HIV-2 reverse 99.8 4.3E-19 1.5E-23 181.6 11.6 119 103-228 434-555 (555)
13 2zd1_A Reverse transcriptase/r 99.8 3.4E-19 1.2E-23 182.4 9.8 116 103-227 437-557 (557)
14 2ehg_A Ribonuclease HI; RNAse 99.7 3.3E-18 1.1E-22 145.3 9.9 120 106-230 2-134 (149)
15 1zbf_A Ribonuclease H-related 99.3 2.3E-12 7.9E-17 108.1 5.0 119 102-222 8-139 (142)
16 4htu_A Ribonuclease H, RNAse H 99.0 9.3E-10 3.2E-14 90.8 7.2 74 104-179 4-83 (134)
17 1rw3_A POL polyprotein; RNA an 82.7 0.18 6.2E-06 49.5 -1.0 74 103-179 344-428 (455)
18 2zd1_B P51 RT; P51/P66, hetero 35.7 46 0.0016 31.9 5.6 70 103-173 322-400 (428)
19 2fr5_A Cytidine deaminase; tet 31.7 68 0.0023 26.0 5.1 53 117-170 36-92 (146)
20 3alr_A Nanos protein; zinc-fin 29.3 21 0.00072 27.2 1.4 25 311-335 72-98 (106)
21 2nx8_A TRNA-specific adenosine 26.1 63 0.0022 27.1 4.1 52 117-168 36-91 (179)
22 1uwz_A Cytidine deaminase; CDD 24.2 1.1E+02 0.0036 24.4 5.0 52 118-170 25-80 (136)
23 1wkq_A Guanine deaminase; doma 22.5 82 0.0028 26.0 4.1 51 117-167 32-86 (164)
24 2b3j_A TRNA adenosine deaminas 22.1 1.1E+02 0.0039 24.8 4.9 52 117-168 27-82 (159)
25 2a8n_A Cytidine and deoxycytid 20.6 79 0.0027 25.2 3.5 51 117-167 24-78 (144)
26 1wwr_A TRNA adenosine deaminas 20.5 96 0.0033 25.7 4.1 51 117-167 43-97 (171)
No 1
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.90 E-value=1.3e-23 Score=180.07 Aligned_cols=128 Identities=20% Similarity=0.259 Sum_probs=100.8
Q ss_pred CCCceEEEecCCCCCCC-----cceEEEeCCe---EeeeecCCCCchHHHHHHHHHHHHHHhhhCCCCeEEEEeccHHHH
Q psy5071 102 YSDSVLCFTDGSKTVNS-----TSCAYSIGNQ---VHAFKLNKVNSVLSSELMAILLCVKNLIFLPSTNFTLISDSMSAL 173 (366)
Q Consensus 102 ~~~~~~iytDgS~~~~~-----~G~a~~~~~~---~~~~~l~~~~s~~~AEl~AI~~aL~~~~~~~~~~i~I~sDs~~al 173 (366)
+.+.+.||||||+..++ .|+|++..+. ..+..+...+|++.|||.|+..||+.+...+..+|.|+|||++++
T Consensus 4 ~~~~~~iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~~~~~l~~~~tn~~aEl~A~~~aL~~~~~~~~~~v~i~tDS~~vi 83 (154)
T 2qkb_A 4 MGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSMFTI 83 (154)
T ss_dssp ETTEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTCEEEECCSSCCHHHHHHHHHHHHHHHHHHTTCCEEEEEESCHHHH
T ss_pred CCCeEEEEEccCcCCCCCCCCcEEEEEEEECCCceeEEeecCCCCchHHHHHHHHHHHHHHHHhCCCceEEEEECcHHHH
Confidence 45679999999998543 6888876432 234556557899999999999999999887788999999999999
Q ss_pred HHHhcC--------CC-Cc--h-HHHHHHHHHHHHHhcCCcceEEEecccCCCccchhHHHHHcCcccC
Q psy5071 174 LAISNC--------KN-DH--P-LVSLVYTTWLEAKDCGKNLNFVWCPSHCGITGNELVDIAARNPITN 230 (366)
Q Consensus 174 ~~l~~~--------~~-~s--~-~~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~A~~~ 230 (366)
+.|.++ +. .. + ..+.+++.+.++.. +..|.|.|||||+|++|||.||+|||+|+..
T Consensus 84 ~~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~~-~~~v~~~~V~~H~g~~~N~~AD~LA~~a~~~ 151 (154)
T 2qkb_A 84 NGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQ-GMDIQWMHVPGHSGFIGNEEADRLAREGAKQ 151 (154)
T ss_dssp HHHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHT-TCEEEEEECCTTSSCHHHHHHHHHHHHHHTC
T ss_pred hhhhhhHHHHHhccccccCCCccccHHHHHHHHHHHc-CCceEEEEccCCCCCHhHHHHHHHHHHHHHh
Confidence 999873 11 11 1 12455666666543 5679999999999999999999999999875
No 2
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.89 E-value=3e-23 Score=176.87 Aligned_cols=126 Identities=21% Similarity=0.311 Sum_probs=95.9
Q ss_pred ccCCCceEEEecCCCCCCC--cceEEEeCC-eEeeeecCCCCchHHHHHHHHHHHHHHhhhCCCCeEEEEeccHHHHHHH
Q psy5071 100 NKYSDSVLCFTDGSKTVNS--TSCAYSIGN-QVHAFKLNKVNSVLSSELMAILLCVKNLIFLPSTNFTLISDSMSALLAI 176 (366)
Q Consensus 100 ~~~~~~~~iytDgS~~~~~--~G~a~~~~~-~~~~~~l~~~~s~~~AEl~AI~~aL~~~~~~~~~~i~I~sDs~~al~~l 176 (366)
+...+.+.||||||+..++ .|+|++..+ ......+ ..+|++.||+.|+..||+.+ ..++.|+|||+++++.|
T Consensus 7 ~P~~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~-~~~Tnn~aEl~A~i~AL~~~----~~~v~i~tDS~~v~~~i 81 (150)
T 3qio_A 7 EPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVTL-TDTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGII 81 (150)
T ss_dssp SCCTTCEEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-SSCCHHHHHHHHHHHHHHHS----CSEEEEEESCHHHHHHH
T ss_pred CCCCCCEEEEEccCCCCCCCCeEEEEEEEcCCEEEEeC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeCcHHHHHHH
Confidence 3556789999999998543 577766533 2333344 57899999999999999986 47999999999999999
Q ss_pred hcCC-----------CCch-HHHHHHHHHHHHHhcCCcceEEEecccCCCccchhHHHHHcCcccC
Q psy5071 177 SNCK-----------NDHP-LVSLVYTTWLEAKDCGKNLNFVWCPSHCGITGNELVDIAARNPITN 230 (366)
Q Consensus 177 ~~~~-----------~~s~-~~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~A~~~ 230 (366)
.++. .+.+ .-+.+++.+.++......|.|.|||||+|++|||.||+||++|+..
T Consensus 82 ~~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~ 147 (150)
T 3qio_A 82 TQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 147 (150)
T ss_dssp HHHHHHHCC------------CHHHHHHHHHHHTTCSEEEEEECCTTSCCHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHhhcCcCcCcCcccccHHHHHHHHHHHhhcCceEEEEccCcCCChhHHHHHHHHHHHHHH
Confidence 8751 1111 1244556665544577899999999999999999999999999875
No 3
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.87 E-value=1e-22 Score=172.88 Aligned_cols=123 Identities=20% Similarity=0.157 Sum_probs=91.1
Q ss_pred CceEEEecCCCCCCC--cceEEEe--CCeEe--eeecCCCCchHHHHHHHHHHHHHHhhhCCCCeEEEEeccHHHHHHHh
Q psy5071 104 DSVLCFTDGSKTVNS--TSCAYSI--GNQVH--AFKLNKVNSVLSSELMAILLCVKNLIFLPSTNFTLISDSMSALLAIS 177 (366)
Q Consensus 104 ~~~~iytDgS~~~~~--~G~a~~~--~~~~~--~~~l~~~~s~~~AEl~AI~~aL~~~~~~~~~~i~I~sDs~~al~~l~ 177 (366)
..++||||||+..++ .|+|++. ++... +..+ ..+|++.|||.|+..||+.+.+ ..+|.|+|||+++++.|.
T Consensus 3 ~~i~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~~~~-~~~Tnn~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~ 79 (146)
T 3h08_A 3 KTITIYTDGAASGNPGKGGWGALLMYGSSRKEISGYD-PATTNNRMELMAAIKGLEALKE--PARVQLYSDSAYLVNAMN 79 (146)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCSS--CCEEEEEESCHHHHHHHH
T ss_pred ceEEEEEecCCCCCCCceEEEEEEEECCeeEEeecCC-CCCcHHHHHHHHHHHHHHhcCc--cCcEEEEeChHHHHHHHH
Confidence 468999999998653 6777653 33322 2233 3678999999999999999976 579999999999999998
Q ss_pred cCC---------C---Cch-HHHHHHHHHHHHHhcCCcceEEEecccCCCccchhHHHHHcCcccC
Q psy5071 178 NCK---------N---DHP-LVSLVYTTWLEAKDCGKNLNFVWCPSHCGITGNELVDIAARNPITN 230 (366)
Q Consensus 178 ~~~---------~---~s~-~~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~A~~~ 230 (366)
+.+ . ..+ ..+.+++.+.++... ..|.|.|||||+|++|||.||+|||+|+..
T Consensus 80 ~~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~~~~-~~v~~~~V~gH~g~~~N~~AD~LA~~a~~~ 144 (146)
T 3h08_A 80 EGWLKRWVKNGWKTAAKKPVENIDLWQEILKLTTL-HRVTFHKVKGHSDNPYNSRADELARLAIKE 144 (146)
T ss_dssp SSHHHHHHHTTCC----CCCTTHHHHHHHHHHHHH-SEEEEEECCC-CCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCccCCCCCcCCHHHHHHHHHHHhh-CceEEEEcCCcCCcHhHHHHHHHHHHHHHh
Confidence 721 1 111 123455555555433 579999999999999999999999999764
No 4
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.87 E-value=5.1e-23 Score=174.98 Aligned_cols=127 Identities=17% Similarity=0.148 Sum_probs=94.6
Q ss_pred CCCceEEEecCCCCCCCcceEEEe--CCeE--eee-ec--CC--CCchHHHHHHHHHHHHHHhhhCCCCeEEEEeccHHH
Q psy5071 102 YSDSVLCFTDGSKTVNSTSCAYSI--GNQV--HAF-KL--NK--VNSVLSSELMAILLCVKNLIFLPSTNFTLISDSMSA 172 (366)
Q Consensus 102 ~~~~~~iytDgS~~~~~~G~a~~~--~~~~--~~~-~l--~~--~~s~~~AEl~AI~~aL~~~~~~~~~~i~I~sDs~~a 172 (366)
+.+.+.||||||+.++..|+|++. .+.. .+. .. +. .++++.||+.|+..||+++.+.+. +|.|+|||+.+
T Consensus 3 ~~~~i~iytDGs~~~g~~G~G~vi~~~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~~~-~v~I~tDS~~i 81 (147)
T 2kq2_A 3 DRTEYDVYTDGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQLGV-KIRILHDYAGI 81 (147)
T ss_dssp TTSCCEEECCCCCBTTBCEEEEEEEETTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHHTC-CCCBSSCCSTH
T ss_pred CCCeEEEEECCCCCCCCcEEEEEEEECCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHHCCC-eEEEEECcHHH
Confidence 456799999999998557888654 3332 233 22 21 368999999999999999877666 99999999988
Q ss_pred HHHHhcCCCCch-HHHHHHHHHHHHHhcCCcceEEEecccCCCccchhHHHHHcCcccCCC
Q psy5071 173 LLAISNCKNDHP-LVSLVYTTWLEAKDCGKNLNFVWCPSHCGITGNELVDIAARNPITNIT 232 (366)
Q Consensus 173 l~~l~~~~~~s~-~~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~A~~~~~ 232 (366)
...+.+.+..+. ......+.+.++. . .|.|.|||||+|++|||.||+|||+|+....
T Consensus 82 ~~w~~~~w~~~~~~~~~~~~l~~~l~--~-~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~ 139 (147)
T 2kq2_A 82 AFWATGEWKAKNEFTQAYAKLMNQYR--G-IYSFEKVKAHSGNEFNDYVDMKAKSALGIRD 139 (147)
T ss_dssp HHHTTSSSSCCHHHHHHHHCGGGGGS--T-TCCBCCCCCCCCCHHHHHHHHHHHHHHTCCC
T ss_pred HHHHhCCCccCCcchHHHHHHHHHhc--C-CeeEEEecCcCCCcchHHHHHHHHHHHhccc
Confidence 888877665543 3333322222321 2 8999999999999999999999999988643
No 5
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.86 E-value=5.4e-22 Score=170.15 Aligned_cols=126 Identities=22% Similarity=0.224 Sum_probs=95.3
Q ss_pred CceEEEecCCCCCCC--cceEEEe--CCeEe--eeecCCCCchHHHHHHHHHHHHHHhhhCCCCeEEEEeccHHHHHHHh
Q psy5071 104 DSVLCFTDGSKTVNS--TSCAYSI--GNQVH--AFKLNKVNSVLSSELMAILLCVKNLIFLPSTNFTLISDSMSALLAIS 177 (366)
Q Consensus 104 ~~~~iytDgS~~~~~--~G~a~~~--~~~~~--~~~l~~~~s~~~AEl~AI~~aL~~~~~~~~~~i~I~sDs~~al~~l~ 177 (366)
..+.||||||+.+++ .|+|++. .+... +..+ ..+|++.|||.|+..||+.+.. ..++.|+|||+++++.|.
T Consensus 3 ~~~~iytDGs~~~n~~~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~~~~--~~~v~I~tDS~~vi~~i~ 79 (155)
T 1jl1_A 3 KQVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGY-TRTTNNRMELMAAIVALEALKE--HAEVILSTDSQYVRQGIT 79 (155)
T ss_dssp CCEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCCS--CCEEEEEECCHHHHHHHH
T ss_pred ceEEEEEccccCCCCCceEEEEEEEECCeEEEEecCC-CCCcHHHHHHHHHHHHHHHhCc--CCcEEEEeCHHHHHHHHH
Confidence 358999999998643 6777654 33322 2233 3578999999999999999976 379999999999999999
Q ss_pred cC--------CC-Cc--hH-HHHHHHHHHHHHhcCCcceEEEecccCCCccchhHHHHHcCcccCCCC
Q psy5071 178 NC--------KN-DH--PL-VSLVYTTWLEAKDCGKNLNFVWCPSHCGITGNELVDIAARNPITNITL 233 (366)
Q Consensus 178 ~~--------~~-~s--~~-~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~A~~~~~~ 233 (366)
++ +. .+ ++ ...+++.+.++. ....|.|.|||||+|++|||.||+|||+|+..+..
T Consensus 80 ~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~-~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~~ 146 (155)
T 1jl1_A 80 QWIHNWKKRGWKTADKKPVKNVDLWQRLDAAL-GQHQIKWEWVKGHAGHPENERADELARAAAMNPTL 146 (155)
T ss_dssp TTHHHHHHTTTBCTTSCBCTTHHHHHHHHHHT-TTCEEEEEECCSSTTCHHHHHHHHHHHHHHHSCCB
T ss_pred HHHHHHhhcccccccCCccCCHHHHHHHHHHH-ccCceEEEEcCCCCCCHHHHHHHHHHHHHHhccch
Confidence 72 21 11 11 244556666654 34689999999999999999999999999987543
No 6
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.86 E-value=1.2e-21 Score=169.36 Aligned_cols=124 Identities=23% Similarity=0.259 Sum_probs=92.8
Q ss_pred ceEEEecCCCCC-CC-cceEE--EeCCeEe-eeecCCCCchHHHHHHHHHHHHHHhhhCCCCeEEEEeccHHHHHHHhcC
Q psy5071 105 SVLCFTDGSKTV-NS-TSCAY--SIGNQVH-AFKLNKVNSVLSSELMAILLCVKNLIFLPSTNFTLISDSMSALLAISNC 179 (366)
Q Consensus 105 ~~~iytDgS~~~-~~-~G~a~--~~~~~~~-~~~l~~~~s~~~AEl~AI~~aL~~~~~~~~~~i~I~sDs~~al~~l~~~ 179 (366)
.+.||||||+.. .| .|+|+ +.++... ...+...++++.||+.|+..||+++ ...++.|+|||+++++.+-..
T Consensus 23 ~i~iytDGs~~~npG~~g~G~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~---~~~~v~I~tDS~~vi~~iw~~ 99 (165)
T 3p1g_A 23 DYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMA---EGKKLNVYTDSRYAFATAHVH 99 (165)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEECTTCCHHHHHHHHHHHHHHHT---BTSEEEEEECCHHHHHHHHSC
T ss_pred CEEEEEEcccCCCCCceEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHc---cCceEEEEEchHHHHhhhhcc
Confidence 589999999983 34 55554 3333332 2245568899999999999999999 368999999999999998322
Q ss_pred CCCchH-HHHHHHHHHHHHhcCCcceEEEecccCC-----CccchhHHHHHcCcccCC
Q psy5071 180 KNDHPL-VSLVYTTWLEAKDCGKNLNFVWCPSHCG-----ITGNELVDIAARNPITNI 231 (366)
Q Consensus 180 ~~~s~~-~~~i~~~~~~l~~~~~~v~~~WVpgH~g-----i~gNe~AD~lAk~A~~~~ 231 (366)
..+.++ -+.+|+.+......+..|.|.|||||+| ++|||.||+|||+|+...
T Consensus 100 ~~g~~v~n~dl~~~l~~~l~~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~aa~~~ 157 (165)
T 3p1g_A 100 SEGREIKNKNEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKA 157 (165)
T ss_dssp CCSCCCSSHHHHHHHHHHTTSBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcccCHHHHHHHHHHHhcCCceEEEEecCCCCCCcCcchHHHHHHHHHHHHHhcC
Confidence 222221 2344565544434678999999999999 999999999999998753
No 7
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.86 E-value=7.6e-22 Score=169.75 Aligned_cols=123 Identities=20% Similarity=0.213 Sum_probs=93.4
Q ss_pred CceEEEecCCCCCCC--cceEEEe--CCeEe--eeecCCCCchHHHHHHHHHHHHHHhhhCCCCeEEEEeccHHHHHHHh
Q psy5071 104 DSVLCFTDGSKTVNS--TSCAYSI--GNQVH--AFKLNKVNSVLSSELMAILLCVKNLIFLPSTNFTLISDSMSALLAIS 177 (366)
Q Consensus 104 ~~~~iytDgS~~~~~--~G~a~~~--~~~~~--~~~l~~~~s~~~AEl~AI~~aL~~~~~~~~~~i~I~sDs~~al~~l~ 177 (366)
..+.||||||+.+++ .|+|++. .+... +..+ ..+|++.|||.|+..||+.+.. ..+|.|+|||+++++.|.
T Consensus 5 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~ 81 (158)
T 2e4l_A 5 KLIHIFTDGSCLGNPGPGGYGIVMNYKGHTKEMSDGF-SLTTNNRMELLAPIVALEALKE--PCKIILTSDSQYMRQGIM 81 (158)
T ss_dssp CEEEEEEEEEESSSSEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCSS--CCEEEEEECCHHHHHHHH
T ss_pred CeEEEEEcccccCCCCcEEEEEEEEECCEEEEEecCc-CCCccHHHHHHHHHHHHHHhcc--CCeEEEEeCHHHHHHHHH
Confidence 468999999998543 6777654 33322 2233 3578999999999999999865 389999999999999998
Q ss_pred c--------CCCC-c--h-HHHHHHHHHHHHHhcCCcceEEEecccCCCccchhHHHHHcCcccC
Q psy5071 178 N--------CKND-H--P-LVSLVYTTWLEAKDCGKNLNFVWCPSHCGITGNELVDIAARNPITN 230 (366)
Q Consensus 178 ~--------~~~~-s--~-~~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~A~~~ 230 (366)
+ .+.. . + .-..+++.+.++.. ...|.|.|||||+|++|||.||+|||+|+..
T Consensus 82 ~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~ 145 (158)
T 2e4l_A 82 TWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQ-LHQIDWRWVKGHAGHAENERCDQLARAAAEA 145 (158)
T ss_dssp THHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHT-TSEEEEEECCTTCCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHccccccCCCcccCHHHHHHHHHHHc-cCcEEEEEccCCCCchhHHHHHHHHHHHHHh
Confidence 8 3221 1 1 12345555655543 4689999999999999999999999999986
No 8
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.85 E-value=3.9e-22 Score=172.91 Aligned_cols=125 Identities=22% Similarity=0.161 Sum_probs=94.7
Q ss_pred CceEEEecCCCCCCC--cceEEEeC--CeEe--eeecCCCCchHHHHHHHHHHHHHHhhhCCCCeEEEEeccHHHHHHHh
Q psy5071 104 DSVLCFTDGSKTVNS--TSCAYSIG--NQVH--AFKLNKVNSVLSSELMAILLCVKNLIFLPSTNFTLISDSMSALLAIS 177 (366)
Q Consensus 104 ~~~~iytDgS~~~~~--~G~a~~~~--~~~~--~~~l~~~~s~~~AEl~AI~~aL~~~~~~~~~~i~I~sDs~~al~~l~ 177 (366)
..+.||||||+..++ .|+|++.. +... +... ..+|++.|||.|+..||+.+... .+|.|+|||++++..|.
T Consensus 7 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~-~~~Tnn~aEl~Ai~~AL~~~~~~--~~v~I~tDS~~vi~~i~ 83 (166)
T 1ril_A 7 KRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGE-ACTTNNRMELKAAIEGLKALKEP--CEVDLYTDSHYLKKAFT 83 (166)
T ss_dssp CCCCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEE-EEECHHHHHHHHHHHHHHSCCSC--CEEEEECCCHHHHHHHH
T ss_pred ccEEEEECccccCCCCCEEEEEEEEECCEEEEEecCC-CCCcHHHHHHHHHHHHHHHhccC--CeEEEEeChHHHHHHHh
Confidence 578999999998653 67887653 2221 2222 35789999999999999988663 58999999999999999
Q ss_pred c----------CCCCch--H-HHHHHHHHHHHHhcCCcceEEEecccCCCccchhHHHHHcCcccCCC
Q psy5071 178 N----------CKNDHP--L-VSLVYTTWLEAKDCGKNLNFVWCPSHCGITGNELVDIAARNPITNIT 232 (366)
Q Consensus 178 ~----------~~~~s~--~-~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~A~~~~~ 232 (366)
+ +...++ + ...+++.+.++.. ...|.|.|||||+|++|||.||+|||+|+....
T Consensus 84 ~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~~~ 150 (166)
T 1ril_A 84 EGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMA-PHRVRFHFVKGHTGHPENERVDREARRQAQSQA 150 (166)
T ss_dssp SSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHT-TSEEECCCCCGGGSCTHHHHHHHHHHHHHTSSC
T ss_pred hhHHHHHHhcccccccCCccCcHHHHHHHHHHHh-cCeEEEEEeeCCCCchhHHHHHHHHHHHHHHhh
Confidence 8 222221 1 2345566666543 468999999999999999999999999988654
No 9
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.82 E-value=5.2e-20 Score=158.94 Aligned_cols=126 Identities=16% Similarity=0.176 Sum_probs=91.7
Q ss_pred CCceEEEecCCCCCC-C------cceEEEeC--Ce----Eeeeec-CCCCchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Q psy5071 103 SDSVLCFTDGSKTVN-S------TSCAYSIG--NQ----VHAFKL-NKVNSVLSSELMAILLCVKNLIFLPSTNFTLISD 168 (366)
Q Consensus 103 ~~~~~iytDgS~~~~-~------~G~a~~~~--~~----~~~~~l-~~~~s~~~AEl~AI~~aL~~~~~~~~~~i~I~sD 168 (366)
...++||||||+..+ | .|+|++.. +. ...+.. ....+.+.||+.|+..||+.+...+ .+|.|+||
T Consensus 5 ~~evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al~~al~~~-~~v~I~TD 83 (165)
T 2lsn_A 5 QYEGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKIP-GPVLVITD 83 (165)
T ss_dssp CCSEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHSS-SCEEEEES
T ss_pred CceEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHHHHHhcCC-CeEEEEeC
Confidence 346899999999843 2 57887642 21 223333 3567889999999999999887644 57999999
Q ss_pred cHHHHHHHhcC--------CCC---chH-HHHHHHHHHHHHhcCCcceEEEecccCCC------ccchhHHHHHcCccc
Q psy5071 169 SMSALLAISNC--------KND---HPL-VSLVYTTWLEAKDCGKNLNFVWCPSHCGI------TGNELVDIAARNPIT 229 (366)
Q Consensus 169 s~~al~~l~~~--------~~~---s~~-~~~i~~~~~~l~~~~~~v~~~WVpgH~gi------~gNe~AD~lAk~A~~ 229 (366)
|+++++.|..+ +.. .++ -.++|+.+.++......|.|.|||||+|+ +|||.||+||++|+.
T Consensus 84 S~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~~~~~v~~~~VkgH~g~~~~~~~~gNe~AD~LA~~gA~ 162 (165)
T 2lsn_A 84 SFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMKPDITIQHEKGHQPTNTSIHTEGNALADKLATQGSY 162 (165)
T ss_dssp CHHHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHHHCTTCEEEECCSSSCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHhCCCCEEEEEEeCCCCccCCCCChHHHHHHHHHHHhhh
Confidence 99999999752 111 111 24455666665555678999999999995 589999999999864
No 10
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.79 E-value=3.3e-19 Score=149.21 Aligned_cols=121 Identities=16% Similarity=0.198 Sum_probs=93.2
Q ss_pred CceEEEecCCCCCC-C-cceEEEeC--Ce--E--eeeecCCCCchHHHHHHHHHHHHHHhhhCCCC----eEEEEeccHH
Q psy5071 104 DSVLCFTDGSKTVN-S-TSCAYSIG--NQ--V--HAFKLNKVNSVLSSELMAILLCVKNLIFLPST----NFTLISDSMS 171 (366)
Q Consensus 104 ~~~~iytDgS~~~~-~-~G~a~~~~--~~--~--~~~~l~~~~s~~~AEl~AI~~aL~~~~~~~~~----~i~I~sDs~~ 171 (366)
..+.||||||+..+ | .|+|++.. +. . .+..+ ..+|++.||+.|+..||+++...+.. ++.|+|||++
T Consensus 2 ~~~~iy~DGs~~~n~g~~G~G~v~~~~~g~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~a~~~~~~~~~~~v~i~tDS~~ 80 (140)
T 3u3g_D 2 NKIIIYTDGGARGNPGPAGIGVVITDEKGNTLHESSAYI-GETTNNVAEYEALIRALEDLQMFGDKLVDMEVEVRMDSEL 80 (140)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEECTTSCEEEEEEEEE-EEECHHHHHHHHHHHHHHHHGGGGGGGTTCEEEEEESCHH
T ss_pred ceEEEEEecCCCCCCCCcEEEEEEEeCCCCEEEEEEeeC-CCCchHHHHHHHHHHHHHHHHHcCCCCCCceEEEEeChHH
Confidence 35899999999854 2 67776642 21 1 12223 34799999999999999999887666 9999999999
Q ss_pred HHHHHhcCCC-CchHHHHHHHHHHHH-HhcCCcceEEEecccCCCccchhHHHHHcCccc
Q psy5071 172 ALLAISNCKN-DHPLVSLVYTTWLEA-KDCGKNLNFVWCPSHCGITGNELVDIAARNPIT 229 (366)
Q Consensus 172 al~~l~~~~~-~s~~~~~i~~~~~~l-~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~A~~ 229 (366)
+++.+.+.+. .+.....+++.+.++ ......|.|.||| .++||.||+|||+|+.
T Consensus 81 vi~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~~v~~~~V~----~~~N~~AD~LA~~a~~ 136 (140)
T 3u3g_D 81 IVRQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFVHIP----REKNARADELVNEAID 136 (140)
T ss_dssp HHHHHTTSSCCCCGGGHHHHHHHHHHHHHHCTTCEEEECC----GGGGHHHHHHHHHHHH
T ss_pred HHHHhCCCcccCCHHHHHHHHHHHHHhhcCCCcEEEEEcC----chhhHHHHHHHHHHHH
Confidence 9999998764 333334445667666 5666799999999 4899999999999875
No 11
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.79 E-value=2.2e-19 Score=150.78 Aligned_cols=121 Identities=16% Similarity=0.221 Sum_probs=95.4
Q ss_pred ceEEEecCCCCCC--CcceEEEe--CC-e--E--eeeecCCCCchHHHHHHHHHHHHHHhhhCCCCeEEEEeccHHHHHH
Q psy5071 105 SVLCFTDGSKTVN--STSCAYSI--GN-Q--V--HAFKLNKVNSVLSSELMAILLCVKNLIFLPSTNFTLISDSMSALLA 175 (366)
Q Consensus 105 ~~~iytDgS~~~~--~~G~a~~~--~~-~--~--~~~~l~~~~s~~~AEl~AI~~aL~~~~~~~~~~i~I~sDs~~al~~ 175 (366)
.+.||||||+..+ ..|+|++. .+ . . .+..+ ..+|++.||+.|+..||+++...+..++.|+|||+++++.
T Consensus 3 ~~~iy~DGs~~~~~g~~g~G~v~~~~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~a~~~~~~~v~i~tDS~~vv~~ 81 (141)
T 3hst_B 3 KVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAI-GRATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQ 81 (141)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEETTSCSEEEEEEEEE-EEECHHHHHHHHHHHHHHHHHHHTCSEEEEEESCHHHHHH
T ss_pred EEEEEEecCCCCCCCCcEEEEEEEeCCCCcEEEeeeccC-CCCchHHHHHHHHHHHHHHHHHCCCceEEEEeChHHHHHH
Confidence 5899999999854 26777553 22 1 1 22233 3689999999999999999998888999999999999999
Q ss_pred HhcCCC-CchHHHHHHHHHHHHHhcCCcceEEEecccCCCccchhHHHHHcCcccC
Q psy5071 176 ISNCKN-DHPLVSLVYTTWLEAKDCGKNLNFVWCPSHCGITGNELVDIAARNPITN 230 (366)
Q Consensus 176 l~~~~~-~s~~~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~A~~~ 230 (366)
+.+.+. .+.....+++.+..+......|.|.|||+ ++|+.||+|||+|+..
T Consensus 82 i~~~~~~~~~~l~~~~~~i~~l~~~~~~v~~~~V~~----~~N~~AD~LA~~a~~~ 133 (141)
T 3hst_B 82 MSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPR----ARNTYADRLANDAMDA 133 (141)
T ss_dssp HTTSSCCCSHHHHHHHHHHHHHHTTSSEEEEEECCG----GGCHHHHHHHHHHHHH
T ss_pred HhCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEcCC----cccHHHHHHHHHHHHH
Confidence 998653 34444555577777766778999999994 8999999999999764
No 12
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.78 E-value=4.3e-19 Score=181.56 Aligned_cols=119 Identities=22% Similarity=0.307 Sum_probs=91.0
Q ss_pred CCceEEEecCCCCCCC--cceEEEeC-CeEeeeecCCCCchHHHHHHHHHHHHHHhhhCCCCeEEEEeccHHHHHHHhcC
Q psy5071 103 SDSVLCFTDGSKTVNS--TSCAYSIG-NQVHAFKLNKVNSVLSSELMAILLCVKNLIFLPSTNFTLISDSMSALLAISNC 179 (366)
Q Consensus 103 ~~~~~iytDgS~~~~~--~G~a~~~~-~~~~~~~l~~~~s~~~AEl~AI~~aL~~~~~~~~~~i~I~sDs~~al~~l~~~ 179 (366)
.+.+.||||||+..++ .|+|++.. +...+..+ ..+||+.||+.|+..||+. ...++.|+|||++|++.+.++
T Consensus 434 ~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~-~~~TNn~aEl~A~i~aL~~----~~~~v~I~tDS~~v~~~i~~~ 508 (555)
T 1mu2_A 434 PGAETFYTDGSCNRQSKEGKAGYVTDRGKDKVKKL-EQTTNQQAELEAFAMALTD----SGPKVNIIVDSQYVMGIVASQ 508 (555)
T ss_dssp TTCEEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-SSCCHHHHHHHHHHHHHHT----SCSEEEEEESCHHHHHHHHTC
T ss_pred CCceEEEEcccccCCCCCceEEEEEEeCCEeeccC-CCCCHHHHHHHHHHHHHHc----CCCeEEEEEehHHHHHHHhcc
Confidence 4569999999998543 57776643 22333333 4678999999999999998 467999999999999999986
Q ss_pred CCCchHHHHHHHHHHHHHhcCCcceEEEecccCCCccchhHHHHHcCcc
Q psy5071 180 KNDHPLVSLVYTTWLEAKDCGKNLNFVWCPSHCGITGNELVDIAARNPI 228 (366)
Q Consensus 180 ~~~s~~~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~A~ 228 (366)
...+. ..+++.+.++...+..|.|.|||||+|++|||.||+|||+|+
T Consensus 509 ~~~~~--~~l~~~~~~~~~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a~ 555 (555)
T 1mu2_A 509 PTESE--SKIVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQGI 555 (555)
T ss_dssp CSEES--CHHHHHHHHHHHHCSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred ccccc--HHHHHHHHHHhccCCcEEEEEEECCCCChhHHHHHHHHHhhC
Confidence 54332 223333333333568899999999999999999999999985
No 13
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.77 E-value=3.4e-19 Score=182.38 Aligned_cols=116 Identities=22% Similarity=0.331 Sum_probs=87.5
Q ss_pred CCceEEEecCCCCCC-C-cceEEEeC-CeEeeeecCCCCchHHHHHHHHHHHHHHhhhCCCCeEEEEeccHHHHHHHhcC
Q psy5071 103 SDSVLCFTDGSKTVN-S-TSCAYSIG-NQVHAFKLNKVNSVLSSELMAILLCVKNLIFLPSTNFTLISDSMSALLAISNC 179 (366)
Q Consensus 103 ~~~~~iytDgS~~~~-~-~G~a~~~~-~~~~~~~l~~~~s~~~AEl~AI~~aL~~~~~~~~~~i~I~sDs~~al~~l~~~ 179 (366)
.+.+.||||||+..+ | .|+|++.. +....... ..+||+.||+.|+..||+.+ ..++.|+|||++|++.|.++
T Consensus 437 ~~~~~iytDGs~~~n~g~~g~g~v~~~~~~~~~~~-~~~TNn~aEl~Ai~~aL~~~----~~~v~I~tDS~~vi~~i~~~ 511 (557)
T 2zd1_A 437 VGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPL-TNTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGIIQAQ 511 (557)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-CSCCHHHHHHHHHHHHHHHS----CSEEEEEECCHHHHHHHTTC
T ss_pred CCCEEEEEccCCCCCCCceEEEEEEECCcEEEecC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeChHHHHHHHhcC
Confidence 456999999999754 3 56676543 33333333 46899999999999999998 57999999999999999997
Q ss_pred CCCc--hHHHHHHHHHHHHHhcCCcceEEEecccCCCccchhHHHHHcCc
Q psy5071 180 KNDH--PLVSLVYTTWLEAKDCGKNLNFVWCPSHCGITGNELVDIAARNP 227 (366)
Q Consensus 180 ~~~s--~~~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~A 227 (366)
...+ ++.+++++.+ .....|.|.|||||+|++|||.||+||++|
T Consensus 512 ~~~~~~~l~~~~~~~l----~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 557 (557)
T 2zd1_A 512 PDKSESELVNQIIEQL----IKKEKVYLAWVPAHKGIGGNEQVDKLVSAG 557 (557)
T ss_dssp CSEESSHHHHHHHHHH----HHCSEEEEEECCSSSCCTTCCGGGGCC---
T ss_pred CccCCHHHHHHHHHHH----hcCCCEEEEEcCCCCCChhHHHHHHHHhcC
Confidence 6653 2444432222 345689999999999999999999999986
No 14
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.75 E-value=3.3e-18 Score=145.33 Aligned_cols=120 Identities=15% Similarity=0.201 Sum_probs=90.7
Q ss_pred eEEEecCCCC-CC--Ccce-EEEe--CCeE-eee--ecC---CCCchHHHHHHHHHHHHHHhhhCCCCeEEEEeccHHHH
Q psy5071 106 VLCFTDGSKT-VN--STSC-AYSI--GNQV-HAF--KLN---KVNSVLSSELMAILLCVKNLIFLPSTNFTLISDSMSAL 173 (366)
Q Consensus 106 ~~iytDgS~~-~~--~~G~-a~~~--~~~~-~~~--~l~---~~~s~~~AEl~AI~~aL~~~~~~~~~~i~I~sDs~~al 173 (366)
+.||||||+. ++ +.|+ |++. .+.. ..+ .++ ..++++.||+.|+..||+.+...+..++.|+|||++++
T Consensus 2 ~~iy~DGs~~~~n~g~~G~~G~vi~~~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~g~~~v~i~tDS~~vi 81 (149)
T 2ehg_A 2 IIGYFDGLCEPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRLGISSPIIKGDSQLVI 81 (149)
T ss_dssp CEEEEEEEEESSSSSSEEEEEEEEECSSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHHTCCSCEEEESCHHHH
T ss_pred EEEEEeeccCCCCCChheEEEEEEEECCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEEEeChHHHH
Confidence 6899999997 33 3675 7543 2222 222 222 37899999999999999999987788999999999999
Q ss_pred HHHhcCCCC-chHHHHHHHHHHHHHhcCCcceEEEecccCCCccchhHHHHHcCcccC
Q psy5071 174 LAISNCKND-HPLVSLVYTTWLEAKDCGKNLNFVWCPSHCGITGNELVDIAARNPITN 230 (366)
Q Consensus 174 ~~l~~~~~~-s~~~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~A~~~ 230 (366)
..+.+++.. ++....+++.+..+.... .|.|.|||+ ++|+.||+|||+|+..
T Consensus 82 ~~i~~~w~~~~~~~~~l~~~i~~l~~~~-~v~~~~V~~----~~N~~AD~LA~~a~~~ 134 (149)
T 2ehg_A 82 KQMNGEYKVKAKRIIPLYEKAIELKKKL-NATLIWVPR----EENKEADRLSRVAYEL 134 (149)
T ss_dssp HHHTTSSCCCCTTHHHHHHHHHHHHHHH-TCEEEECCG----GGCHHHHHHHHHHHHH
T ss_pred HHHhCccccCCHHHHHHHHHHHHHHhcC-CEEEEEcCC----cccHHHHHHHHHHHHh
Confidence 999997653 233455556666554443 599999998 5999999999999864
No 15
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=99.28 E-value=2.3e-12 Score=108.14 Aligned_cols=119 Identities=14% Similarity=-0.042 Sum_probs=84.6
Q ss_pred CCCceEEEecCCCCCC-C-cceEEEeCC--eEee--eecCCCCchHHHHHHHHHHHHHHhhhCCCCeEEEEeccHHHHHH
Q psy5071 102 YSDSVLCFTDGSKTVN-S-TSCAYSIGN--QVHA--FKLNKVNSVLSSELMAILLCVKNLIFLPSTNFTLISDSMSALLA 175 (366)
Q Consensus 102 ~~~~~~iytDgS~~~~-~-~G~a~~~~~--~~~~--~~l~~~~s~~~AEl~AI~~aL~~~~~~~~~~i~I~sDs~~al~~ 175 (366)
..+.+.||||||+..+ | .|+|++... .... ..+ ..+|++.||++|++.||+.+.+.+. ++.|+|||++++..
T Consensus 8 ~~~~~~iy~DGa~~gNpG~~G~G~vl~~~g~~~~~~~~~-~~~TNN~aEl~A~i~aL~~~~~~~~-~v~i~tDS~~vi~w 85 (142)
T 1zbf_A 8 EIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPI-PIGTNNMGEFLAIVHGLRYLKERNS-RKPIYSNSQTAIKW 85 (142)
T ss_dssp CCCSSSEEEEEEECSSSEEEEEEEEETTTCCEEEECCCE-EEECHHHHHHHHHHHHHHHHHHTTC-CCCEEESCHHHHHH
T ss_pred CCCeEEEEEeeccCCCCCCeEEEEEEEeCCEEEEEeccc-CCcCcHHHHHHHHHHHHHHHHhCCC-eEEEEEehHHHHHH
Confidence 3467899999999854 3 688877632 2221 222 2578999999999999999998766 89999999999999
Q ss_pred HhcCCCC-c---h-HHHHHHHHHHHH--HhcCCcceEEEecccCCCccchhHHH
Q psy5071 176 ISNCKND-H---P-LVSLVYTTWLEA--KDCGKNLNFVWCPSHCGITGNELVDI 222 (366)
Q Consensus 176 l~~~~~~-s---~-~~~~i~~~~~~l--~~~~~~v~~~WVpgH~gi~gNe~AD~ 222 (366)
+.+.+.. + + ...++|+.+.++ ......++...|.-|++.-||..||.
T Consensus 86 ~~~~~~k~~~~~~v~n~dLw~~l~~~~~w~~~~~~~~~~~kw~~~~~ge~pad~ 139 (142)
T 1zbf_A 86 VKDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADY 139 (142)
T ss_dssp HHHTCCCCCCCCSTTTHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHCSCTTCC
T ss_pred HHcCCccCCCCCCcccHHHHHHHHHHHHHHhhCCCceeEEEeccCccCcCcccc
Confidence 9987632 1 1 233444444332 12345667777888888899999983
No 16
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=98.97 E-value=9.3e-10 Score=90.78 Aligned_cols=74 Identities=15% Similarity=0.015 Sum_probs=55.6
Q ss_pred CceEEEecCCCCCC-C-cceEEE-eCC-eE--eeeecCCCCchHHHHHHHHHHHHHHhhhCCCCeEEEEeccHHHHHHHh
Q psy5071 104 DSVLCFTDGSKTVN-S-TSCAYS-IGN-QV--HAFKLNKVNSVLSSELMAILLCVKNLIFLPSTNFTLISDSMSALLAIS 177 (366)
Q Consensus 104 ~~~~iytDgS~~~~-~-~G~a~~-~~~-~~--~~~~l~~~~s~~~AEl~AI~~aL~~~~~~~~~~i~I~sDs~~al~~l~ 177 (366)
....||||||+..+ | .|+|++ ..+ .. .+..+ ..+|++.||++|+..||+.+.+.+.. +.|+|||++++..|.
T Consensus 4 ~~~~iytDGac~GNPGp~G~ggV~~~~g~~~~~~g~~-~~tTNN~aEl~A~i~aL~~l~~~~~~-v~i~tDSqyVi~wi~ 81 (134)
T 4htu_A 4 IWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPI-PIGTNNMGEFLAIVHGLRYLKERNSR-KPIYSNSQTAIKWVK 81 (134)
T ss_dssp CSSSEEEEEEEETTTEEEEEEEEETTTCCEEEEEEEE-EEECHHHHHHHHHHHHHHHHHHTTCC-CCEEESCHHHHHHHH
T ss_pred cceEEEEeeccCCCCCCeEEEEEEEECCEEEEEecCC-CCCchHHHHHHHHHHHHHHHHhCCCC-EEEEcchHHHHHHHH
Confidence 45689999999854 3 677444 322 21 12223 36899999999999999999886544 899999999999998
Q ss_pred cC
Q psy5071 178 NC 179 (366)
Q Consensus 178 ~~ 179 (366)
+.
T Consensus 82 ~~ 83 (134)
T 4htu_A 82 DK 83 (134)
T ss_dssp HT
T ss_pred cC
Confidence 75
No 17
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=82.68 E-value=0.18 Score=49.50 Aligned_cols=74 Identities=9% Similarity=-0.050 Sum_probs=47.1
Q ss_pred CCceEEEecCCCCCCCcceEEEeCC----eE---eeeec---CCCCchHHHHHHHHHHHHHHhhh-CCCCeEEEEeccHH
Q psy5071 103 SDSVLCFTDGSKTVNSTSCAYSIGN----QV---HAFKL---NKVNSVLSSELMAILLCVKNLIF-LPSTNFTLISDSMS 171 (366)
Q Consensus 103 ~~~~~iytDgS~~~~~~G~a~~~~~----~~---~~~~l---~~~~s~~~AEl~AI~~aL~~~~~-~~~~~i~I~sDs~~ 171 (366)
...+.+|||+|. .++|+...... .. .+..+ ....+.+..|++||..|++.... .....++|+||+.
T Consensus 344 ~~~~~l~~DAS~--~~~gavL~q~~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~~~~~~yl~g~~~~v~tDh~- 420 (455)
T 1rw3_A 344 TKPFELFVDEKQ--GYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVIKAPHA- 420 (455)
T ss_dssp CCTTSCEEEEEE--CSSSBEECCBCTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHHGGGCSSCEEEECSSC-
T ss_pred CCcEEEEEeccC--CcceeEEEEecCCcEEEEEEEcccCCccccccchHHHHHHHHHHHHHHHHHHcCCCcEEEEecCh-
Confidence 345789999984 34443332221 11 12223 23456788999999999988765 3457899999996
Q ss_pred HHHHHhcC
Q psy5071 172 ALLAISNC 179 (366)
Q Consensus 172 al~~l~~~ 179 (366)
++..+.+.
T Consensus 421 ~~~~l~~~ 428 (455)
T 1rw3_A 421 VEALVKQP 428 (455)
T ss_dssp TTTTSSST
T ss_pred HHHHhCCC
Confidence 65555544
No 18
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=35.71 E-value=46 Score=31.90 Aligned_cols=70 Identities=4% Similarity=-0.123 Sum_probs=39.2
Q ss_pred CCceEEEecCCCCCCCcceEEEeCC--eEeeeec--CCCCchHHHHHHH-HHHHHHHhhh----CCCCeEEEEeccHHHH
Q psy5071 103 SDSVLCFTDGSKTVNSTSCAYSIGN--QVHAFKL--NKVNSVLSSELMA-ILLCVKNLIF----LPSTNFTLISDSMSAL 173 (366)
Q Consensus 103 ~~~~~iytDgS~~~~~~G~a~~~~~--~~~~~~l--~~~~s~~~AEl~A-I~~aL~~~~~----~~~~~i~I~sDs~~al 173 (366)
...+.++||+|... ..|+...+++ ...+.++ ......+.-|++| |..||+.... .....++++||++...
T Consensus 322 ~~~~~l~~das~~g-~~g~vl~q~~~~~~~s~~~~~~~~y~~~~~e~la~vv~al~~~r~yl~G~~~~~~i~~td~~~~~ 400 (428)
T 2zd1_B 322 SKDLIAEIQKQGQG-QWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWET 400 (428)
T ss_dssp TSCCEEEEEEEETT-EEEEEEESSTTCEEEEEEEECCSSCTTCHHHHHHHHHHHHHHHHHHHHSSCCEEEESSCHHHHHH
T ss_pred CCCEEEEEecCCCC-cEEEEEecCCCceeeecccchhhhcccchHHHHHHHHHHhhccceEEECCCCcEECCccHHHHHH
Confidence 34579999999421 2233333332 1222233 2233344456666 9999976442 2346678889998543
No 19
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=31.65 E-value=68 Score=25.99 Aligned_cols=53 Identities=13% Similarity=0.050 Sum_probs=32.9
Q ss_pred CCcceEEEeCCeEe--eeecC--CCCchHHHHHHHHHHHHHHhhhCCCCeEEEEeccH
Q psy5071 117 NSTSCAYSIGNQVH--AFKLN--KVNSVLSSELMAILLCVKNLIFLPSTNFTLISDSM 170 (366)
Q Consensus 117 ~~~G~a~~~~~~~~--~~~l~--~~~s~~~AEl~AI~~aL~~~~~~~~~~i~I~sDs~ 170 (366)
-.||++++..+... ...+. .......||..||..|... -......+.|++|..
T Consensus 36 f~VGAal~~~dG~i~~G~NvEnas~~~t~cAE~~Ai~~A~~~-G~~~l~~i~v~~~~~ 92 (146)
T 2fr5_A 36 FPVGAALLTGDGRIFSGCNIENACYPLGVCAERTAIQKAISE-GYKDFRAIAISSDLQ 92 (146)
T ss_dssp CCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEESCS
T ss_pred CCEEEEEEeCCCcEEEEEeccccCCCCCcCHHHHHHHHHHhC-CCCceEEEEEEeCCC
Confidence 35899988644322 22221 1112245999999999875 333467889998863
No 20
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=29.30 E-value=21 Score=27.22 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=21.3
Q ss_pred CCcc-CCCCCCcceeec-CcccHHHhh
Q psy5071 311 PTCG-CGDTLTVDHIFN-CRTHLQIRA 335 (366)
Q Consensus 311 ~~C~-CG~~etv~HiL~-Cp~~~~~R~ 335 (366)
-.|. ||+..+-.|.+- ||+......
T Consensus 72 Y~CpiCGATGd~AHT~kYCP~~~~~~~ 98 (106)
T 3alr_A 72 YKCPLCGATGAKAHTKRFCPMVDKNYC 98 (106)
T ss_dssp CCCTTTCCCGGGCCCGGGCTTCGGGGC
T ss_pred ccCCCCCCcCCcccceecCCCCCCccC
Confidence 5799 999999999999 999875543
No 21
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=26.12 E-value=63 Score=27.07 Aligned_cols=52 Identities=15% Similarity=0.095 Sum_probs=31.3
Q ss_pred CCcceEEEeCCeEeeeecC----CCCchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Q psy5071 117 NSTSCAYSIGNQVHAFKLN----KVNSVLSSELMAILLCVKNLIFLPSTNFTLISD 168 (366)
Q Consensus 117 ~~~G~a~~~~~~~~~~~l~----~~~s~~~AEl~AI~~aL~~~~~~~~~~i~I~sD 168 (366)
..+|+.++..+...+.... .......||..||..|.+..........++|+-
T Consensus 36 ~pVGAVIV~~g~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~~~~~l~g~tlYvT 91 (179)
T 2nx8_A 36 IPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHEGNWRLLDTTLFVT 91 (179)
T ss_dssp CCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEEE
T ss_pred CCEEEEEEECCEEEEEEECCCCCcCCCccCHHHHHHHHHHHHcCCCcccceEEEEC
Confidence 3588888865543322211 111134599999999987765444556777773
No 22
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=24.24 E-value=1.1e+02 Score=24.39 Aligned_cols=52 Identities=10% Similarity=0.015 Sum_probs=32.2
Q ss_pred CcceEEEeCCeE-e-eeecC--CCCchHHHHHHHHHHHHHHhhhCCCCeEEEEeccH
Q psy5071 118 STSCAYSIGNQV-H-AFKLN--KVNSVLSSELMAILLCVKNLIFLPSTNFTLISDSM 170 (366)
Q Consensus 118 ~~G~a~~~~~~~-~-~~~l~--~~~s~~~AEl~AI~~aL~~~~~~~~~~i~I~sDs~ 170 (366)
.||++++..+.. . ..... ...-...||..||..|... -......++|++|..
T Consensus 25 ~VGAal~~~dG~i~~G~Nvena~~~~t~cAE~~Ai~~A~~~-G~~~~~~~~l~~~~~ 80 (136)
T 1uwz_A 25 QVGAALLTKDGKVYRGCNIENAAYSMCNCAEATALFKAVSE-GDTEFQMLAVAADTP 80 (136)
T ss_dssp CEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHH-TCCCEEEEEEEESCS
T ss_pred CEEEEEEeCCCeEEEEeCcccCCCCCccCHHHHHHHHHHHC-CCCCeEEEEEEeCCC
Confidence 488888864432 2 22221 1112345999999999876 334567888998753
No 23
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=22.50 E-value=82 Score=25.97 Aligned_cols=51 Identities=16% Similarity=0.040 Sum_probs=30.9
Q ss_pred CCcceEEEeCCeEeeeecC----CCCchHHHHHHHHHHHHHHhhhCCCCeEEEEe
Q psy5071 117 NSTSCAYSIGNQVHAFKLN----KVNSVLSSELMAILLCVKNLIFLPSTNFTLIS 167 (366)
Q Consensus 117 ~~~G~a~~~~~~~~~~~l~----~~~s~~~AEl~AI~~aL~~~~~~~~~~i~I~s 167 (366)
..+|+.++..+...+.... ...-.-.||..||..|.+.+........++|+
T Consensus 32 ~pVGAVIV~~g~Ii~~G~N~~~~~~d~~~HAE~~AI~~a~~~~~~~~l~g~tlYv 86 (164)
T 1wkq_A 32 GPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQLDDCILYT 86 (164)
T ss_dssp SSCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSSCTTEEEEE
T ss_pred CCEEEEEEECCEEEEEEecCCcCCCCcccCHHHHHHHHHHHHcCCCCcCceEEEE
Confidence 4488888865543322211 11113459999999998765444456677777
No 24
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=22.07 E-value=1.1e+02 Score=24.78 Aligned_cols=52 Identities=19% Similarity=0.028 Sum_probs=31.0
Q ss_pred CCcceEEEeCCeEeeeecCC----CCchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Q psy5071 117 NSTSCAYSIGNQVHAFKLNK----VNSVLSSELMAILLCVKNLIFLPSTNFTLISD 168 (366)
Q Consensus 117 ~~~G~a~~~~~~~~~~~l~~----~~s~~~AEl~AI~~aL~~~~~~~~~~i~I~sD 168 (366)
..||+.++..+......... ..-...||..||..|............++|+.
T Consensus 27 ~pVGAviv~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tlyvT 82 (159)
T 2b3j_A 27 VPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLEGCTLYVT 82 (159)
T ss_dssp CCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEEE
T ss_pred CCEEEEEEECCEEEEEEECCCCCCCCCccCHHHHHHHHHHHHcCCCCcceeEEEEC
Confidence 34788877644433222110 11234599999999987655444566777763
No 25
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=20.56 E-value=79 Score=25.24 Aligned_cols=51 Identities=14% Similarity=0.018 Sum_probs=29.0
Q ss_pred CCcceEEEeCCeEeeeecC----CCCchHHHHHHHHHHHHHHhhhCCCCeEEEEe
Q psy5071 117 NSTSCAYSIGNQVHAFKLN----KVNSVLSSELMAILLCVKNLIFLPSTNFTLIS 167 (366)
Q Consensus 117 ~~~G~a~~~~~~~~~~~l~----~~~s~~~AEl~AI~~aL~~~~~~~~~~i~I~s 167 (366)
..+|+.++..+...+.... ...-...||..||..|.+..........++|+
T Consensus 24 ~~VGAviv~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~~~~~tly~ 78 (144)
T 2a8n_A 24 VPIGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRMACEALGQERLPGADLYV 78 (144)
T ss_dssp CCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTCEEEE
T ss_pred CCEEEEEEECCEEEEEEECCCCCCCCCcCCHHHHHHHHHHHHcCCCccCCeEEEE
Confidence 3478887764443322211 11113459999999998765443345566665
No 26
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=20.49 E-value=96 Score=25.73 Aligned_cols=51 Identities=12% Similarity=0.016 Sum_probs=30.5
Q ss_pred CCcceEEEeCCeEeeeecC----CCCchHHHHHHHHHHHHHHhhhCCCCeEEEEe
Q psy5071 117 NSTSCAYSIGNQVHAFKLN----KVNSVLSSELMAILLCVKNLIFLPSTNFTLIS 167 (366)
Q Consensus 117 ~~~G~a~~~~~~~~~~~l~----~~~s~~~AEl~AI~~aL~~~~~~~~~~i~I~s 167 (366)
..||++++..+...+.... .......||..||..|.+..........++|+
T Consensus 43 ~pVGAvIV~dg~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~g~~~l~~~tlYv 97 (171)
T 1wwr_A 43 VPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYLEGCELYV 97 (171)
T ss_dssp CCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTEEEEE
T ss_pred CCEEEEEEECCEEEEEEECCCCccCCcccCHHHHHHHHHHHHcCCCccCceEEEE
Confidence 3488888774443322211 01112459999999998765444456677776
Done!