RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5072
         (114 letters)



>d2gy9s1 d.28.1.1 (S:2-80) Ribosomal protein S19 {Escherichia coli
          [TaxId: 562]}
          Length = 79

 Score = 25.1 bits (55), Expect = 1.1
 Identities = 6/33 (18%), Positives = 14/33 (42%), Gaps = 3/33 (9%)

Query: 49 FIRLWIECMIVRPCSQAIVALTFSIYALKPFFP 81
           +R W     + P    ++ LT +++  +   P
Sbjct: 28 PLRTWSRRSTIFP---NMIGLTIAVHNGRQHVP 57


>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM
           domains {Pig (Sus scrofa) [TaxId: 9823]}
          Length = 231

 Score = 24.1 bits (51), Expect = 4.8
 Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 5/42 (11%)

Query: 1   MQHVHVCPAHINTHDKVGAYCYSELGCMISKSGADYAYIMTT 42
            Q        +     + AYC +E G     +G+D A I T 
Sbjct: 104 YQQQKKYLGRMTEEPLMCAYCVTEPG-----AGSDVAGIKTK 140


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.141    0.485 

Gapped
Lambda     K      H
   0.267   0.0441    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 451,248
Number of extensions: 18691
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 3
Length of query: 114
Length of database: 2,407,596
Length adjustment: 72
Effective length of query: 42
Effective length of database: 1,419,036
Effective search space: 59599512
Effective search space used: 59599512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 47 (22.6 bits)