RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy5072
         (114 letters)



>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell
           membrane, membrane, transmembrane, transport protein;
           HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB:
           3gi9_C* 3gi8_C
          Length = 444

 Score = 50.0 bits (120), Expect = 1e-08
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 8/65 (12%)

Query: 19  AYCYSELGCMISKSGADYAYIMTTFGP-FLAFI---RLWIECMIVRPCSQAIVALTFSIY 74
           AY Y++LG  I  +    A+I    G   +       LW+  +I    S A+ A  F+ Y
Sbjct: 56  AYSYTKLGAKIVSNAGPIAFIHKAIGDNIITGALSILLWMSYVI----SIALFAKGFAGY 111

Query: 75  ALKPF 79
            L   
Sbjct: 112 FLPLI 116


>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound,
           amino-acid transport, cell inner membrane, cell
           membrane, membrane; HET: ARG BNG; 3.00A {Escherichia
           coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A
           3ncy_A
          Length = 445

 Score = 47.3 bits (113), Expect = 1e-07
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 19  AYCYSELGCMISKSGADYAYIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYALKP 78
           +  Y+++  +    G  YAY    FGPFL +    +  +     + A+V +      L  
Sbjct: 57  SMVYAKMSFLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVG--YLSY 114

Query: 79  FFP 81
           FFP
Sbjct: 115 FFP 117


>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT,
           glutamate-GABA antiporter, transport protein; 3.10A
           {Escherichia coli} PDB: 4dji_A
          Length = 511

 Score = 39.1 bits (91), Expect = 9e-05
 Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 4/58 (6%)

Query: 19  AYCYSELGCMIS-KSGADYAYIMTTFGPFLAFI---RLWIECMIVRPCSQAIVALTFS 72
             C +E+  +   + G  +A++  T GP   F      +++  I        V    S
Sbjct: 58  GLCAAEMATVDGWEEGGVFAWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALS 115


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 29.9 bits (66), Expect = 0.13
 Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 9/32 (28%)

Query: 64 QAIVALTFSIYALKPFFPTCDPPDESVRLLAV 95
          QA+  L  S   LK +     P       LA+
Sbjct: 20 QALKKLQAS---LKLYADDSAPA------LAI 42


>3kk7_A Putative cell invasion protein with MAC/perforin; STR genomics,
           joint center for structural genomics, JCSG; 2.46A
           {Bacteroides thetaiotaomicron vpi-5482}
          Length = 541

 Score = 26.9 bits (58), Expect = 2.1
 Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 5/39 (12%)

Query: 38  YIMTTFGPFLAFIRLWIECMIVRPCSQAIVALTFSIYAL 76
           YI   +G     I  W+  + ++  +   +   + IY L
Sbjct: 508 YIPDAYG-----ILDWVNGIPIKAVTMTTLYQRYKIYGL 541


>1f6f_A Placental lactogen; 4-helical bundle, alpha helical bundle, ternary
           complex, FN III domains, beta sheet domains,
           cytokine-receptor complex; 2.30A {Ovis aries} SCOP:
           a.26.1.1
          Length = 199

 Score = 25.2 bits (54), Expect = 5.1
 Identities = 7/33 (21%), Positives = 13/33 (39%)

Query: 72  SIYALKPFFPTCDPPDESVRLLAVCCIYSCYRY 104
             Y +     +    DE+VR +A   ++ C   
Sbjct: 146 EPYPVWSEQSSLTSQDENVRRVAFYRLFHCLHR 178


>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A
           {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A*
           3hb9_A*
          Length = 1150

 Score = 25.3 bits (56), Expect = 6.3
 Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 2/28 (7%)

Query: 8   PAHINTHDKVGAYCYSELGCMISKSGAD 35
           P H++THD  G    +        +G D
Sbjct: 737 PIHLHTHDTSGNGLLTYKQA--IDAGVD 762


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.331    0.141    0.485 

Gapped
Lambda     K      H
   0.267   0.0616    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,766,658
Number of extensions: 90730
Number of successful extensions: 192
Number of sequences better than 10.0: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 10
Length of query: 114
Length of database: 6,701,793
Length adjustment: 77
Effective length of query: 37
Effective length of database: 4,551,876
Effective search space: 168419412
Effective search space used: 168419412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 51 (23.7 bits)