BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5072
(114 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OB6|A Chain A, Structure Of Adic(N101a) In The Open-To-Out Arg+ Bound
Conformation
pdb|3OB6|B Chain B, Structure Of Adic(N101a) In The Open-To-Out Arg+ Bound
Conformation
Length = 445
Score = 34.3 bits (77), Expect = 0.020, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 22 YSELGCMISKSGADYAYIMTTFGPFLAF---IRLWIECMIVRPCSQAIVALTFSIYALKP 78
Y+++ + G YAY FGPFL + + W+ C I AI + + L
Sbjct: 60 YAKMSFLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWI-----GAIAMVVIGVGYLSY 114
Query: 79 FFPTCDPP 86
FFP P
Sbjct: 115 FFPILKDP 122
>pdb|3NCY|A Chain A, X-Ray Crystal Structure Of An Arginine Agmatine Antiporter
(Adic) In Complex With A Fab Fragment
pdb|3NCY|B Chain B, X-Ray Crystal Structure Of An Arginine Agmatine Antiporter
(Adic) In Complex With A Fab Fragment
pdb|3NCY|C Chain C, X-Ray Crystal Structure Of An Arginine Agmatine Antiporter
(Adic) In Complex With A Fab Fragment
pdb|3NCY|D Chain D, X-Ray Crystal Structure Of An Arginine Agmatine Antiporter
(Adic) In Complex With A Fab Fragment
Length = 445
Score = 32.7 bits (73), Expect = 0.058, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
Query: 22 YSELGCMISKSGADYAYIMTTFGPFLAF---IRLWIECMIVRPCSQAIVALTFSIYALKP 78
Y+++ + G YAY FGPFL + + W+ C I I + + L
Sbjct: 60 YAKMSSLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWI-----GNIAMVVIGVGYLSY 114
Query: 79 FFPTCDPP 86
FFP P
Sbjct: 115 FFPILKDP 122
>pdb|3L1L|A Chain A, Structure Of Arg-Bound Escherichia Coli Adic
Length = 445
Score = 32.0 bits (71), Expect = 0.087, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
Query: 22 YSELGCMISKSGADYAYIMTTFGPFLAF---IRLWIECMIVRPCSQAIVALTFSIYALKP 78
Y+++ + G YAY FGPFL + + W+ C I I + + L
Sbjct: 60 YAKMSFLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWI-----GNIAMVVIGVGYLSY 114
Query: 79 FFPTCDPP 86
FFP P
Sbjct: 115 FFPILKDP 122
>pdb|3LRB|A Chain A, Structure Of E. Coli Adic
pdb|3LRB|B Chain B, Structure Of E. Coli Adic
pdb|3LRC|A Chain A, Structure Of E. Coli Adic (P1)
pdb|3LRC|B Chain B, Structure Of E. Coli Adic (P1)
pdb|3LRC|C Chain C, Structure Of E. Coli Adic (P1)
pdb|3LRC|D Chain D, Structure Of E. Coli Adic (P1)
Length = 445
Score = 32.0 bits (71), Expect = 0.087, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
Query: 22 YSELGCMISKSGADYAYIMTTFGPFLAF---IRLWIECMIVRPCSQAIVALTFSIYALKP 78
Y+++ + G YAY FGPFL + + W+ C I I + + L
Sbjct: 60 YAKMSFLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWI-----GNIAMVVIGVGYLSY 114
Query: 79 FFPTCDPP 86
FFP P
Sbjct: 115 FFPILKDP 122
>pdb|3BG9|A Chain A, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus) F1077a
Mutant
pdb|3BG9|B Chain B, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus) F1077a
Mutant
pdb|3BG9|C Chain C, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus) F1077a
Mutant
pdb|3BG9|D Chain D, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus) F1077a
Mutant
Length = 718
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 8 PAHINTHDKVGAYCYSELGCMISKSGAD 35
P HI+THD GA + L C +++GAD
Sbjct: 307 PLHIHTHDTSGAGVAAMLAC--AQAGAD 332
>pdb|3BG3|A Chain A, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus)
pdb|3BG3|B Chain B, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus)
pdb|3BG3|C Chain C, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus)
pdb|3BG3|D Chain D, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus)
Length = 718
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 8 PAHINTHDKVGAYCYSELGCMISKSGAD 35
P HI+THD GA + L C +++GAD
Sbjct: 307 PLHIHTHDTSGAGVAAMLAC--AQAGAD 332
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.330 0.141 0.467
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,947,590
Number of Sequences: 62578
Number of extensions: 92003
Number of successful extensions: 143
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 139
Number of HSP's gapped (non-prelim): 6
length of query: 114
length of database: 14,973,337
effective HSP length: 77
effective length of query: 37
effective length of database: 10,154,831
effective search space: 375728747
effective search space used: 375728747
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 45 (21.9 bits)