Query psy5072
Match_columns 114
No_of_seqs 180 out of 1101
Neff 8.1
Searched_HMMs 13730
Date Fri Aug 16 16:32:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5072.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5072hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3dtua1 f.24.1.1 (A:14-551) Ba 10.3 2E+02 0.015 20.6 4.9 23 33-55 421-447 (538)
2 d1ov9a_ a.155.1.1 (A:) H-NS-li 10.1 32 0.0024 16.4 0.2 13 101-113 5-17 (45)
3 d2e1ba1 b.43.3.6 (A:1-87) AlaX 9.2 39 0.0028 18.1 0.4 9 27-35 36-44 (87)
4 d1h2sb_ f.17.4.1 (B:) Sensory 7.9 1.4E+02 0.01 14.3 2.7 20 9-28 6-25 (60)
5 d2gvia1 d.81.3.1 (A:1-168) Unc 7.3 50 0.0036 20.0 0.3 25 3-28 16-40 (168)
6 d1xmea1 f.24.1.1 (A:14-562) Ba 6.4 4.1E+02 0.03 18.8 5.2 14 33-46 386-399 (549)
7 d2glza1 d.81.3.1 (A:3-151) Fwd 4.4 1.1E+02 0.0077 18.2 0.5 24 3-27 13-36 (149)
8 d2axtj1 f.23.32.1 (J:7-40) Pho 4.0 1.6E+02 0.012 12.8 0.9 15 13-27 18-32 (34)
9 d1o5ha_ a.191.1.1 (A:) Hypothe 3.6 1.5E+02 0.011 18.2 0.7 13 22-34 11-23 (200)
10 d1jb0f_ f.23.16.1 (F:) Subunit 3.4 2.6E+02 0.019 16.3 1.7 9 49-57 72-80 (141)
No 1
>d3dtua1 f.24.1.1 (A:14-551) Bacterial aa3 type cytochrome c oxidase subunit I {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=10.29 E-value=2e+02 Score=20.61 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=15.4
Q ss_pred chhHHhHHHHhch----HHHHHHHHHH
Q psy5072 33 GADYAYIMTTFGP----FLAFIRLWIE 55 (114)
Q Consensus 33 GG~y~~~~~~~g~----~~gfl~gw~~ 55 (114)
||.|.|..+..|+ +.+.+--|..
T Consensus 421 a~~y~w~Pk~tGr~~~~~l~~~hfwl~ 447 (538)
T d3dtua1 421 AGIYFWIGKMSGRQYPEWAGKLHFWMM 447 (538)
T ss_dssp HHHHHHHHHHHSBCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 5677888876665 5666666654
No 2
>d1ov9a_ a.155.1.1 (A:) H-NS-like protein VicH {Vibrio cholerae [TaxId: 666]}
Probab=10.08 E-value=32 Score=16.38 Aligned_cols=13 Identities=8% Similarity=-0.184 Sum_probs=10.7
Q ss_pred HHHHHHhhhhhhc
Q psy5072 101 CYRYCSSQTLLID 113 (114)
Q Consensus 101 ~~iN~~g~k~~~~ 113 (114)
++.|+.+.|..+|
T Consensus 5 ~llNiRSLRA~~R 17 (45)
T d1ov9a_ 5 TLLNIRSLRAYAR 17 (45)
T ss_dssp HHTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 6789999888776
No 3
>d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=9.18 E-value=39 Score=18.05 Aligned_cols=9 Identities=11% Similarity=0.324 Sum_probs=6.1
Q ss_pred cccccCchh
Q psy5072 27 CMISKSGAD 35 (114)
Q Consensus 27 s~~P~~GG~ 35 (114)
..||++||+
T Consensus 36 ~FYpegGGQ 44 (87)
T d2e1ba1 36 IFYPTGGGQ 44 (87)
T ss_dssp CSCCCCTTC
T ss_pred ccccCCCCC
Confidence 357777776
No 4
>d1h2sb_ f.17.4.1 (B:) Sensory rhodopsin II transducer, Htr2 {Natronomonas pharaonis [TaxId: 2257]}
Probab=7.87 E-value=1.4e+02 Score=14.30 Aligned_cols=20 Identities=20% Similarity=0.094 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHhccc
Q psy5072 9 AHINTHDKVGAYCYSELGCM 28 (114)
Q Consensus 9 ~~~~l~~~~~al~~aEL~s~ 28 (114)
.++++-.++.+..|.|...+
T Consensus 6 fvgaltvlfgaiaygevtaa 25 (60)
T d1h2sb_ 6 FVGALTVLFGAIAYGEVTAA 25 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred EEcHHHHHHhhhhhceehHh
Confidence 45667778899999998554
No 5
>d2gvia1 d.81.3.1 (A:1-168) Uncharacterized protein Ta1109 {Thermoplasma acidophilum [TaxId: 2303]}
Probab=7.33 E-value=50 Score=19.98 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=15.8
Q ss_pred cccchHHHHHHHHHHHHHHHHHhccc
Q psy5072 3 HVHVCPAHINTHDKVGAYCYSELGCM 28 (114)
Q Consensus 3 ~~~~~~~~~~l~~~~~al~~aEL~s~ 28 (114)
|=|.||-++.-.- ..-..+-+|+..
T Consensus 16 HGH~CPgla~G~r-m~~~Al~~L~~~ 40 (168)
T d2gvia1 16 HGHKCPYMPMGYR-AGSYALKIAGLE 40 (168)
T ss_dssp HCSCCSHHHHHHH-HHHHHHHHHTCC
T ss_pred cCCCCchHHHHHH-HHHHHHHHcCCC
Confidence 8899997664433 334556677654
No 6
>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase subunit I {Thermus thermophilus [TaxId: 274]}
Probab=6.44 E-value=4.1e+02 Score=18.76 Aligned_cols=14 Identities=21% Similarity=0.180 Sum_probs=10.1
Q ss_pred chhHHhHHHHhchH
Q psy5072 33 GADYAYIMTTFGPF 46 (114)
Q Consensus 33 GG~y~~~~~~~g~~ 46 (114)
|+.|.+..+.+|+.
T Consensus 386 g~~y~~~P~ltGr~ 399 (549)
T d1xmea1 386 GSLYWLLPNLTGKP 399 (549)
T ss_dssp HTHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhCcc
Confidence 56778887777763
No 7
>d2glza1 d.81.3.1 (A:3-151) FwdE-like protein DSY1837 (Dhaf_2201) {Desulfitobacterium hafniense [TaxId: 49338]}
Probab=4.38 E-value=1.1e+02 Score=18.19 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=13.7
Q ss_pred cccchHHHHHHHHHHHHHHHHHhcc
Q psy5072 3 HVHVCPAHINTHDKVGAYCYSELGC 27 (114)
Q Consensus 3 ~~~~~~~~~~l~~~~~al~~aEL~s 27 (114)
|-|.||-++.-. -..-+..-+|+.
T Consensus 13 HGH~CpGl~iG~-r~~~~a~~~l~~ 36 (149)
T d2glza1 13 HGHTCPDIALGY-RIAQLAQREMGI 36 (149)
T ss_dssp HCSCCHHHHHHH-HHHHHHHHHHCS
T ss_pred cCCCCCcHHHHH-HHHHHHHHHcCC
Confidence 889998654333 333444555543
No 8
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.99 E-value=1.6e+02 Score=12.80 Aligned_cols=15 Identities=20% Similarity=0.078 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHhcc
Q psy5072 13 THDKVGAYCYSELGC 27 (114)
Q Consensus 13 l~~~~~al~~aEL~s 27 (114)
++.++.--+|+.++|
T Consensus 18 ~vG~FfYGsYsGlGS 32 (34)
T d2axtj1 18 IVGLFFYGAYAGLGS 32 (34)
T ss_dssp HHHHHHHHTTTSTTS
T ss_pred heeeeeeeeeccccc
Confidence 333344444444444
No 9
>d1o5ha_ a.191.1.1 (A:) Hypothetical protein TM1560 {Thermotoga maritima [TaxId: 2336]}
Probab=3.63 E-value=1.5e+02 Score=18.22 Aligned_cols=13 Identities=8% Similarity=0.041 Sum_probs=9.8
Q ss_pred HHHhccccccCch
Q psy5072 22 YSELGCMISKSGA 34 (114)
Q Consensus 22 ~aEL~s~~P~~GG 34 (114)
.-+++|.-|..||
T Consensus 11 l~~las~~ptPGG 23 (200)
T d1o5ha_ 11 CDMVAERKPTPGG 23 (200)
T ss_dssp HHHHHSSSSSSCH
T ss_pred HHHHcCCCCCCCc
Confidence 3467888888877
No 10
>d1jb0f_ f.23.16.1 (F:) Subunit III of photosystem I reaction centre, PsaF {Synechococcus elongatus [TaxId: 32046]}
Probab=3.38 E-value=2.6e+02 Score=16.28 Aligned_cols=9 Identities=33% Similarity=0.818 Sum_probs=5.3
Q ss_pred HHHHHHHHH
Q psy5072 49 FIRLWIECM 57 (114)
Q Consensus 49 fl~gw~~~~ 57 (114)
|++||+.|.
T Consensus 72 YIAGwIGWa 80 (141)
T d1jb0f_ 72 YIAGWIGWV 80 (141)
T ss_dssp HHHHHHHHH
T ss_pred HHhhhhhhh
Confidence 456776543
Done!