Query psy5072
Match_columns 114
No_of_seqs 180 out of 1101
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 16:32:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5072.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5072hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.6 3.7E-15 1.3E-19 112.7 11.6 105 6-113 44-149 (445)
2 4djk_A Probable glutamate/gamm 99.6 1.8E-14 6.1E-19 110.7 10.3 102 10-113 48-154 (511)
3 3gia_A Uncharacterized protein 99.5 1.3E-13 4.6E-18 104.2 13.4 105 6-113 43-149 (444)
4 2jln_A MHP1; hydantoin, transp 52.7 74 0.0025 24.2 8.2 41 15-55 69-110 (501)
5 3dh4_A Sodium/glucose cotransp 13.7 4.3E+02 0.015 20.0 8.0 23 32-54 82-104 (530)
6 4b6x_A AVRRPS4, avirulence pro 12.3 46 0.0016 19.4 0.0 8 3-10 15-22 (90)
7 2glz_A Similar to formylmethan 10.3 2.6E+02 0.0088 17.6 3.2 36 3-39 16-51 (153)
8 2ww9_C Protein transport prote 8.4 2.7E+02 0.0094 16.2 2.4 22 86-107 60-82 (87)
9 1pi7_A VPU protein, U ORF prot 7.7 2.6E+02 0.0088 13.5 2.4 6 1-6 1-6 (36)
10 1xc0_A Pardaxin P-4, PA4; BEND 7.5 1.4E+02 0.0049 13.7 0.7 13 23-35 20-32 (33)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.62 E-value=3.7e-15 Score=112.65 Aligned_cols=105 Identities=14% Similarity=0.163 Sum_probs=89.0
Q ss_pred chHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCCC
Q psy5072 6 VCPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCDP 85 (114)
Q Consensus 6 ~~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~~ 85 (114)
...++++++.++.+++|+|+++++|++||.|.|.++.+||..||+.+|.+++. +....++.+..+++|+.. ++|+..
T Consensus 44 ~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~~g~~~g~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~- 120 (445)
T 3l1l_A 44 YGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPFLGYQTNVLYWLA-CWIGNIAMVVIGVGYLSY-FFPILK- 120 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHSCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTTT-TCGGGG-
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHcCChHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HCcccc-
Confidence 35678999999999999999999999999999999999999999999998764 566777888999999875 556432
Q ss_pred ChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072 86 PDESVRLLAVCCIYS-CYRYCSSQTLLID 113 (114)
Q Consensus 86 ~~~~~~~ia~~~i~~-~~iN~~g~k~~~~ 113 (114)
+++...+++++++++ +.+|++|+|..+|
T Consensus 121 ~~~~~~~~~~~~~~~~~~in~~g~~~~~~ 149 (445)
T 3l1l_A 121 DPWVLTITCVVVLWIFVLLNIVGPKMITR 149 (445)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 346677788888888 9999999998765
No 2
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=99.56 E-value=1.8e-14 Score=110.69 Aligned_cols=102 Identities=10% Similarity=0.070 Sum_probs=78.7
Q ss_pred HHHHHH-HHHHHHHHHhcc--ccccCchhHHhHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-CCCCCC
Q psy5072 10 HINTHD-KVGAYCYSELGC--MISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKPF-FPTCDP 85 (114)
Q Consensus 10 ~~~l~~-~~~al~~aEL~s--~~P~~GG~y~~~~~~~g~~~gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~-~p~~~~ 85 (114)
+++++. ++.+++|+|+++ ++| +||.|.|+++.+||.+||+.+|.+++. +....++.....++++...+ .|+.++
T Consensus 48 i~~~~~~l~~al~~ael~s~~~~P-~GG~y~~~~~~~g~~~g~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~ 125 (511)
T 4djk_A 48 LGGILWFIPVGLCAAEMATVDGWE-EGGVFAWVSNTLGPRWGFAAISFGYLQ-IAIGFIPMLYFVLGALSYILKWPALNE 125 (511)
T ss_dssp HHHHHTHHHHHHHHHHHHTTSCC----CHHHHHHHHHCHHHHHHHHHHHHHH-HHHHTHHHHHHHHHHHHTTTTCGGGTS
T ss_pred HHHHHHHHHHHHHHHHHcccccCC-CCChhhhHHhhcCchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 344444 458999999999 999 999999999999999999999998764 55666677777777775432 455555
Q ss_pred ChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072 86 PDESVRLLAVCCIYS-CYRYCSSQTLLID 113 (114)
Q Consensus 86 ~~~~~~~ia~~~i~~-~~iN~~g~k~~~~ 113 (114)
+++...+++++++++ +.+|++|+|...|
T Consensus 126 ~~~~~~~~~~~~~~~~~~in~~g~~~~~~ 154 (511)
T 4djk_A 126 DPITKTIAALIILWALALTQFGGTKYTAR 154 (511)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTCSSSHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhChHHHHH
Confidence 667788888888888 9999999998764
No 3
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.54 E-value=1.3e-13 Score=104.17 Aligned_cols=105 Identities=15% Similarity=0.065 Sum_probs=86.3
Q ss_pred chHHHHHHHHHHHHHHHHHhccccccCchhHHhHHHHhchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCCC
Q psy5072 6 VCPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTTFGPFL-AFIRLWIECMIVRPCSQAIVALTFSIYALKPFFPTCD 84 (114)
Q Consensus 6 ~~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~~~~~g~~~-gfl~gw~~~~~~~~~~~a~~a~~~~~yl~~~~~p~~~ 84 (114)
..+++++++.++.+++|+|+++++|++||.|.|+++.+||.+ +...+|.+++ .+....+..+.++++|+.. ++|..
T Consensus 43 ~~~li~~~~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~G~~~~~g~~~~~~~~-~~~~~~a~~~~~~~~~~~~-~~~~~- 119 (444)
T 3gia_A 43 ETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAIGDNIITGALSILLWM-SYVISIALFAKGFAGYFLP-LINAP- 119 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCTTTHHHHHHHHHCSSHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHhHHHHhCcchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HhCCC-
Confidence 357889999999999999999999999999999999999963 4445788765 4677888999999999976 45542
Q ss_pred CChhHHHHHHHHHHHH-HHHHHHhhhhhhc
Q psy5072 85 PPDESVRLLAVCCIYS-CYRYCSSQTLLID 113 (114)
Q Consensus 85 ~~~~~~~~ia~~~i~~-~~iN~~g~k~~~~ 113 (114)
++++....++.+++++ +.+|++|+|..+|
T Consensus 120 ~~~~~~~~~~~~~~~~~~~in~~g~~~~~~ 149 (444)
T 3gia_A 120 INTFNIAITEIGIVAFFTALNFFGSKAVGR 149 (444)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3456667788888888 9999999998765
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=52.66 E-value=74 Score=24.20 Aligned_cols=41 Identities=10% Similarity=0.059 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhccccccCchhHH-hHHHHhchHHHHHHHHHH
Q psy5072 15 DKVGAYCYSELGCMISKSGADYA-YIMTTFGPFLAFIRLWIE 55 (114)
Q Consensus 15 ~~~~al~~aEL~s~~P~~GG~y~-~~~~~~g~~~gfl~gw~~ 55 (114)
.++..+..+-++..=|+.|-.+. ..|..||++.+.+.....
T Consensus 69 ~li~~~~~~l~~~~G~~~Gl~~~v~~R~~FG~~Gs~i~~ll~ 110 (501)
T 2jln_A 69 CTIAVILLFFTQSAAIRWGINFTVAARMPFGIRGSLIPITLK 110 (501)
T ss_dssp HHHHHHHHHHHTHHHHHHCCCHHHHTTTTSCTTTTHHHHHHH
T ss_pred HHHHHHHHHHHhHHHhhcCCChhhhhHhhcchhHHHHHHHHH
Confidence 34445556666666677777776 667789988776655554
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=13.72 E-value=4.3e+02 Score=20.03 Aligned_cols=23 Identities=13% Similarity=-0.028 Sum_probs=16.9
Q ss_pred CchhHHhHHHHhchHHHHHHHHH
Q psy5072 32 SGADYAYIMTTFGPFLAFIRLWI 54 (114)
Q Consensus 32 ~GG~y~~~~~~~g~~~gfl~gw~ 54 (114)
.--.+.|.++.||+....+....
T Consensus 82 ~~T~~e~l~~Rfg~~~~~~~a~~ 104 (530)
T 3dh4_A 82 IYTIPEFVEKRFNKKLKTILAVF 104 (530)
T ss_dssp CCSHHHHHHHHTCHHHHHHHHHH
T ss_pred CccHHHHHHHHcCcHHHHHHHHH
Confidence 34578899999999876665544
No 6
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=12.31 E-value=46 Score=19.45 Aligned_cols=8 Identities=50% Similarity=1.061 Sum_probs=0.4
Q ss_pred cccchHHH
Q psy5072 3 HVHVCPAH 10 (114)
Q Consensus 3 ~~~~~~~~ 10 (114)
.|||||+.
T Consensus 15 Dv~V~P~G 22 (90)
T 4b6x_A 15 DVQVCPRG 22 (90)
T ss_dssp -------C
T ss_pred ceeecccc
Confidence 36777654
No 7
>2glz_A Similar to formylmethanofuran dehydrogenase subun; structural genomics, joint center for structural genomics; HET: MSE; 1.45A {Desulfitobacterium hafniense} SCOP: d.81.3.1
Probab=10.31 E-value=2.6e+02 Score=17.59 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=23.1
Q ss_pred cccchHHHHHHHHHHHHHHHHHhccccccCchhHHhH
Q psy5072 3 HVHVCPAHINTHDKVGAYCYSELGCMISKSGADYAYI 39 (114)
Q Consensus 3 ~~~~~~~~~~l~~~~~al~~aEL~s~~P~~GG~y~~~ 39 (114)
|=|.||-++ +-....-...-+|+...|..+-.+..+
T Consensus 16 HGH~CPgla-iG~rm~~~Al~~L~~~~~~~~~i~vi~ 51 (153)
T 2glz_A 16 HGHTCPDIA-LGYRIAQLAQREMGIRPAPDSECLVKA 51 (153)
T ss_dssp HCSCCHHHH-HHHHHHHHHHHHHCSCCSTTCCEEEEE
T ss_pred cCCCCchHH-HHHHHHHHHHHHcCCCCCCCCCEEEEE
Confidence 889999855 334445566778876667655555433
No 8
>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C
Probab=8.38 E-value=2.7e+02 Score=16.25 Aligned_cols=22 Identities=23% Similarity=0.099 Sum_probs=11.3
Q ss_pred ChhHHHHHHHHHHHH-HHHHHHh
Q psy5072 86 PDESVRLLAVCCIYS-CYRYCSS 107 (114)
Q Consensus 86 ~~~~~~~ia~~~i~~-~~iN~~g 107 (114)
++..+..+.++++.+ .++|++|
T Consensus 60 ~P~~VLv~sl~FIa~VilLHI~g 82 (87)
T 2ww9_C 60 DSLVVLFLSVGFIFSVIALHLLT 82 (87)
T ss_dssp CHHHHHHHHHHHHHHHHHC----
T ss_pred cCeeehhhHHHHHHHHHHHHHhh
Confidence 344556666666666 7888877
No 9
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=7.67 E-value=2.6e+02 Score=13.47 Aligned_cols=6 Identities=33% Similarity=0.739 Sum_probs=3.4
Q ss_pred CCcccc
Q psy5072 1 MQHVHV 6 (114)
Q Consensus 1 ~~~~~~ 6 (114)
|||.+.
T Consensus 1 M~~l~i 6 (36)
T 1pi7_A 1 MQPIQI 6 (36)
T ss_pred Cchhhh
Confidence 566554
No 10
>1xc0_A Pardaxin P-4, PA4; BEND-helix-BEND-helix motif, signaling protein; NMR {Synthetic} SCOP: j.6.1.1 PDB: 2kns_A
Probab=7.47 E-value=1.4e+02 Score=13.72 Aligned_cols=13 Identities=38% Similarity=0.649 Sum_probs=8.5
Q ss_pred HHhccccccCchh
Q psy5072 23 SELGCMISKSGAD 35 (114)
Q Consensus 23 aEL~s~~P~~GG~ 35 (114)
...+|+...+||+
T Consensus 20 savgsalsssggq 32 (33)
T 1xc0_A 20 SAVGSALSSSGGQ 32 (33)
T ss_dssp HHHHHHTTTTTTC
T ss_pred HHHHHHhhcccCC
Confidence 3456677777774
Done!