Query psy5072
Match_columns 114
No_of_seqs 180 out of 1101
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 16:32:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5072.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5072hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1287|consensus 99.9 2.1E-21 4.5E-26 150.5 11.8 106 8-113 53-159 (479)
2 TIGR00911 2A0308 L-type amino 99.7 2.5E-17 5.4E-22 129.0 13.0 107 7-113 82-189 (501)
3 PRK10655 potE putrescine trans 99.7 3.2E-16 7E-21 120.7 12.5 104 7-113 43-147 (438)
4 PRK10644 arginine:agmatin anti 99.7 1E-15 2.3E-20 118.2 12.4 104 7-113 45-149 (445)
5 PF13520 AA_permease_2: Amino 99.7 2.6E-15 5.5E-20 114.8 12.9 106 7-113 35-142 (426)
6 PRK11357 frlA putative fructos 99.7 1.8E-15 3.8E-20 116.9 11.6 103 7-113 48-151 (445)
7 TIGR03428 ureacarb_perm permea 99.6 2.4E-15 5.1E-20 117.2 12.2 106 7-113 52-168 (475)
8 TIGR00908 2A0305 ethanolamine 99.6 2.4E-15 5.2E-20 116.0 11.8 100 7-113 45-145 (442)
9 PRK10435 cadB lysine/cadaverin 99.6 3.9E-15 8.4E-20 114.9 12.8 103 7-113 42-145 (435)
10 TIGR00905 2A0302 transporter, 99.6 2.9E-15 6.3E-20 116.7 11.6 105 7-113 46-153 (473)
11 PRK11021 putative transporter; 99.6 4.7E-15 1E-19 113.5 12.2 103 6-113 36-139 (410)
12 TIGR00907 2A0304 amino acid pe 99.6 3.3E-15 7.2E-20 116.4 11.3 107 6-113 51-167 (482)
13 TIGR01773 GABAperm gamma-amino 99.6 9.5E-15 2.1E-19 113.0 11.8 101 6-113 49-150 (452)
14 TIGR00906 2A0303 cationic amin 99.6 5.5E-15 1.2E-19 117.5 10.7 107 6-113 66-185 (557)
15 KOG1289|consensus 99.6 4E-15 8.8E-20 116.6 9.2 106 7-113 88-201 (550)
16 PRK11387 S-methylmethionine tr 99.6 1.3E-14 2.8E-19 113.0 12.0 101 6-113 52-153 (471)
17 PRK10249 phenylalanine transpo 99.6 1.4E-14 3.1E-19 112.6 11.9 101 6-113 58-159 (458)
18 PRK10197 gamma-aminobutyrate t 99.6 1.6E-14 3.5E-19 112.0 12.1 101 6-113 29-130 (446)
19 PRK10238 aromatic amino acid t 99.6 1.8E-14 3.9E-19 112.0 12.1 101 6-113 49-150 (456)
20 TIGR00930 2a30 K-Cl cotranspor 99.6 2E-14 4.4E-19 120.0 12.0 106 6-113 115-227 (953)
21 PRK15049 L-asparagine permease 99.6 4.1E-14 8.9E-19 111.2 12.7 102 6-113 65-168 (499)
22 TIGR03810 arg_ornith_anti argi 99.6 4.4E-14 9.5E-19 110.0 12.3 105 7-113 40-147 (468)
23 PRK10746 putative transport pr 99.6 5.2E-14 1.1E-18 109.6 12.1 101 6-113 47-148 (461)
24 PRK10580 proY putative proline 99.6 3.7E-14 8.1E-19 110.0 11.2 101 6-113 46-147 (457)
25 PRK10836 lysine transporter; P 99.5 1.8E-13 4E-18 107.1 11.7 101 6-113 53-154 (489)
26 TIGR00909 2A0306 amino acid tr 99.5 1.2E-13 2.7E-18 105.9 9.8 105 7-113 41-157 (429)
27 TIGR00910 2A0307_GadC glutamat 99.5 2.1E-13 4.5E-18 107.5 11.0 102 9-113 40-147 (507)
28 COG0531 PotE Amino acid transp 99.5 3.2E-13 7E-18 103.7 11.0 104 8-113 51-158 (466)
29 TIGR00913 2A0310 amino acid pe 99.5 4.9E-13 1.1E-17 104.1 11.7 101 6-113 40-142 (478)
30 TIGR03813 put_Glu_GABA_T putat 99.5 4.5E-13 9.8E-18 104.4 11.3 105 8-113 36-147 (474)
31 PRK11049 D-alanine/D-serine/gl 99.4 3.1E-12 6.8E-17 99.7 12.2 100 7-113 58-158 (469)
32 PRK15238 inner membrane transp 99.4 5.1E-12 1.1E-16 99.1 12.3 104 8-113 43-159 (496)
33 PHA02764 hypothetical protein; 99.3 2.5E-12 5.5E-17 95.8 4.6 60 6-66 50-109 (399)
34 TIGR00837 araaP aromatic amino 99.2 2.2E-10 4.8E-15 86.9 10.6 105 7-113 33-138 (381)
35 PF00324 AA_permease: Amino ac 99.2 2.7E-11 5.8E-16 94.5 4.5 106 6-113 33-141 (478)
36 KOG1286|consensus 99.1 5.2E-10 1.1E-14 89.2 8.7 72 6-78 68-140 (554)
37 COG1113 AnsP Gamma-aminobutyra 99.0 1.6E-08 3.5E-13 78.5 12.0 100 6-112 50-150 (462)
38 TIGR00912 2A0309 spore germina 98.9 3.8E-08 8.2E-13 74.2 12.0 104 3-113 35-139 (359)
39 COG0833 LysP Amino acid transp 98.9 3.5E-08 7.5E-13 78.0 11.1 101 6-112 82-183 (541)
40 TIGR00796 livcs branched-chain 98.1 6.4E-05 1.4E-09 57.8 10.6 97 6-112 33-134 (378)
41 TIGR00814 stp serine transport 97.8 0.0007 1.5E-08 52.4 11.8 99 10-113 38-146 (397)
42 PF03845 Spore_permease: Spore 97.1 0.016 3.5E-07 43.1 11.5 101 6-113 36-137 (320)
43 PF03222 Trp_Tyr_perm: Tryptop 96.7 0.04 8.6E-07 42.7 10.7 69 8-77 40-108 (394)
44 KOG2083|consensus 95.7 0.016 3.4E-07 47.1 4.2 101 9-113 70-172 (643)
45 PRK15132 tyrosine transporter 94.9 0.47 1E-05 37.0 10.0 66 9-75 41-106 (403)
46 COG0814 SdaC Amino acid permea 94.3 0.92 2E-05 35.4 10.5 70 7-77 45-115 (415)
47 PRK13629 threonine/serine tran 94.3 1.8 3.9E-05 34.4 12.0 99 9-111 57-160 (443)
48 PRK10483 tryptophan permease; 92.2 3.6 7.8E-05 32.3 10.7 70 7-77 47-116 (414)
49 KOG2082|consensus 91.7 0.23 4.9E-06 41.9 3.7 103 8-111 153-269 (1075)
50 PRK09664 tryptophan permease T 91.1 6.2 0.00013 31.1 10.9 69 8-77 46-114 (415)
51 TIGR00835 agcS amino acid carr 88.2 11 0.00023 29.9 10.3 96 10-113 86-190 (425)
52 PF01235 Na_Ala_symp: Sodium:a 88.0 9.4 0.0002 30.1 9.8 38 10-47 58-102 (416)
53 COG1115 AlsT Na+/alanine sympo 82.4 24 0.00051 28.3 9.7 97 10-113 102-207 (452)
54 KOG1288|consensus 78.9 3 6.5E-05 35.2 3.8 104 9-113 107-221 (945)
55 PF11118 DUF2627: Protein of u 43.2 41 0.00089 20.3 3.0 23 91-113 3-26 (77)
56 PF13317 DUF4088: Protein of u 35.6 21 0.00044 25.5 1.1 16 31-46 49-64 (229)
57 KOG4812|consensus 30.7 2.2E+02 0.0049 21.0 7.9 17 98-114 236-253 (262)
58 PF12051 DUF3533: Protein of u 20.4 4E+02 0.0087 20.4 8.0 43 9-58 250-292 (382)
59 PF11286 DUF3087: Protein of u 20.0 3.1E+02 0.0067 19.0 5.8 23 60-83 22-44 (165)
No 1
>KOG1287|consensus
Probab=99.87 E-value=2.1e-21 Score=150.52 Aligned_cols=106 Identities=44% Similarity=0.753 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCCCh
Q psy5072 8 PAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDPPD 87 (114)
Q Consensus 8 ~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~~~~ 87 (114)
-++++++++..|+||||||+++|++||+|.|+.++||+.++|+.+|..+++..|.+.|..+.+|++|..++++|++++|+
T Consensus 53 Wv~~gi~s~~galcyaELGT~ipksGgd~ayi~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~c~~p~ 132 (479)
T KOG1287|consen 53 WVFCGIISIIGALCYAELGTSIPKSGGDYAYISEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPLCDVPR 132 (479)
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCCcchhhHHHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCCCCCch
Confidence 46789999999999999999999999999999999999999999999999999999999999999998888999888999
Q ss_pred hHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072 88 ESVRLLAVCCIYS-CYRYCSSQTLLID 113 (114)
Q Consensus 88 ~~~~~ia~~~i~~-~~iN~~g~k~~~~ 113 (114)
+..++++.+++++ +++|+.++|+-+|
T Consensus 133 ~~~~lla~~~l~~lt~~n~~~V~~a~~ 159 (479)
T KOG1287|consen 133 VASKLLAAALLVLLTLINSFSVKWATR 159 (479)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 9999999999999 9999999996543
No 2
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.75 E-value=2.5e-17 Score=128.96 Aligned_cols=107 Identities=46% Similarity=0.838 Sum_probs=92.5
Q ss_pred hHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCCC
Q psy5072 7 CPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDPP 86 (114)
Q Consensus 7 ~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~~~ 86 (114)
...+++++.++.+++|+|+++++|++||.|.|+++.+||..||+.+|.++....+...+..+..+++|+.+.++|+...+
T Consensus 82 ~~ii~~i~~~~~al~~aELas~~P~sGG~y~~~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~ 161 (501)
T TIGR00911 82 MWAVCGIFSIVGALVYAELGTTIPKSGGEYNYILEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVP 161 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhHHhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 35688899999999999999999999999999999999999999999987655677788888999999865556766566
Q ss_pred hhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072 87 DESVRLLAVCCIYS-CYRYCSSQTLLID 113 (114)
Q Consensus 87 ~~~~~~ia~~~i~~-~~iN~~g~k~~~~ 113 (114)
.+..+.++++++++ +.+|++|+|..+|
T Consensus 162 ~~~~~~i~~~~i~~~~~ln~~Gvk~~~~ 189 (501)
T TIGR00911 162 EWAIRLVAVLCVLLLTLVNCLSVKWATR 189 (501)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 77778888888888 9999999998765
No 3
>PRK10655 potE putrescine transporter; Provisional
Probab=99.70 E-value=3.2e-16 Score=120.70 Aligned_cols=104 Identities=13% Similarity=0.129 Sum_probs=84.9
Q ss_pred hHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCCC
Q psy5072 7 CPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDPP 86 (114)
Q Consensus 7 ~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~~~ 86 (114)
.+.+++++.++.++||+||++++|++||.|.|+++.+||..||+.||.+++. +.......+.++.+|+.. ++|. +.+
T Consensus 43 ~w~i~~~~~~~~a~~~aeL~~~~P~~GG~y~y~~~~~G~~~gf~~gw~~~~~-~~~~~~~~a~~~~~y~~~-~~~~-~~~ 119 (438)
T PRK10655 43 SWLVTAVGSMALAYAFAKCGMFSRKSGGMGGYAEYAFGKSGNFMANYTYGVS-LLIANVAIAISAVGYGTE-LFGA-TLS 119 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHcCcchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-hccc-ccc
Confidence 5788999999999999999999999999999999999999999999998764 344455557777889865 4553 233
Q ss_pred hhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072 87 DESVRLLAVCCIYS-CYRYCSSQTLLID 113 (114)
Q Consensus 87 ~~~~~~ia~~~i~~-~~iN~~g~k~~~~ 113 (114)
++...++.++++++ +.+|++|+|..+|
T Consensus 120 ~~~~~~~~~~~l~~~~~ln~~g~~~~~~ 147 (438)
T PRK10655 120 PVQICLATIGVLWLCTVANFGGARITGQ 147 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 45566677777777 8999999998765
No 4
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.67 E-value=1e-15 Score=118.24 Aligned_cols=104 Identities=14% Similarity=0.179 Sum_probs=81.9
Q ss_pred hHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCCC
Q psy5072 7 CPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDPP 86 (114)
Q Consensus 7 ~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~~~ 86 (114)
.+.++++.+++.+++|+||++++|++||.|.|+++.+||..||++||.+++.. ....++.+....+|... ++|.. .+
T Consensus 45 ~~~i~~~~~l~~al~~aEL~s~~P~aGG~y~~~~~~~g~~~gf~~gw~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~-~~ 121 (445)
T PRK10644 45 GWLVTIIGALGLSMVYAKMSSLDPSPGGSYAYARRCFGPFLGYQTNVLYWLAC-WIGNIAMVVIGVGYLSY-FFPIL-KD 121 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHHHcCchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-Hhccc-CC
Confidence 56788999999999999999999999999999999999999999999987643 33444455556677653 55532 23
Q ss_pred hhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072 87 DESVRLLAVCCIYS-CYRYCSSQTLLID 113 (114)
Q Consensus 87 ~~~~~~ia~~~i~~-~~iN~~g~k~~~~ 113 (114)
++...+++++++++ +.+|++|+|...|
T Consensus 122 ~~~~~~~~~~~~~~~~~ln~~gvk~~~~ 149 (445)
T PRK10644 122 PLVLTITCVVVLWIFVLLNIVGPKMITR 149 (445)
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 45556667777777 8999999998765
No 5
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.66 E-value=2.6e-15 Score=114.77 Aligned_cols=106 Identities=25% Similarity=0.264 Sum_probs=88.7
Q ss_pred hHHHHHHHH-HHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCC
Q psy5072 7 CPAHINTHD-KVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDP 85 (114)
Q Consensus 7 ~~~~~~l~~-~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~~ 85 (114)
...+++++. ++.+++|+|+++++|++||.|.|+++.+||++||+.+|.+++. +....++.+..+++|+...+.|+.++
T Consensus 35 ~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (426)
T PF13520_consen 35 AWIIAALLFFLPIALSYAELSSAYPSAGGIYVWVSRAFGPFWGFIVGWLYWVA-YILSLASVASSFASYLLSLFGPDLNP 113 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHH-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTTTTTGGGTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCcCeeeehhhhcccccchhcccceeEEE-eeccccccccchhhhhhhcccccccc
Confidence 345677777 7999999999999999999999999999999999999999764 67777788889999998765555444
Q ss_pred ChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072 86 PDESVRLLAVCCIYS-CYRYCSSQTLLID 113 (114)
Q Consensus 86 ~~~~~~~ia~~~i~~-~~iN~~g~k~~~~ 113 (114)
+++....++++++++ +.+|++|.|...|
T Consensus 114 ~~~~~~~i~~~~~~~~~~l~~~g~~~~~~ 142 (426)
T PF13520_consen 114 SPWPQFLIAIILILLFTLLNLLGIKLSGK 142 (426)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred ccchheeeeecccccceEeeechhhhhhh
Confidence 566778888888888 9999999998764
No 6
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.65 E-value=1.8e-15 Score=116.88 Aligned_cols=103 Identities=19% Similarity=0.097 Sum_probs=84.2
Q ss_pred hHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCCC
Q psy5072 7 CPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDPP 86 (114)
Q Consensus 7 ~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~~~ 86 (114)
.++++++++++.++||+|+++++|++||.|.|+++.+||..||+.+|..++...+...+..+..+++|+.. .+|. +
T Consensus 48 ~~li~~v~~l~~al~~aEl~s~~P~~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~-~~~~---~ 123 (445)
T PRK11357 48 AFVIGGLIVIPQMCVYAELSTAYPENGADYVYLKNAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGF-LTPI---D 123 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCceeeHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCC---c
Confidence 47889999999999999999999999999999999999999999999866555566778889999999864 4442 2
Q ss_pred hhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072 87 DESVRLLAVCCIYS-CYRYCSSQTLLID 113 (114)
Q Consensus 87 ~~~~~~ia~~~i~~-~~iN~~g~k~~~~ 113 (114)
....+.++.+++.+ +.+|.+|+|...|
T Consensus 124 ~~~~~~~~~~~~~~~~~ln~~gv~~~~~ 151 (445)
T PRK11357 124 PLLGKFIAAGLIIAFMLLHLRSVEGGAA 151 (445)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 33345666666666 8999999987654
No 7
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.65 E-value=2.4e-15 Score=117.23 Aligned_cols=106 Identities=16% Similarity=0.191 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-------
Q psy5072 7 CPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPF------- 79 (114)
Q Consensus 7 ~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~------- 79 (114)
++.++++.+++++++++||++++|++||.|+|+++.+||..||++||.+++. +....+..+.++..++...+
T Consensus 52 ~~li~~i~~l~~als~aEL~s~~P~aGG~Y~~~~~~~g~~~gf~~gW~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (475)
T TIGR03428 52 TWPVVFVGQLLVALNFAELAARYPISGAIYQWSRRMGGEVIGWFAGWFMIIA-QIVTAAAAAIALQVVLPNIWSGFQIIG 130 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHcCccccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 5778999999999999999999999999999999999999999999998764 55666666666665553211
Q ss_pred -CCCCC-C-ChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072 80 -FPTCD-P-PDESVRLLAVCCIYS-CYRYCSSQTLLID 113 (114)
Q Consensus 80 -~p~~~-~-~~~~~~~ia~~~i~~-~~iN~~g~k~~~~ 113 (114)
.|++. + +.++..+++.+++++ +.+|++|+|...|
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~k~~~~ 168 (475)
T TIGR03428 131 EDPTLTSPSGAANAVLLGSVLLVLTTVINCIGVEWMSR 168 (475)
T ss_pred cCccccCCCchHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 11221 1 124567777777777 8999999998764
No 8
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.65 E-value=2.4e-15 Score=115.98 Aligned_cols=100 Identities=18% Similarity=0.210 Sum_probs=83.0
Q ss_pred hHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCCC
Q psy5072 7 CPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDPP 86 (114)
Q Consensus 7 ~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~~~ 86 (114)
+..+++++.++.+++|+|+++++|++||.|.|+++.+||..||+.||.+++ .+....++.+..+++|+.. ++|+. +
T Consensus 45 ~~~i~~~~~~~~a~~~aEl~s~~P~~Gg~y~~~~~~~G~~~gf~~gw~~~~-~~~~~~~~~a~~~~~~l~~-~~p~~--~ 120 (442)
T TIGR00908 45 ATLLVATMYLTFCFSLAELSTMIPTAGGGYGFARRAFGPWGGFLAGTAILI-EFAFAPPAIACFIGAYCES-LFPVG--P 120 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HhccC--c
Confidence 456677788899999999999999999999999999999999999999876 5777888999999999975 55642 2
Q ss_pred hhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072 87 DESVRLLAVCCIYS-CYRYCSSQTLLID 113 (114)
Q Consensus 87 ~~~~~~ia~~~i~~-~~iN~~g~k~~~~ 113 (114)
. ...+.+++++ +.+|++|+|..+|
T Consensus 121 ~---~~~~~~~~~~~~~ln~~g~~~~~~ 145 (442)
T TIGR00908 121 G---WLAALVFYIVFIGINILGVGEAAK 145 (442)
T ss_pred h---hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 3455666666 8999999998765
No 9
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.64 E-value=3.9e-15 Score=114.93 Aligned_cols=103 Identities=15% Similarity=0.144 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCCC
Q psy5072 7 CPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDPP 86 (114)
Q Consensus 7 ~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~~~ 86 (114)
.++++++.+++.++|++||++++|++||.|.|+++ +||.+||..+|.++...+ ....+.+.++.+|+.. ++|..+.
T Consensus 42 ~wli~~~~~l~~al~~aEL~s~~P~~GG~y~y~~~-~g~~~gf~~gw~~~~~~~-~~~~~~~~~~~~y~~~-~~p~~~~- 117 (435)
T PRK10435 42 GWIISIIGAMSLAYVYARLATKNPQQGGPIAYAGE-ISPAFGFQTGVLYYHANW-IGNLAIGITAVSYLST-FFPVLND- 117 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHH-HCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HccccCC-
Confidence 57889999999999999999999999999999999 899999999999876433 4455667778889865 5664432
Q ss_pred hhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072 87 DESVRLLAVCCIYS-CYRYCSSQTLLID 113 (114)
Q Consensus 87 ~~~~~~ia~~~i~~-~~iN~~g~k~~~~ 113 (114)
+....+++++++++ +++|++|+|..++
T Consensus 118 ~~~~~~~~~~i~~~~~~ln~~gvk~~~~ 145 (435)
T PRK10435 118 PIPAGIACIAIVWVFTFVNMLGGTWVSR 145 (435)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 23344556667777 8999999998764
No 10
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.64 E-value=2.9e-15 Score=116.68 Aligned_cols=105 Identities=16% Similarity=0.135 Sum_probs=84.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcccccc-CchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCC-
Q psy5072 7 CPAHINTHDKVGAYCYSELGCMISK-SGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCD- 84 (114)
Q Consensus 7 ~~~~~~l~~~~~al~~aEL~s~~P~-~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~- 84 (114)
.++++++.+++.+++|+|+++++|+ +||.|.|+++.+||..||+.||.+++. .....+..+..+.+|+.. ++|..+
T Consensus 46 ~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~G~~~gf~~gw~~~~~-~~~~~~~~~~~~~~~l~~-~~p~~~~ 123 (473)
T TIGR00905 46 GWIITGVGMLALAFVFAILATKKPELDGGIYAYAREGFGPYIGFMSGWGYWLS-AWIGNVAYAVLLFSALGY-FFPLFGS 123 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcccccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HhhhhcC
Confidence 5788999999999999999999999 999999999999999999999998754 445556667777778764 455322
Q ss_pred CChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072 85 PPDESVRLLAVCCIYS-CYRYCSSQTLLID 113 (114)
Q Consensus 85 ~~~~~~~~ia~~~i~~-~~iN~~g~k~~~~ 113 (114)
.+++...+.+++++++ +.+|.+|+|..+|
T Consensus 124 ~~~~~~~~~~~~~~~~~~~ln~~Gi~~~~~ 153 (473)
T TIGR00905 124 GNPVPSILGASVLLWVFTFLVLRGVRQAAF 153 (473)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 1234556667777777 8999999998775
No 11
>PRK11021 putative transporter; Provisional
Probab=99.63 E-value=4.7e-15 Score=113.47 Aligned_cols=103 Identities=12% Similarity=0.081 Sum_probs=80.6
Q ss_pred chHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCC
Q psy5072 6 VCPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDP 85 (114)
Q Consensus 6 ~~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~~ 85 (114)
..+++++++.++.+++|+|+++++|++||.|.|+++.+||.+||+.||.++.. .+...++......+|+.. ++|.
T Consensus 36 ~~~~i~~~~~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~~gf~~gw~~~~~-~~~~~~~~~~~~~~~~~~-~~~~--- 110 (410)
T PRK11021 36 WAWPLLILLIFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLGRVTGWLFLSV-IPVGLPAALQIAAGFGQA-LFGW--- 110 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHhHHHHhCchhHHHHHHHHHHH-HHhhHHHHHHHHHHHHHH-HcCC---
Confidence 46789999999999999999999999999999999999999999999998753 444444444445667754 4442
Q ss_pred ChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072 86 PDESVRLLAVCCIYS-CYRYCSSQTLLID 113 (114)
Q Consensus 86 ~~~~~~~ia~~~i~~-~~iN~~g~k~~~~ 113 (114)
+.+....++.+++++ +.+|++|+|..+|
T Consensus 111 ~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~ 139 (410)
T PRK11021 111 SSWQLLLAELLTLALLWLLNLRGASSSAN 139 (410)
T ss_pred CCchHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 223345566666777 8999999998765
No 12
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=99.63 E-value=3.3e-15 Score=116.37 Aligned_cols=107 Identities=14% Similarity=0.087 Sum_probs=86.8
Q ss_pred chHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--
Q psy5072 6 VCPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFG----PFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPF-- 79 (114)
Q Consensus 6 ~~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g----~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~-- 79 (114)
..+++++++.++++++++||++++|++||.|.|+++.+| +..+|++||.+++ .+....++.+...++|+...+
T Consensus 51 ~~~~i~gi~~l~~~~~~aEl~s~~P~~Gg~y~~~~~~~g~~~g~~~~f~~gW~~~~-~~~~~~a~~~~~~~~~~~~~~~~ 129 (482)
T TIGR00907 51 WGWIIAGAGSICIALSLAELSSAYPTSGGQYFWSAKLAPPRQMPFASWMTGWFNLA-GQVAGTASTDLSVAQLILGIVSL 129 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHhcccccccceeHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 357889999999999999999999999999999999876 5779999999875 467777888888888886532
Q ss_pred -CCC--CCCChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072 80 -FPT--CDPPDESVRLLAVCCIYS-CYRYCSSQTLLID 113 (114)
Q Consensus 80 -~p~--~~~~~~~~~~ia~~~i~~-~~iN~~g~k~~~~ 113 (114)
.++ +.++++...+++++++++ +.+|++|+|.+.+
T Consensus 130 ~~~~~~~~~~~~~~~~i~~~~~~~~~~in~~g~k~~~~ 167 (482)
T TIGR00907 130 TTPGREYIPTRWHIFGIMIGIHLIHALINSLPTKWLPR 167 (482)
T ss_pred cCCCCCccccCchhhhhHHHHHHHHHHHHHhhHhHHHH
Confidence 222 334456667777777787 9999999998754
No 13
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.61 E-value=9.5e-15 Score=113.04 Aligned_cols=101 Identities=12% Similarity=0.075 Sum_probs=84.6
Q ss_pred chHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCC
Q psy5072 6 VCPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDP 85 (114)
Q Consensus 6 ~~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~~ 85 (114)
..+++++++.++.++|++||++++|++||.|.|+++.+||..||+.||.+++. +....++++.++++|+.. ++|+ .
T Consensus 49 i~~~i~~v~~~~~a~~~aEl~s~~P~~Gg~~~~~~~~~g~~~gf~~gw~~~~~-~~~~~~~~~~~~~~~l~~-~~~~--~ 124 (452)
T TIGR01773 49 LAYLLAGLLVVFIMRMLGEMAVANPDTGSFSTYADDAIGRWAGFTIGWLYWWF-WVLVIPLEAIAAAGILQY-WFPD--I 124 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-hcCc--C
Confidence 36788999999999999999999999999999999999999999999999764 667778888889988864 5553 2
Q ss_pred ChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072 86 PDESVRLLAVCCIYS-CYRYCSSQTLLID 113 (114)
Q Consensus 86 ~~~~~~~ia~~~i~~-~~iN~~g~k~~~~ 113 (114)
+ ...++++++++ +.+|++|+|...|
T Consensus 125 ~---~~~~~~~~~~~~~~~n~~gv~~~~~ 150 (452)
T TIGR01773 125 P---LWLFSLILTIVLTLTNLYSVKSYGE 150 (452)
T ss_pred c---HHHHHHHHHHHHHHHHHHhcchhhH
Confidence 2 34566777777 8999999987654
No 14
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.61 E-value=5.5e-15 Score=117.54 Aligned_cols=107 Identities=22% Similarity=0.285 Sum_probs=85.3
Q ss_pred chHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCC---C
Q psy5072 6 VCPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFP---T 82 (114)
Q Consensus 6 ~~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p---~ 82 (114)
..++++++.+++.++||+|+++++|++||.|.|+++.+||.+||+.||..++ .+....++++.++++|+.+.+.. +
T Consensus 66 ls~liagv~~l~~al~yaElas~~P~sGg~Y~y~~~~~G~~~gfi~GW~~~l-~~~~~~a~va~~~s~yl~~ll~~~~~~ 144 (557)
T TIGR00906 66 LSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSYVTVGELWAFITGWNLIL-EYVIGTAAVARSWSAYFDELLNKQIGQ 144 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeeHHHHhCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 3678999999999999999999999999999999999999999999999865 57788888999999998653310 0
Q ss_pred C-------CCCh--hHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072 83 C-------DPPD--ESVRLLAVCCIYS-CYRYCSSQTLLID 113 (114)
Q Consensus 83 ~-------~~~~--~~~~~ia~~~i~~-~~iN~~g~k~~~~ 113 (114)
. ..+. .....++++++++ +.+|.+|+|..+|
T Consensus 145 ~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~Gik~s~~ 185 (557)
T TIGR00906 145 FRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGVKESAW 185 (557)
T ss_pred cccccccccCCcccccchHHHHHHHHHHHHHHHhchhHHHH
Confidence 0 0010 1234566666777 8999999998764
No 15
>KOG1289|consensus
Probab=99.60 E-value=4e-15 Score=116.59 Aligned_cols=106 Identities=14% Similarity=0.209 Sum_probs=95.6
Q ss_pred hHHHHHHHHHHHHHHHHHhccccccCchhHHhHHH----HhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---h
Q psy5072 7 CPAHINTHDKVGAYCYSELGCMISKSGADYAYIMT----TFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKP---F 79 (114)
Q Consensus 7 ~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~----~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~---~ 79 (114)
+.++++++.++++++++|++|++|++||.|.|..+ .+||..+|++||.+.+ ++.+..|++.++.++.+... .
T Consensus 88 gwlIa~~~~i~va~slaEl~Sa~PtsGgLy~waa~lap~k~~~~~sw~~Gw~~~~-g~~~~~aSi~~S~A~~i~~~v~l~ 166 (550)
T KOG1289|consen 88 GWLIAGFFSICVALSLAELCSAMPTSGGLYFWAAVLAPPKYGPFASWVTGWLNYL-GQATGVASITYSLAQLILGAVSLT 166 (550)
T ss_pred HHHHHHHHHHHHHhHHHHHHhhCCCCCcHHHHHHHhcCcchhhHHHHHHHHHHHH-HHHhhchhhhHHHHHHHHHHHhhc
Confidence 46899999999999999999999999999999984 8899999999999865 68899999999999988763 3
Q ss_pred CCCCCCChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072 80 FPTCDPPDESVRLLAVCCIYS-CYRYCSSQTLLID 113 (114)
Q Consensus 80 ~p~~~~~~~~~~~ia~~~i~~-~~iN~~g~k~~~~ 113 (114)
.|++++++++...++.+++.+ .++|+++.|+++|
T Consensus 167 np~y~~~~~~~~~v~~ai~~v~~lln~~p~r~l~~ 201 (550)
T KOG1289|consen 167 NPNYEPTNYHQFGVFEAILFVHGLLNSLPTRVLAR 201 (550)
T ss_pred CCCCcccceEeehHHHHHHHHHHHHhcCCcHHHHH
Confidence 678888889999999999999 9999999999876
No 16
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.60 E-value=1.3e-14 Score=113.00 Aligned_cols=101 Identities=13% Similarity=0.114 Sum_probs=78.7
Q ss_pred chHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCC
Q psy5072 6 VCPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDP 85 (114)
Q Consensus 6 ~~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~~ 85 (114)
.++.+++++++++++||+||++++|++||.|.|+++.+||..||+.||.+++. +....++...+.+.|+. .++|+ .
T Consensus 52 l~~~i~~~~~~~~~~~~aELas~~P~aGG~y~y~~~~~g~~~gf~~gw~~~~~-~~~~~~~~~~~~~~~~~-~~~p~--~ 127 (471)
T PRK11387 52 LAYLIGALVVYLVMQCLGELSVAMPETGAFHVYAARYLGPATGYTVAWLYWLT-WTVALGSSLTAAGFCMQ-YWFPQ--V 127 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhcChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-hccCc--C
Confidence 46789999999999999999999999999999999999999999999999764 55666666666666654 34553 2
Q ss_pred ChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072 86 PDESVRLLAVCCIYS-CYRYCSSQTLLID 113 (114)
Q Consensus 86 ~~~~~~~ia~~~i~~-~~iN~~g~k~~~~ 113 (114)
+.+ ....+++++ +.+|++|+|...|
T Consensus 128 ~~~---~~~~~~~~~~~~in~~gvk~~~~ 153 (471)
T PRK11387 128 PVW---PWCLLFCALIFGLNVVSTRFFAE 153 (471)
T ss_pred cHH---HHHHHHHHHHHHHHHHhHHHHHH
Confidence 222 233344455 8999999998653
No 17
>PRK10249 phenylalanine transporter; Provisional
Probab=99.60 E-value=1.4e-14 Score=112.57 Aligned_cols=101 Identities=15% Similarity=0.115 Sum_probs=81.7
Q ss_pred chHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCC
Q psy5072 6 VCPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDP 85 (114)
Q Consensus 6 ~~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~~ 85 (114)
..+++++++++++++|++|+++++|++||.|.|+++.+||.+||+.||.+++. +....++...+.+.|+.. ++|+.
T Consensus 58 l~~li~~~~~~~~~~~~aEl~~~~P~~Gg~~~y~~~~~g~~~gf~~gw~~~~~-~~~~~~~~~~a~~~~~~~-~~~~~-- 133 (458)
T PRK10249 58 LGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYKYWGPFAGFLSGWNYWVM-FVLVGMAELTAAGIYMQY-WFPDV-- 133 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-cCCcC--
Confidence 35789999999999999999999999999999999999999999999998775 445566777778888753 45532
Q ss_pred ChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072 86 PDESVRLLAVCCIYS-CYRYCSSQTLLID 113 (114)
Q Consensus 86 ~~~~~~~ia~~~i~~-~~iN~~g~k~~~~ 113 (114)
+ ....+.+++++ +.+|++|+|..+|
T Consensus 134 ~---~~~~~~~~~~l~~~lN~~gv~~~~~ 159 (458)
T PRK10249 134 P---TWIWAAAFFIIINAVNLVNVRLYGE 159 (458)
T ss_pred c---HHHHHHHHHHHHHHHHHhcchhhhh
Confidence 2 23445566666 8999999998764
No 18
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.60 E-value=1.6e-14 Score=111.95 Aligned_cols=101 Identities=9% Similarity=0.047 Sum_probs=81.3
Q ss_pred chHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCC
Q psy5072 6 VCPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDP 85 (114)
Q Consensus 6 ~~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~~ 85 (114)
.++++++++.++.++|++||++++|++||.|.|.++.+||.+||..||.+++. +....+.++.+.+.++.. +.|+
T Consensus 29 l~~~i~gi~~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~~-~~~~~~~~~~~~~~~~~~-~~~~--- 103 (446)
T PRK10197 29 LAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWF-WVLVIPLEANIAAMILHS-WVPG--- 103 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh-cccc---
Confidence 46789999999999999999999999999999999999999999999999764 555666666666666543 3342
Q ss_pred ChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072 86 PDESVRLLAVCCIYS-CYRYCSSQTLLID 113 (114)
Q Consensus 86 ~~~~~~~ia~~~i~~-~~iN~~g~k~~~~ 113 (114)
.....++.+++++ +.+|++|+|...+
T Consensus 104 --~~~~~~~~~~l~~~~~lN~~gv~~~~~ 130 (446)
T PRK10197 104 --IPIWLFSLVITLALTGSNLLSVKNYGE 130 (446)
T ss_pred --CcHHHHHHHHHHHHHHHHHHhhHHHhh
Confidence 2235667777777 9999999998654
No 19
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.60 E-value=1.8e-14 Score=111.95 Aligned_cols=101 Identities=11% Similarity=0.044 Sum_probs=83.0
Q ss_pred chHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCC
Q psy5072 6 VCPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDP 85 (114)
Q Consensus 6 ~~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~~ 85 (114)
..+.+++++.+++++|++|+++++|++||.|+|.++.+||..||+.||.+++. +....++...++++|+.. ++|+ .
T Consensus 49 ~~~~i~gi~~~~v~~s~aEl~s~~P~aGg~y~~~~~~~g~~~gf~~Gw~~~~~-~~~~~~~~~~~~~~~~~~-~~p~--~ 124 (456)
T PRK10238 49 LGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYWGSFAGFASGWNYWVL-YVLVAMAELTAVGKYIQF-WYPE--I 124 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-hcCc--C
Confidence 35789999999999999999999999999999999999999999999999764 667778888889999853 5553 2
Q ss_pred ChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072 86 PDESVRLLAVCCIYS-CYRYCSSQTLLID 113 (114)
Q Consensus 86 ~~~~~~~ia~~~i~~-~~iN~~g~k~~~~ 113 (114)
+.+ ....+++++ +.+|++|+|...|
T Consensus 125 ~~~---~~~~i~~~~~~~lN~~gv~~~~~ 150 (456)
T PRK10238 125 PTW---VSAAVFFVVINAINLTNVKVFGE 150 (456)
T ss_pred cHH---HHHHHHHHHHHHHHHHhHHHHHH
Confidence 333 334444556 8999999998764
No 20
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.58 E-value=2e-14 Score=119.98 Aligned_cols=106 Identities=12% Similarity=0.086 Sum_probs=88.8
Q ss_pred chHHHHHHHHHHHHHHHHHhccc-cccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCC-
Q psy5072 6 VCPAHINTHDKVGAYCYSELGCM-ISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTC- 83 (114)
Q Consensus 6 ~~~~~~~l~~~~~al~~aEL~s~-~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~- 83 (114)
+.++++++++++.++||+|+++. .|++||.|.|+++++|+..||..||..++ ....+.|.++.+|++|+...+ +..
T Consensus 115 l~~~la~~vtlltaLS~seiaTng~p~aGG~Y~yisralGp~~Gf~iG~~~~l-a~~va~A~~~~Gf~eyl~~lf-~~~~ 192 (953)
T TIGR00930 115 LIILLCCCVTTITGLSMSAIATNGVVKGGGAYYLISRSLGPEFGGSIGLIFAF-ANAVAVAMYVVGFAETVLDLL-RENG 192 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHhCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHh-hhcc
Confidence 46889999999999999999998 99999999999999999999999999865 477889999999999998644 321
Q ss_pred ----CCChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072 84 ----DPPDESVRLLAVCCIYS-CYRYCSSQTLLID 113 (114)
Q Consensus 84 ----~~~~~~~~~ia~~~i~~-~~iN~~g~k~~~~ 113 (114)
..+....++++.+++++ +++|++|+|+.+|
T Consensus 193 ~~~~~~~~~~~~iia~i~l~ll~~In~~Gvk~~ak 227 (953)
T TIGR00930 193 SKIMVDPINDIRIYGTVTVVVLLGISFAGMEWENK 227 (953)
T ss_pred cccccCccccchHHHHHHHHHHHHHHHhhHHHHHH
Confidence 11122356778877877 9999999998775
No 21
>PRK15049 L-asparagine permease; Provisional
Probab=99.58 E-value=4.1e-14 Score=111.21 Aligned_cols=102 Identities=11% Similarity=0.084 Sum_probs=78.4
Q ss_pred chHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCC-
Q psy5072 6 VCPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCD- 84 (114)
Q Consensus 6 ~~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~- 84 (114)
.++++++++.+++++|++||++++|++||.|.|+++.+||..||++||.+++. +....+....+.+.|... + +.+.
T Consensus 65 l~~li~~i~~~~v~~slaELas~~P~aGg~y~y~~~~~G~~~gf~~GW~~~l~-~~~~~~~~~~a~~~~~~~-~-~~~~~ 141 (499)
T PRK15049 65 LVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREFLGEKAAYVAGWMYFIN-WAMTGIVDITAVALYMHY-W-GAFGG 141 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-h-ccCCC
Confidence 46789999999999999999999999999999999999999999999999764 444444444456666642 2 2221
Q ss_pred CChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072 85 PPDESVRLLAVCCIYS-CYRYCSSQTLLID 113 (114)
Q Consensus 85 ~~~~~~~~ia~~~i~~-~~iN~~g~k~~~~ 113 (114)
.+. ...+.+++++ +.+|++|+|...|
T Consensus 142 ~~~---~~~~~~~~~l~~~iN~~gvk~~~~ 168 (499)
T PRK15049 142 VPQ---WVFALAALTIVGTMNMIGVKWFAE 168 (499)
T ss_pred CcH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233 3446666667 8999999998764
No 22
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.57 E-value=4.4e-14 Score=109.98 Aligned_cols=105 Identities=16% Similarity=0.153 Sum_probs=78.9
Q ss_pred hHHHHHHHHHHHHHHHHHhccccccC-chhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCC
Q psy5072 7 CPAHINTHDKVGAYCYSELGCMISKS-GADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDP 85 (114)
Q Consensus 7 ~~~~~~l~~~~~al~~aEL~s~~P~~-GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~~ 85 (114)
.+.++++..++.+++++||++++|++ ||.|.|.++.+||..||+.||.+|+.. .......+....+|+.. ++|....
T Consensus 40 ~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~~~gf~~gw~~w~~~-~~~~~~~~~~~~~~~~~-~~p~~~~ 117 (468)
T TIGR03810 40 GWVITGVGMLALAFSFQNLANKKPELDGGVYSYAKAGFGPFMGFISAWGYWLSA-WLGNVAYATLLFSTLGY-FFPIFGG 117 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-hcccccC
Confidence 57899999999999999999999997 599999999999999999999998753 33444455555666643 4564322
Q ss_pred -ChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072 86 -PDESVRLLAVCCIYS-CYRYCSSQTLLID 113 (114)
Q Consensus 86 -~~~~~~~ia~~~i~~-~~iN~~g~k~~~~ 113 (114)
++.....++.+++++ +.+|.+|+|..+|
T Consensus 118 ~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~ 147 (468)
T TIGR03810 118 GNNPPSIIGASVLLWCVHFLVLRGVEGAAF 147 (468)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 222334555556666 8999999997654
No 23
>PRK10746 putative transport protein YifK; Provisional
Probab=99.56 E-value=5.2e-14 Score=109.59 Aligned_cols=101 Identities=11% Similarity=0.139 Sum_probs=81.8
Q ss_pred chHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCC
Q psy5072 6 VCPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDP 85 (114)
Q Consensus 6 ~~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~~ 85 (114)
..+++++++.++++++++||++++|++||.|.|+++.+||.+||..||.+++. +....++...+.++|+.. ++|+.
T Consensus 47 l~~~i~g~~~~~v~~~~aEl~~~~P~sGg~~~y~~~~~g~~~Gf~~gw~~~~~-~~~~~~~~~~a~~~~l~~-~~p~~-- 122 (461)
T PRK10746 47 LAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHRYMSPFFGYLTAWSYWFM-WMAVGISEITAIGVYVQF-WFPEM-- 122 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-ccCCC--
Confidence 36788999999999999999999999999999999999999999999999765 555666777788889854 55642
Q ss_pred ChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072 86 PDESVRLLAVCCIYS-CYRYCSSQTLLID 113 (114)
Q Consensus 86 ~~~~~~~ia~~~i~~-~~iN~~g~k~~~~ 113 (114)
+. .....+++++ +.+|++|+|...|
T Consensus 123 ~~---~~~~~~~~~~~~~lN~~gv~~~~~ 148 (461)
T PRK10746 123 AQ---WIPALIAVALVALANLAAVRLYGE 148 (461)
T ss_pred ch---HHHHHHHHHHHHHHHHHhHHHHHH
Confidence 22 2344445566 8999999998764
No 24
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.56 E-value=3.7e-14 Score=110.00 Aligned_cols=101 Identities=16% Similarity=0.232 Sum_probs=80.5
Q ss_pred chHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCC
Q psy5072 6 VCPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDP 85 (114)
Q Consensus 6 ~~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~~ 85 (114)
..+++++++.++.++|++|+++++|++||.|.|.++.+||..||+.||.+++. +....+....+++.|... ++|+.
T Consensus 46 l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~-- 121 (457)
T PRK10580 46 LAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQENLGPLAGYITGWTYCFE-ILIVAIADVTAFGIYMGV-WFPTV-- 121 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-hCCCC--
Confidence 46889999999999999999999999999999999999999999999998764 555566667788888854 45532
Q ss_pred ChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072 86 PDESVRLLAVCCIYS-CYRYCSSQTLLID 113 (114)
Q Consensus 86 ~~~~~~~ia~~~i~~-~~iN~~g~k~~~~ 113 (114)
+.+ ..+++++++ +.+|++|+|..+|
T Consensus 122 ~~~---~~~~~~~~l~~~ln~~gv~~~~~ 147 (457)
T PRK10580 122 PHW---IWVLSVVLIICAVNLMSVKVFGE 147 (457)
T ss_pred ChH---HHHHHHHHHHHHHHHccchhHHH
Confidence 222 234445556 8999999998764
No 25
>PRK10836 lysine transporter; Provisional
Probab=99.52 E-value=1.8e-13 Score=107.06 Aligned_cols=101 Identities=14% Similarity=0.050 Sum_probs=76.3
Q ss_pred chHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCC
Q psy5072 6 VCPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDP 85 (114)
Q Consensus 6 ~~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~~ 85 (114)
..+++++++++++++||+||++++|++||.|.|.++.+||..||+.||.+++ .+....+. ....+++..+.++|+ .
T Consensus 53 ~a~~i~g~~~~~~al~~aEL~s~~P~sGg~y~y~~~~~g~~~gf~~Gw~~~~-~~~~~~a~-~~~a~~~~~~~~~~~--~ 128 (489)
T PRK10836 53 LSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVEEGFGFALGWNYWY-NWAVTIAV-DLVAAQLVMSWWFPD--T 128 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHcChHHHHHHHHHHHH-HHHHHHHH-HHHHHHHHhhhcCCC--C
Confidence 4678999999999999999999999999999999999999999999999876 45555443 344444444445553 2
Q ss_pred ChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072 86 PDESVRLLAVCCIYS-CYRYCSSQTLLID 113 (114)
Q Consensus 86 ~~~~~~~ia~~~i~~-~~iN~~g~k~~~~ 113 (114)
+.+ ..+.+++.+ +.+|++|+|...+
T Consensus 129 ~~~---~~~~~~~~~~~~lN~~gv~~~~~ 154 (489)
T PRK10836 129 PGW---IWSALFLGVIFLLNYISVRGFGE 154 (489)
T ss_pred chH---HHHHHHHHHHHHHHHHcchhhhh
Confidence 222 334455556 8999999987654
No 26
>TIGR00909 2A0306 amino acid transporter.
Probab=99.51 E-value=1.2e-13 Score=105.89 Aligned_cols=105 Identities=22% Similarity=0.244 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCC--CC
Q psy5072 7 CPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPT--CD 84 (114)
Q Consensus 7 ~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~--~~ 84 (114)
.+.++++..++.+++++|+++++|++||.|.|+++.+||..||+.+|.+++ .++...+..+..+++|+...+ +. .+
T Consensus 41 ~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~~g~~~gw~~~~-~~~~~~a~~~~~~~~~~~~~~-~~~~~~ 118 (429)
T TIGR00909 41 SFVLAGLTALFIALVYAELAAMLPVAGSPYTYAYEAMGELTAFIIGWSLWL-EYGVAVAAVAVGWGGYLQEFL-PGVGLD 118 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCcceeeHHHHhCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-HHcccc
Confidence 456789999999999999999999999999999999999999999999866 467888999999999986533 31 11
Q ss_pred CChhH---------HHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072 85 PPDES---------VRLLAVCCIYS-CYRYCSSQTLLID 113 (114)
Q Consensus 85 ~~~~~---------~~~ia~~~i~~-~~iN~~g~k~~~~ 113 (114)
.|.+. ....+++++++ +.+|++|.|...|
T Consensus 119 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~ 157 (429)
T TIGR00909 119 LPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESGK 157 (429)
T ss_pred CchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHHHH
Confidence 12111 11345556666 8999999998765
No 27
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=99.50 E-value=2.1e-13 Score=107.47 Aligned_cols=102 Identities=15% Similarity=0.166 Sum_probs=71.4
Q ss_pred HHHHHH-HHHHHHHHHHhccccc-cCchhHHhHHHHhchHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhhCCCC
Q psy5072 9 AHINTH-DKVGAYCYSELGCMIS-KSGADYAYIMTTFGPFLAFIRLWIECMIV---RPCSQAIVALTFSIYALKPFFPTC 83 (114)
Q Consensus 9 ~~~~l~-~~~~al~~aEL~s~~P-~~GG~y~~~~~~~g~~~gfl~gw~~~~~~---~~~~~a~~a~~~~~yl~~~~~p~~ 83 (114)
++++++ .++.+++++||++++| ++||.|.|+++.+||++||+.+|.+|+.. .+... ....+...|... +|+.
T Consensus 40 i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv~~a~G~~~Gf~~~~~~W~~~~~~~~~~~-~~~~~~~~y~~~--~~~~ 116 (507)
T TIGR00910 40 LLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNTLGERFGFAAIFFGWFQIAIGFIPMI-YFILGALSYILK--FPAL 116 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHcccCCCCCCeeeehhhccCccHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc--Cchh
Confidence 344444 4679999999999997 99999999999999999999888776532 22211 122333455542 3444
Q ss_pred CCChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072 84 DPPDESVRLLAVCCIYS-CYRYCSSQTLLID 113 (114)
Q Consensus 84 ~~~~~~~~~ia~~~i~~-~~iN~~g~k~~~~ 113 (114)
+.+.+...++.++++++ +++|+.|.|..+|
T Consensus 117 ~~~~~~~~i~~l~i~~~~t~~n~~G~k~~~~ 147 (507)
T TIGR00910 117 NEDPIIKFIAALIIFWALAFSQFGGTKRTAK 147 (507)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 34455555566667777 8999999988764
No 28
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.49 E-value=3.2e-13 Score=103.71 Aligned_cols=104 Identities=21% Similarity=0.229 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCC---CC
Q psy5072 8 PAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPT---CD 84 (114)
Q Consensus 8 ~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~---~~ 84 (114)
.++++++..+.+++++|+++.+|++||.|.|+++.+||..+|..+|.+++ .+....++.+..+++|+.. ++|. ..
T Consensus 51 ~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 128 (466)
T COG0531 51 WLIAGIIILFLALSYAELSSAIPSAGGAYAYAKRALGPRLGFLAGWLYLL-AYVIALAAIAIGAASYLSY-LFPGPGLLS 128 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCeeeehhhhcCcchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-hcCcchhhc
Confidence 57888889999999999999999999999999999999999999999976 4678888889999988764 5553 22
Q ss_pred CChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072 85 PPDESVRLLAVCCIYS-CYRYCSSQTLLID 113 (114)
Q Consensus 85 ~~~~~~~~ia~~~i~~-~~iN~~g~k~~~~ 113 (114)
.+.+....++.+.+++ +++|++|+|..+|
T Consensus 129 ~~~~~~~~~~~~~~~~~~~ln~~G~~~~~~ 158 (466)
T COG0531 129 IGPLLIILIALALIALLTLLNLRGIKASAK 158 (466)
T ss_pred CCchHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 2226677888888888 9999999998764
No 29
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.48 E-value=4.9e-13 Score=104.07 Aligned_cols=101 Identities=8% Similarity=-0.066 Sum_probs=77.7
Q ss_pred chHHHHHHHHHHHHHHHHHhccccccCc-hhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCC
Q psy5072 6 VCPAHINTHDKVGAYCYSELGCMISKSG-ADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCD 84 (114)
Q Consensus 6 ~~~~~~~l~~~~~al~~aEL~s~~P~~G-G~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~ 84 (114)
..+++++++.++.++|++||++++|++| |.|.|+++.+||..||++||.+++. +....++...+.++|+.. ++|+.
T Consensus 40 ~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g~~~gf~~gw~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~- 116 (478)
T TIGR00913 40 IGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVDPAFGFAVGWNYWLQ-WLIVLPLELVTASMTIQY-WTDKV- 116 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-cCCCC-
Confidence 3577899999999999999999999655 5667999999999999999999764 667778888888888853 44422
Q ss_pred CChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072 85 PPDESVRLLAVCCIYS-CYRYCSSQTLLID 113 (114)
Q Consensus 85 ~~~~~~~~ia~~~i~~-~~iN~~g~k~~~~ 113 (114)
+.+ ....+++++ +++|++|+|...|
T Consensus 117 -~~~---~~~~~~~~~~~~in~~gv~~~~~ 142 (478)
T TIGR00913 117 -NPA---VWIAIFYVFIVIINLFGVKGYGE 142 (478)
T ss_pred -CHH---HHHHHHHHHHHHHHHhcchHHHH
Confidence 111 112234455 8999999998754
No 30
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=99.48 E-value=4.5e-13 Score=104.39 Aligned_cols=105 Identities=10% Similarity=0.075 Sum_probs=69.5
Q ss_pred HHHHHHHH-HHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhh--hCC
Q psy5072 8 PAHINTHD-KVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIV---RPCSQAIVALTFSIYALKP--FFP 81 (114)
Q Consensus 8 ~~~~~l~~-~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~---~~~~~a~~a~~~~~yl~~~--~~p 81 (114)
.++++++. +..+++++||++++|++||.|.|+++.+||.+||+.+|.+|+.. .+...+..+..+ .|.... ..|
T Consensus 36 ~~i~~~~~~ip~al~~aEL~~~~P~~GG~y~~~~~a~G~~~gf~~gw~~w~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~ 114 (474)
T TIGR03813 36 YLFAAIFFLVPVSLVAAELATAWPEKGGVFRWVGEAFGARWGFLAIFMLWAQVTIWFPTVLTFGAVSL-AFIGPEATVDE 114 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCCCceeeHhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCccccCc
Confidence 45666655 47999999999999999999999999999999999999887642 222222211121 122110 112
Q ss_pred CCCCChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072 82 TCDPPDESVRLLAVCCIYS-CYRYCSSQTLLID 113 (114)
Q Consensus 82 ~~~~~~~~~~~ia~~~i~~-~~iN~~g~k~~~~ 113 (114)
....+.+....+.++++++ +++|++|+|..+|
T Consensus 115 ~~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~ 147 (474)
T TIGR03813 115 SLAGNKLYVLVSVLFVYWLATFIALRGVAAFTK 147 (474)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 2222334444556666667 8999999987654
No 31
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.42 E-value=3.1e-12 Score=99.69 Aligned_cols=100 Identities=11% Similarity=0.090 Sum_probs=80.0
Q ss_pred hHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCCC
Q psy5072 7 CPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDPP 86 (114)
Q Consensus 7 ~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~~~ 86 (114)
.+.+++++.++++++++|++++.|..|+.|.|.++.+||..||+.||.+++. +....++.+.+++.|+.. ++|+. +
T Consensus 58 ~~~i~~i~~~~~~~s~aEl~s~~~~~~~~~~ya~~~~g~~~gf~~gW~~~~~-~~~~~~a~~~a~~~~~~~-~~p~~--~ 133 (469)
T PRK11049 58 VYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDLLGPWAGYFTGWTYWFC-WVVTGIADVVAITAYAQF-WFPDL--S 133 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-hcCCC--c
Confidence 5678899999999999999999999999999999999999999999999865 444555567778888864 55642 2
Q ss_pred hhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072 87 DESVRLLAVCCIYS-CYRYCSSQTLLID 113 (114)
Q Consensus 87 ~~~~~~ia~~~i~~-~~iN~~g~k~~~~ 113 (114)
. ...+.+++++ +.+|++|+|..+|
T Consensus 134 ~---~~~~~~~~~~~~~iN~~g~~~~~~ 158 (469)
T PRK11049 134 D---WVASLAVVLLLLSLNLATVKMFGE 158 (469)
T ss_pred H---HHHHHHHHHHHHHHHHHhHHHHHH
Confidence 2 2344555666 8999999998764
No 32
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=99.40 E-value=5.1e-12 Score=99.13 Aligned_cols=104 Identities=17% Similarity=0.168 Sum_probs=64.5
Q ss_pred HHHHHHH-HHHHHHHHHHhcccccc-CchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHH----HHHH-----HHhh
Q psy5072 8 PAHINTH-DKVGAYCYSELGCMISK-SGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVA----LTFS-----IYAL 76 (114)
Q Consensus 8 ~~~~~l~-~~~~al~~aEL~s~~P~-~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a----~~~~-----~yl~ 76 (114)
+.+++++ .++.+++++||++++|+ +||.|.|+++.+||++||+.+|..+. .+....+..+ .... .|..
T Consensus 43 ~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~G~~~gf~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (496)
T PRK15238 43 YILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSVGPKFAFIGTFMWFA-SYIIWMVSTASKIWIPFSTFIFGKDTT 121 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHcCchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCcchh
Confidence 4556655 46899999999999997 89999999999999999999987543 2222221111 1111 1111
Q ss_pred hhh-CCCCCCChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072 77 KPF-FPTCDPPDESVRLLAVCCIYS-CYRYCSSQTLLID 113 (114)
Q Consensus 77 ~~~-~p~~~~~~~~~~~ia~~~i~~-~~iN~~g~k~~~~ 113 (114)
+.+ .++.. +......+++..+++ +.+|.+|+|..+|
T Consensus 122 ~~~~~~~~~-~~~~~~~~a~~~~~~~t~vn~~g~~~~~~ 159 (496)
T PRK15238 122 QTWHFLGLN-STQVVGILAVIWMILVTFVASKGINKIAK 159 (496)
T ss_pred hhhhhhccc-chHHHHHHHHHHHHHHHHHHccchHHHHH
Confidence 100 00001 111223445555556 8999999998765
No 33
>PHA02764 hypothetical protein; Provisional
Probab=99.30 E-value=2.5e-12 Score=95.78 Aligned_cols=60 Identities=23% Similarity=0.129 Sum_probs=53.2
Q ss_pred chHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHH
Q psy5072 6 VCPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAI 66 (114)
Q Consensus 6 ~~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~ 66 (114)
.+.+++++++++.++||+|+++++|++||.|.|.+|++||..|++.||..|.. .+.+.++
T Consensus 50 LAWLLGGLlALPgAL~YAELGSAmPrAGGdYVYISRAFGP~~GFLvG~a~WLt-l~~G~Pa 109 (399)
T PHA02764 50 FAILIGAVFEIPLLLMYYKLTTKFPLNGGDYAYIRTAFSSKFYTIFGISLWLT-YVLSQPI 109 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEhHHhhCccHHHHHHHHHHHH-HHhhcch
Confidence 57889999999999999999999999999999999999999999999987653 4455443
No 34
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.20 E-value=2.2e-10 Score=86.89 Aligned_cols=105 Identities=6% Similarity=-0.223 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCCC
Q psy5072 7 CPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDPP 86 (114)
Q Consensus 7 ~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~~~ 86 (114)
...++++.+...+++++|+++++|++||.|.|.++.+||..+++.+|..++..+ ...+++....++++.. +++....+
T Consensus 33 ~~i~~~~~~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~~~~~~~-~~~~ay~~~~~~~l~~-~~~~~~~~ 110 (381)
T TIGR00837 33 LLILLWFLMLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLSLLFVLY-ILTYAYISGGGSILSR-LIGEYFGF 110 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHHHHHHHH-HHHHHHHHccHHHHHH-HHHHhcCC
Confidence 356788999999999999999999999999999999999999999998876544 3444555666677655 33321111
Q ss_pred hhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072 87 DESVRLLAVCCIYS-CYRYCSSQTLLID 113 (114)
Q Consensus 87 ~~~~~~ia~~~i~~-~~iN~~g~k~~~~ 113 (114)
....+...++..++ +.+|..|.|...|
T Consensus 111 ~~~~~~~~~~~~~v~~~l~~~G~~~~~~ 138 (381)
T TIGR00837 111 PWSARAIVLIFTVLFGSFVWLSTSAVDR 138 (381)
T ss_pred CccHHHHHHHHHHHHHHHHHhchhHHHH
Confidence 12234455555556 8999999987654
No 35
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=99.17 E-value=2.7e-11 Score=94.46 Aligned_cols=106 Identities=17% Similarity=0.106 Sum_probs=80.5
Q ss_pred chHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--CCCC
Q psy5072 6 VCPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPF--FPTC 83 (114)
Q Consensus 6 ~~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~--~p~~ 83 (114)
..+++++++.++.+.+++|+++.+|++||.|.|+++..||..||..||.+++ .+....+....+.+.++.. + +++.
T Consensus 33 la~li~~i~~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~~Gf~~gw~y~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~ 110 (478)
T PF00324_consen 33 LAYLIAGIIVLLVALSLAEMSRRFPSAGGFYAYASRGLGPALGFAAGWAYWL-SYIAAIAAEATAAGSFLQF-WGYFPGL 110 (478)
T ss_pred hHhHHHHHHHHhhhhhhhhhhhhhccccchhhhhhhccCCcCCceeeHHHHH-HHHHHHHhhhhhhhhhhcc-ccccccc
Confidence 4688999999999999999999999999999999999999999999999866 4667777777666655543 3 3332
Q ss_pred CCChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072 84 DPPDESVRLLAVCCIYS-CYRYCSSQTLLID 113 (114)
Q Consensus 84 ~~~~~~~~~ia~~~i~~-~~iN~~g~k~~~~ 113 (114)
..+......++.+.+++ +.+|++|+|..+|
T Consensus 111 ~~~~~~~~~~~~i~~~~~~~l~~~gv~~~~~ 141 (478)
T PF00324_consen 111 PSTWVWGILIAIIFILLITLLNLFGVRVSGK 141 (478)
T ss_pred cccccccchhhhhhhhhhhhhhhhhhhccch
Confidence 10111111345556666 8999999998765
No 36
>KOG1286|consensus
Probab=99.09 E-value=5.2e-10 Score=89.22 Aligned_cols=72 Identities=22% Similarity=0.198 Sum_probs=66.8
Q ss_pred chHHHHHHHHHHHHHHHHHhccccccC-chhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy5072 6 VCPAHINTHDKVGAYCYSELGCMISKS-GADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKP 78 (114)
Q Consensus 6 ~~~~~~~l~~~~~al~~aEL~s~~P~~-GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~ 78 (114)
+.++++|+.+++.++||+|++.++|++ |+.|.|.++..||.+||..||.+++ .+....|+++.+.+.|+...
T Consensus 68 isf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~~ya~~~i~e~~aF~~gWny~l-~y~i~~a~e~~a~s~~~~~w 140 (554)
T KOG1286|consen 68 ISFIIAGIAALLSALCLGEFAVRFPVSAGSFYTYAYRFVGESLAFAIGWNYLL-EYVIGLAAEARAWSSYLDYW 140 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHheecccccccceeeeeeeeCcHHHHHHHHHHHH-HHHHhhhHHHHHHHHHHHHH
Confidence 578999999999999999999999995 9999999999999999999999876 57899999999999999763
No 37
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=98.96 E-value=1.6e-08 Score=78.53 Aligned_cols=100 Identities=15% Similarity=0.147 Sum_probs=85.7
Q ss_pred chHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCC
Q psy5072 6 VCPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDP 85 (114)
Q Consensus 6 ~~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~~ 85 (114)
...+++|++..++.-+..|+.-.=|++|+--.|+++.+||..||++||.+|+. +....-+...+.+.|+.. ++|+.
T Consensus 50 LaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~~lG~~Agf~tgW~YW~~-wv~v~~ae~tAi~~y~~~-WfP~v-- 125 (462)
T COG1113 50 LAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYARKYLGPWAGFLTGWTYWFF-WVLVGIAELTAIGIYLQF-WFPDV-- 125 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHhcchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-hcCCC--
Confidence 35688999999999999999999999999999999999999999999999875 677777889999999964 78864
Q ss_pred ChhHHHHHHHHHHHH-HHHHHHhhhhhh
Q psy5072 86 PDESVRLLAVCCIYS-CYRYCSSQTLLI 112 (114)
Q Consensus 86 ~~~~~~~ia~~~i~~-~~iN~~g~k~~~ 112 (114)
|. .+.+.+.+++ +.+|..++|+..
T Consensus 126 P~---Wv~al~~~~l~~~~NL~sVk~FG 150 (462)
T COG1113 126 PQ---WVFALAAVVLLLAVNLISVKVFG 150 (462)
T ss_pred cH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 3556666666 899999999864
No 38
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=98.90 E-value=3.8e-08 Score=74.16 Aligned_cols=104 Identities=9% Similarity=-0.001 Sum_probs=79.9
Q ss_pred cccchHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCC
Q psy5072 3 HVHVCPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPT 82 (114)
Q Consensus 3 ~~~~~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~ 82 (114)
+.-...+++++..+..+++++|+++++|+. +.+.|.++.+||..|++.+|.+.. ......+.....+++++...+.|+
T Consensus 35 ~~wi~~ll~~~~~~~~~~~~~~l~~~~p~~-~~~~~~~~~~Gk~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~ 112 (359)
T TIGR00912 35 DGWISIILGGLIIIFLLCLMIKIMSKFPEK-NFSEILSKYLGKILGRLLSILFIL-YFFLIAAYLIRIFADFIKTYLLPR 112 (359)
T ss_pred CeeHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344578899999999999999999999987 699999999999999999998754 455556666677777775433443
Q ss_pred CCCChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072 83 CDPPDESVRLLAVCCIYS-CYRYCSSQTLLID 113 (114)
Q Consensus 83 ~~~~~~~~~~ia~~~i~~-~~iN~~g~k~~~~ 113 (114)
.| ...+....+++ +.+|..|.|..+|
T Consensus 113 --tp---~~~~~l~~l~~~~~~~~~Gi~~i~r 139 (359)
T TIGR00912 113 --TP---IIVIIILIIIVSIYIVRKGIEVLLR 139 (359)
T ss_pred --CC---HHHHHHHHHHHHHHHHHccHHHHHH
Confidence 22 23445555556 7889999998876
No 39
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=98.87 E-value=3.5e-08 Score=78.05 Aligned_cols=101 Identities=13% Similarity=0.055 Sum_probs=80.6
Q ss_pred chHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCC
Q psy5072 6 VCPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDP 85 (114)
Q Consensus 6 ~~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~~ 85 (114)
..+++.|++..++..|..||++.+|.+|+-..|..|-.+|-+||..||.+|+. +....++.-.+.+..+. .++|+..
T Consensus 82 i~y~i~G~~vy~vm~sLGEma~~~P~sGsF~~ya~rfvdpa~GFa~gWnYw~~-w~v~~~~El~aa~~vi~-yW~p~~v- 158 (541)
T COG0833 82 IAYLIIGIMVYFVMQSLGELAVFYPVSGSFSTYATRFVDPAFGFALGWNYWLN-WAVTLPLELTAASLVIQ-YWFPDTV- 158 (541)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhcCchHHHHHHHHHHHH-HHHHhhHHHHHHHHhhh-hhcCCCC-
Confidence 35788999999999999999999999999999999999999999999999875 77888888777776664 4666431
Q ss_pred ChhHHHHHHHHHHHH-HHHHHHhhhhhh
Q psy5072 86 PDESVRLLAVCCIYS-CYRYCSSQTLLI 112 (114)
Q Consensus 86 ~~~~~~~ia~~~i~~-~~iN~~g~k~~~ 112 (114)
| ......+..++ +.+|.+|+|...
T Consensus 159 ~---~~~w~~iF~~~i~~iN~~~Vk~fG 183 (541)
T COG0833 159 P---PWIWIAIFLVLIFLLNLFGVKGFG 183 (541)
T ss_pred C---hHHHHHHHHHHHHHHHHhcccccc
Confidence 2 22333344445 899999999765
No 40
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=98.07 E-value=6.4e-05 Score=57.84 Aligned_cols=97 Identities=9% Similarity=0.088 Sum_probs=66.8
Q ss_pred chHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhhCC
Q psy5072 6 VCPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCS----QAIVALTFSIYALKPFFP 81 (114)
Q Consensus 6 ~~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~----~a~~a~~~~~yl~~~~~p 81 (114)
.+|.+.++...+.+++ +.|++||.|.+.++.+||+.|++.+|..++...|.. .++.++-++ + ++++|
T Consensus 33 lgf~ltgV~lpllgl~------av~~~gG~~~~l~~~~g~~f~~lf~~~~~l~iGP~~aiPRtaa~s~e~~--i-~p~~~ 103 (378)
T TIGR00796 33 LGFLLTGVGLPLLGLI------ALALVGGGYDSLSARIGKVFGILFTVILYLTIGPLFAIPRTATVSFEMG--I-APLLH 103 (378)
T ss_pred HHHHHHHHHHHHHHHh------eeeecCCCHHHHHHHhChHHHHHHHHHHHHHHHhchhhhHHHHHHHHHH--H-HhccC
Confidence 3566777777777776 899999999999999999999999999877666766 666666655 3 45555
Q ss_pred CCCCChhHHHHHHHHHHHH-HHHHHHhhhhhh
Q psy5072 82 TCDPPDESVRLLAVCCIYS-CYRYCSSQTLLI 112 (114)
Q Consensus 82 ~~~~~~~~~~~ia~~~i~~-~~iN~~g~k~~~ 112 (114)
+.. +........++...+ .++|+.+.|+.-
T Consensus 104 ~~~-~~~~l~i~siiff~i~~~l~~~~~k~~~ 134 (378)
T TIGR00796 104 SPT-SLLALFIFSLIFFAVVLLLSLNPSKLID 134 (378)
T ss_pred ccc-chHHHHHHHHHHHHHHHHHHcCcccHHH
Confidence 321 112222333333334 468998888653
No 41
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=97.78 E-value=0.0007 Score=52.42 Aligned_cols=99 Identities=11% Similarity=0.046 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHH----HHHhcccccc-CchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhhhC
Q psy5072 10 HINTHDKVGAYC----YSELGCMISK-SGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIY----ALKPFF 80 (114)
Q Consensus 10 ~~~l~~~~~al~----~aEL~s~~P~-~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~y----l~~~~~ 80 (114)
++++++....+. +.|.-...|. +.+.+.++++.+||..|.+.++.+++..+ ....+++....+. +...+.
T Consensus 38 i~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~ii~~lY~~~~~-~i~~aY~~~~~~~~~~fl~~~~~ 116 (397)
T TIGR00814 38 LMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGILITLLYFFAIY-PILLIYSVAITNDSASFLVNQLG 116 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcC
Confidence 344444444444 4444333344 78899999999999999999999876543 3434444444444 433221
Q ss_pred CCCCCChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072 81 PTCDPPDESVRLLAVCCIYS-CYRYCSSQTLLID 113 (114)
Q Consensus 81 p~~~~~~~~~~~ia~~~i~~-~~iN~~g~k~~~~ 113 (114)
+ +.|+ .......++++ ..++..|.|.+.|
T Consensus 117 ~--~~p~--~~i~~lilv~il~~iv~~G~~~i~r 146 (397)
T TIGR00814 117 T--APPL--RGLLSLALILILVAIMSFGEKLLFK 146 (397)
T ss_pred C--CCcH--HHHHHHHHHHHHHHHHHhcHHHHHH
Confidence 2 1222 22455555566 7999999998876
No 42
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=97.11 E-value=0.016 Score=43.12 Aligned_cols=101 Identities=13% Similarity=0.052 Sum_probs=74.3
Q ss_pred chHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCC
Q psy5072 6 VCPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDP 85 (114)
Q Consensus 6 ~~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~~ 85 (114)
...+++++..+..++.+..+.+++|+.. ...+.++.+||..|.+.+....+ ......+.....+++.+...+.|+ .
T Consensus 36 i~~ll~~~~~l~~~~l~~~l~~~~p~~~-l~~~~~~~~Gk~lg~ii~~~~~l-~~l~~~~~~lr~~~~~i~~~~lp~--T 111 (320)
T PF03845_consen 36 ISVLLGGLIGLLLALLIYYLLKRFPGKT-LVEISEKLFGKWLGKIINLLYIL-YFLLISALVLREFSEFIKTYLLPE--T 111 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHhCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCc--C
Confidence 5678899999999999999999999865 67999999999999988876543 345566666777777766545553 2
Q ss_pred ChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072 86 PDESVRLLAVCCIYS-CYRYCSSQTLLID 113 (114)
Q Consensus 86 ~~~~~~~ia~~~i~~-~~iN~~g~k~~~~ 113 (114)
| ...+....+.. ......|.+.++|
T Consensus 112 P---~~~i~~~~ll~~~y~a~~G~e~i~R 137 (320)
T PF03845_consen 112 P---IWVIILLFLLVAAYAARKGIEVIAR 137 (320)
T ss_pred C---HHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 2 23333444444 6777888888776
No 43
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=96.66 E-value=0.04 Score=42.66 Aligned_cols=69 Identities=3% Similarity=-0.224 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy5072 8 PAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALK 77 (114)
Q Consensus 8 ~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~ 77 (114)
..++..++...++.++|.....|+.-+.-.-.++.+||..+++.+..+.+..+... .++....++-+.+
T Consensus 40 l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g~~~~~~~~~~~~y~ll-~AYisg~g~~~~~ 108 (394)
T PF03222_consen 40 LLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKGGIVIGISYLFLLYALL-VAYISGGGSILSS 108 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHHHHHHHHHHHHHHHHHH-HHHHHccHHHHHH
Confidence 45667778889999999999999988888999999999999999888766554433 3445555555544
No 44
>KOG2083|consensus
Probab=95.69 E-value=0.016 Score=47.08 Aligned_cols=101 Identities=13% Similarity=0.047 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHHhccccc-cCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCCCh
Q psy5072 9 AHINTHDKVGAYCYSELGCMIS-KSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDPPD 87 (114)
Q Consensus 9 ~~~~l~~~~~al~~aEL~s~~P-~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~~~~ 87 (114)
.++..++...+++..-.+++-. ++||.|.-+++..|+..|--.|-++.+ +...+.|.+..+|++-+..++ .++ +.
T Consensus 70 ~~~~~vt~it~lSa~~I~t~~~vk~Gg~yflis~slg~efggsigiIy~f-~~aVa~am~~vgfaEsv~~l~-~~~--s~ 145 (643)
T KOG2083|consen 70 GLTTVVTLITVLSAIAIVTRGQVKSGGVYFLISRSLGPEFGGSIGIIYAF-ANAVATAMYVVGFAESVAHLF-ETE--SK 145 (643)
T ss_pred HHHHHHHHHHHHhHheeeecceeccCcEEEEEEecccccccchhHHHHHH-HHHHHHHHhhhhHHHHHHHHH-Hhc--cH
Confidence 3455667778888888888765 689999999999998888888877655 466778888899999887644 332 34
Q ss_pred hHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072 88 ESVRLLAVCCIYS-CYRYCSSQTLLID 113 (114)
Q Consensus 88 ~~~~~ia~~~i~~-~~iN~~g~k~~~~ 113 (114)
+.++.++.+..++ ..+|..|+||-+|
T Consensus 146 ~~i~gi~~vt~~ill~i~~ag~~w~~k 172 (643)
T KOG2083|consen 146 EMIDGIGSVTVLILLAINVAGVEWEAK 172 (643)
T ss_pred HHhcchhHHHHHHHHHhhhccchhHHH
Confidence 4566677777777 8999999998776
No 45
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=94.91 E-value=0.47 Score=37.03 Aligned_cols=66 Identities=6% Similarity=-0.108 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5072 9 AHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYA 75 (114)
Q Consensus 9 ~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl 75 (114)
.++..++...++.++|.....|+.-+.-.-+++.+||..+++....+.+..++. ..++....++-+
T Consensus 41 i~~w~~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~i~~~~y~fl~y~l-l~AYisg~g~il 106 (403)
T PRK15132 41 IGLWALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQWLTGFSMMFLMYAL-TAAYISGAGELL 106 (403)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHHHHHHHHHHHHHHH-HHHHHhCcHHHH
Confidence 455556778888899998888888888889999999999999888877655543 334444533333
No 46
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=94.33 E-value=0.92 Score=35.39 Aligned_cols=70 Identities=3% Similarity=-0.218 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHHHHHHHhccccccCc-hhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy5072 7 CPAHINTHDKVGAYCYSELGCMISKSG-ADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALK 77 (114)
Q Consensus 7 ~~~~~~l~~~~~al~~aEL~s~~P~~G-G~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~ 77 (114)
+.++++.++....+.+.|.....|+.. +...-+++-+||.++++.+-.+.+..++ ...++....++-+.+
T Consensus 45 ~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~li~~s~~~~~~~-~~~aY~~~~g~~l~~ 115 (415)
T COG0814 45 LLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYLGKKGGILIGLSYFFALYG-LLVAYIVGIGNLLAS 115 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHhCcchHHHHHHHHHHHHHH-HHHHHHhcchhHHHH
Confidence 457788999999999999999999995 8899999999999999999877654443 334455555555544
No 47
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=94.30 E-value=1.8 Score=34.36 Aligned_cols=99 Identities=10% Similarity=0.001 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHhcccc-ccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhC--CCC-C
Q psy5072 9 AHINTHDKVGAYCYSELGCMI-SKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFF--PTC-D 84 (114)
Q Consensus 9 ~~~~l~~~~~al~~aEL~s~~-P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~--p~~-~ 84 (114)
.++..++...++.++|..... |+..+.-.-+++.+|+.++.+.+..+++..++.. .++.....+.+.+.+. -+. +
T Consensus 57 ll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~ilYff~ly~ll-~aY~~~itn~l~sfl~~ql~~~~ 135 (443)
T PRK13629 57 VLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFLYFFAICPLL-WIYGVTITNTFMTFWENQLGFAP 135 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCcCC
Confidence 455666677788999998888 5555566777889999999999988877655543 3344444444433111 011 1
Q ss_pred CChhHHHHHHHHHHHH-HHHHHHhhhhh
Q psy5072 85 PPDESVRLLAVCCIYS-CYRYCSSQTLL 111 (114)
Q Consensus 85 ~~~~~~~~ia~~~i~~-~~iN~~g~k~~ 111 (114)
++ ..+.+.+++.+ ..+-..|.|.+
T Consensus 136 ~~---r~l~slifv~~l~~iv~~G~~~v 160 (443)
T PRK13629 136 LN---RGFVALFLLLLMAFVIWFGKDLM 160 (443)
T ss_pred cc---HHHHHHHHHHHHHHHHHhhHHHH
Confidence 22 23444444444 66666776654
No 48
>PRK10483 tryptophan permease; Provisional
Probab=92.23 E-value=3.6 Score=32.33 Aligned_cols=70 Identities=3% Similarity=-0.240 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy5072 7 CPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALK 77 (114)
Q Consensus 7 ~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~ 77 (114)
...+..+++...++...|....+|+.-+.-.-.++..||.+..+.+..+.+..+.. ..++-...++-+.+
T Consensus 47 ~l~~~W~~M~~taLlllEv~l~~~~g~~~~tma~~~LG~~g~~i~~~s~lfl~Y~L-l~AYisg~g~il~~ 116 (414)
T PRK10483 47 ALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGKGWNVVNGISIAFVLYIL-TYAYISASGSILHH 116 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHHHHHHHHHHHHHHHH-HHHHHhCcHHHHHH
Confidence 34566777889999999999999998888899999999987665555444443433 33333344444444
No 49
>KOG2082|consensus
Probab=91.69 E-value=0.23 Score=41.95 Aligned_cols=103 Identities=14% Similarity=0.071 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHhcccc-ccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCC---
Q psy5072 8 PAHINTHDKVGAYCYSELGCMI-SKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTC--- 83 (114)
Q Consensus 8 ~~~~~l~~~~~al~~aEL~s~~-P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~--- 83 (114)
-++++.+.++.+.+++-+++-= -.+||.|..++|..||-.|--.|-...+ +.....|.+-....+-++..++|..
T Consensus 153 v~iCC~cTmLTaISmSAIATNGVVpaGGsYfmISRsLGPEFGgAVGlcFYL-gtT~AaaMYIlGaVEi~L~Yi~P~aaIf 231 (1075)
T KOG2082|consen 153 VFICCLCTMLTAISMSAIATNGVVPAGGSYFMISRSLGPEFGGAVGLCFYL-GTTVAAAMYILGAVEIFLTYIFPAAAIF 231 (1075)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccCCCeeEEEecccCccccceeeehhhh-hhHHHHHHHHHhHHHHHHHHHccHhhhc
Confidence 3566777778888888877643 4589999999999999988877755333 3333444444444444443334421
Q ss_pred ---C------CChhHHHHHHHHHHHH-HHHHHHhhhhh
Q psy5072 84 ---D------PPDESVRLLAVCCIYS-CYRYCSSQTLL 111 (114)
Q Consensus 84 ---~------~~~~~~~~ia~~~i~~-~~iN~~g~k~~ 111 (114)
+ +.....++-+.+++++ +++-+.|+|..
T Consensus 232 ~~~~a~~~~~am~nnlRvYGT~~Li~m~lIVf~GVK~V 269 (1075)
T KOG2082|consen 232 GAEDAHDEAAAMLNNLRVYGTVFLILMALIVFVGVKFV 269 (1075)
T ss_pred CccccccchhhhhcceehHHHHHHHHHHHHHHHHHHHH
Confidence 0 1112244555555666 67777777754
No 50
>PRK09664 tryptophan permease TnaB; Provisional
Probab=91.11 E-value=6.2 Score=31.07 Aligned_cols=69 Identities=4% Similarity=-0.208 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy5072 8 PAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALK 77 (114)
Q Consensus 8 ~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~ 77 (114)
..+..+++...++.+.|....+|+.-+.-.-.++..||.+-.+.+..+.+..+.. ..++-...++-+.+
T Consensus 46 l~~~w~~M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~g~~i~~~~~~fl~Y~L-l~AYisggG~il~~ 114 (415)
T PRK09664 46 LIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWNIISGITVAFVLYIL-TYAYISANGAIISE 114 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHHHHHHHHHHHHHHHH-HHHHHhccHHHHHH
Confidence 3456677788999999999999998888999999999986655555443433433 33333344444444
No 51
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=88.24 E-value=11 Score=29.91 Aligned_cols=96 Identities=11% Similarity=0.076 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHhccccc---c----CchhHHhHHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCC
Q psy5072 10 HINTHDKVGAYCYSELGCMIS---K----SGADYAYIMTTFG-PFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFP 81 (114)
Q Consensus 10 ~~~l~~~~~al~~aEL~s~~P---~----~GG~y~~~~~~~g-~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p 81 (114)
+++++.+...++-.-|+-.+. + .||+-.|.++..+ |+.|.+.... .+..........+...++-+.+.+
T Consensus 86 I~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi~~gl~~k~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~~~~~~-- 162 (425)
T TIGR00835 86 VTAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYIKKGLGMRWLAVLFAVF-LIASFGIGNMVQANAIASALSNAF-- 162 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHHHHHhCccHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHc--
Confidence 344555554444444555554 2 2455588888765 6666665544 222223345556666666554322
Q ss_pred CCCCChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072 82 TCDPPDESVRLLAVCCIYS-CYRYCSSQTLLID 113 (114)
Q Consensus 82 ~~~~~~~~~~~ia~~~i~~-~~iN~~g~k~~~~ 113 (114)
+.|+ ...++.+.++ ..+-.-|.|.++|
T Consensus 163 --~~~~---~v~~i~l~~l~~~vi~GGik~Ia~ 190 (425)
T TIGR00835 163 --NVPK---LVTGIVLTVLTALIIFGGLKRIAK 190 (425)
T ss_pred --CCcH---HHHHHHHHHHHHHHHhcCchHHHH
Confidence 2232 2334444444 3343337776654
No 52
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=88.02 E-value=9.4 Score=30.11 Aligned_cols=38 Identities=16% Similarity=0.115 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHhcccccc-------CchhHHhHHHHhchHH
Q psy5072 10 HINTHDKVGAYCYSELGCMISK-------SGADYAYIMTTFGPFL 47 (114)
Q Consensus 10 ~~~l~~~~~al~~aEL~s~~P~-------~GG~y~~~~~~~g~~~ 47 (114)
+.+++.+...++=.-|+-.|.+ .||+..|.++.+|.++
T Consensus 58 i~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~yyi~~gl~~k~ 102 (416)
T PF01235_consen 58 ISALLGMATKYAEVTLAQKYREKDEDGEYRGGPMYYIEKGLGSKW 102 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHheEECCCCCEeecHHHHHHHHhccch
Confidence 4455555555555556666542 4899999999988764
No 53
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=82.36 E-value=24 Score=28.26 Aligned_cols=97 Identities=9% Similarity=0.032 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHhcccccc-------CchhHHhHHHHhchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCC
Q psy5072 10 HINTHDKVGAYCYSELGCMISK-------SGADYAYIMTTFGPFL-AFIRLWIECMIVRPCSQAIVALTFSIYALKPFFP 81 (114)
Q Consensus 10 ~~~l~~~~~al~~aEL~s~~P~-------~GG~y~~~~~~~g~~~-gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p 81 (114)
+.+++.+...++=+-|+..|.+ .||+-+|.++..|.++ +-+.............+...+.+.++-+...+
T Consensus 102 i~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~yYi~kGl~~r~l~v~FA~~li~afg~i~n~vQ~NsIa~a~~~af-- 179 (452)
T COG1115 102 IVALFGMATKFAESTLAQKYRVKDKDGEYRGGPAYYIEKGLGMRWLAVLFAFALIAAFGFIGNGVQSNSIASALANAF-- 179 (452)
T ss_pred HHHHHHHHHHHHHHHHHhheeEeCCCCCCcCChHHHHHhhcCCcHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHhc--
Confidence 3455555555555556766651 4799999999988553 44444222121122355666666666665432
Q ss_pred CCCCChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072 82 TCDPPDESVRLLAVCCIYS-CYRYCSSQTLLID 113 (114)
Q Consensus 82 ~~~~~~~~~~~ia~~~i~~-~~iN~~g~k~~~~ 113 (114)
+.| ....++++.++ .++=.-|+|.++|
T Consensus 180 --~~~---~~~~gi~la~l~~~VI~GGi~rIa~ 207 (452)
T COG1115 180 --GIP---PLVTGIVLALLVALVIFGGIKRIAK 207 (452)
T ss_pred --CCc---HHHHHHHHHHHHHHHHHcchHHHHH
Confidence 122 23445555555 5666677776654
No 54
>KOG1288|consensus
Probab=78.86 E-value=3 Score=35.22 Aligned_cols=104 Identities=12% Similarity=-0.037 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHhcccc-ccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCC-----
Q psy5072 9 AHINTHDKVGAYCYSELGCMI-SKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPT----- 82 (114)
Q Consensus 9 ~~~~l~~~~~al~~aEL~s~~-P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~----- 82 (114)
+++-.+-++..++.+-+++-= -+-||.|..++|..||-.|--.|-+.+ .+.....|.....+.+-+..-+.++
T Consensus 107 liaY~I~llTvlSicAIsTNGaV~GGGaYymISRsLGpEfGGSIGllFf-~anV~~~am~isG~vE~il~nfG~~a~g~s 185 (945)
T KOG1288|consen 107 LIAYAILLLTVLSICAISTNGAVRGGGAYYMISRSLGPEFGGSIGLLFF-VANVFNCAMNISGFVEPILDNFGKEAQGAS 185 (945)
T ss_pred HHHHHHHHHHHHHHhhhccCCceecCceEEEEEcccCcccCCeeeehhh-HHHHhcchhhhhhhhHHHHHhcCccccCCc
Confidence 444445555566666665543 457899999999999988877775543 3567777777777777766534321
Q ss_pred ---CCC-ChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072 83 ---CDP-PDESVRLLAVCCIYS-CYRYCSSQTLLID 113 (114)
Q Consensus 83 ---~~~-~~~~~~~ia~~~i~~-~~iN~~g~k~~~~ 113 (114)
.-| ..|+..+-+..++.+ ..+.+.|..+.||
T Consensus 186 g~~~lP~g~ww~fly~t~vl~l~~~vc~lGsalfAk 221 (945)
T KOG1288|consen 186 GSQFLPDGYWWRFLYTTLVLALCLIVCLLGSALFAK 221 (945)
T ss_pred ccccCCCCcchhhHHHHHHHHHHHHHHHhhHHHHHh
Confidence 112 245555555555566 6888888888877
No 55
>PF11118 DUF2627: Protein of unknown function (DUF2627); InterPro: IPR020138 This entry represents uncharacterised membrane proteins with no known function.
Probab=43.24 E-value=41 Score=20.25 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=18.8
Q ss_pred HHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072 91 RLLAVCCIYS-CYRYCSSQTLLID 113 (114)
Q Consensus 91 ~~ia~~~i~~-~~iN~~g~k~~~~ 113 (114)
+.+++.++++ ..+-.+|.|++-|
T Consensus 3 R~iAlliLvIPg~~a~yGiklMRD 26 (77)
T PF11118_consen 3 RFIALLILVIPGILAAYGIKLMRD 26 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888 8899999988755
No 56
>PF13317 DUF4088: Protein of unknown function (DUF4088)
Probab=35.61 E-value=21 Score=25.51 Aligned_cols=16 Identities=25% Similarity=0.457 Sum_probs=13.5
Q ss_pred cCchhHHhHHHHhchH
Q psy5072 31 KSGADYAYIMTTFGPF 46 (114)
Q Consensus 31 ~~GG~y~~~~~~~g~~ 46 (114)
-+||+|.|.++.+.|-
T Consensus 49 l~~GqYaWAkr~~DK~ 64 (229)
T PF13317_consen 49 LQGGQYAWAKRVFDKQ 64 (229)
T ss_pred HhcchhHHHHHHhhhh
Confidence 4799999999988764
No 57
>KOG4812|consensus
Probab=30.67 E-value=2.2e+02 Score=21.04 Aligned_cols=17 Identities=6% Similarity=0.100 Sum_probs=12.8
Q ss_pred HHH-HHHHHHhhhhhhcC
Q psy5072 98 IYS-CYRYCSSQTLLIDK 114 (114)
Q Consensus 98 i~~-~~iN~~g~k~~~~~ 114 (114)
+.+ .++|+..+|-+-||
T Consensus 236 l~lr~~i~YikVrrm~~~ 253 (262)
T KOG4812|consen 236 LFLRGFINYIKVRRMEEK 253 (262)
T ss_pred HHHHHHHhHHHHhhHHHH
Confidence 445 79999999987653
No 58
>PF12051 DUF3533: Protein of unknown function (DUF3533); InterPro: IPR022703 This transmembrane domain is functionally uncharacterised. It is found in bacterial and eukaryotic proteins.
Probab=20.38 E-value=4e+02 Score=20.41 Aligned_cols=43 Identities=14% Similarity=0.111 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHH
Q psy5072 9 AHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMI 58 (114)
Q Consensus 9 ~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~ 58 (114)
+...+..++.+++|.-++.++-.+- .+.||+ .||+.-|+..++
T Consensus 250 ~~~~~~~~~~Sl~~~~v~~af~~~~------~~~~g~-~gf~v~Wm~~~l 292 (382)
T PF12051_consen 250 IISWIAYFFLSLFYSLVSLAFQVDF------TVAFGK-GGFVVYWMFSWL 292 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCc------cccCCC-CcHHHHHHHHHH
Confidence 3445555666677766666554443 456677 688888886443
No 59
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=20.05 E-value=3.1e+02 Score=18.96 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhCCCC
Q psy5072 60 RPCSQAIVALTFSIYALKPFFPTC 83 (114)
Q Consensus 60 ~~~~~a~~a~~~~~yl~~~~~p~~ 83 (114)
..+..++.+.++++-+.+ +||+.
T Consensus 22 ~v~~lai~sl~~s~llI~-lFg~~ 44 (165)
T PF11286_consen 22 CVASLAILSLAFSQLLIA-LFGGE 44 (165)
T ss_pred HHHHHHHHHHHHHHHHHH-HcCCC
Confidence 345667778889988876 56643
Done!