RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5072
(114 letters)
>gnl|CDD|233179 TIGR00911, 2A0308, L-type amino acid transporter. [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 501
Score = 118 bits (297), Expect = 1e-32
Identities = 46/82 (56%), Positives = 61/82 (74%)
Query: 17 VGAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYAL 76
VGA Y+ELG I KSG +Y YI+ FGP LAF+RLWIE +++RP SQA+ AL F+IY L
Sbjct: 92 VGALVYAELGTTIPKSGGEYNYILEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYIL 151
Query: 77 KPFFPTCDPPDESVRLLAVCCI 98
P FP C+ P+ ++RL+AV C+
Sbjct: 152 TPVFPDCEVPEWAIRLVAVLCV 173
>gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter. [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 429
Score = 42.8 bits (101), Expect = 7e-06
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 19 AYCYSELGCMISKSGADYAYIMTTFGPFLAFI---RLWIECMIVRPCSQAIVALTFSIY 74
A Y+EL M+ +G+ Y Y G AFI LW+E + + A VA+ + Y
Sbjct: 53 ALVYAELAAMLPVAGSPYTYAYEAMGELTAFIIGWSLWLEYGV----AVAAVAVGWGGY 107
>gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease.
Length = 425
Score = 40.8 bits (96), Expect = 4e-05
Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
Query: 18 GAYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALK 77
A Y+EL ++G Y ++ FG +AFI W + + ++ Y L
Sbjct: 47 VALVYAELSSAFPRNGGIYVWLKNAFGKPVAFIAAWFNWLAYILGLASSSSVAAQ-YLLS 105
Query: 78 PFFPTCDPPDESVRLLAVCCI 98
FFP +A+ +
Sbjct: 106 AFFPDLVGNTWLTYGIAIAIL 126
>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and
metabolism].
Length = 466
Score = 40.5 bits (95), Expect = 5e-05
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 19 AYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWI 54
A Y+EL I +G YAY GP L F+ W+
Sbjct: 62 ALSYAELSSAIPSAGGAYAYAKRALGPRLGFLAGWL 97
>gnl|CDD|183096 PRK11357, frlA, putative fructoselysine transporter; Provisional.
Length = 445
Score = 38.3 bits (89), Expect = 3e-04
Identities = 16/54 (29%), Positives = 23/54 (42%)
Query: 21 CYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIY 74
Y+EL ++GADY Y+ LAF+ W S +I+AL
Sbjct: 62 VYAELSTAYPENGADYVYLKNAGSRPLAFLSGWASFWANDAPSLSIMALAIVSN 115
>gnl|CDD|129984 TIGR00906, 2A0303, cationic amino acid transport permease.
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 557
Score = 37.1 bits (86), Expect = 7e-04
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 19 AYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLW 53
+CY+E G + K+G+ Y Y T G AFI W
Sbjct: 79 GFCYAEFGARVPKAGSAYLYSYVTVGELWAFITGW 113
>gnl|CDD|182613 PRK10644, PRK10644, arginine:agmatin antiporter; Provisional.
Length = 445
Score = 30.9 bits (70), Expect = 0.10
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
Query: 19 AYCYSELGCMISKSGADYAYIMTTFGPFLAF---IRLWIECMIVRPCSQAIVALTFSIYA 75
+ Y+++ + G YAY FGPFL + + W+ C I + ++ + + Y
Sbjct: 57 SMVYAKMSSLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGN-IAMVVIGVGYLSY- 114
Query: 76 LKPFFPTCDPP 86
FFP P
Sbjct: 115 ---FFPILKDP 122
>gnl|CDD|165129 PHA02764, PHA02764, hypothetical protein; Provisional.
Length = 399
Score = 29.9 bits (67), Expect = 0.24
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 22 YSELGCMISKSGADYAYIMTTFGP--FLAF-IRLWIECMIVRPCSQAIVALTFSI 73
Y +L +G DYAYI T F + F I LW+ ++ +P +V L F+I
Sbjct: 66 YYKLTTKFPLNGGDYAYIRTAFSSKFYTIFGISLWLTYVLSQPILGDLVLLNFNI 120
>gnl|CDD|129986 TIGR00908, 2A0305, ethanolamine permease. The three genes used as
the seed for this model (from Burkholderia pseudomallei,
Pseudomonas aeruginosa and Clostridium acetobutylicum
are all adjacent to genes for the catabolism of
ethanolamine. Most if not all of the hits to this model
have a similar arrangement of genes. This group is a
member of the Amino Acid-Polyamine-Organocation (APC)
Superfamily [Transport and binding proteins, Amino
acids, peptides and amines].
Length = 442
Score = 29.8 bits (67), Expect = 0.27
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 20 YCYSELGCMISKSGADYAYIMTTFGP---FLAFIRLWIECMIVRP 61
+ +EL MI +G Y + FGP FLA + IE P
Sbjct: 58 FSLAELSTMIPTAGGGYGFARRAFGPWGGFLAGTAILIEFAFAPP 102
>gnl|CDD|130302 TIGR01235, pyruv_carbox, pyruvate carboxylase. This enzyme plays a
role in gluconeogensis but not glycolysis [Energy
metabolism, Glycolysis/gluconeogenesis].
Length = 1143
Score = 29.0 bits (65), Expect = 0.57
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 8 PAHINTHDKVGAYCYSELGCMISKSGAD 35
P H +THD G S L ++G D
Sbjct: 734 PIHFHTHDTSGIAVASMLAA--VEAGVD 759
>gnl|CDD|215858 pfam00324, AA_permease, Amino acid permease.
Length = 473
Score = 27.7 bits (62), Expect = 1.3
Identities = 9/31 (29%), Positives = 11/31 (35%)
Query: 19 AYCYSELGCMISKSGADYAYIMTTFGPFLAF 49
E+ +G YAY GP L F
Sbjct: 46 MLSLGEMSTNGPVAGGFYAYASRFLGPSLGF 76
>gnl|CDD|220973 pfam11084, DUF2621, Protein of unknown function (DUF2621). This
family is conserved in the Bacillaceae family. Several
members are named as YneK. The function is not known.
Length = 141
Score = 25.8 bits (57), Expect = 4.9
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 44 GPFLAFIRLWIECMIV 59
G FL FI LW+ +I
Sbjct: 4 GWFLWFILLWVVILIS 19
>gnl|CDD|216348 pfam01180, DHO_dh, Dihydroorotate dehydrogenase.
Length = 290
Score = 25.8 bits (57), Expect = 6.3
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 24 ELGCMISKSG---ADYAYIMTTFGPFLAFIRLWIEC 56
LG ++SK+G DY + GPF ++ L + C
Sbjct: 93 PLGIILSKAGSTVEDYVEVARKIGPFADYLELNVSC 128
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.331 0.141 0.485
Gapped
Lambda K H
0.267 0.0715 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,573,923
Number of extensions: 459502
Number of successful extensions: 449
Number of sequences better than 10.0: 1
Number of HSP's gapped: 448
Number of HSP's successfully gapped: 27
Length of query: 114
Length of database: 10,937,602
Length adjustment: 78
Effective length of query: 36
Effective length of database: 7,477,990
Effective search space: 269207640
Effective search space used: 269207640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 53 (24.2 bits)