Query psy5073
Match_columns 115
No_of_seqs 113 out of 1328
Neff 9.9
Searched_HMMs 46136
Date Fri Aug 16 16:33:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5073.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5073hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0569|consensus 99.7 5.6E-17 1.2E-21 116.2 12.5 105 6-111 368-472 (485)
2 KOG0254|consensus 99.5 1.9E-13 4.2E-18 99.1 12.3 108 4-111 393-501 (513)
3 PRK10077 xylE D-xylose transpo 99.5 2.1E-12 4.6E-17 92.3 13.0 103 11-113 369-477 (479)
4 PF00083 Sugar_tr: Sugar (and 99.5 9.4E-16 2E-20 108.8 -4.3 102 7-108 350-451 (451)
5 TIGR00887 2A0109 phosphate:H+ 99.5 7.5E-13 1.6E-17 95.7 9.8 89 17-106 403-501 (502)
6 KOG0252|consensus 99.3 4E-12 8.6E-17 90.4 5.5 100 9-109 409-513 (538)
7 TIGR00879 SP MFS transporter, 99.2 3.9E-10 8.6E-15 79.6 9.6 96 8-103 385-480 (481)
8 TIGR01299 synapt_SV2 synaptic 99.1 2.3E-09 4.9E-14 81.1 10.3 79 21-101 663-741 (742)
9 TIGR00893 2A0114 d-galactonate 98.9 1.9E-08 4.2E-13 69.3 10.1 79 20-98 96-174 (399)
10 TIGR00898 2A0119 cation transp 98.9 1.3E-08 2.8E-13 73.6 9.0 78 23-103 427-504 (505)
11 TIGR00880 2_A_01_02 Multidrug 98.9 3.8E-08 8.2E-13 58.7 9.1 74 23-96 68-141 (141)
12 TIGR00903 2A0129 major facilit 98.9 8.7E-08 1.9E-12 67.3 11.6 71 27-97 99-169 (368)
13 PRK10489 enterobactin exporter 98.9 1.7E-08 3.6E-13 71.4 8.1 83 25-107 331-413 (417)
14 PRK10642 proline/glycine betai 98.8 2.1E-08 4.6E-13 72.5 8.2 74 27-101 363-437 (490)
15 TIGR02332 HpaX 4-hydroxyphenyl 98.8 1.3E-07 2.7E-12 67.2 11.5 77 22-98 112-194 (412)
16 COG2814 AraJ Arabinose efflux 98.8 6.5E-08 1.4E-12 68.4 9.7 75 20-94 115-189 (394)
17 PRK03545 putative arabinose tr 98.8 1.1E-07 2.4E-12 66.7 10.9 74 24-97 115-188 (390)
18 PRK15403 multidrug efflux syst 98.8 2E-07 4.4E-12 66.2 12.0 75 24-98 122-196 (413)
19 TIGR00710 efflux_Bcr_CflA drug 98.8 1.2E-07 2.6E-12 65.8 9.7 76 24-99 111-186 (385)
20 KOG0253|consensus 98.8 1.8E-08 4E-13 70.8 5.6 80 20-101 448-527 (528)
21 PRK10213 nepI ribonucleoside t 98.8 2.1E-07 4.5E-12 65.7 10.8 75 23-97 125-199 (394)
22 TIGR00711 efflux_EmrB drug res 98.7 2.4E-08 5.2E-13 71.5 6.0 79 20-98 104-182 (485)
23 TIGR00894 2A0114euk Na(+)-depe 98.7 8.1E-08 1.8E-12 68.9 8.4 79 18-96 143-222 (465)
24 PRK11102 bicyclomycin/multidru 98.7 2E-07 4.4E-12 64.7 10.0 75 23-97 96-170 (377)
25 PRK10473 multidrug efflux syst 98.7 9.6E-08 2.1E-12 66.9 8.1 75 24-98 109-183 (392)
26 TIGR00900 2A0121 H+ Antiporter 98.7 2.8E-07 6.1E-12 63.2 10.0 70 20-89 106-175 (365)
27 PRK11663 regulatory protein Uh 98.7 3.7E-07 8.1E-12 65.1 10.7 73 24-96 129-201 (434)
28 TIGR00887 2A0109 phosphate:H+ 98.7 6.3E-07 1.4E-11 65.1 11.8 76 20-96 129-227 (502)
29 PF07690 MFS_1: Major Facilita 98.7 3.5E-08 7.5E-13 67.5 4.8 81 16-96 95-175 (352)
30 PRK14995 methyl viologen resis 98.7 1.6E-07 3.5E-12 68.1 8.4 75 23-97 111-186 (495)
31 PRK10091 MFS transport protein 98.7 3.6E-07 7.9E-12 64.0 9.7 74 25-98 110-183 (382)
32 TIGR00895 2A0115 benzoate tran 98.7 9.2E-08 2E-12 66.3 6.6 75 23-97 122-196 (398)
33 TIGR00901 2A0125 AmpG-related 98.7 4.8E-07 1E-11 62.6 10.1 77 21-97 98-182 (356)
34 TIGR00889 2A0110 nucleoside tr 98.6 4.4E-07 9.6E-12 64.6 9.8 75 24-98 326-407 (418)
35 COG2271 UhpC Sugar phosphate p 98.6 5.8E-08 1.3E-12 68.8 5.1 89 10-98 121-211 (448)
36 PRK11663 regulatory protein Uh 98.6 3.1E-07 6.8E-12 65.5 8.3 72 28-99 359-430 (434)
37 PRK11551 putative 3-hydroxyphe 98.6 3E-07 6.4E-12 64.6 8.1 75 23-97 120-194 (406)
38 TIGR00712 glpT glycerol-3-phos 98.6 4.5E-07 9.9E-12 64.7 8.8 72 25-96 137-209 (438)
39 PRK15402 multidrug efflux syst 98.6 8.2E-07 1.8E-11 62.6 9.7 75 24-98 119-193 (406)
40 PRK10077 xylE D-xylose transpo 98.5 2.7E-06 5.8E-11 61.1 11.4 75 22-97 136-218 (479)
41 PRK11646 multidrug resistance 98.5 2.4E-06 5.1E-11 60.5 10.9 74 23-97 116-189 (400)
42 PRK09874 drug efflux system pr 98.5 3.3E-06 7.1E-11 59.2 11.3 74 23-96 123-196 (408)
43 TIGR00891 2A0112 putative sial 98.5 3.2E-06 6.9E-11 58.9 10.7 74 23-97 117-192 (405)
44 PRK11273 glpT sn-glycerol-3-ph 98.5 2.5E-06 5.4E-11 61.2 10.1 70 28-97 369-440 (452)
45 KOG2532|consensus 98.5 3.7E-06 8E-11 61.0 10.8 91 20-110 142-237 (466)
46 PRK10054 putative transporter; 98.5 2.6E-06 5.7E-11 60.2 9.8 73 24-97 114-186 (395)
47 TIGR00881 2A0104 phosphoglycer 98.5 2.3E-07 5E-12 63.9 4.4 76 21-96 98-174 (379)
48 PRK12307 putative sialic acid 98.5 1.5E-06 3.2E-11 61.5 8.4 73 23-96 123-195 (426)
49 PRK11010 ampG muropeptide tran 98.4 3.8E-06 8.2E-11 61.1 10.5 79 18-97 119-198 (491)
50 TIGR00879 SP MFS transporter, 98.4 2.9E-06 6.2E-11 60.0 9.5 73 23-96 144-219 (481)
51 PRK10504 putative transporter; 98.4 4E-06 8.6E-11 60.2 10.4 74 23-96 115-188 (471)
52 PRK11273 glpT sn-glycerol-3-ph 98.4 3.7E-06 8E-11 60.3 10.1 74 24-97 138-212 (452)
53 KOG0255|consensus 98.4 5.4E-06 1.2E-10 60.5 11.0 92 16-109 417-508 (521)
54 PLN00028 nitrate transmembrane 98.4 4E-06 8.6E-11 60.7 10.2 67 29-95 146-221 (476)
55 PRK11652 emrD multidrug resist 98.4 9.4E-06 2E-10 57.0 11.5 75 24-98 114-188 (394)
56 TIGR01299 synapt_SV2 synaptic 98.4 1.1E-05 2.3E-10 61.6 11.6 75 21-96 270-357 (742)
57 PRK05122 major facilitator sup 98.4 8.4E-06 1.8E-10 57.3 10.2 76 25-101 321-396 (399)
58 PRK11902 ampG muropeptide tran 98.4 8.6E-06 1.9E-10 57.5 10.2 79 18-97 106-185 (402)
59 PRK09952 shikimate transporter 98.4 8.9E-06 1.9E-10 58.2 10.4 72 24-96 361-435 (438)
60 TIGR00903 2A0129 major facilit 98.3 3.5E-06 7.5E-11 59.3 7.9 71 23-96 297-367 (368)
61 TIGR00899 2A0120 sugar efflux 98.3 6.8E-06 1.5E-10 56.9 9.2 76 22-97 103-180 (375)
62 PRK03893 putative sialic acid 98.3 4.7E-06 1E-10 60.1 8.6 74 22-96 124-197 (496)
63 TIGR00898 2A0119 cation transp 98.3 1.4E-05 3.1E-10 57.8 11.0 75 18-96 192-266 (505)
64 PRK10406 alpha-ketoglutarate t 98.3 5.6E-06 1.2E-10 59.1 8.6 73 25-100 355-429 (432)
65 TIGR00893 2A0114 d-galactonate 98.3 6.6E-06 1.4E-10 56.7 8.6 68 22-89 327-395 (399)
66 PRK11043 putative transporter; 98.3 1.7E-05 3.8E-10 55.8 10.8 70 26-96 114-183 (401)
67 PRK10642 proline/glycine betai 98.3 8.7E-06 1.9E-10 59.1 9.5 76 20-96 132-215 (490)
68 TIGR00712 glpT glycerol-3-phos 98.3 4.1E-06 8.9E-11 59.8 7.1 69 29-97 368-437 (438)
69 PRK15075 citrate-proton sympor 98.3 9.2E-06 2E-10 58.0 8.8 80 24-103 349-429 (434)
70 PRK10406 alpha-ketoglutarate t 98.3 1.2E-05 2.7E-10 57.3 9.4 74 23-97 141-222 (432)
71 PRK06814 acylglycerophosphoeth 98.3 1.2E-05 2.7E-10 63.5 10.2 81 15-96 117-197 (1140)
72 PRK12382 putative transporter; 98.3 2.2E-05 4.9E-10 55.0 10.5 70 24-93 320-389 (392)
73 TIGR00886 2A0108 nitrite extru 98.3 1.7E-05 3.6E-10 54.8 9.7 72 25-96 109-191 (366)
74 PRK15462 dipeptide/tripeptide 98.2 1E-05 2.2E-10 59.1 8.8 62 24-85 118-181 (493)
75 PRK12307 putative sialic acid 98.2 1.3E-05 2.8E-10 56.7 9.1 75 22-96 337-412 (426)
76 PRK09556 uhpT sugar phosphate 98.2 1E-05 2.2E-10 58.3 8.6 62 29-90 372-446 (467)
77 PRK15034 nitrate/nitrite trans 98.2 4.3E-05 9.4E-10 55.5 11.7 89 23-111 144-252 (462)
78 PRK03893 putative sialic acid 98.2 5.1E-06 1.1E-10 59.9 6.8 64 20-83 380-443 (496)
79 PRK10207 dipeptide/tripeptide 98.2 1.7E-05 3.6E-10 57.9 9.3 73 21-94 120-194 (489)
80 KOG0255|consensus 98.2 3.9E-05 8.4E-10 56.0 11.2 80 13-96 178-257 (521)
81 cd06174 MFS The Major Facilita 98.2 2.3E-05 5E-10 53.3 9.5 72 18-89 277-348 (352)
82 KOG2533|consensus 98.2 6E-06 1.3E-10 60.3 6.5 87 12-98 140-232 (495)
83 cd06174 MFS The Major Facilita 98.2 2.5E-05 5.4E-10 53.1 9.1 68 22-89 103-170 (352)
84 PRK10489 enterobactin exporter 98.2 5.3E-05 1.2E-09 53.7 10.8 72 25-97 129-200 (417)
85 TIGR00890 2A0111 Oxalate/Forma 98.2 1.7E-05 3.8E-10 54.5 8.1 62 24-85 313-374 (377)
86 PRK15075 citrate-proton sympor 98.2 1.3E-05 2.9E-10 57.2 7.7 56 25-80 136-199 (434)
87 PRK15011 sugar efflux transpor 98.1 4.3E-05 9.4E-10 53.9 10.0 77 22-98 121-199 (393)
88 PRK11551 putative 3-hydroxyphe 98.1 2.1E-05 4.7E-10 55.3 8.5 69 22-90 324-393 (406)
89 PRK09952 shikimate transporter 98.1 2.9E-05 6.2E-10 55.6 9.1 73 24-97 143-223 (438)
90 TIGR00890 2A0111 Oxalate/Forma 98.1 1.2E-05 2.6E-10 55.3 6.3 68 27-95 112-179 (377)
91 PRK03699 putative transporter; 98.1 0.0001 2.2E-09 52.0 10.9 65 25-89 114-179 (394)
92 KOG1330|consensus 98.1 2.4E-07 5.2E-12 66.4 -2.3 77 23-99 138-215 (493)
93 TIGR00892 2A0113 monocarboxyla 98.1 3.3E-05 7.1E-10 55.7 8.4 68 25-93 127-194 (455)
94 PRK11195 lysophospholipid tran 98.1 7.7E-05 1.7E-09 52.8 10.0 79 17-97 99-177 (393)
95 PRK09528 lacY galactoside perm 98.1 2.7E-05 5.9E-10 55.2 7.7 70 27-96 336-406 (420)
96 COG2223 NarK Nitrate/nitrite t 98.1 6E-05 1.3E-09 53.7 9.1 71 24-95 122-195 (417)
97 TIGR00883 2A0106 metabolite-pr 98.0 7.6E-05 1.7E-09 51.6 9.3 73 24-97 114-194 (394)
98 PRK09705 cynX putative cyanate 98.0 0.00012 2.5E-09 51.8 10.3 77 24-100 310-388 (393)
99 PRK09556 uhpT sugar phosphate 98.0 1.1E-05 2.3E-10 58.2 5.1 75 21-95 137-214 (467)
100 PRK09584 tppB putative tripept 98.0 0.00012 2.6E-09 53.5 10.6 62 23-84 129-192 (500)
101 TIGR00805 oat sodium-independe 98.0 6.1E-05 1.3E-09 56.7 9.0 78 18-96 184-283 (633)
102 TIGR00892 2A0113 monocarboxyla 98.0 1.1E-05 2.3E-10 58.2 4.7 65 23-87 350-415 (455)
103 PRK08633 2-acyl-glycerophospho 98.0 0.00011 2.4E-09 58.0 10.6 80 18-97 115-203 (1146)
104 PRK03545 putative arabinose tr 98.0 0.00016 3.5E-09 50.8 10.3 71 23-94 311-381 (390)
105 PRK09874 drug efflux system pr 98.0 5.3E-05 1.1E-09 53.2 7.6 72 24-95 329-400 (408)
106 TIGR00924 yjdL_sub1_fam amino 97.9 0.00013 2.7E-09 53.1 9.3 63 23-85 119-184 (475)
107 PRK15011 sugar efflux transpor 97.9 0.00015 3.3E-09 51.1 9.5 68 27-96 326-393 (393)
108 PRK12382 putative transporter; 97.9 0.00014 3E-09 51.0 9.2 57 25-81 131-187 (392)
109 PRK09705 cynX putative cyanate 97.9 0.00023 4.9E-09 50.3 10.1 62 23-85 114-176 (393)
110 TIGR00897 2A0118 polyol permea 97.9 0.00011 2.4E-09 51.9 8.3 67 29-95 128-195 (402)
111 PF03825 Nuc_H_symport: Nucleo 97.9 0.00026 5.6E-09 50.6 10.1 72 26-97 321-399 (400)
112 TIGR01272 gluP glucose/galacto 97.9 0.00017 3.6E-09 49.7 8.5 75 25-99 29-120 (310)
113 PF06609 TRI12: Fungal trichot 97.9 3.4E-05 7.3E-10 57.6 5.3 74 23-96 147-221 (599)
114 PRK05122 major facilitator sup 97.8 0.00029 6.3E-09 49.5 9.6 62 24-85 130-191 (399)
115 TIGR00899 2A0120 sugar efflux 97.8 0.00035 7.5E-09 48.4 9.3 69 24-94 306-374 (375)
116 TIGR00891 2A0112 putative sial 97.8 0.00019 4.1E-09 50.1 7.7 57 20-76 342-399 (405)
117 TIGR00885 fucP L-fucose:H+ sym 97.8 0.00083 1.8E-08 48.0 10.9 67 29-95 117-210 (410)
118 TIGR00881 2A0104 phosphoglycer 97.7 8.8E-05 1.9E-09 51.0 5.7 53 22-74 326-378 (379)
119 TIGR02718 sider_RhtX_FptX side 97.7 0.0016 3.5E-08 45.7 12.2 72 24-95 115-186 (390)
120 TIGR00806 rfc RFC reduced fola 97.7 0.00068 1.5E-08 49.6 10.0 69 26-95 134-204 (511)
121 TIGR00792 gph sugar (Glycoside 97.7 0.00089 1.9E-08 47.5 10.6 72 26-97 119-198 (437)
122 PTZ00207 hypothetical protein; 97.7 0.0012 2.6E-08 49.5 11.3 69 26-96 140-208 (591)
123 TIGR00792 gph sugar (Glycoside 97.7 0.0011 2.4E-08 47.0 10.5 86 24-110 329-436 (437)
124 PRK03633 putative MFS family t 97.6 0.0012 2.7E-08 46.3 10.2 68 23-90 302-369 (381)
125 PRK11128 putative 3-phenylprop 97.6 0.0013 2.7E-08 46.3 9.9 72 22-96 110-181 (382)
126 TIGR00897 2A0118 polyol permea 97.6 0.0014 2.9E-08 46.5 10.0 61 29-90 338-398 (402)
127 TIGR00883 2A0106 metabolite-pr 97.6 0.00022 4.8E-09 49.3 5.8 56 23-78 329-386 (394)
128 KOG2615|consensus 97.5 0.00018 4E-09 51.1 5.0 72 25-96 139-216 (451)
129 TIGR00896 CynX cyanate transpo 97.5 0.0024 5.1E-08 44.3 10.4 57 26-83 107-165 (355)
130 PRK09669 putative symporter Ya 97.5 0.0044 9.5E-08 44.5 12.0 74 23-96 126-207 (444)
131 TIGR00924 yjdL_sub1_fam amino 97.5 0.0015 3.2E-08 47.6 9.6 73 22-94 397-469 (475)
132 TIGR01301 GPH_sucrose GPH fami 97.5 0.0018 3.9E-08 47.4 9.8 80 17-97 126-222 (477)
133 PF11700 ATG22: Vacuole efflux 97.5 0.00098 2.1E-08 48.7 8.4 86 13-99 387-473 (477)
134 PF05977 MFS_3: Transmembrane 97.5 0.0014 3.1E-08 48.4 9.0 73 16-88 113-185 (524)
135 PRK11010 ampG muropeptide tran 97.4 0.0013 2.9E-08 48.0 8.6 70 26-96 336-405 (491)
136 TIGR00902 2A0127 phenyl propri 97.4 0.0022 4.9E-08 45.1 9.3 57 23-81 111-167 (382)
137 KOG0254|consensus 97.4 0.0029 6.3E-08 46.4 10.0 70 25-96 161-232 (513)
138 PRK11462 putative transporter; 97.4 0.0062 1.4E-07 44.2 11.3 83 13-96 117-207 (460)
139 PF13347 MFS_2: MFS/sugar tran 97.3 0.0019 4.1E-08 46.2 8.2 86 9-95 107-200 (428)
140 PF05977 MFS_3: Transmembrane 97.3 0.0028 6E-08 46.9 9.1 76 23-98 324-400 (524)
141 TIGR02332 HpaX 4-hydroxyphenyl 97.3 0.00072 1.6E-08 48.1 5.9 56 25-80 352-408 (412)
142 PRK10504 putative transporter; 97.3 0.0023 5E-08 46.0 8.2 47 25-71 372-418 (471)
143 KOG3764|consensus 97.2 0.00064 1.4E-08 48.6 4.8 76 25-100 178-254 (464)
144 TIGR00900 2A0121 H+ Antiporter 97.1 0.0035 7.6E-08 42.9 7.3 48 23-70 318-365 (365)
145 PF01306 LacY_symp: LacY proto 97.1 0.0074 1.6E-07 43.5 8.9 70 30-99 336-406 (412)
146 PRK03633 putative MFS family t 97.1 0.01 2.2E-07 41.6 9.5 45 25-69 113-157 (381)
147 PRK03699 putative transporter; 97.1 0.0032 7E-08 44.4 7.0 65 23-88 311-375 (394)
148 PRK08633 2-acyl-glycerophospho 97.1 0.0065 1.4E-07 48.3 9.2 72 24-95 340-412 (1146)
149 PRK10054 putative transporter; 97.1 0.0078 1.7E-07 42.7 8.8 71 24-95 316-386 (395)
150 PRK11646 multidrug resistance 97.1 0.0039 8.5E-08 44.2 7.3 45 25-69 316-360 (400)
151 COG2271 UhpC Sugar phosphate p 97.0 0.001 2.2E-08 47.8 4.1 69 26-94 366-435 (448)
152 KOG2816|consensus 97.0 0.0064 1.4E-07 44.4 8.0 77 24-100 130-206 (463)
153 KOG2504|consensus 97.0 0.004 8.6E-08 46.0 6.8 64 31-94 159-222 (509)
154 TIGR02718 sider_RhtX_FptX side 97.0 0.014 3E-07 41.0 9.4 59 29-87 326-385 (390)
155 KOG0253|consensus 96.8 0.013 2.9E-07 42.1 8.2 75 20-96 179-253 (528)
156 PRK10133 L-fucose transporter; 96.8 0.03 6.5E-07 40.4 10.4 42 25-66 136-177 (438)
157 PRK06814 acylglycerophosphoeth 96.8 0.01 2.2E-07 47.4 8.5 66 23-88 351-417 (1140)
158 TIGR00902 2A0127 phenyl propri 96.8 0.028 6E-07 39.6 9.9 62 25-88 312-374 (382)
159 PF00854 PTR2: POT family; In 96.8 0.014 3E-07 41.1 8.2 72 18-89 45-119 (372)
160 TIGR00895 2A0115 benzoate tran 96.8 0.006 1.3E-07 42.3 6.4 44 22-65 354-397 (398)
161 PRK10091 MFS transport protein 96.8 0.026 5.5E-07 39.7 9.5 65 29-95 313-378 (382)
162 TIGR00788 fbt folate/biopterin 96.8 0.008 1.7E-07 43.8 7.1 53 17-70 363-415 (468)
163 PLN00028 nitrate transmembrane 96.8 0.008 1.7E-07 43.7 7.1 61 27-89 369-429 (476)
164 KOG0569|consensus 96.8 0.0086 1.9E-07 44.0 7.1 70 26-96 136-207 (485)
165 TIGR00894 2A0114euk Na(+)-depe 96.7 0.005 1.1E-07 44.4 5.5 62 27-89 382-446 (465)
166 COG2211 MelB Na+/melibiose sym 96.7 0.023 4.9E-07 41.6 8.7 88 8-96 115-210 (467)
167 TIGR00882 2A0105 oligosacchari 96.6 0.03 6.4E-07 39.5 8.8 55 41-96 132-186 (396)
168 PRK10429 melibiose:sodium symp 96.6 0.15 3.2E-06 37.2 12.4 73 24-96 124-204 (473)
169 PF03209 PUCC: PUCC protein; 96.5 0.022 4.7E-07 40.9 7.7 49 24-72 107-155 (403)
170 TIGR00882 2A0105 oligosacchari 96.5 0.016 3.5E-07 40.8 7.1 63 29-91 330-393 (396)
171 TIGR00788 fbt folate/biopterin 96.5 0.025 5.4E-07 41.2 7.9 74 22-97 136-212 (468)
172 PRK09584 tppB putative tripept 96.4 0.0098 2.1E-07 43.7 5.5 73 18-90 394-476 (500)
173 KOG3762|consensus 96.4 0.0038 8.2E-08 46.4 3.3 66 23-88 476-542 (618)
174 COG2814 AraJ Arabinose efflux 96.3 0.13 2.8E-06 37.0 10.6 64 30-94 324-387 (394)
175 PRK15402 multidrug efflux syst 96.3 0.053 1.2E-06 38.3 8.7 62 34-95 336-397 (406)
176 COG3104 PTR2 Dipeptide/tripept 96.3 0.0022 4.7E-08 47.0 1.6 70 24-94 135-206 (498)
177 PRK09528 lacY galactoside perm 96.3 0.026 5.6E-07 40.1 7.0 57 38-95 137-193 (420)
178 PRK11902 ampG muropeptide tran 96.3 0.081 1.8E-06 37.4 9.4 63 24-90 325-387 (402)
179 PF06813 Nodulin-like: Nodulin 96.2 0.019 4.1E-07 38.7 5.7 40 30-70 120-159 (250)
180 PRK09669 putative symporter Ya 96.2 0.12 2.7E-06 37.1 10.1 50 22-71 335-391 (444)
181 COG2270 Permeases of the major 96.1 0.025 5.4E-07 40.9 6.2 86 14-100 349-435 (438)
182 PRK09848 glucuronide transport 96.1 0.13 2.7E-06 37.0 10.0 47 24-70 337-390 (448)
183 PF00083 Sugar_tr: Sugar (and 96.0 7.2E-05 1.6E-09 53.4 -7.2 74 22-96 118-194 (451)
184 TIGR00926 2A1704 Peptide:H+ sy 95.6 0.39 8.4E-06 36.9 11.0 67 23-89 102-178 (654)
185 PF11700 ATG22: Vacuole efflux 95.6 0.14 2.9E-06 37.8 8.3 76 23-98 143-252 (477)
186 TIGR01301 GPH_sucrose GPH fami 95.6 0.15 3.3E-06 37.5 8.4 79 20-98 394-476 (477)
187 PRK10213 nepI ribonucleoside t 95.4 0.4 8.6E-06 34.0 9.9 63 25-88 324-386 (394)
188 TIGR00710 efflux_Bcr_CflA drug 95.4 0.32 6.9E-06 33.7 9.3 42 23-65 317-358 (385)
189 PRK11043 putative transporter; 95.2 0.3 6.6E-06 34.4 8.8 44 24-68 314-357 (401)
190 PF03092 BT1: BT1 family; Int 95.1 0.21 4.6E-06 36.2 7.9 66 29-95 109-177 (433)
191 PF03092 BT1: BT1 family; Int 95.1 0.28 6.1E-06 35.6 8.5 77 20-98 333-417 (433)
192 PRK11195 lysophospholipid tran 95.0 0.4 8.6E-06 34.0 9.1 52 27-79 314-366 (393)
193 PRK11128 putative 3-phenylprop 94.9 0.59 1.3E-05 32.9 9.7 62 25-88 312-374 (382)
194 PF07690 MFS_1: Major Facilita 94.9 0.1 2.3E-06 35.5 5.7 40 20-59 313-352 (352)
195 KOG2504|consensus 94.8 0.012 2.5E-07 43.6 1.0 80 10-89 392-472 (509)
196 PRK11462 putative transporter; 94.8 0.47 1E-05 34.6 9.0 47 23-69 335-388 (460)
197 PRK10429 melibiose:sodium symp 94.7 0.73 1.6E-05 33.6 9.9 48 23-70 341-395 (473)
198 PRK15034 nitrate/nitrite trans 94.5 0.71 1.5E-05 34.0 9.4 54 39-92 399-453 (462)
199 KOG4686|consensus 94.3 0.12 2.6E-06 36.3 4.7 59 8-70 358-416 (459)
200 PRK11102 bicyclomycin/multidru 94.3 0.78 1.7E-05 31.9 9.0 24 27-51 308-331 (377)
201 TIGR00769 AAA ADP/ATP carrier 94.2 1.1 2.5E-05 33.1 9.9 50 18-67 140-190 (472)
202 TIGR01272 gluP glucose/galacto 94.2 0.42 9E-06 33.0 7.3 59 18-78 242-300 (310)
203 PRK10473 multidrug efflux syst 94.1 0.34 7.4E-06 34.0 7.0 48 30-80 314-361 (392)
204 PRK15403 multidrug efflux syst 94.1 0.69 1.5E-05 33.1 8.5 65 39-104 344-409 (413)
205 TIGR00711 efflux_EmrB drug res 93.6 0.59 1.3E-05 33.7 7.6 42 29-70 371-412 (485)
206 PRK11652 emrD multidrug resist 93.6 1.3 2.7E-05 31.2 9.1 44 24-68 317-360 (394)
207 PRK10207 dipeptide/tripeptide 93.6 1.5 3.2E-05 32.4 9.6 71 23-93 396-476 (489)
208 COG2223 NarK Nitrate/nitrite t 93.3 0.52 1.1E-05 34.2 6.7 73 18-92 327-400 (417)
209 COG0738 FucP Fucose permease [ 93.3 0.25 5.5E-06 35.7 5.0 71 14-86 332-402 (422)
210 PRK15462 dipeptide/tripeptide 93.0 2.2 4.8E-05 31.7 9.7 49 17-65 388-437 (493)
211 PF03219 TLC: TLC ATP/ADP tran 93.0 2.7 5.8E-05 31.3 10.1 43 25-67 163-205 (491)
212 COG2807 CynX Cyanate permease 92.3 2.7 5.9E-05 30.3 8.9 67 24-91 117-184 (395)
213 KOG2532|consensus 92.3 0.29 6.3E-06 36.0 4.4 64 29-92 379-446 (466)
214 KOG2325|consensus 92.1 1 2.2E-05 33.5 7.0 73 24-96 147-232 (488)
215 TIGR00885 fucP L-fucose:H+ sym 91.5 1.4 3.1E-05 31.5 7.2 59 18-78 333-397 (410)
216 COG0738 FucP Fucose permease [ 91.5 2.9 6.4E-05 30.4 8.5 38 30-67 128-165 (422)
217 PRK09848 glucuronide transport 91.5 4 8.7E-05 29.4 12.7 23 28-50 131-154 (448)
218 COG2211 MelB Na+/melibiose sym 89.5 7.1 0.00015 29.0 10.5 52 18-69 339-397 (467)
219 TIGR00901 2A0125 AmpG-related 89.1 0.6 1.3E-05 32.3 3.5 29 23-51 326-354 (356)
220 KOG0252|consensus 88.5 1.6 3.5E-05 32.5 5.3 91 7-98 142-250 (538)
221 COG0861 TerC Membrane protein 88.2 6.3 0.00014 26.9 7.7 48 24-71 34-81 (254)
222 PRK10133 L-fucose transporter; 87.6 5.2 0.00011 29.0 7.6 64 20-85 361-425 (438)
223 PRK14995 methyl viologen resis 87.2 4.2 9.2E-05 29.8 7.1 42 27-68 372-413 (495)
224 PF02487 CLN3: CLN3 protein; 86.9 4.2 9E-05 29.6 6.6 61 8-68 337-397 (402)
225 PTZ00207 hypothetical protein; 86.3 6.9 0.00015 29.9 7.8 76 22-98 468-557 (591)
226 TIGR00896 CynX cyanate transpo 85.6 6 0.00013 27.3 6.9 42 29-70 308-350 (355)
227 PF10183 ESSS: ESSS subunit of 85.5 2.3 4.9E-05 24.9 4.0 34 67-100 55-88 (105)
228 KOG2563|consensus 84.8 2 4.3E-05 31.8 4.2 40 30-69 164-203 (480)
229 KOG3626|consensus 84.7 13 0.00027 29.4 8.6 85 13-98 244-347 (735)
230 KOG3626|consensus 83.3 1.9 4.2E-05 33.7 3.8 51 17-68 598-649 (735)
231 COG3104 PTR2 Dipeptide/tripept 83.0 8.4 0.00018 28.9 6.8 88 8-95 396-489 (498)
232 PF03741 TerC: Integral membra 81.0 12 0.00027 24.1 9.2 52 27-80 17-68 (183)
233 KOG1330|consensus 80.4 3.5 7.6E-05 30.7 4.1 54 18-72 362-417 (493)
234 TIGR00986 3a0801s05tom22 mitoc 80.0 9.5 0.00021 23.7 5.3 23 31-53 58-80 (145)
235 COG0477 ProP Permeases of the 79.5 14 0.0003 23.8 9.1 60 22-81 110-173 (338)
236 COG2807 CynX Cyanate permease 79.2 22 0.00047 25.9 9.2 63 30-92 320-384 (395)
237 TIGR00805 oat sodium-independe 74.2 4.8 0.0001 30.8 3.6 50 18-68 531-581 (633)
238 KOG2563|consensus 73.7 2.1 4.6E-05 31.6 1.5 83 13-95 366-452 (480)
239 PF01306 LacY_symp: LacY proto 73.1 4.8 0.0001 29.3 3.2 52 41-93 137-188 (412)
240 COG3202 ATP/ADP translocase [E 71.0 43 0.00093 25.3 10.3 43 26-68 168-210 (509)
241 TIGR03716 R_switched_YkoY inte 68.9 31 0.00068 22.9 7.1 40 29-68 16-55 (215)
242 PF05978 UNC-93: Ion channel r 66.4 29 0.00064 21.7 6.9 38 23-60 106-143 (156)
243 KOG3098|consensus 66.0 54 0.0012 24.5 7.7 47 18-65 365-411 (461)
244 PF04281 Tom22: Mitochondrial 65.5 29 0.00064 21.4 6.9 24 31-54 60-83 (137)
245 PF12832 MFS_1_like: MFS_1 lik 64.7 21 0.00045 19.4 7.2 40 37-76 30-69 (77)
246 KOG1237|consensus 64.0 64 0.0014 24.8 7.8 40 30-69 482-521 (571)
247 PRK03612 spermidine synthase; 63.5 62 0.0013 24.4 8.6 49 41-89 144-193 (521)
248 KOG2615|consensus 62.9 18 0.0004 26.6 4.3 44 25-68 371-414 (451)
249 KOG3764|consensus 61.5 24 0.00053 26.1 4.7 52 39-90 400-451 (464)
250 PF05631 DUF791: Protein of un 61.1 60 0.0013 23.4 9.2 67 33-99 153-222 (354)
251 KOG2533|consensus 60.8 14 0.0003 27.7 3.6 53 27-79 388-442 (495)
252 TIGR00769 AAA ADP/ATP carrier 60.2 70 0.0015 23.9 9.3 50 29-78 289-339 (472)
253 PF04647 AgrB: Accessory gene 59.6 34 0.00075 21.6 4.9 22 80-101 106-128 (185)
254 PF12273 RCR: Chitin synthesis 59.6 4.8 0.0001 24.3 0.9 13 73-85 2-14 (130)
255 smart00793 AgrB Accessory gene 59.4 38 0.00082 21.7 5.0 20 82-101 108-128 (184)
256 KOG2325|consensus 57.9 2.6 5.7E-05 31.4 -0.5 64 27-90 409-472 (488)
257 PF03137 OATP: Organic Anion T 57.7 1.9 4E-05 32.5 -1.4 43 24-66 159-201 (539)
258 TIGR00926 2A1704 Peptide:H+ sy 57.7 90 0.002 24.4 9.1 58 30-88 589-646 (654)
259 KOG1237|consensus 56.0 48 0.001 25.4 5.7 68 21-88 167-240 (571)
260 COG1575 MenA 1,4-dihydroxy-2-n 54.2 55 0.0012 23.0 5.4 21 60-80 163-183 (303)
261 KOG3810|consensus 51.7 80 0.0017 23.2 5.9 71 27-97 115-186 (433)
262 PF13347 MFS_2: MFS/sugar tran 51.2 89 0.0019 22.4 9.8 51 20-70 329-386 (428)
263 PF02554 CstA: Carbon starvati 49.5 46 0.00099 24.2 4.5 63 45-108 57-123 (376)
264 PRK01100 putative accessory ge 48.6 73 0.0016 21.0 5.1 19 83-101 121-140 (210)
265 KOG4473|consensus 47.3 86 0.0019 21.1 5.2 37 36-72 158-194 (247)
266 PF03137 OATP: Organic Anion T 46.9 6.4 0.00014 29.7 0.0 50 20-70 466-516 (539)
267 PF02487 CLN3: CLN3 protein; 45.7 44 0.00096 24.5 4.0 73 17-94 122-196 (402)
268 COG1966 CstA Carbon starvation 45.3 30 0.00064 26.5 3.2 66 44-110 56-125 (575)
269 TIGR00886 2A0108 nitrite extru 43.3 1.1E+02 0.0023 21.0 9.0 38 41-78 36-73 (366)
270 TIGR03718 R_switched_Alx integ 42.6 1.2E+02 0.0026 21.4 9.1 46 34-81 91-136 (302)
271 PF01914 MarC: MarC family int 41.7 99 0.0022 20.2 10.8 65 24-89 21-86 (203)
272 KOG2816|consensus 41.5 1.5E+02 0.0032 22.2 8.2 51 18-68 342-392 (463)
273 PF11511 RhodobacterPufX: Intr 41.3 58 0.0013 17.4 5.6 34 65-98 24-57 (67)
274 PF04120 Iron_permease: Low af 40.6 71 0.0015 19.6 3.8 26 75-101 43-68 (132)
275 cd01031 EriC ClC chloride chan 39.3 1.2E+02 0.0026 21.9 5.5 26 87-112 53-78 (402)
276 KOG3880|consensus 37.7 57 0.0012 23.6 3.4 61 7-67 343-403 (409)
277 PF07672 MFS_Mycoplasma: Mycop 37.6 42 0.00091 23.2 2.8 26 69-94 38-63 (267)
278 COG3817 Predicted membrane pro 37.4 1.1E+02 0.0024 21.2 4.6 41 13-53 176-216 (313)
279 PF06379 RhaT: L-rhamnose-prot 36.8 1E+02 0.0023 22.1 4.6 19 33-51 88-106 (344)
280 PF06963 FPN1: Ferroportin1 (F 34.9 1.3E+02 0.0027 22.3 5.0 57 36-92 143-199 (432)
281 TIGR00939 2a57 Equilibrative N 34.8 1.9E+02 0.0041 21.4 7.2 45 18-62 384-428 (437)
282 PF02532 PsbI: Photosystem II 34.7 52 0.0011 15.3 2.0 24 76-99 7-30 (36)
283 COG4512 AgrB Membrane protein 34.1 1.3E+02 0.0028 19.6 4.3 19 83-101 114-133 (198)
284 COG3817 Predicted membrane pro 31.7 1.8E+02 0.0039 20.3 7.9 77 31-107 78-160 (313)
285 PF10997 DUF2837: Protein of u 31.2 1.8E+02 0.0039 20.0 7.1 55 8-65 148-202 (254)
286 COG5336 Uncharacterized protei 29.3 1.3E+02 0.0028 17.9 7.2 54 36-89 36-91 (116)
287 TIGR03717 R_switched_YjbE inte 28.7 1.6E+02 0.0035 18.8 8.9 40 28-67 20-59 (176)
288 PF13829 DUF4191: Domain of un 28.7 1.9E+02 0.0041 19.5 6.3 9 73-81 53-61 (224)
289 KOG3574|consensus 27.8 88 0.0019 23.4 3.1 47 26-72 389-435 (510)
290 COG1972 NupC Nucleoside permea 27.2 2.6E+02 0.0056 20.6 6.4 66 31-100 154-221 (404)
291 PRK05277 chloride channel prot 27.0 2.3E+02 0.0051 20.8 5.3 25 87-111 60-84 (438)
292 PF04226 Transgly_assoc: Trans 26.6 92 0.002 15.3 5.0 19 72-90 25-43 (48)
293 TIGR03078 CH4_NH3mon_ox_C meth 26.1 1.7E+02 0.0036 19.6 3.9 30 75-104 51-80 (229)
294 COG5478 Predicted small integr 26.1 53 0.0012 20.3 1.6 22 87-108 59-80 (141)
295 PRK15015 carbon starvation pro 26.1 79 0.0017 25.0 2.8 63 45-108 88-154 (701)
296 PHA02692 hypothetical protein; 26.0 1.2E+02 0.0026 16.4 2.9 8 70-77 44-51 (70)
297 TIGR00427 membrane protein, Ma 25.0 2.1E+02 0.0045 18.7 9.3 61 30-90 29-90 (201)
298 PF06645 SPC12: Microsomal sig 24.8 1.3E+02 0.0028 16.4 4.5 30 54-85 19-48 (76)
299 COG1422 Predicted membrane pro 24.3 2.2E+02 0.0048 18.9 4.5 25 69-93 44-68 (201)
300 PF06963 FPN1: Ferroportin1 (F 24.2 3E+02 0.0066 20.4 10.4 47 21-70 275-321 (432)
301 COG2270 Permeases of the major 24.2 3.1E+02 0.0068 20.6 5.8 36 42-77 288-323 (438)
302 PRK11111 hypothetical protein; 24.1 2.2E+02 0.0048 18.9 9.8 61 30-90 32-93 (214)
303 KOG1373|consensus 23.6 1.5E+02 0.0032 21.9 3.6 38 74-111 360-397 (476)
304 PF15061 DUF4538: Domain of un 23.4 1.3E+02 0.0027 15.7 3.5 19 70-88 4-22 (58)
305 COG0038 EriC Chloride channel 22.9 3.2E+02 0.007 20.3 5.4 25 87-111 80-104 (443)
306 PF15192 TMEM213: TMEM213 fami 22.6 1.5E+02 0.0032 16.3 2.8 14 62-75 45-58 (82)
307 cd01036 ClC_euk Chloride chann 22.0 2.9E+02 0.0062 20.2 5.0 27 84-110 50-76 (416)
308 PF11023 DUF2614: Protein of u 21.9 1.9E+02 0.0042 17.3 5.4 11 38-48 10-20 (114)
309 PF06027 DUF914: Eukaryotic pr 21.7 1.5E+02 0.0032 21.2 3.4 11 84-94 297-307 (334)
310 PF10753 DUF2566: Protein of u 21.4 1.4E+02 0.003 15.4 3.1 25 71-95 2-26 (55)
311 PF09788 Tmemb_55A: Transmembr 20.7 3E+02 0.0064 19.0 5.6 9 39-47 194-202 (256)
312 TIGR00751 menA 1,4-dihydroxy-2 20.7 3E+02 0.0065 19.0 6.8 48 28-79 123-170 (284)
313 cd03685 ClC_6_like ClC-6-like 20.4 3.3E+02 0.0071 20.4 5.0 28 83-110 90-117 (466)
314 PF05978 UNC-93: Ion channel r 20.2 2.4E+02 0.0051 17.6 7.4 35 37-75 36-70 (156)
No 1
>KOG0569|consensus
Probab=99.74 E-value=5.6e-17 Score=116.20 Aligned_cols=105 Identities=29% Similarity=0.520 Sum_probs=98.8
Q ss_pred hHHHHHHHHHHHHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH
Q psy5073 6 WIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLG 85 (115)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (115)
+..+.+.+++.+.++.|+||++|.+.+|+||++.|+.++++....+|+..++....++.+.+..|. ..|.++.+.+++.
T Consensus 368 y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~ 446 (485)
T KOG0569|consen 368 YLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIF 446 (485)
T ss_pred HHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHH
Confidence 345788889999999999999999999999999999999999999999999999999999999997 7999999999999
Q ss_pred HHHHHhhcccCCCCCHHHHHHHHhcc
Q psy5073 86 AVFVYTRVPETKNKSFEAIQAELAMG 111 (115)
Q Consensus 86 ~~~~~~~~pet~~~~~~~~~~~~~~~ 111 (115)
.++.++++||||+|+.+|+.++++++
T Consensus 447 ~i~~~~~lPETkgr~~~eI~~~~~~~ 472 (485)
T KOG0569|consen 447 LIYLYRYLPETKGRTPYEIIEELEKR 472 (485)
T ss_pred HHHHHHhCcccCCCCHHHHHHHHHhC
Confidence 99999999999999999998888765
No 2
>KOG0254|consensus
Probab=99.54 E-value=1.9e-13 Score=99.13 Aligned_cols=108 Identities=35% Similarity=0.716 Sum_probs=96.5
Q ss_pred cchHHHHHHHHHHHHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Q psy5073 4 YSWIPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICT 83 (115)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (115)
..+..+.+.+++...++.+.+|++|.+.+|+||.+.|+++.+++...+|...++....++.+....+....|..+..++.
T Consensus 393 ~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~ 472 (513)
T KOG0254|consen 393 AGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICL 472 (513)
T ss_pred hhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 35678888899999999999999999999999999999999999999999999999999999888764568888888888
Q ss_pred HHHH-HHHhhcccCCCCCHHHHHHHHhcc
Q psy5073 84 LGAV-FVYTRVPETKNKSFEAIQAELAMG 111 (115)
Q Consensus 84 ~~~~-~~~~~~pet~~~~~~~~~~~~~~~ 111 (115)
+... +.+++.||||+++++|+++.+.++
T Consensus 473 ~~~~~fv~~~~pETkg~sleei~~~~~~~ 501 (513)
T KOG0254|consen 473 LSLIIFVFFFVPETKGLTLEEINELFEEG 501 (513)
T ss_pred HHHHHHheEEcccCCCCcHHHHHHHHHcC
Confidence 8877 788999999999999999887664
No 3
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.47 E-value=2.1e-12 Score=92.28 Aligned_cols=103 Identities=26% Similarity=0.440 Sum_probs=83.6
Q ss_pred HHHHHHHHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhhchhHHHHHHHHHHHH
Q psy5073 11 SVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLI------DTVGSAATYGLLGVICTL 84 (115)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 84 (115)
++.++.+.+..+.+|..+.+++|.+|++.|++++|+.....+++.++++.+++.+. +..++.+.|.++++++++
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (479)
T PRK10077 369 SMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVL 448 (479)
T ss_pred HHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHH
Confidence 44444445555566888889999999999999999999999999999988887654 456777788888888888
Q ss_pred HHHHHHhhcccCCCCCHHHHHHHHhcccc
Q psy5073 85 GAVFVYTRVPETKNKSFEAIQAELAMGYT 113 (115)
Q Consensus 85 ~~~~~~~~~pet~~~~~~~~~~~~~~~~~ 113 (115)
..++.+++.||||+++.+|.++.++++.+
T Consensus 449 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 477 (479)
T PRK10077 449 AALFMWKFVPETKGKTLEEMEALWEPETK 477 (479)
T ss_pred HHHHHHhccccCCCCCHHHHHHHHhhccc
Confidence 88888788999999999998888766544
No 4
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.47 E-value=9.4e-16 Score=108.84 Aligned_cols=102 Identities=27% Similarity=0.543 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Q psy5073 7 IPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGA 86 (115)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (115)
..+++.+++...++.++++.++.+.+|+||++.|+++.|++...+++++++.+.+.+.+.+..+....+.+++..+++..
T Consensus 350 ~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~ 429 (451)
T PF00083_consen 350 LSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAI 429 (451)
T ss_pred ccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHH
Confidence 34455556666778889999999999999999999999999999999999999999999888774468888888888888
Q ss_pred HHHHhhcccCCCCCHHHHHHHH
Q psy5073 87 VFVYTRVPETKNKSFEAIQAEL 108 (115)
Q Consensus 87 ~~~~~~~pet~~~~~~~~~~~~ 108 (115)
++.++++||||+++++|++++|
T Consensus 430 i~~~~~lpET~g~~l~ei~~~f 451 (451)
T PF00083_consen 430 IFVYFFLPETKGKTLEEIQEMF 451 (451)
T ss_pred hheeEEEeeCCCCCHHHHHhhC
Confidence 8989999999999999998864
No 5
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.45 E-value=7.5e-13 Score=95.69 Aligned_cols=89 Identities=17% Similarity=0.220 Sum_probs=73.6
Q ss_pred HHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------chhHHHHHHHHHHHHHH
Q psy5073 17 AIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV----------GSAATYGLLGVICTLGA 86 (115)
Q Consensus 17 ~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~ 86 (115)
++++.+.++..+.+.+|++|++.|+++.|+....+++++++++.+.+++.+.. +....+++++++.++..
T Consensus 403 ~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 482 (502)
T TIGR00887 403 FFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGI 482 (502)
T ss_pred HHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHH
Confidence 34566778888888999999999999999999999999999999999998743 33456788887777665
Q ss_pred HHHHhhcccCCCCCHHHHHH
Q psy5073 87 VFVYTRVPETKNKSFEAIQA 106 (115)
Q Consensus 87 ~~~~~~~pet~~~~~~~~~~ 106 (115)
+. .+++|||+++++||+|+
T Consensus 483 i~-~~~lpEt~~~~leei~~ 501 (502)
T TIGR00887 483 LF-TLLIPETKGKSLEELSG 501 (502)
T ss_pred HH-heEeccCCCCCHHhhhC
Confidence 54 46789999999988765
No 6
>KOG0252|consensus
Probab=99.30 E-value=4e-12 Score=90.40 Aligned_cols=100 Identities=22% Similarity=0.261 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhchhHHHHHHHHHHH
Q psy5073 9 IFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID-----TVGSAATYGLLGVICT 83 (115)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 83 (115)
+++..+..++.+.|++....++.+|.||++.|+++-|++.+.+-.+++++...+.++.+ ..+.++++++++..+.
T Consensus 409 ~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~ 488 (538)
T KOG0252|consen 409 VVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCML 488 (538)
T ss_pred eehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHH
Confidence 34556667788899999999999999999999999999999999999999999999999 7788889999998877
Q ss_pred HHHHHHHhhcccCCCCCHHHHHHHHh
Q psy5073 84 LGAVFVYTRVPETKNKSFEAIQAELA 109 (115)
Q Consensus 84 ~~~~~~~~~~pet~~~~~~~~~~~~~ 109 (115)
+..+. .+++|||++++++|++++..
T Consensus 489 ~gi~~-T~l~pEtk~~~leei~~e~~ 513 (538)
T KOG0252|consen 489 LGILF-TLLIPETKGKSLEEISNEEE 513 (538)
T ss_pred HhHhe-eEEeecccccCHHHhcChhh
Confidence 77555 57899999999999865543
No 7
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.16 E-value=3.9e-10 Score=79.63 Aligned_cols=96 Identities=30% Similarity=0.680 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q psy5073 8 PIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAV 87 (115)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (115)
.+....++...++.+..+....+.+|.+|++.|++++++......+++++.+.+.+.+.+..+|++.|++.++++++..+
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i 464 (481)
T TIGR00879 385 AIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLI 464 (481)
T ss_pred HHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHH
Confidence 33444555556677777888888899999999999999999999999999999999999988998889988888888888
Q ss_pred HHHhhcccCCCCCHHH
Q psy5073 88 FVYTRVPETKNKSFEA 103 (115)
Q Consensus 88 ~~~~~~pet~~~~~~~ 103 (115)
...++.||+++++.+|
T Consensus 465 ~~~~~~~~~~~~~~~~ 480 (481)
T TIGR00879 465 FVYFFLPETKGRTLEE 480 (481)
T ss_pred HHheecccCCCCChhh
Confidence 8878889998876543
No 8
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.05 E-value=2.3e-09 Score=81.12 Aligned_cols=79 Identities=14% Similarity=0.186 Sum_probs=62.5
Q ss_pred hcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q psy5073 21 IGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKS 100 (115)
Q Consensus 21 ~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~ 100 (115)
.+..+..+.+++|++|++.|++++|+....+.++++++|.+.+.+.+.. ....|.+.+++.++..++. .++|||+++.
T Consensus 663 ~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~-~~~pf~i~a~~lll~~ll~-~~LPET~~~~ 740 (742)
T TIGR01299 663 IAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGIT-KAAPILFASAALACGGLLA-LKLPDTRGQV 740 (742)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHH-HhCCCCcccc
Confidence 3445667788999999999999999999999999999999999887653 3456777777666655554 4679999875
Q ss_pred H
Q psy5073 101 F 101 (115)
Q Consensus 101 ~ 101 (115)
+
T Consensus 741 l 741 (742)
T TIGR01299 741 L 741 (742)
T ss_pred c
Confidence 3
No 9
>TIGR00893 2A0114 d-galactonate transporter.
Probab=98.92 E-value=1.9e-08 Score=69.28 Aligned_cols=79 Identities=10% Similarity=0.036 Sum_probs=66.1
Q ss_pred hhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCC
Q psy5073 20 RIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKN 98 (115)
Q Consensus 20 ~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 98 (115)
.....+....+++|.+|+|.|+++.++......++..+++.+.+.+.+..+|++.|.+.++..++..+...+..||+++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (399)
T TIGR00893 96 EAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQ 174 (399)
T ss_pred HHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCC
Confidence 3344566667899999999999999999999999999999999999999999999998888777777766666777543
No 10
>TIGR00898 2A0119 cation transport protein.
Probab=98.90 E-value=1.3e-08 Score=73.55 Aligned_cols=78 Identities=14% Similarity=0.127 Sum_probs=61.6
Q ss_pred ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCCCCHH
Q psy5073 23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSFE 102 (115)
Q Consensus 23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~ 102 (115)
..+..+.+.+|.+|++.|++++|+......+++.++|.+.. + ...++...+.+++...++..++ .+++|||++++++
T Consensus 427 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~-~~~lpet~~~~l~ 503 (505)
T TIGR00898 427 AFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGIL-TLFLPETKGVPLP 503 (505)
T ss_pred HHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHH-HHcCcCCCCCCCC
Confidence 34566678999999999999999999999999999999988 3 4445556777777766666555 4578999998765
Q ss_pred H
Q psy5073 103 A 103 (115)
Q Consensus 103 ~ 103 (115)
|
T Consensus 504 ~ 504 (505)
T TIGR00898 504 E 504 (505)
T ss_pred C
Confidence 3
No 11
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=98.88 E-value=3.8e-08 Score=58.71 Aligned_cols=74 Identities=18% Similarity=0.089 Sum_probs=63.8
Q ss_pred ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073 23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPET 96 (115)
Q Consensus 23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 96 (115)
..+....++.|.+|++.|+++.++......++..+++.+.+.+.+..+|++.+.+.+....+..+...+..||+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (141)
T TIGR00880 68 ALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET 141 (141)
T ss_pred HHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 34566678899999999999999999999999999999999999888998888888888777777777777764
No 12
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.86 E-value=8.7e-08 Score=67.29 Aligned_cols=71 Identities=14% Similarity=0.122 Sum_probs=63.4
Q ss_pred hhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCC
Q psy5073 27 PWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETK 97 (115)
Q Consensus 27 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 97 (115)
.....+|.+|+|.|++++++......++..+++.+.+.+.+..|||+.|.+.+++.++..++..+.+||.+
T Consensus 99 ~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p 169 (368)
T TIGR00903 99 AFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALP 169 (368)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34556899999999999999999999999999999999999999999999988888888888888889854
No 13
>PRK10489 enterobactin exporter EntS; Provisional
Probab=98.85 E-value=1.7e-08 Score=71.42 Aligned_cols=83 Identities=10% Similarity=-0.003 Sum_probs=71.9
Q ss_pred chhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHH
Q psy5073 25 PIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSFEAI 104 (115)
Q Consensus 25 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~~~ 104 (115)
+....++.|..|++.|+++.|+......++..+++.+.+.+.+..|....+...+...++...+.....||+|+++.+|+
T Consensus 331 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (417)
T PRK10489 331 LLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPP 410 (417)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 44456789999999999999999999999999999999999999898888888888777777777788899999988887
Q ss_pred HHH
Q psy5073 105 QAE 107 (115)
Q Consensus 105 ~~~ 107 (115)
+++
T Consensus 411 ~~~ 413 (417)
T PRK10489 411 EVD 413 (417)
T ss_pred cCC
Confidence 553
No 14
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=98.84 E-value=2.1e-08 Score=72.55 Aligned_cols=74 Identities=14% Similarity=0.090 Sum_probs=54.0
Q ss_pred hhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHHHhhcccCCCCCH
Q psy5073 27 PWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG-SAATYGLLGVICTLGAVFVYTRVPETKNKSF 101 (115)
Q Consensus 27 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~ 101 (115)
...+.+|++|++.|++++|+.+..+..++.+.|.+.+++.+..+ |...++...+..++..+ ..+++||+++..+
T Consensus 363 ~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~-~~~~~pes~~~~~ 437 (490)
T PRK10642 363 MASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLI-TGVTMKETANRPL 437 (490)
T ss_pred HHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH-HHHHhccccCCCC
Confidence 44568899999999999999888888889999999999887654 54455544444444433 4456799866433
No 15
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=98.82 E-value=1.3e-07 Score=67.17 Aligned_cols=77 Identities=13% Similarity=0.065 Sum_probs=64.2
Q ss_pred cccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhchhHHHHHHHHHHHHHHHHHHhhccc
Q psy5073 22 GIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID------TVGSAATYGLLGVICTLGAVFVYTRVPE 95 (115)
Q Consensus 22 ~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~pe 95 (115)
+..|....+++|.+|++.|++++++......++..+++.+.+++.+ ..||++.|.+.++..++..++..+++||
T Consensus 112 ~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~ 191 (412)
T TIGR02332 112 GFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDD 191 (412)
T ss_pred hHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCC
Confidence 3445555678999999999999999999989999999999888875 2589999999888888777777778888
Q ss_pred CCC
Q psy5073 96 TKN 98 (115)
Q Consensus 96 t~~ 98 (115)
+++
T Consensus 192 ~p~ 194 (412)
T TIGR02332 192 SPD 194 (412)
T ss_pred Ccc
Confidence 754
No 16
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=98.81 E-value=6.5e-08 Score=68.38 Aligned_cols=75 Identities=16% Similarity=0.094 Sum_probs=69.5
Q ss_pred hhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcc
Q psy5073 20 RIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVP 94 (115)
Q Consensus 20 ~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 94 (115)
.....++...+.+|+.|++.|++++++......+...++..++.++-+..|||++|+..+.+.++..+.....+|
T Consensus 115 ~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 115 HGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 334557777889999999999999999999999999999999999999999999999999999999999999999
No 17
>PRK03545 putative arabinose transporter; Provisional
Probab=98.81 E-value=1.1e-07 Score=66.70 Aligned_cols=74 Identities=15% Similarity=0.043 Sum_probs=63.3
Q ss_pred cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCC
Q psy5073 24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETK 97 (115)
Q Consensus 24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 97 (115)
.+....+++|.+|++.|++++|+......++..++|.+...+.+..+|++.|++.+.+.++..+...+..||.+
T Consensus 115 ~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~ 188 (390)
T PRK03545 115 WSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLP 188 (390)
T ss_pred HHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 35555678999999999999999999999999999999999989899999999998888777666666677653
No 18
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=98.80 E-value=2e-07 Score=66.18 Aligned_cols=75 Identities=11% Similarity=0.109 Sum_probs=63.7
Q ss_pred cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCC
Q psy5073 24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKN 98 (115)
Q Consensus 24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 98 (115)
.+..+.++.|.+|++.|.+.+++......++..++|.+++.+.+..+|++.|++.++..++..++..+..||+++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~ 196 (413)
T PRK15403 122 ATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK 196 (413)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 344556789999999999999999999999999999999999888899999999988877776666667898743
No 19
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=98.76 E-value=1.2e-07 Score=65.81 Aligned_cols=76 Identities=17% Similarity=0.086 Sum_probs=64.3
Q ss_pred cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCCC
Q psy5073 24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNK 99 (115)
Q Consensus 24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~ 99 (115)
.+....++.|.+|++.|++..++......++..+++.+.+.+.+..+|++.+.+.++..++..+...+..||++.+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (385)
T TIGR00710 111 SVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPY 186 (385)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 3455568899999999999999999999999999999999999989999999888887777777766777886543
No 20
>KOG0253|consensus
Probab=98.76 E-value=1.8e-08 Score=70.77 Aligned_cols=80 Identities=13% Similarity=0.107 Sum_probs=64.5
Q ss_pred hhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCCC
Q psy5073 20 RIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNK 99 (115)
Q Consensus 20 ~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~ 99 (115)
..+...+.++|.+|.||+..|++|.|.++.++++++++.|.+. +....+......+++...++..+.+.++=-||||+
T Consensus 448 isg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR 525 (528)
T KOG0253|consen 448 ISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGR 525 (528)
T ss_pred HhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCCC
Confidence 3445566778999999999999999999999999999999999 33333434577888888888888777666699998
Q ss_pred CH
Q psy5073 100 SF 101 (115)
Q Consensus 100 ~~ 101 (115)
++
T Consensus 526 ~l 527 (528)
T KOG0253|consen 526 SL 527 (528)
T ss_pred CC
Confidence 74
No 21
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=98.75 E-value=2.1e-07 Score=65.72 Aligned_cols=75 Identities=11% Similarity=0.113 Sum_probs=63.2
Q ss_pred ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCC
Q psy5073 23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETK 97 (115)
Q Consensus 23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 97 (115)
..+....+++|.+|+|.|+++.++......++..++|.+.+.+.+..+|++.|++.+.+.++..++.....||++
T Consensus 125 ~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~ 199 (394)
T PRK10213 125 FWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLP 199 (394)
T ss_pred HHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 446666788999999999999999999999999999999999999999999999888776666555555678754
No 22
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=98.74 E-value=2.4e-08 Score=71.48 Aligned_cols=79 Identities=13% Similarity=0.017 Sum_probs=66.5
Q ss_pred hhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCC
Q psy5073 20 RIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKN 98 (115)
Q Consensus 20 ~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 98 (115)
.....+....++.|.+|++.|+++.++......++..++|.+.+++.+..+|++.|++.+...++..++..+..||+++
T Consensus 104 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 182 (485)
T TIGR00711 104 GGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKP 182 (485)
T ss_pred hhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccc
Confidence 3344566677899999999999999999999999999999999999999999999998888777777776677777543
No 23
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=98.73 E-value=8.1e-08 Score=68.86 Aligned_cols=79 Identities=8% Similarity=0.066 Sum_probs=64.8
Q ss_pred HHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hchhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073 18 IFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT-VGSAATYGLLGVICTLGAVFVYTRVPET 96 (115)
Q Consensus 18 ~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet 96 (115)
.......+....+++|.+|++.|++++|+......++..+++.+.+.+.+. .+|++.|.+.++..++..++.+...+|.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~ 222 (465)
T TIGR00894 143 LAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADD 222 (465)
T ss_pred HhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCC
Confidence 333444566667899999999999999999999999999999999999888 4999999999888777766666666553
No 24
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=98.72 E-value=2e-07 Score=64.75 Aligned_cols=75 Identities=19% Similarity=0.118 Sum_probs=64.2
Q ss_pred ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCC
Q psy5073 23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETK 97 (115)
Q Consensus 23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 97 (115)
..+....+++|.+|++.|++.+++......++..++|.+.+.+.+..+|++.|.+.+.+.++..++..+..||++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (377)
T PRK11102 96 ASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETL 170 (377)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 345566789999999999999999999999999999999999999899999998888887777777667778753
No 25
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=98.71 E-value=9.6e-08 Score=66.94 Aligned_cols=75 Identities=9% Similarity=-0.000 Sum_probs=63.4
Q ss_pred cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCC
Q psy5073 24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKN 98 (115)
Q Consensus 24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 98 (115)
.+....+++|.+|++.|+++.++......++..++|.+...+.+..+|++.+.+.+...++..++..+..||+++
T Consensus 109 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 183 (392)
T PRK10473 109 YVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRP 183 (392)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 345566889999999999999999988888888999998888888899999999888888777777777888644
No 26
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=98.70 E-value=2.8e-07 Score=63.21 Aligned_cols=70 Identities=14% Similarity=0.058 Sum_probs=57.7
Q ss_pred hhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHH
Q psy5073 20 RIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFV 89 (115)
Q Consensus 20 ~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (115)
.....+....+++|.+|++.|++..|+......++..+++.+...+.+..+|++.|++.++..++..++.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 175 (365)
T TIGR00900 106 QAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLI 175 (365)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3334566667899999999999999999999999999999999999999999998887776555554443
No 27
>PRK11663 regulatory protein UhpC; Provisional
Probab=98.69 E-value=3.7e-07 Score=65.11 Aligned_cols=73 Identities=11% Similarity=-0.008 Sum_probs=61.8
Q ss_pred cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073 24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPET 96 (115)
Q Consensus 24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 96 (115)
.+....+++|.+|++.|++++|+......++..+++.+.+.+.+..+|++.|.+.+++.++..++..+.+||+
T Consensus 129 ~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~ 201 (434)
T PRK11663 129 WPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDK 201 (434)
T ss_pred chHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4556678899999999999999999999999999999999999999999999988877766656555566664
No 28
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=98.68 E-value=6.3e-07 Score=65.09 Aligned_cols=76 Identities=13% Similarity=0.053 Sum_probs=56.3
Q ss_pred hhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------hhchhHHHH
Q psy5073 20 RIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID-----------------------TVGSAATYG 76 (115)
Q Consensus 20 ~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~ 76 (115)
..+..+....+++|.+|++.|++++++......++..+++.+...+.. ..+||+.+.
T Consensus 129 ~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~ 208 (502)
T TIGR00887 129 IGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIG 208 (502)
T ss_pred HhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHH
Confidence 333456677899999999999999999988888888787777665532 137998887
Q ss_pred HHHHHHHHHHHHHHhhcccC
Q psy5073 77 LLGVICTLGAVFVYTRVPET 96 (115)
Q Consensus 77 ~~~~~~~~~~~~~~~~~pet 96 (115)
+.++..++. ++..+++||+
T Consensus 209 ~~~ip~~i~-~~~~~~lpES 227 (502)
T TIGR00887 209 FGAVPALLA-LYFRLTIPET 227 (502)
T ss_pred HHHHHHHHH-HHHHHhCCCC
Confidence 666555444 4445788997
No 29
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.67 E-value=3.5e-08 Score=67.50 Aligned_cols=81 Identities=16% Similarity=0.075 Sum_probs=65.4
Q ss_pred HHHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhccc
Q psy5073 16 VAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPE 95 (115)
Q Consensus 16 ~~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe 95 (115)
.+.......+....+++|.+|++.|++..++......++..+++.+.+.+.+..+|++.|++.+++.++..++...+.++
T Consensus 95 ~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~ 174 (352)
T PF07690_consen 95 LGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPE 174 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC--
T ss_pred cccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhh
Confidence 33333445667777899999999999999999999999999999999999888899999999998888887765555554
Q ss_pred C
Q psy5073 96 T 96 (115)
Q Consensus 96 t 96 (115)
+
T Consensus 175 ~ 175 (352)
T PF07690_consen 175 P 175 (352)
T ss_dssp -
T ss_pred c
Confidence 4
No 30
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=98.67 E-value=1.6e-07 Score=68.10 Aligned_cols=75 Identities=9% Similarity=-0.069 Sum_probs=62.2
Q ss_pred ccchhhhhhcccC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCC
Q psy5073 23 IGPIPWFMMAEII-PLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETK 97 (115)
Q Consensus 23 ~~~~~~~~~~E~f-p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 97 (115)
..+.....+.+.+ |++.|++++|+......++..++|.+++.+.+..+|+|.|++...+.++..++..+..||.+
T Consensus 111 ~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~ 186 (495)
T PRK14995 111 IVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQA 186 (495)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3344444455665 78999999999999999999999999999999999999999988888887777777788753
No 31
>PRK10091 MFS transport protein AraJ; Provisional
Probab=98.66 E-value=3.6e-07 Score=64.04 Aligned_cols=74 Identities=14% Similarity=0.049 Sum_probs=61.8
Q ss_pred chhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCC
Q psy5073 25 PIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKN 98 (115)
Q Consensus 25 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 98 (115)
+.....+.|.+|++.|++.+++......++..+++.+...+.+..+|++.|.+.+++..+..+...+..||.++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~ 183 (382)
T PRK10091 110 GVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRD 183 (382)
T ss_pred HHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 44456788999999999999999888889899999999998888999999999888777776666677888643
No 32
>TIGR00895 2A0115 benzoate transport.
Probab=98.65 E-value=9.2e-08 Score=66.33 Aligned_cols=75 Identities=16% Similarity=0.074 Sum_probs=63.5
Q ss_pred ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCC
Q psy5073 23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETK 97 (115)
Q Consensus 23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 97 (115)
..+....+++|.+|++.|+++.++......++..+++.+.+.+.+..+|++.+.+.+....+..++.....||++
T Consensus 122 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (398)
T TIGR00895 122 LMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESI 196 (398)
T ss_pred chhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCC
Confidence 345666789999999999999999999999999999999999999999998888887666666666667788764
No 33
>TIGR00901 2A0125 AmpG-related permease.
Probab=98.65 E-value=4.8e-07 Score=62.60 Aligned_cols=77 Identities=10% Similarity=-0.028 Sum_probs=62.4
Q ss_pred hcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------hhHHHHHHHHHHHHHHHHHHhh
Q psy5073 21 IGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG--------SAATYGLLGVICTLGAVFVYTR 92 (115)
Q Consensus 21 ~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 92 (115)
....+...++++|.+|+|.|+.+.++......++..+++.+...+.+..+ |+..|++.++..++..+...+.
T Consensus 98 ~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~ 177 (356)
T TIGR00901 98 ATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFL 177 (356)
T ss_pred HHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHh
Confidence 33445666789999999999999999999999999999999998888888 9999988888777665555545
Q ss_pred cccCC
Q psy5073 93 VPETK 97 (115)
Q Consensus 93 ~pet~ 97 (115)
.||++
T Consensus 178 ~~e~~ 182 (356)
T TIGR00901 178 AKEPQ 182 (356)
T ss_pred ccCCC
Confidence 67753
No 34
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=98.64 E-value=4.4e-07 Score=64.64 Aligned_cols=75 Identities=8% Similarity=0.010 Sum_probs=62.6
Q ss_pred cchhhhhhcccCChhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhh------chhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073 24 GPIPWFMMAEIIPLEAKLWSSSLLM-CYSWSCLFLVSKVFMDLIDTV------GSAATYGLLGVICTLGAVFVYTRVPET 96 (115)
Q Consensus 24 ~~~~~~~~~E~fp~~~R~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~pet 96 (115)
.+....+++|.+|++.|++++|+.. ....++..++|.+.+++.+.. ||+..|...++..++..++..++.||+
T Consensus 326 ~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 326 NISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 3454567899999999999999997 566789999999999999874 588888888888888888888888987
Q ss_pred CC
Q psy5073 97 KN 98 (115)
Q Consensus 97 ~~ 98 (115)
++
T Consensus 406 ~~ 407 (418)
T TIGR00889 406 HN 407 (418)
T ss_pred cc
Confidence 54
No 35
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=98.64 E-value=5.8e-08 Score=68.84 Aligned_cols=89 Identities=11% Similarity=-0.087 Sum_probs=74.7
Q ss_pred HHHHHHHHHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhchhHHHHHHHHHHHHHHH
Q psy5073 10 FSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVF--MDLIDTVGSAATYGLLGVICTLGAV 87 (115)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (115)
.......+.+....+|.+.-.++-.||+++|++..|+-....++++++.+.+. .++..+.+|++.|++-++++++..+
T Consensus 121 ~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival 200 (448)
T COG2271 121 AVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVAL 200 (448)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Confidence 33344445555555677777899999999999999999999999999999999 8888888999999999999999999
Q ss_pred HHHhhcccCCC
Q psy5073 88 FVYTRVPETKN 98 (115)
Q Consensus 88 ~~~~~~pet~~ 98 (115)
+.++..+||.+
T Consensus 201 ~~~~~~rd~Pq 211 (448)
T COG2271 201 ILLFLLRDRPQ 211 (448)
T ss_pred HHHHHhCCCcc
Confidence 98888877643
No 36
>PRK11663 regulatory protein UhpC; Provisional
Probab=98.61 E-value=3.1e-07 Score=65.50 Aligned_cols=72 Identities=8% Similarity=0.080 Sum_probs=61.3
Q ss_pred hhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCCC
Q psy5073 28 WFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNK 99 (115)
Q Consensus 28 ~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~ 99 (115)
....+|.+|++.|++++|+......++..++|.+.+++.+..||+..|...++..++..+...++.++.+++
T Consensus 359 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 430 (434)
T PRK11663 359 GMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAPR 430 (434)
T ss_pred HHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 446789999999999999999999999999999999999999999889888888777766666566665554
No 37
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=98.61 E-value=3e-07 Score=64.65 Aligned_cols=75 Identities=16% Similarity=0.009 Sum_probs=61.4
Q ss_pred ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCC
Q psy5073 23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETK 97 (115)
Q Consensus 23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 97 (115)
..+....++.|.+|++.|++++++......++..+++.+...+.+..+|++.|++.++..++..++..+++||++
T Consensus 120 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 194 (406)
T PRK11551 120 ALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESR 194 (406)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 345556688999999999999999999888999999988888888889999888887766666666666778863
No 38
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=98.59 E-value=4.5e-07 Score=64.71 Aligned_cols=72 Identities=11% Similarity=-0.036 Sum_probs=58.2
Q ss_pred chhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073 25 PIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID-TVGSAATYGLLGVICTLGAVFVYTRVPET 96 (115)
Q Consensus 25 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~pet 96 (115)
+.....+.|.+|++.|++++|+......+++.+++.+.....+ ..+|++.|++.++..++..+...++.||+
T Consensus 137 ~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~ 209 (438)
T TIGR00712 137 PPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDT 209 (438)
T ss_pred HHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 4455678899999999999999988888888888887766554 46899999998888887777666777775
No 39
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=98.58 E-value=8.2e-07 Score=62.59 Aligned_cols=75 Identities=16% Similarity=0.193 Sum_probs=62.9
Q ss_pred cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCC
Q psy5073 24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKN 98 (115)
Q Consensus 24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 98 (115)
.+.....+.|.+|++.|.++.++......++..++|.+...+.+..+|++.+++.++..++..+...+..||+++
T Consensus 119 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (406)
T PRK15402 119 GAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAG 193 (406)
T ss_pred HHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 355667789999999999999999888888889999999999888899999998888877776666667888754
No 40
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=98.53 E-value=2.7e-06 Score=61.05 Aligned_cols=75 Identities=19% Similarity=0.018 Sum_probs=55.9
Q ss_pred cccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhhchhHHHHHHHHHHHHHHHHHHhhc
Q psy5073 22 GIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLI--------DTVGSAATYGLLGVICTLGAVFVYTRV 93 (115)
Q Consensus 22 ~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (115)
+..+....+++|.+|++.|++++++......++..+.+.+...+. +..+|++.|++.++..++..+ ..+++
T Consensus 136 ~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~-~~~~l 214 (479)
T PRK10077 136 LASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLM-LLYFV 214 (479)
T ss_pred HHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHH-HHHcC
Confidence 344566778999999999999999988877777777766554432 346899999888777666544 45678
Q ss_pred ccCC
Q psy5073 94 PETK 97 (115)
Q Consensus 94 pet~ 97 (115)
||+.
T Consensus 215 ~~s~ 218 (479)
T PRK10077 215 PETP 218 (479)
T ss_pred CCCc
Confidence 9874
No 41
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=98.52 E-value=2.4e-06 Score=60.51 Aligned_cols=74 Identities=18% Similarity=0.051 Sum_probs=61.0
Q ss_pred ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCC
Q psy5073 23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETK 97 (115)
Q Consensus 23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 97 (115)
..|....++.|.+|++.|+++.|+......++..++|.+.+.+. ..+|++.|++.+...++..++..+..||.+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~ 189 (400)
T PRK11646 116 FDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYK 189 (400)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 34555567899999999999999999999999999999999998 779999998888777766655556677643
No 42
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=98.51 E-value=3.3e-06 Score=59.24 Aligned_cols=74 Identities=16% Similarity=0.089 Sum_probs=62.3
Q ss_pred ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073 23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPET 96 (115)
Q Consensus 23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 96 (115)
..+....++.|.+|++.|+++.++......++..+++.+.+.+.+..+|++.+++.++..++..+...++.||.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (408)
T PRK09874 123 FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIREN 196 (408)
T ss_pred hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 34555567889999999999999999888899999999999999989999999998888777777666777765
No 43
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=98.49 E-value=3.2e-06 Score=58.92 Aligned_cols=74 Identities=15% Similarity=0.090 Sum_probs=57.1
Q ss_pred ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--hhHHHHHHHHHHHHHHHHHHhhcccCC
Q psy5073 23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG--SAATYGLLGVICTLGAVFVYTRVPETK 97 (115)
Q Consensus 23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~pet~ 97 (115)
..+....++.|.+|++.|+++.++......++..+++.+.+.+.+..+ |++.|.+.++..++ .++.....||++
T Consensus 117 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~-~~~~~~~~~~~~ 192 (405)
T TIGR00891 117 EYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIF-ALWLRKNIPEAE 192 (405)
T ss_pred hhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHH-HHHHHHhCCCCh
Confidence 345556788999999999999999999999999999999998888766 98888765544333 344455678764
No 44
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=98.48 E-value=2.5e-06 Score=61.20 Aligned_cols=70 Identities=11% Similarity=0.075 Sum_probs=55.1
Q ss_pred hhhhcccCChhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhh-cccCC
Q psy5073 28 WFMMAEIIPLEAKLWSSSLLMCYSWSCLFL-VSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTR-VPETK 97 (115)
Q Consensus 28 ~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pet~ 97 (115)
..+..|.+|++.|+++.|+......+++.+ +|.+.+.+.+..|++..|.+.+..+++..+....+ .+|+|
T Consensus 369 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 440 (452)
T PRK11273 369 GLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKR 440 (452)
T ss_pred HHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 345679999999999999998888887665 68999999999999989988888777766655433 34433
No 45
>KOG2532|consensus
Probab=98.47 E-value=3.7e-06 Score=61.00 Aligned_cols=91 Identities=12% Similarity=0.040 Sum_probs=72.5
Q ss_pred hhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hchhHHHHHHHHHHHHHHHHHHhhcccC--
Q psy5073 20 RIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT-VGSAATYGLLGVICTLGAVFVYTRVPET-- 96 (115)
Q Consensus 20 ~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet-- 96 (115)
.....|....+.+...|+++|++..++......++..+.-.+.+.+.+. .||+++|++++.+.++..++.+++..|.
T Consensus 142 ~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~ 221 (466)
T KOG2532|consen 142 QGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPS 221 (466)
T ss_pred HhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 3344566777899999999999999999999999999999999999998 9999999999999998888877776553
Q ss_pred --CCCCHHHHHHHHhc
Q psy5073 97 --KNKSFEAIQAELAM 110 (115)
Q Consensus 97 --~~~~~~~~~~~~~~ 110 (115)
+..+.+|.+...++
T Consensus 222 ~h~~is~~El~~I~~~ 237 (466)
T KOG2532|consen 222 KHPNISEKELKYIEKG 237 (466)
T ss_pred cCCCCCHHHHHHHHhc
Confidence 22344555444433
No 46
>PRK10054 putative transporter; Provisional
Probab=98.46 E-value=2.6e-06 Score=60.18 Aligned_cols=73 Identities=12% Similarity=-0.013 Sum_probs=59.5
Q ss_pred cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCC
Q psy5073 24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETK 97 (115)
Q Consensus 24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 97 (115)
.+......+|.+|++.|+++.|+.+....++..++|.+.+.+.+ .+|+..|...++..++..+...+..||++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~ 186 (395)
T PRK10054 114 STVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSE 186 (395)
T ss_pred HHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44556678999999999999999999999999999999998875 68998998887777766566656666653
No 47
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=98.46 E-value=2.3e-07 Score=63.88 Aligned_cols=76 Identities=9% Similarity=-0.026 Sum_probs=60.9
Q ss_pred hcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073 21 IGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVS-KVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPET 96 (115)
Q Consensus 21 ~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 96 (115)
....+....+++|.+|++.|+++.++......++..+++ .+...+....+|++.|.+.+.+.++..++..+..||+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (379)
T TIGR00881 98 GMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDS 174 (379)
T ss_pred cccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCC
Confidence 334566777899999999999999999988889888888 4666666778999998888877777766666677764
No 48
>PRK12307 putative sialic acid transporter; Provisional
Probab=98.46 E-value=1.5e-06 Score=61.49 Aligned_cols=73 Identities=15% Similarity=0.068 Sum_probs=54.4
Q ss_pred ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073 23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPET 96 (115)
Q Consensus 23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 96 (115)
..+....++.|.+|+|.|+++.++......++..+++.+.+.+.+..+|++.|++..... +..++.....||+
T Consensus 123 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~~-~~~~~~~~~~p~~ 195 (426)
T PRK12307 123 EYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPV-LLVIYIRARAPES 195 (426)
T ss_pred HHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHHH-HHHHHHHHHCCCC
Confidence 345556678999999999999999998888999999989888888889999887654332 2222222344654
No 49
>PRK11010 ampG muropeptide transporter; Validated
Probab=98.45 E-value=3.8e-06 Score=61.14 Aligned_cols=79 Identities=11% Similarity=0.092 Sum_probs=63.3
Q ss_pred HHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073 18 IFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID-TVGSAATYGLLGVICTLGAVFVYTRVPET 96 (115)
Q Consensus 18 ~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~pet 96 (115)
++.....+...++.+|.+|+++|+++.++......++..+++.+..++.+ ..||+..|++.+...++..+.. +..||+
T Consensus 119 ~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~-~~~~e~ 197 (491)
T PRK11010 119 FCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIAT-LLAPEP 197 (491)
T ss_pred HHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHH-HhcCCC
Confidence 33344556667789999999999999999999999999999999999988 4799999999887766664443 457876
Q ss_pred C
Q psy5073 97 K 97 (115)
Q Consensus 97 ~ 97 (115)
+
T Consensus 198 ~ 198 (491)
T PRK11010 198 T 198 (491)
T ss_pred c
Confidence 3
No 50
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=98.44 E-value=2.9e-06 Score=60.03 Aligned_cols=73 Identities=18% Similarity=0.109 Sum_probs=56.0
Q ss_pred ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073 23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVF---MDLIDTVGSAATYGLLGVICTLGAVFVYTRVPET 96 (115)
Q Consensus 23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 96 (115)
..+....+++|.+|++.|++++++......++..+++.+. .......+|++.|++.++..++ .++..+++||+
T Consensus 144 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~-~~~~~~~l~~~ 219 (481)
T TIGR00879 144 ASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGL-LFLGLFFLPES 219 (481)
T ss_pred HHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHH-HHHHHhcCCCC
Confidence 3455667899999999999999999988889898888888 4444567999988885554444 34455677886
No 51
>PRK10504 putative transporter; Provisional
Probab=98.44 E-value=4e-06 Score=60.19 Aligned_cols=74 Identities=12% Similarity=0.092 Sum_probs=62.1
Q ss_pred ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073 23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPET 96 (115)
Q Consensus 23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 96 (115)
..+....++.|.+|++.|+++.|+......++..++|.+.+.+.+..+|++.|.+......+..+......|+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~ 188 (471)
T PRK10504 115 MVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNY 188 (471)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 34566677899999999999999999999999999999999999999999999888777766666666566654
No 52
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=98.43 E-value=3.7e-06 Score=60.33 Aligned_cols=74 Identities=14% Similarity=-0.048 Sum_probs=53.5
Q ss_pred cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCC
Q psy5073 24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLV-SKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETK 97 (115)
Q Consensus 24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 97 (115)
.+.....+.|.+|++.|++++|+......+++.+. +.+...+....+|++.|++.+++.++..++..+++||+.
T Consensus 138 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~ 212 (452)
T PRK11273 138 WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTP 212 (452)
T ss_pred chHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCH
Confidence 34444568899999999999999887777776444 433333334458999999888877777677777778753
No 53
>KOG0255|consensus
Probab=98.43 E-value=5.4e-06 Score=60.46 Aligned_cols=92 Identities=16% Similarity=0.112 Sum_probs=66.5
Q ss_pred HHHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhccc
Q psy5073 16 VAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPE 95 (115)
Q Consensus 16 ~~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe 95 (115)
.+..+.+.... +.+.+|++|+..|..+.+.....+.++..++|.+....... .....+.+++....+...+...++||
T Consensus 417 ~~~~~~~~~~~-~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~lpe 494 (521)
T KOG0255|consen 417 KFFIGSAFNLI-FLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQM-FPLLGLILFGWLALLLGLLSLLLLPE 494 (521)
T ss_pred HHHHHHHHHHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cccchHHHHHHHHHHHHHHHHhcCcc
Confidence 34444444444 67899999999999999999999999999998887666553 22223333566677777777789999
Q ss_pred CCCCCHHHHHHHHh
Q psy5073 96 TKNKSFEAIQAELA 109 (115)
Q Consensus 96 t~~~~~~~~~~~~~ 109 (115)
|+++.+.+..++.+
T Consensus 495 t~~~~l~~t~~~~~ 508 (521)
T KOG0255|consen 495 TKGKPLPGTLLDAE 508 (521)
T ss_pred cCCCCCchhHHHHH
Confidence 99998765443333
No 54
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=98.43 E-value=4e-06 Score=60.73 Aligned_cols=67 Identities=6% Similarity=-0.014 Sum_probs=51.1
Q ss_pred hhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hhchhHHHHHHHHHHHHHHHHHHhhccc
Q psy5073 29 FMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID---------TVGSAATYGLLGVICTLGAVFVYTRVPE 95 (115)
Q Consensus 29 ~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~pe 95 (115)
.+++|.+|++.|++++|+......++..+++.+.+.+.. ..+|++.|++.+++.++..++..++.++
T Consensus 146 ~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~ 221 (476)
T PLN00028 146 YWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQD 221 (476)
T ss_pred HHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 468999999999999999987777777777666665533 1489999999988887776666554443
No 55
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=98.41 E-value=9.4e-06 Score=56.98 Aligned_cols=75 Identities=17% Similarity=0.057 Sum_probs=60.9
Q ss_pred cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCC
Q psy5073 24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKN 98 (115)
Q Consensus 24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 98 (115)
.+....+..|.+|.+.|+++.++......++..++|.+.+.+.+..+|++.|.+.++..++..+...+..||++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 188 (394)
T PRK11652 114 GVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRP 188 (394)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence 344555778999999999999998888888888999999998888899999988887776666666667788643
No 56
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=98.37 E-value=1.1e-05 Score=61.61 Aligned_cols=75 Identities=17% Similarity=0.048 Sum_probs=56.2
Q ss_pred hcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------chhHHHHHHHHHHHHHHH
Q psy5073 21 IGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV-------------GSAATYGLLGVICTLGAV 87 (115)
Q Consensus 21 ~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~ 87 (115)
.+..+....+++|.+|++.|++.+++......++..+++.+...+.... +|++.+++.++. .+..+
T Consensus 270 g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp-~ll~l 348 (742)
T TIGR01299 270 GGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFP-CVFAI 348 (742)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHH-HHHHH
Confidence 3345777889999999999999999998888888888887776665433 577666665554 44445
Q ss_pred HHHhhcccC
Q psy5073 88 FVYTRVPET 96 (115)
Q Consensus 88 ~~~~~~pet 96 (115)
+..+++||+
T Consensus 349 l~~~~lPES 357 (742)
T TIGR01299 349 GALTFMPES 357 (742)
T ss_pred HHHHHcCCC
Confidence 566788997
No 57
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=98.36 E-value=8.4e-06 Score=57.25 Aligned_cols=76 Identities=8% Similarity=-0.010 Sum_probs=59.8
Q ss_pred chhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCCCCH
Q psy5073 25 PIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSF 101 (115)
Q Consensus 25 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~ 101 (115)
+.......|.+|++.|+++.|+......++..+++.+.+.+.+..|+++.+...+...++..+.. +..++.++++.
T Consensus 321 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 396 (399)
T PRK05122 321 PALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALT-WLLYRRAPRAV 396 (399)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH-HHhcccccccC
Confidence 44445667999999999999999999999989999999999999999988888877777665554 45555555443
No 58
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=98.35 E-value=8.6e-06 Score=57.51 Aligned_cols=79 Identities=14% Similarity=0.122 Sum_probs=62.9
Q ss_pred HHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hchhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073 18 IFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT-VGSAATYGLLGVICTLGAVFVYTRVPET 96 (115)
Q Consensus 18 ~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet 96 (115)
.+.....+...++++|.+|+|+|+++.++......++..+++.+...+.+. .||+..|++.++..++..+ ..+..||+
T Consensus 106 ~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l-~~~~~~e~ 184 (402)
T PRK11902 106 FLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGAL-TTLWAPEP 184 (402)
T ss_pred HHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHH-HHHhcCCC
Confidence 444456677778899999999999999999998889999999988888885 5999999988877665544 34566776
Q ss_pred C
Q psy5073 97 K 97 (115)
Q Consensus 97 ~ 97 (115)
+
T Consensus 185 ~ 185 (402)
T PRK11902 185 E 185 (402)
T ss_pred c
Confidence 3
No 59
>PRK09952 shikimate transporter; Provisional
Probab=98.35 E-value=8.9e-06 Score=58.24 Aligned_cols=72 Identities=8% Similarity=-0.077 Sum_probs=52.6
Q ss_pred cchhhhhhcccCChhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh--chhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073 24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSW-SCLFLVSKVFMDLIDTV--GSAATYGLLGVICTLGAVFVYTRVPET 96 (115)
Q Consensus 24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~pet 96 (115)
.+..+.+++|.+|++.|+++.|+.+..+. ++++++|.+.+++.+.. +|...+.+.++..++..+. .+..+|+
T Consensus 361 ~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~-~~~~~~~ 435 (438)
T PRK09952 361 VCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMT-ALLMKDN 435 (438)
T ss_pred HHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH-HHHcccc
Confidence 44566789999999999999999887765 78899999999998854 3655555555555444444 4456764
No 60
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.34 E-value=3.5e-06 Score=59.28 Aligned_cols=71 Identities=13% Similarity=0.079 Sum_probs=56.0
Q ss_pred ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073 23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPET 96 (115)
Q Consensus 23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 96 (115)
..+..+.+.+|.+|++.|+++.|+.+..+++++..+|.+.+.+.. +.+..|..+++..++..+.. ...|++
T Consensus 297 ~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~-~~~~~~ 367 (368)
T TIGR00903 297 AYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIA-LLLPND 367 (368)
T ss_pred hHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHH-HhCCCC
Confidence 334566789999999999999999999999999999999888774 65667888877777766654 344554
No 61
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=98.33 E-value=6.8e-06 Score=56.93 Aligned_cols=76 Identities=13% Similarity=0.051 Sum_probs=59.1
Q ss_pred cccchhhhhhcccCChhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCC
Q psy5073 22 GIGPIPWFMMAEIIPLEAKLWS--SSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETK 97 (115)
Q Consensus 22 ~~~~~~~~~~~E~fp~~~R~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 97 (115)
...|....+..|..|++.|..+ .++......++..+++.+.+.+.+..+|++.|++.+...++..++..+..||.+
T Consensus 103 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T TIGR00899 103 TANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYP 180 (375)
T ss_pred hhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 3445555677888888877755 567777778889999999999998899999999998877777777666788754
No 62
>PRK03893 putative sialic acid transporter; Provisional
Probab=98.33 E-value=4.7e-06 Score=60.07 Aligned_cols=74 Identities=15% Similarity=0.068 Sum_probs=57.1
Q ss_pred cccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073 22 GIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPET 96 (115)
Q Consensus 22 ~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 96 (115)
+..+....++.|.+|.+.|+++.++......++..+++.+...+.+..+|++.|++..+. ++..++.....||+
T Consensus 124 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~-~~~~~~~~~~~p~~ 197 (496)
T PRK03893 124 GEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILP-IIFALWLRKNLPEA 197 (496)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH-HHHHHHHHHhCCCc
Confidence 344555667899999999999999999999999999999999999999999888764333 33333334456664
No 63
>TIGR00898 2A0119 cation transport protein.
Probab=98.32 E-value=1.4e-05 Score=57.80 Aligned_cols=75 Identities=16% Similarity=0.019 Sum_probs=56.3
Q ss_pred HHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073 18 IFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPET 96 (115)
Q Consensus 18 ~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 96 (115)
+...+..+....+++|.+|++.|+...++......++..+.+.+...+. +|++.+++.++..++..+.. +++||+
T Consensus 192 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~---~wr~~~~~~~i~~~~~~~~~-~~~~es 266 (505)
T TIGR00898 192 MGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP---DWRWLQLAVSLPTFLFFLLS-WFVPES 266 (505)
T ss_pred hhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHH-HhcCCC
Confidence 3333445677778999999999999999997777777777777665543 38989888888776665554 678885
No 64
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=98.31 E-value=5.6e-06 Score=59.06 Aligned_cols=73 Identities=15% Similarity=0.191 Sum_probs=45.2
Q ss_pred chhhhhhcccCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhchhHH-HHHHHHHHHHHHHHHHhhcccCCCCC
Q psy5073 25 PIPWFMMAEIIPLEAKLWSSSLLMCYSWS-CLFLVSKVFMDLIDTVGSAAT-YGLLGVICTLGAVFVYTRVPETKNKS 100 (115)
Q Consensus 25 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~pet~~~~ 100 (115)
+..+.+.+|.||+|.|++++|+.+..++. .+...|.+...+ +..|+... +...++..++. .+..+. .|+++++
T Consensus 355 ~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~-~~~~~~-l~~~~~~ 429 (432)
T PRK10406 355 SISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVA-FLVSLM-LHRKGKG 429 (432)
T ss_pred HHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHH-HHHHHH-hhhcccc
Confidence 34556789999999999999999988764 355566766644 55553333 33333333333 333333 4445554
No 65
>TIGR00893 2A0114 d-galactonate transporter.
Probab=98.31 E-value=6.6e-06 Score=56.70 Aligned_cols=68 Identities=18% Similarity=0.237 Sum_probs=58.3
Q ss_pred cccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHH
Q psy5073 22 GIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG-SAATYGLLGVICTLGAVFV 89 (115)
Q Consensus 22 ~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 89 (115)
+..+..+.+.+|.+|++.|+++.|+......++..++|.+.+.+.+..+ +++.+.+.++..++..+..
T Consensus 327 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 327 GAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY 395 (399)
T ss_pred hhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence 3567788899999999999999999999999999999999999999888 8888887777666655544
No 66
>PRK11043 putative transporter; Provisional
Probab=98.30 E-value=1.7e-05 Score=55.76 Aligned_cols=70 Identities=16% Similarity=0.024 Sum_probs=56.3
Q ss_pred hhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073 26 IPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPET 96 (115)
Q Consensus 26 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 96 (115)
.....++|.+|++.|.+..+.......++..++|.+.+.+.+..+|++.|.+.+...++..+... ..+|.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~ 183 (401)
T PRK11043 114 IWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTL-RLKPS 183 (401)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH-HcCCC
Confidence 34457889999999999999888888888999999999999999999999888877776655544 34443
No 67
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=98.30 E-value=8.7e-06 Score=59.07 Aligned_cols=76 Identities=16% Similarity=0.037 Sum_probs=53.0
Q ss_pred hhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhhchhHHHHHHHHHHHHHHHHHHh
Q psy5073 20 RIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLI--------DTVGSAATYGLLGVICTLGAVFVYT 91 (115)
Q Consensus 20 ~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (115)
..+..+....+++|.+|++.|++..++......++..+++.+...+. ...||++.|++.+++.++ .++...
T Consensus 132 ~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~-~~~~~~ 210 (490)
T PRK10642 132 VGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII-GLYLRH 210 (490)
T ss_pred hHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH-HHHHHH
Confidence 33444566678999999999999999987766666666665544433 257999999886655443 344455
Q ss_pred hcccC
Q psy5073 92 RVPET 96 (115)
Q Consensus 92 ~~pet 96 (115)
..||+
T Consensus 211 ~~~es 215 (490)
T PRK10642 211 ALEET 215 (490)
T ss_pred cCCCC
Confidence 77886
No 68
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=98.27 E-value=4.1e-06 Score=59.83 Aligned_cols=69 Identities=12% Similarity=0.063 Sum_probs=59.3
Q ss_pred hhhcccCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCC
Q psy5073 29 FMMAEIIPLEAKLWSSSLLMCYSWSCL-FLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETK 97 (115)
Q Consensus 29 ~~~~E~fp~~~R~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 97 (115)
....|.+|++.|+++.|+......+++ .++|.+.+.+.+..|+.+.+.+.....++..+...+.+||.|
T Consensus 368 ~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 368 LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred HHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 356899999999999999988877765 578999999999999988988888888888888888888865
No 69
>PRK15075 citrate-proton symporter; Provisional
Probab=98.26 E-value=9.2e-06 Score=57.98 Aligned_cols=80 Identities=14% Similarity=0.099 Sum_probs=53.2
Q ss_pred cchhhhhhcccCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCCCCHH
Q psy5073 24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWS-CLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSFE 102 (115)
Q Consensus 24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~ 102 (115)
.+..+.+.+|.+|++.|+++.++.+..+.. ++.++|.+.+++.+..|+++....+.+...+......+..++.++..++
T Consensus 349 ~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (434)
T PRK15075 349 NGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDKAAPGYWLSFAAVCGLIATLVLYRRRGARLQ 428 (434)
T ss_pred HhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhccccchhhh
Confidence 344556789999999999999998776664 5888999999999988754332222222233333344566666665554
Q ss_pred H
Q psy5073 103 A 103 (115)
Q Consensus 103 ~ 103 (115)
.
T Consensus 429 ~ 429 (434)
T PRK15075 429 A 429 (434)
T ss_pred h
Confidence 3
No 70
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=98.26 E-value=1.2e-05 Score=57.32 Aligned_cols=74 Identities=16% Similarity=0.091 Sum_probs=51.8
Q ss_pred ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhhchhHHHHHHHHHHHHHHHHHHhhcc
Q psy5073 23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLI--------DTVGSAATYGLLGVICTLGAVFVYTRVP 94 (115)
Q Consensus 23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~p 94 (115)
..+....+++|.+|++.|++..++.......+..+++.+...+. ...|||+.|++.++..++. ++.....|
T Consensus 141 ~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~-~~~~~~~~ 219 (432)
T PRK10406 141 EYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA-LWLRRQLD 219 (432)
T ss_pred hHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH-HHHHhcCC
Confidence 34666779999999999999999877666666666665544433 2579999998776665554 33345567
Q ss_pred cCC
Q psy5073 95 ETK 97 (115)
Q Consensus 95 et~ 97 (115)
|++
T Consensus 220 e~~ 222 (432)
T PRK10406 220 ETS 222 (432)
T ss_pred CCc
Confidence 764
No 71
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=98.26 E-value=1.2e-05 Score=63.46 Aligned_cols=81 Identities=12% Similarity=0.084 Sum_probs=63.4
Q ss_pred HHHHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcc
Q psy5073 15 IVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVP 94 (115)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 94 (115)
..+.......|...+++.|++|.+.|++++|+..+...++..++|.+++++....+|++.| +...+..+..++..+.+|
T Consensus 117 l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 195 (1140)
T PRK06814 117 LMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILV-ALLMGIAVLGWLASLFIP 195 (1140)
T ss_pred HHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHH-HHHHHHHHHHHHHHhhCC
Confidence 3344445567888889999999999999999999999999999999999999999998777 444444444455556666
Q ss_pred cC
Q psy5073 95 ET 96 (115)
Q Consensus 95 et 96 (115)
++
T Consensus 196 ~~ 197 (1140)
T PRK06814 196 KT 197 (1140)
T ss_pred CC
Confidence 65
No 72
>PRK12382 putative transporter; Provisional
Probab=98.26 E-value=2.2e-05 Score=55.04 Aligned_cols=70 Identities=9% Similarity=0.004 Sum_probs=58.8
Q ss_pred cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhc
Q psy5073 24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRV 93 (115)
Q Consensus 24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (115)
.+.......|.+|++.|+++.|+......++..++|.+.+.+.+..||++.|...+.+.++..+...+..
T Consensus 320 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 389 (392)
T PRK12382 320 FPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILSF 389 (392)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhc
Confidence 3445556789999999999999999999999999999999999999999999888887777766655443
No 73
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.25 E-value=1.7e-05 Score=54.85 Aligned_cols=72 Identities=11% Similarity=-0.011 Sum_probs=51.2
Q ss_pred chhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hchhHHH-HHHHHHHHHHHHHHHhhc
Q psy5073 25 PIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT----------VGSAATY-GLLGVICTLGAVFVYTRV 93 (115)
Q Consensus 25 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~-~~~~~~~~~~~~~~~~~~ 93 (115)
+....+++|.+|++.|+++.++......++..+++.+.+.+... .+|++.+ ...+.+..+..++.....
T Consensus 109 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 188 (366)
T TIGR00886 109 ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVG 188 (366)
T ss_pred HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhc
Confidence 34456789999999999999999877777777787777776653 3788888 444555555545545555
Q ss_pred ccC
Q psy5073 94 PET 96 (115)
Q Consensus 94 pet 96 (115)
+|+
T Consensus 189 ~~~ 191 (366)
T TIGR00886 189 ADT 191 (366)
T ss_pred ccC
Confidence 553
No 74
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=98.25 E-value=1e-05 Score=59.13 Aligned_cols=62 Identities=13% Similarity=-0.002 Sum_probs=52.6
Q ss_pred cchhhhhhcccCChh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH
Q psy5073 24 GPIPWFMMAEIIPLE--AKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLG 85 (115)
Q Consensus 24 ~~~~~~~~~E~fp~~--~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (115)
.+....+++|+||++ .|+++.++.++..+++++++|.+.+++.+..||++.|...++.+++.
T Consensus 118 ~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~ 181 (493)
T PRK15462 118 KSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAG 181 (493)
T ss_pred cccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHH
Confidence 354557899999986 79999999999999999999999999999999999998876544443
No 75
>PRK12307 putative sialic acid transporter; Provisional
Probab=98.24 E-value=1.3e-05 Score=56.72 Aligned_cols=75 Identities=16% Similarity=0.129 Sum_probs=52.6
Q ss_pred cccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHH-HHHHHHHHHHHHHHHHhhcccC
Q psy5073 22 GIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAAT-YGLLGVICTLGAVFVYTRVPET 96 (115)
Q Consensus 22 ~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~pet 96 (115)
+..+..+.++.|.+|++.|++++|+......+++.++|.+.+++.+..+.... ++..............+..||+
T Consensus 337 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (426)
T PRK12307 337 GVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTFIVAFWTATILLIIGLSIPDR 412 (426)
T ss_pred cHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhccccCChh
Confidence 33445556789999999999999999999999999999999999988875433 3333222333333333444554
No 76
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=98.24 E-value=1e-05 Score=58.34 Aligned_cols=62 Identities=11% Similarity=0.068 Sum_probs=50.6
Q ss_pred hhhcccCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHH------------hhchhHHHHHHHHHHHHHHHHHH
Q psy5073 29 FMMAEIIPLEAKLWSSSLLMCYSWS-CLFLVSKVFMDLID------------TVGSAATYGLLGVICTLGAVFVY 90 (115)
Q Consensus 29 ~~~~E~fp~~~R~~~~~~~~~~~~~-~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~ 90 (115)
....|.+|++.|+++.|+....+.+ ++++.|.+.+.+.+ ..+|+..|.+..+..++..+...
T Consensus 372 ~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 372 VAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred HHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence 4567999999999999999988886 66899999999999 56788888887666666544433
No 77
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=98.23 E-value=4.3e-05 Score=55.47 Aligned_cols=89 Identities=7% Similarity=-0.115 Sum_probs=61.0
Q ss_pred ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------hhchhHHHHHHHHHHHH
Q psy5073 23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID------------------TVGSAATYGLLGVICTL 84 (115)
Q Consensus 23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~ 84 (115)
..+.....+++.||++.|+++.|+....++++..+.+.+.|.+.. ..+|+...+++.++.++
T Consensus 144 ~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv 223 (462)
T PRK15034 144 NFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAI 223 (462)
T ss_pred hHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHH
Confidence 445555679999999999999999987777777777777766542 23366677778777777
Q ss_pred HHHHHHhhcccCC--CCCHHHHHHHHhcc
Q psy5073 85 GAVFVYTRVPETK--NKSFEAIQAELAMG 111 (115)
Q Consensus 85 ~~~~~~~~~pet~--~~~~~~~~~~~~~~ 111 (115)
..++.++..++.+ ..+.+|..+.+|++
T Consensus 224 ~~i~~~~~~~~~~~~~~~~~~~~~vlk~~ 252 (462)
T PRK15034 224 ATIAAWSGMNDIASSRASIADQLPVLQRL 252 (462)
T ss_pred HHHHHHHhCCCccccccCHHHHHHHhCCC
Confidence 7666666666543 33455555555544
No 78
>PRK03893 putative sialic acid transporter; Provisional
Probab=98.22 E-value=5.1e-06 Score=59.92 Aligned_cols=64 Identities=9% Similarity=-0.069 Sum_probs=51.8
Q ss_pred hhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Q psy5073 20 RIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICT 83 (115)
Q Consensus 20 ~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (115)
+.+..+....+++|.+|++.|++++|+......++..++|.+.+.+.+..|++..+...+....
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~ 443 (496)
T PRK03893 380 GQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLT 443 (496)
T ss_pred hcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHH
Confidence 3344455666789999999999999999999999999999999999999998777655554333
No 79
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.21 E-value=1.7e-05 Score=57.88 Aligned_cols=73 Identities=16% Similarity=0.097 Sum_probs=55.5
Q ss_pred hcccchhhhhhcccCChhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcc
Q psy5073 21 IGIGPIPWFMMAEIIPLEA--KLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVP 94 (115)
Q Consensus 21 ~~~~~~~~~~~~E~fp~~~--R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 94 (115)
....|....+++|+||++. |+++.++.+...+++..++|.+.+++.+..||++.|++..+ ..+..++.+...+
T Consensus 120 g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i-~~~~~~~~~~~~~ 194 (489)
T PRK10207 120 GLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA-GLIIALLVYFACR 194 (489)
T ss_pred ccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH-HHHHHHHHHHHcc
Confidence 3344666778999999884 57889999999999999999999999999999999887544 3333333333333
No 80
>KOG0255|consensus
Probab=98.21 E-value=3.9e-05 Score=56.02 Aligned_cols=80 Identities=11% Similarity=0.101 Sum_probs=64.9
Q ss_pred HHHHHHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhh
Q psy5073 13 CTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTR 92 (115)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (115)
=++.+++..+...+.+.+.+|+++++.|+.+..+ ....+.++...+....++.. +|++.+++..+...+..++ .+.
T Consensus 178 Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l 253 (521)
T KOG0255|consen 178 RFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFL 253 (521)
T ss_pred HHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHc
Confidence 3444566667778888899999999999999999 88888889999999998887 8998988888877766555 455
Q ss_pred cccC
Q psy5073 93 VPET 96 (115)
Q Consensus 93 ~pet 96 (115)
.||.
T Consensus 254 ~~Es 257 (521)
T KOG0255|consen 254 PPES 257 (521)
T ss_pred cCcC
Confidence 5675
No 81
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=98.21 E-value=2.3e-05 Score=53.26 Aligned_cols=72 Identities=21% Similarity=0.108 Sum_probs=61.9
Q ss_pred HHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHH
Q psy5073 18 IFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFV 89 (115)
Q Consensus 18 ~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (115)
.......+....+..|.+|++.|++..|+......++..+++.+.+.+.+..+++..+.+.+++.++..++.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 277 FGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348 (352)
T ss_pred HHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence 444455677778999999999999999999999999999999999999998999988988888777766554
No 82
>KOG2533|consensus
Probab=98.18 E-value=6e-06 Score=60.29 Aligned_cols=87 Identities=10% Similarity=0.087 Sum_probs=74.9
Q ss_pred HHHHHHHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhchhHHHHHHHHHHHHH
Q psy5073 12 VCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID------TVGSAATYGLLGVICTLG 85 (115)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 85 (115)
+=++.+.+-.+..|....+++-.|..++|++-+|+.+..+.+++++++.+...+.+ ..||+|.|.+-+++.++.
T Consensus 140 lr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~ 219 (495)
T KOG2533|consen 140 LRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVL 219 (495)
T ss_pred HHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHH
Confidence 34445566777788888999999999999999999999999999999999888743 468999999999999999
Q ss_pred HHHHHhhcccCCC
Q psy5073 86 AVFVYTRVPETKN 98 (115)
Q Consensus 86 ~~~~~~~~pet~~ 98 (115)
.+++++++|+...
T Consensus 220 gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 220 GIVVFFFLPDNPS 232 (495)
T ss_pred HheEEEEecCChh
Confidence 9999999998533
No 83
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=98.17 E-value=2.5e-05 Score=53.10 Aligned_cols=68 Identities=16% Similarity=0.090 Sum_probs=57.1
Q ss_pred cccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHH
Q psy5073 22 GIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFV 89 (115)
Q Consensus 22 ~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (115)
...+....+.+|.+|+|.|++..++......++..+++.+.+.+.+..+|++.+.+.+...++..+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (352)
T cd06174 103 ALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLL 170 (352)
T ss_pred cccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34466667899999999999999999999999999999999999999899988887777666554443
No 84
>PRK10489 enterobactin exporter EntS; Provisional
Probab=98.16 E-value=5.3e-05 Score=53.67 Aligned_cols=72 Identities=15% Similarity=0.074 Sum_probs=57.0
Q ss_pred chhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCC
Q psy5073 25 PIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETK 97 (115)
Q Consensus 25 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 97 (115)
+.....++|.+|++.|+++.++......++..+++.+.+.+.+..+|++.+.+.+...++..+ ..+.+||++
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~ 200 (417)
T PRK10489 129 TALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLL-PLLRLPALP 200 (417)
T ss_pred HHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHhCCCCC
Confidence 334457889999999999999999888999999999999999988998888776665555443 345667653
No 85
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=98.16 E-value=1.7e-05 Score=54.52 Aligned_cols=62 Identities=8% Similarity=-0.002 Sum_probs=53.0
Q ss_pred cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH
Q psy5073 24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLG 85 (115)
Q Consensus 24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (115)
.+....+.+|.+|++.|++..|+......++..++|.+.+.+.+..||++.|.+.++..++.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 313 ISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred hhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 34445678999999999999999999999999999999999999999988888777655543
No 86
>PRK15075 citrate-proton symporter; Provisional
Probab=98.15 E-value=1.3e-05 Score=57.16 Aligned_cols=56 Identities=13% Similarity=-0.039 Sum_probs=42.5
Q ss_pred chhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhhchhHHHHHHHH
Q psy5073 25 PIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDL--------IDTVGSAATYGLLGV 80 (115)
Q Consensus 25 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~ 80 (115)
+....+++|.+|++.|++++++.....+++..+++.++..+ .+..||++.|++...
T Consensus 136 ~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 136 GGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred HHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 44456899999999999999998877777666666666554 346799988876443
No 87
>PRK15011 sugar efflux transporter B; Provisional
Probab=98.15 E-value=4.3e-05 Score=53.85 Aligned_cols=77 Identities=14% Similarity=0.079 Sum_probs=58.6
Q ss_pred cccchhhhhhcccCChhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCC
Q psy5073 22 GIGPIPWFMMAEIIPLEAKL--WSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKN 98 (115)
Q Consensus 22 ~~~~~~~~~~~E~fp~~~R~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 98 (115)
...|....+..|..|++.|. ...++......++..++|.+...+.+..||+..|...+...++..+...+..||.++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~ 199 (393)
T PRK15011 121 TANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRK 199 (393)
T ss_pred hhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCC
Confidence 34455555667777766664 334677778889999999999999999999999998888777777777777888643
No 88
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=98.14 E-value=2.1e-05 Score=55.27 Aligned_cols=69 Identities=7% Similarity=-0.024 Sum_probs=50.9
Q ss_pred cccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHHH
Q psy5073 22 GIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG-SAATYGLLGVICTLGAVFVY 90 (115)
Q Consensus 22 ~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 90 (115)
+..+....+.+|.+|++.|+++.|+......++..++|.+.+.+.+..+ +...+.......++..+...
T Consensus 324 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 324 GGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred hHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence 3455666788999999999999999999999999999999999988754 33344444444444433333
No 89
>PRK09952 shikimate transporter; Provisional
Probab=98.14 E-value=2.9e-05 Score=55.65 Aligned_cols=73 Identities=15% Similarity=0.052 Sum_probs=51.5
Q ss_pred cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhchhHHHHHHHHHHHHHHHHHHhhccc
Q psy5073 24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID--------TVGSAATYGLLGVICTLGAVFVYTRVPE 95 (115)
Q Consensus 24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~pe 95 (115)
.+....+++|.+|++.|++..+.......++..++..+...+.. ..+||+.|.+.++..++. ++.....||
T Consensus 143 ~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~-~~l~~~~~e 221 (438)
T PRK09952 143 WGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIA-LWVRNGMEE 221 (438)
T ss_pred HHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHH-HHHHHhCCC
Confidence 34555689999999999999988887777777777666655542 468999888776654443 333345677
Q ss_pred CC
Q psy5073 96 TK 97 (115)
Q Consensus 96 t~ 97 (115)
++
T Consensus 222 s~ 223 (438)
T PRK09952 222 SA 223 (438)
T ss_pred Ch
Confidence 54
No 90
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=98.09 E-value=1.2e-05 Score=55.29 Aligned_cols=68 Identities=16% Similarity=0.177 Sum_probs=52.9
Q ss_pred hhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhccc
Q psy5073 27 PWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPE 95 (115)
Q Consensus 27 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe 95 (115)
......|.+| |.|+++.++......++..+.+.+...+.+..+|++.|.+.++..++..+...++.+|
T Consensus 112 ~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 179 (377)
T TIGR00890 112 ALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGY 179 (377)
T ss_pred HHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheec
Confidence 3345678887 5799999999888888777777777777777899999999888887777766666654
No 91
>PRK03699 putative transporter; Provisional
Probab=98.09 E-value=0.0001 Score=52.00 Aligned_cols=65 Identities=8% Similarity=0.065 Sum_probs=51.6
Q ss_pred chhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchhHHHHHHHHHHHHHHHHH
Q psy5073 25 PIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID-TVGSAATYGLLGVICTLGAVFV 89 (115)
Q Consensus 25 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 89 (115)
+....+++|.+|++.|+++.++......+++.+.|.+...+.. ..+|++.|.+.++..++..++.
T Consensus 114 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~ 179 (394)
T PRK03699 114 SIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILT 179 (394)
T ss_pred cchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 4455678999999999999999888878888888888887765 4699999988887766654443
No 92
>KOG1330|consensus
Probab=98.08 E-value=2.4e-07 Score=66.40 Aligned_cols=77 Identities=13% Similarity=-0.015 Sum_probs=67.8
Q ss_pred ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHHHhhcccCCCC
Q psy5073 23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG-SAATYGLLGVICTLGAVFVYTRVPETKNK 99 (115)
Q Consensus 23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pet~~~ 99 (115)
..|....+++|.||.+.|+++.++.+.+..++.+++-..+..+.+..+ |||.|...++++++..++..++.+|++..
T Consensus 138 ~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rg 215 (493)
T KOG1330|consen 138 YSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERG 215 (493)
T ss_pred hcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcccc
Confidence 356667789999999999999999999999999999888888888766 99999999999999999999999887543
No 93
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=98.07 E-value=3.3e-05 Score=55.69 Aligned_cols=68 Identities=15% Similarity=0.062 Sum_probs=55.0
Q ss_pred chhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhc
Q psy5073 25 PIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRV 93 (115)
Q Consensus 25 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (115)
+....++.|.+| +.|+++.|+......++..++|.+.+.+.+..||++.|.+.+++.++..+...+..
T Consensus 127 ~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~ 194 (455)
T TIGR00892 127 QPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMR 194 (455)
T ss_pred hHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhC
Confidence 344456788886 78999999999999999999999999999999999999999887766554444333
No 94
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=98.06 E-value=7.7e-05 Score=52.75 Aligned_cols=79 Identities=15% Similarity=0.187 Sum_probs=57.8
Q ss_pred HHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073 17 AIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPET 96 (115)
Q Consensus 17 ~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 96 (115)
+.......|...++++|++|++.|+++.|+......++..++|.+++.+.+.. |+..+.+.+...++. .+..+.+||.
T Consensus 99 G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~~~~~-~~~~~~l~~~ 176 (393)
T PRK11195 99 GIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALIYLLA-ALFNLFIPRL 176 (393)
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHhcCCCC
Confidence 34444556777789999999999999999999998999999999999998754 555555444433333 3444677775
Q ss_pred C
Q psy5073 97 K 97 (115)
Q Consensus 97 ~ 97 (115)
+
T Consensus 177 ~ 177 (393)
T PRK11195 177 G 177 (393)
T ss_pred c
Confidence 3
No 95
>PRK09528 lacY galactoside permease; Reviewed
Probab=98.06 E-value=2.7e-05 Score=55.24 Aligned_cols=70 Identities=14% Similarity=0.086 Sum_probs=55.6
Q ss_pred hhhhhcccCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073 27 PWFMMAEIIPLEAKLWSSSL-LMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPET 96 (115)
Q Consensus 27 ~~~~~~E~fp~~~R~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 96 (115)
...+++|.+|++.|++..+. ......++..+++.+.+++.+..||+..|...+.+.++..++..+..++.
T Consensus 336 ~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~ 406 (420)
T PRK09528 336 VFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGD 406 (420)
T ss_pred HHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33567899999999988766 34556788999999999999999999999988888777776666666553
No 96
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=98.05 E-value=6e-05 Score=53.68 Aligned_cols=71 Identities=11% Similarity=-0.004 Sum_probs=60.4
Q ss_pred cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---hhHHHHHHHHHHHHHHHHHHhhccc
Q psy5073 24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG---SAATYGLLGVICTLGAVFVYTRVPE 95 (115)
Q Consensus 24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~pe 95 (115)
..+...++++.||+|.+++++|+.. .++++..+...+.|.++...+ |+.+-.++.+..++..+...+...|
T Consensus 122 Fav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d 195 (417)
T COG2223 122 FAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMND 195 (417)
T ss_pred ehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3444457899999999999999999 889999999999999999999 8888888888888777776666644
No 97
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=98.03 E-value=7.6e-05 Score=51.62 Aligned_cols=73 Identities=16% Similarity=0.118 Sum_probs=52.1
Q ss_pred cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhhchhHHHHHHHHHHHHHHHHHHhhccc
Q psy5073 24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLI--------DTVGSAATYGLLGVICTLGAVFVYTRVPE 95 (115)
Q Consensus 24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~pe 95 (115)
.+....+++|.+|++.|++..++......++..+++.+...+. +..+|++.|.+.+...++. .+.....||
T Consensus 114 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~-~~~~~~~~~ 192 (394)
T TIGR00883 114 WGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIG-LYLRRNLEE 192 (394)
T ss_pred ccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHH-HHHHHhcCC
Confidence 3455568999999999999999998888888888887766554 2457888887766554443 333345566
Q ss_pred CC
Q psy5073 96 TK 97 (115)
Q Consensus 96 t~ 97 (115)
++
T Consensus 193 ~~ 194 (394)
T TIGR00883 193 TP 194 (394)
T ss_pred Ch
Confidence 43
No 98
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=98.02 E-value=0.00012 Score=51.76 Aligned_cols=77 Identities=6% Similarity=-0.083 Sum_probs=60.0
Q ss_pred cchhhhhhcccC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q psy5073 24 GPIPWFMMAEII-PLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG-SAATYGLLGVICTLGAVFVYTRVPETKNKS 100 (115)
Q Consensus 24 ~~~~~~~~~E~f-p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pet~~~~ 100 (115)
.+.......|.+ |++.|++..|+....+.++..++|.+.+++.+..| +...|.+..+.+++.........|||+++.
T Consensus 310 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK09705 310 FPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQL 388 (393)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccch
Confidence 344444556777 57899999999999999999999999999999876 555566666666777667677889988764
No 99
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=98.02 E-value=1.1e-05 Score=58.18 Aligned_cols=75 Identities=7% Similarity=-0.113 Sum_probs=57.3
Q ss_pred hcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---chhHHHHHHHHHHHHHHHHHHhhccc
Q psy5073 21 IGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV---GSAATYGLLGVICTLGAVFVYTRVPE 95 (115)
Q Consensus 21 ~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~pe 95 (115)
....|....+++|.+|++.|++++|+......++..+++.+..++.... +|+..|.+.+++.++..++.+++.++
T Consensus 137 ~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~ 214 (467)
T PRK09556 137 STGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSD 214 (467)
T ss_pred hccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCC
Confidence 3345666678999999999999999998888888888888877766653 58877887777776666655555544
No 100
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.02 E-value=0.00012 Score=53.53 Aligned_cols=62 Identities=10% Similarity=-0.066 Sum_probs=50.0
Q ss_pred ccchhhhhhcccCChhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Q psy5073 23 IGPIPWFMMAEIIPLEA--KLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTL 84 (115)
Q Consensus 23 ~~~~~~~~~~E~fp~~~--R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (115)
..+....+++|+||++. |..+.++.+...+++..++|.+.+++.+..||++.|.+.++...+
T Consensus 129 ~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i 192 (500)
T PRK09584 129 FKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLI 192 (500)
T ss_pred ccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence 34566678999998653 456788888999999999999999999999999999887754444
No 101
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=98.01 E-value=6.1e-05 Score=56.67 Aligned_cols=78 Identities=9% Similarity=-0.053 Sum_probs=57.0
Q ss_pred HHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------------------chhHHH
Q psy5073 18 IFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV----------------------GSAATY 75 (115)
Q Consensus 18 ~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~ 75 (115)
+......+....++.|.+|++.|+...|+......++..+++.+++.+.+.. .|+..|
T Consensus 184 iG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~F 263 (633)
T TIGR00805 184 IGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGF 263 (633)
T ss_pred ccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHH
Confidence 3333444566679999999999999999999999999999999998887642 144456
Q ss_pred HHHHHHHHHHHHHHHhhcccC
Q psy5073 76 GLLGVICTLGAVFVYTRVPET 96 (115)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~pet 96 (115)
.+.+++.++..+. .+..|++
T Consensus 264 li~g~l~~l~~v~-l~~~p~~ 283 (633)
T TIGR00805 264 LICGGVALLTSIP-FFFFPKA 283 (633)
T ss_pred HHHHHHHHHHHHH-HHhCccc
Confidence 6666666665544 3455654
No 102
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=97.99 E-value=1.1e-05 Score=58.20 Aligned_cols=65 Identities=9% Similarity=0.156 Sum_probs=53.2
Q ss_pred ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-chhHHHHHHHHHHHHHHH
Q psy5073 23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV-GSAATYGLLGVICTLGAV 87 (115)
Q Consensus 23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 87 (115)
..+.....+.|.+|++.|++++|+......++..++|.+.+.+.+.. +|++.|.+.+++.++..+
T Consensus 350 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 350 VGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 34555677889999999999999999999999999999999998876 487788777766555444
No 103
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=97.99 E-value=0.00011 Score=57.96 Aligned_cols=80 Identities=16% Similarity=0.257 Sum_probs=55.7
Q ss_pred HHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------h-chhHHHHHHHHHHHHHHHH
Q psy5073 18 IFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT--------V-GSAATYGLLGVICTLGAVF 88 (115)
Q Consensus 18 ~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~~ 88 (115)
+......+....+++|++|.+.|++++|+......++..+++.+++++... . +|.+.+.+..+...+..++
T Consensus 115 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (1146)
T PRK08633 115 AQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLI 194 (1146)
T ss_pred HHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHH
Confidence 333445566677899999999999999999999999999999999998876 2 2333333333333333344
Q ss_pred HHhhcccCC
Q psy5073 89 VYTRVPETK 97 (115)
Q Consensus 89 ~~~~~pet~ 97 (115)
..+..||++
T Consensus 195 ~~~~~~~~~ 203 (1146)
T PRK08633 195 FAYRLPKVP 203 (1146)
T ss_pred HHhcCcCCC
Confidence 445567653
No 104
>PRK03545 putative arabinose transporter; Provisional
Probab=97.98 E-value=0.00016 Score=50.76 Aligned_cols=71 Identities=10% Similarity=-0.066 Sum_probs=57.8
Q ss_pred ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcc
Q psy5073 23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVP 94 (115)
Q Consensus 23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 94 (115)
.++.....+.|..| +.|++++|+......++..++|.+.+.+.+..|++.+|...+.+.++..++..+..+
T Consensus 311 ~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 311 IGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred chHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHcc
Confidence 34445556778776 689999999999899999999999999999999998998888877777776665554
No 105
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=97.96 E-value=5.3e-05 Score=53.18 Aligned_cols=72 Identities=8% Similarity=-0.063 Sum_probs=60.0
Q ss_pred cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhccc
Q psy5073 24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPE 95 (115)
Q Consensus 24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe 95 (115)
.+.....+.|..|++.|++..++......++..++|.+.+.+.+..++++.|.+.+++.++..++..+..++
T Consensus 329 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~ 400 (408)
T PRK09874 329 LPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSLRR 400 (408)
T ss_pred HHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445667889999999999999999999999999999999999999999999988888877776655544
No 106
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=97.93 E-value=0.00013 Score=53.08 Aligned_cols=63 Identities=13% Similarity=0.075 Sum_probs=52.7
Q ss_pred ccchhhhhhcccCChhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH
Q psy5073 23 IGPIPWFMMAEIIPLEA---KLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLG 85 (115)
Q Consensus 23 ~~~~~~~~~~E~fp~~~---R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (115)
..|....+++|.+|++. |+++.++.+...+++..++|.+.+++.+..+|++.|...++..++.
T Consensus 119 ~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~ 184 (475)
T TIGR00924 119 FKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIG 184 (475)
T ss_pred ccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 34566678899998865 8899999999999999999999999999899999988877544444
No 107
>PRK15011 sugar efflux transporter B; Provisional
Probab=97.93 E-value=0.00015 Score=51.12 Aligned_cols=68 Identities=10% Similarity=0.101 Sum_probs=53.5
Q ss_pred hhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073 27 PWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPET 96 (115)
Q Consensus 27 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 96 (115)
...+..|.+|.+ |++++++......++..+++.+.+.+.+..+|+..+.+..+..++. .+..+..||+
T Consensus 326 ~~~~~~~~~p~~-~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~ 393 (393)
T PRK15011 326 GMLYFQDLMPGQ-AGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIAT-LFCLLRIKDV 393 (393)
T ss_pred HHHHHHHhCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HHHHHhhcCC
Confidence 345678999865 9999999988889999999999999999889988887766655554 4445566764
No 108
>PRK12382 putative transporter; Provisional
Probab=97.92 E-value=0.00014 Score=51.04 Aligned_cols=57 Identities=12% Similarity=-0.171 Sum_probs=46.2
Q ss_pred chhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q psy5073 25 PIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVI 81 (115)
Q Consensus 25 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (115)
+....++.|.+|++.|++++|+.......+..++|.+.+.+.+..+|++.+.+....
T Consensus 131 ~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~ 187 (392)
T PRK12382 131 TGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVL 187 (392)
T ss_pred HHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 334456789999999999999998888888889999999998888998766554443
No 109
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=97.91 E-value=0.00023 Score=50.31 Aligned_cols=62 Identities=8% Similarity=-0.107 Sum_probs=48.7
Q ss_pred ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-chhHHHHHHHHHHHHH
Q psy5073 23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV-GSAATYGLLGVICTLG 85 (115)
Q Consensus 23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 85 (115)
..+....++.|.+| +.|++++|+.......+..+++.+.+.+.+.. +|++.+.++++..++.
T Consensus 114 ~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~ 176 (393)
T PRK09705 114 IQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVA 176 (393)
T ss_pred HhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 34445567889998 78999999999888889999999999988875 8998877766554443
No 110
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=97.89 E-value=0.00011 Score=51.91 Aligned_cols=67 Identities=9% Similarity=-0.101 Sum_probs=44.7
Q ss_pred hhhcccCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhccc
Q psy5073 29 FMMAEIIPLEAKLWSSSLLMCYSWSCL-FLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPE 95 (115)
Q Consensus 29 ~~~~E~fp~~~R~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe 95 (115)
..+.|.+|++.|++++|+......++. ..++.+...+.+..||+..++.......+..++..+..+|
T Consensus 128 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (402)
T TIGR00897 128 VWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKD 195 (402)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccCC
Confidence 457799999999999999998888775 4678888887777786544443333333333333334443
No 111
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=97.89 E-value=0.00026 Score=50.58 Aligned_cols=72 Identities=15% Similarity=0.048 Sum_probs=53.9
Q ss_pred hhhhhhcccCChhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhchhH------HHHHHHHHHHHHHHHHHhhcccCC
Q psy5073 26 IPWFMMAEIIPLEAKLWSSSLLMCYS-WSCLFLVSKVFMDLIDTVGSAA------TYGLLGVICTLGAVFVYTRVPETK 97 (115)
Q Consensus 26 ~~~~~~~E~fp~~~R~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~pet~ 97 (115)
....++.|..|++.|++++++..... .++..++..+++++.+..|.+. .+.+.+++.++..++..++.+|++
T Consensus 321 a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~~ 399 (400)
T PF03825_consen 321 ASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPKH 399 (400)
T ss_pred HHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 34468999999999999999987765 6899999999999999876543 345555555555555556666654
No 112
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=97.86 E-value=0.00017 Score=49.73 Aligned_cols=75 Identities=16% Similarity=0.104 Sum_probs=54.9
Q ss_pred chhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------hchhHHHHHHHHHHHHHHH-
Q psy5073 25 PIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT----------------VGSAATYGLLGVICTLGAV- 87 (115)
Q Consensus 25 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~- 87 (115)
+....+++++.|+|.+++.+++....+.++..++|.+...+... ..|++.|.+.+.+..+..+
T Consensus 29 ~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~yl~ia~~~~~~~i~ 108 (310)
T TIGR01272 29 VAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAAKVHTPYLLLAGALAVLAII 108 (310)
T ss_pred hhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455889999999999999999999999999999999988742 3577777756554444333
Q ss_pred HHHhhcccCCCC
Q psy5073 88 FVYTRVPETKNK 99 (115)
Q Consensus 88 ~~~~~~pet~~~ 99 (115)
+.....||.+++
T Consensus 109 ~~~~~~p~~~~~ 120 (310)
T TIGR01272 109 FAFLPLPELQEA 120 (310)
T ss_pred HHHccCCCCCcc
Confidence 334456775443
No 113
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=97.85 E-value=3.4e-05 Score=57.56 Aligned_cols=74 Identities=7% Similarity=0.096 Sum_probs=51.8
Q ss_pred ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHh-hcccC
Q psy5073 23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYT-RVPET 96 (115)
Q Consensus 23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~pet 96 (115)
...+....++|+.|.|.|..+.++...........++.+...+....+|||.|++..++..+..+..++ +.|.+
T Consensus 147 ~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~ 221 (599)
T PF06609_consen 147 VQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPPP 221 (599)
T ss_pred HHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 334555568999999999988877765544444456666666655679999999998887777665443 34443
No 114
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=97.84 E-value=0.00029 Score=49.52 Aligned_cols=62 Identities=15% Similarity=-0.058 Sum_probs=49.6
Q ss_pred cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH
Q psy5073 24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLG 85 (115)
Q Consensus 24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (115)
.+....+..|.+|.+.|+++.++......++..+++.+...+.+..+|++.+.+..+..++.
T Consensus 130 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~ 191 (399)
T PRK05122 130 GTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLG 191 (399)
T ss_pred cchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 34444567899999999999999888888888899999999999999988777665554433
No 115
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=97.79 E-value=0.00035 Score=48.41 Aligned_cols=69 Identities=12% Similarity=0.047 Sum_probs=54.0
Q ss_pred cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcc
Q psy5073 24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVP 94 (115)
Q Consensus 24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 94 (115)
.+....+..|.+|.+ |+++.++......++..++|.+.+.+.+..|++..|.+.++..++..+.. ...+
T Consensus 306 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~ 374 (375)
T TIGR00899 306 AGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCL-LLIK 374 (375)
T ss_pred HHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH-heec
Confidence 345556788998875 56999999999999999999999999999999888888777666665543 3444
No 116
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=97.77 E-value=0.00019 Score=50.05 Aligned_cols=57 Identities=12% Similarity=-0.046 Sum_probs=47.5
Q ss_pred hhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hhHHHH
Q psy5073 20 RIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG-SAATYG 76 (115)
Q Consensus 20 ~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 76 (115)
..+..+....+++|.+|++.|++++|+......++..++|.+.+.+.+..| ++..+.
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~ 399 (405)
T TIGR00891 342 VQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALA 399 (405)
T ss_pred HccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHH
Confidence 334455666788999999999999999999999999999999999999888 654433
No 117
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=97.76 E-value=0.00083 Score=47.96 Aligned_cols=67 Identities=15% Similarity=0.159 Sum_probs=51.6
Q ss_pred hhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------------------hchhHHHHHHHHHH
Q psy5073 29 FMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT--------------------------VGSAATYGLLGVIC 82 (115)
Q Consensus 29 ~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~ 82 (115)
.++.|..|++.|++.+++......++..+++.+.+.+... .+|++.|.+.+.+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~ 196 (410)
T TIGR00885 117 PYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVV 196 (410)
T ss_pred HHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999998877532 35888888887766
Q ss_pred HHHHHHHH-hhccc
Q psy5073 83 TLGAVFVY-TRVPE 95 (115)
Q Consensus 83 ~~~~~~~~-~~~pe 95 (115)
++..++.. ...||
T Consensus 197 ~~~~~~~~~~~~p~ 210 (410)
T TIGR00885 197 LAVALLIMLTKMPA 210 (410)
T ss_pred HHHHHHHHHhcCCC
Confidence 66544433 33565
No 118
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=97.75 E-value=8.8e-05 Score=51.05 Aligned_cols=53 Identities=17% Similarity=0.135 Sum_probs=45.9
Q ss_pred cccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHH
Q psy5073 22 GIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAAT 74 (115)
Q Consensus 22 ~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (115)
+..+..+.+..|.+|++.|+++.|+......++..++|.+.+.+.+..||++.
T Consensus 326 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 378 (379)
T TIGR00881 326 GPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGA 378 (379)
T ss_pred hhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccccc
Confidence 34444556789999999999999999999999999999999999999888754
No 119
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=97.74 E-value=0.0016 Score=45.75 Aligned_cols=72 Identities=13% Similarity=-0.045 Sum_probs=54.9
Q ss_pred cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhccc
Q psy5073 24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPE 95 (115)
Q Consensus 24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe 95 (115)
-+..-.+..|..+.+.|+...+.......++..+++....++.+..+|+..|++.+.+.++..+...+..||
T Consensus 115 d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~ 186 (390)
T TIGR02718 115 DIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDR 186 (390)
T ss_pred HHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 344444567888888888888777777788888888888888999999999999988877766665444444
No 120
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=97.72 E-value=0.00068 Score=49.64 Aligned_cols=69 Identities=13% Similarity=-0.016 Sum_probs=52.6
Q ss_pred hhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHH--HHHHHHHHHHHhhccc
Q psy5073 26 IPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLG--VICTLGAVFVYTRVPE 95 (115)
Q Consensus 26 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~pe 95 (115)
....++...+|+++|+++.|+......++..+++.+.+. ....||++..-+.. .......+++.+++|.
T Consensus 134 A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~ 204 (511)
T TIGR00806 134 AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFSVFLALFLKR 204 (511)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 445589999999999999999999999999999999999 56789987544332 2233334455567773
No 121
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=97.72 E-value=0.00089 Score=47.51 Aligned_cols=72 Identities=14% Similarity=0.109 Sum_probs=53.8
Q ss_pred hhhhhhcccC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhchhHHHHHHHHHHHHHHHHHHhhcccCC
Q psy5073 26 IPWFMMAEII-PLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID-------TVGSAATYGLLGVICTLGAVFVYTRVPETK 97 (115)
Q Consensus 26 ~~~~~~~E~f-p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 97 (115)
...++.+|+. ++++|++..++-.....++..+.+.+.+.+.. ..+|++.+.+.+++..+..++..+..||++
T Consensus 119 ~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~ 198 (437)
T TIGR00792 119 PYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERY 198 (437)
T ss_pred cHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecC
Confidence 3445678887 57899999998887777777777666655553 347888888888888777777777788764
No 122
>PTZ00207 hypothetical protein; Provisional
Probab=97.70 E-value=0.0012 Score=49.49 Aligned_cols=69 Identities=4% Similarity=0.044 Sum_probs=51.5
Q ss_pred hhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073 26 IPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPET 96 (115)
Q Consensus 26 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 96 (115)
.....+.+.|| +.|++++|+......+++.+.+.+...+.. .+|++.|++.+++.++..++...++++.
T Consensus 140 ~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~vv~ll~~~~vr~p 208 (591)
T PTZ00207 140 GAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFALVVGILAIVFMRLP 208 (591)
T ss_pred HHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHhheeCC
Confidence 34456788997 789999999999998888766666555544 4677788888888888777777666554
No 123
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=97.67 E-value=0.0011 Score=47.04 Aligned_cols=86 Identities=15% Similarity=0.084 Sum_probs=56.2
Q ss_pred cchhhhhhcccCC-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh--------------HHHHHHHHHH
Q psy5073 24 GPIPWFMMAEIIP-------LEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSA--------------ATYGLLGVIC 82 (115)
Q Consensus 24 ~~~~~~~~~E~fp-------~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~ 82 (115)
.+..+.+++|..| .+.+++..|+......++..+++.+.+.+.+..|+. +.+.+..++.
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~~~~~~~~~~~~~~~~~~~~~p~i~ 408 (437)
T TIGR00792 329 TGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYVANAAQSPITLNGIKILMFAVPALF 408 (437)
T ss_pred HHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcCCHHHHHHHHHHHHHHHHHH
Confidence 4566677888865 566788899999999999999999999998876542 2333333344
Q ss_pred HHHHHHHHh-hcccCCCCCHHHHHHHHhc
Q psy5073 83 TLGAVFVYT-RVPETKNKSFEAIQAELAM 110 (115)
Q Consensus 83 ~~~~~~~~~-~~pet~~~~~~~~~~~~~~ 110 (115)
.+..++... ..|.++++ .+|++++.++
T Consensus 409 ~~~~~~~~~~~y~l~~~~-~~~i~~~l~~ 436 (437)
T TIGR00792 409 LLLAAIIIGRFYKLTEKK-HAEIVEELEQ 436 (437)
T ss_pred HHHHHHHHHHHeeCcHHH-HHHHHHHHhc
Confidence 444444443 66666544 3455555543
No 124
>PRK03633 putative MFS family transporter protein; Provisional
Probab=97.63 E-value=0.0012 Score=46.25 Aligned_cols=68 Identities=7% Similarity=0.038 Sum_probs=53.5
Q ss_pred ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH
Q psy5073 23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVY 90 (115)
Q Consensus 23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (115)
..|.......|..|++.++...+.......++..++|.+.+++.+..++++.|.+.+.+.++..+..+
T Consensus 302 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~ 369 (381)
T PRK03633 302 LYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLL 369 (381)
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 34666667789999988888878777778899999999999999999998888887776665544433
No 125
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=97.61 E-value=0.0013 Score=46.26 Aligned_cols=72 Identities=10% Similarity=-0.041 Sum_probs=51.8
Q ss_pred cccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073 22 GIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPET 96 (115)
Q Consensus 22 ~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 96 (115)
...|...++..+. .+.|+++.+.....+.++..++|.+.+.+.+..||+..|+..++..++.. +..+..||+
T Consensus 110 ~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~-~~~~~~~~~ 181 (382)
T PRK11128 110 PLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASML-LGQLLRPTI 181 (382)
T ss_pred ccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH-HHHHccCCC
Confidence 3455555555554 45688888888888899999999999999999999988887765444433 333445654
No 126
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=97.59 E-value=0.0014 Score=46.46 Aligned_cols=61 Identities=15% Similarity=0.167 Sum_probs=50.4
Q ss_pred hhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH
Q psy5073 29 FMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVY 90 (115)
Q Consensus 29 ~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (115)
...+|..| +.|+++.|+......++..++|.+.+.+.+..|+...+++.++..++..++..
T Consensus 338 ~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~ 398 (402)
T TIGR00897 338 AVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTA 398 (402)
T ss_pred HHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 34677655 58999999999999999999999999999999988888888877666655543
No 127
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=97.58 E-value=0.00022 Score=49.34 Aligned_cols=56 Identities=16% Similarity=0.005 Sum_probs=43.3
Q ss_pred ccchhhhhhcccCChhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhc-hhHHHHHH
Q psy5073 23 IGPIPWFMMAEIIPLEAKLWSSSLLMCY-SWSCLFLVSKVFMDLIDTVG-SAATYGLL 78 (115)
Q Consensus 23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 78 (115)
..+....+++|.+|++.|+++.++.+.. ..++..++|.+.+.+.+..+ |+..++..
T Consensus 329 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~ 386 (394)
T TIGR00883 329 YTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYL 386 (394)
T ss_pred HhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHH
Confidence 3455667899999999999999986555 45677799999999999887 65544443
No 128
>KOG2615|consensus
Probab=97.55 E-value=0.00018 Score=51.08 Aligned_cols=72 Identities=18% Similarity=0.056 Sum_probs=51.4
Q ss_pred chhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhchhHHHH--HHHHH-HHHHHHHHHhhcccC
Q psy5073 25 PIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID---TVGSAATYG--LLGVI-CTLGAVFVYTRVPET 96 (115)
Q Consensus 25 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~-~~~~~~~~~~~~pet 96 (115)
++.-++++|+++.|.|+.+++.......++..++|.+++++.. ..|-.+.+. ++..+ .........+++|||
T Consensus 139 ~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpET 216 (451)
T KOG2615|consen 139 SVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPET 216 (451)
T ss_pred HHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 4455789999999999999999999999999999999999987 334222222 11112 222234556788998
No 129
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=97.54 E-value=0.0024 Score=44.28 Aligned_cols=57 Identities=7% Similarity=-0.063 Sum_probs=43.6
Q ss_pred hhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--chhHHHHHHHHHHH
Q psy5073 26 IPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV--GSAATYGLLGVICT 83 (115)
Q Consensus 26 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 83 (115)
.....+.|.+| +.|+++.++......++..+++.+.+.+.+.. +|++.|...+...+
T Consensus 107 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~ 165 (355)
T TIGR00896 107 LLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPAL 165 (355)
T ss_pred cchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 33446788886 68999999999888899999999988887764 38877776655443
No 130
>PRK09669 putative symporter YagG; Provisional
Probab=97.53 E-value=0.0044 Score=44.48 Aligned_cols=74 Identities=16% Similarity=0.100 Sum_probs=50.9
Q ss_pred ccchhhhhhcccC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hchhHHHHHHHHHHHHHHHHHHhhcc
Q psy5073 23 IGPIPWFMMAEII-PLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT-------VGSAATYGLLGVICTLGAVFVYTRVP 94 (115)
Q Consensus 23 ~~~~~~~~~~E~f-p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~p 94 (115)
......++.+|+. ++++|.+..++-.....++..+.+.+...+... .+|+..+.+++++..+..+...+..+
T Consensus 126 ~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~ 205 (444)
T PRK09669 126 INVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTK 205 (444)
T ss_pred hcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeE
Confidence 4445557889998 678899988888888777777777665555443 34555667777666666666666666
Q ss_pred cC
Q psy5073 95 ET 96 (115)
Q Consensus 95 et 96 (115)
|.
T Consensus 206 e~ 207 (444)
T PRK09669 206 ER 207 (444)
T ss_pred Ee
Confidence 64
No 131
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=97.53 E-value=0.0015 Score=47.63 Aligned_cols=73 Identities=16% Similarity=0.097 Sum_probs=58.3
Q ss_pred cccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcc
Q psy5073 22 GIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVP 94 (115)
Q Consensus 22 ~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 94 (115)
...|....+++|..|++.|++.+|+......++..+++.+........+|.+.|...++..++..++..+..|
T Consensus 397 ~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 397 MISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred HHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3457777889999999999999999999988988888888887766667877787777777766666555444
No 132
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=97.50 E-value=0.0018 Score=47.39 Aligned_cols=80 Identities=9% Similarity=-0.008 Sum_probs=55.3
Q ss_pred HHHhhcccchhhhhhcccCChhhHH--HHHHHHHHHHHHHHHHHHHHHHHH--HHhh-------------chhHHHHHHH
Q psy5073 17 AIFRIGIGPIPWFMMAEIIPLEAKL--WSSSLLMCYSWSCLFLVSKVFMDL--IDTV-------------GSAATYGLLG 79 (115)
Q Consensus 17 ~~~~~~~~~~~~~~~~E~fp~~~R~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-------------~~~~~~~~~~ 79 (115)
+..+....| ..++++|++|++.|. .+.++......+++.+++.++... .+.. +.+..|.+-+
T Consensus 126 ~~~n~~~~p-~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a 204 (477)
T TIGR01301 126 VANNMLQGP-CRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDI 204 (477)
T ss_pred HHHHHHHHH-HHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHH
Confidence 344433334 457899999999774 577777777778787777776654 2211 4456788877
Q ss_pred HHHHHHHHHHHhhcccCC
Q psy5073 80 VICTLGAVFVYTRVPETK 97 (115)
Q Consensus 80 ~~~~~~~~~~~~~~pet~ 97 (115)
+..++..++..+..||..
T Consensus 205 ~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 205 ILLAILTYIALSAVKENP 222 (477)
T ss_pred HHHHHHHHHHeeeeeccC
Confidence 777788788888888864
No 133
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=97.50 E-value=0.00098 Score=48.75 Aligned_cols=86 Identities=17% Similarity=0.214 Sum_probs=65.4
Q ss_pred HHHHHHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHHHh
Q psy5073 13 CTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG-SAATYGLLGVICTLGAVFVYT 91 (115)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 91 (115)
.++.+.+.++..+..-++.+|+.|++..+.-.|+....+...+.++|.+.+.+.+..| .|+.+....++.++..++ ..
T Consensus 387 a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~l-l~ 465 (477)
T PF11700_consen 387 AVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLIL-LF 465 (477)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH-Hh
Confidence 3344455555667777899999999999999999999999999999999999999876 555666555555555444 45
Q ss_pred hcccCCCC
Q psy5073 92 RVPETKNK 99 (115)
Q Consensus 92 ~~pet~~~ 99 (115)
..++.|++
T Consensus 466 ~v~~~~g~ 473 (477)
T PF11700_consen 466 FVDVEKGR 473 (477)
T ss_pred hccchhhh
Confidence 66665554
No 134
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=97.47 E-value=0.0014 Score=48.44 Aligned_cols=73 Identities=14% Similarity=0.034 Sum_probs=59.1
Q ss_pred HHHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHH
Q psy5073 16 VAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVF 88 (115)
Q Consensus 16 ~~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (115)
......-..|...++++|+.|.+....+.++.....++...++|.+++.++...|..+.|.+.++..++....
T Consensus 113 ~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~ 185 (524)
T PF05977_consen 113 LGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILA 185 (524)
T ss_pred HHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444567777899999999999999999999999999999999999999989888888777655544333
No 135
>PRK11010 ampG muropeptide transporter; Validated
Probab=97.44 E-value=0.0013 Score=47.98 Aligned_cols=70 Identities=13% Similarity=0.003 Sum_probs=56.2
Q ss_pred hhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073 26 IPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPET 96 (115)
Q Consensus 26 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 96 (115)
..+.+..|+.|.+.+++..++......++..+.+.+.+++.+..||+..|.+..+..+...+... .++++
T Consensus 336 ~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~-~~~~~ 405 (491)
T PRK11010 336 AFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLL-VCRQT 405 (491)
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH-HHHhc
Confidence 34567889999999999999999999999888999999999999998777777777666655544 44543
No 136
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=97.43 E-value=0.0022 Score=45.05 Aligned_cols=57 Identities=12% Similarity=-0.032 Sum_probs=46.2
Q ss_pred ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q psy5073 23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVI 81 (115)
Q Consensus 23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (115)
..|....+..| +.+.|++..|.......++..++|.+.+.+.+..||+..|......
T Consensus 111 ~~p~~~al~~~--~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~ 167 (382)
T TIGR00902 111 GMPIGDALANT--WQKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAG 167 (382)
T ss_pred chhHHHHHHHH--HHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence 45555555544 2578899999999999999999999999999999999988776554
No 137
>KOG0254|consensus
Probab=97.42 E-value=0.0029 Score=46.40 Aligned_cols=70 Identities=19% Similarity=0.086 Sum_probs=53.0
Q ss_pred chhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--chhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073 25 PIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV--GSAATYGLLGVICTLGAVFVYTRVPET 96 (115)
Q Consensus 25 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~pet 96 (115)
.+...+++|+-|++.|+.-.+.......++..++ ++......+. +|+..+.+..+.+++..+. .++.||+
T Consensus 161 ~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pes 232 (513)
T KOG0254|consen 161 VLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPES 232 (513)
T ss_pred hcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCC
Confidence 3445689999999999999999988877544444 5555555553 8997777777777777666 7888986
No 138
>PRK11462 putative transporter; Provisional
Probab=97.38 E-value=0.0062 Score=44.18 Aligned_cols=83 Identities=12% Similarity=0.140 Sum_probs=55.8
Q ss_pred HHHHHHHhhcccchhhhhhcccCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------chhHHHHHHHHHHHH
Q psy5073 13 CTIVAIFRIGIGPIPWFMMAEIIP-LEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV-------GSAATYGLLGVICTL 84 (115)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~E~fp-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 84 (115)
.++...+... .....++.+|+.+ +|+|.+..++-...+.++..+.+.+...+.+.. +|.....+++++.++
T Consensus 117 ~~~~~~~t~~-~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i 195 (460)
T PRK11462 117 TLLTLLYTVV-NIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFM 195 (460)
T ss_pred HHHHHHHHHH-hccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHH
Confidence 3344444443 3445568899996 999999999999888888888877776665543 355555666666555
Q ss_pred HHHHHHhhcccC
Q psy5073 85 GAVFVYTRVPET 96 (115)
Q Consensus 85 ~~~~~~~~~pet 96 (115)
...+.+...+|.
T Consensus 196 ~~~i~~~~~kE~ 207 (460)
T PRK11462 196 MLAFCFFTTKER 207 (460)
T ss_pred HHHHHHhcceec
Confidence 555555556664
No 139
>PF13347 MFS_2: MFS/sugar transport protein
Probab=97.35 E-value=0.0019 Score=46.15 Aligned_cols=86 Identities=15% Similarity=0.038 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhhcccchhhhhhcccCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------chhHHHHHHHH
Q psy5073 9 IFSVCTIVAIFRIGIGPIPWFMMAEIIP-LEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV-------GSAATYGLLGV 80 (115)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~E~fp-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 80 (115)
.+...++...++.. .....++.+|+.+ +++|.+..+.-.....++..+...+.+.+.+.. +|++...+.++
T Consensus 107 ~~~~~l~~~~~t~~-~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~i 185 (428)
T PF13347_consen 107 FVFYILFDIAYTFV-QIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAI 185 (428)
T ss_pred HHHHHHHHHhhhhc-cCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHH
Confidence 33344444455544 3344578999997 579999999998888887777777777766543 47777888888
Q ss_pred HHHHHHHHHHhhccc
Q psy5073 81 ICTLGAVFVYTRVPE 95 (115)
Q Consensus 81 ~~~~~~~~~~~~~pe 95 (115)
+.++..++..+..+|
T Consensus 186 v~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 186 VGLVFFLITFFFVKE 200 (428)
T ss_pred HHHHHhhhhhheeee
Confidence 888888888888888
No 140
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=97.33 E-value=0.0028 Score=46.94 Aligned_cols=76 Identities=13% Similarity=0.037 Sum_probs=57.6
Q ss_pred ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH-hhcccCCC
Q psy5073 23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVY-TRVPETKN 98 (115)
Q Consensus 23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pet~~ 98 (115)
......+.+-+..|.+.|++..|+..+....+..++..+.+.+.+..|.+..+.+.++..++..++.. ..+|+.++
T Consensus 324 ~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~~~l~~~~~ 400 (524)
T PF05977_consen 324 ANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALRFPLRQGEE 400 (524)
T ss_pred HHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 33444566789999999999999999999999999999999999999988887776665554444433 23454433
No 141
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=97.32 E-value=0.00072 Score=48.15 Aligned_cols=56 Identities=16% Similarity=0.109 Sum_probs=46.4
Q ss_pred chhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hhHHHHHHHH
Q psy5073 25 PIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG-SAATYGLLGV 80 (115)
Q Consensus 25 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 80 (115)
+..+....|.+|++.|+++.|+.....+++++++|.+.+.+.+..| |++.+++.++
T Consensus 352 ~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~ 408 (412)
T TIGR02332 352 AIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAA 408 (412)
T ss_pred hHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHH
Confidence 3344556789999999999999999999999999999999988764 8777765544
No 142
>PRK10504 putative transporter; Provisional
Probab=97.29 E-value=0.0023 Score=46.04 Aligned_cols=47 Identities=13% Similarity=-0.027 Sum_probs=39.5
Q ss_pred chhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q psy5073 25 PIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGS 71 (115)
Q Consensus 25 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (115)
+.......+..|+|.|+++.|+......++..+++.+.+.+.+..+.
T Consensus 372 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 372 SSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34446778999999999999999999999999999998888776554
No 143
>KOG3764|consensus
Probab=97.25 E-value=0.00064 Score=48.64 Aligned_cols=76 Identities=12% Similarity=0.130 Sum_probs=65.9
Q ss_pred chhhhhhcccCChhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q psy5073 25 PIPWFMMAEIIPLEA-KLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKS 100 (115)
Q Consensus 25 ~~~~~~~~E~fp~~~-R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~ 100 (115)
....+++++.||.+. |++++|+.-..-.++-.++|.+++.+.+..|-+..|.+.++++++...+..+.++.++.++
T Consensus 178 tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~ 254 (464)
T KOG3764|consen 178 TSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDP 254 (464)
T ss_pred hhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence 344467899998876 6999999999999999999999999999999989999999999999999888887765443
No 144
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=97.10 E-value=0.0035 Score=42.94 Aligned_cols=48 Identities=17% Similarity=0.021 Sum_probs=42.0
Q ss_pred ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5073 23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG 70 (115)
Q Consensus 23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (115)
..+....++.|.+|++.|++..|+......++..+++.+.+.+.+..|
T Consensus 318 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 318 INVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456666788999999999999999999999999999999999887643
No 145
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=97.08 E-value=0.0074 Score=43.47 Aligned_cols=70 Identities=13% Similarity=0.072 Sum_probs=58.1
Q ss_pred hhcccCChhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCCC
Q psy5073 30 MMAEIIPLEAKLWSSSLLM-CYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNK 99 (115)
Q Consensus 30 ~~~E~fp~~~R~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~ 99 (115)
|+++.||+|..++...+.. ....++..+.+.+.+.+.++.|.+.+|++.+.+.+...++..+.+++.++.
T Consensus 336 YI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~~ 406 (412)
T PF01306_consen 336 YITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKKQ 406 (412)
T ss_dssp HHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSST
T ss_pred HHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCcc
Confidence 7899999999999999874 444688899999999999999998899999999888888888888776553
No 146
>PRK03633 putative MFS family transporter protein; Provisional
Probab=97.07 E-value=0.01 Score=41.61 Aligned_cols=45 Identities=4% Similarity=-0.177 Sum_probs=36.8
Q ss_pred chhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy5073 25 PIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV 69 (115)
Q Consensus 25 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (115)
+.....+.|..|++.|++++++......++..+++.+.+.+.+..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 157 (381)
T PRK03633 113 VVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTEL 157 (381)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 333345678899999999999999999999999999998886653
No 147
>PRK03699 putative transporter; Provisional
Probab=97.07 E-value=0.0032 Score=44.39 Aligned_cols=65 Identities=11% Similarity=-0.029 Sum_probs=49.0
Q ss_pred ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHH
Q psy5073 23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVF 88 (115)
Q Consensus 23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (115)
..+....+..|..|. .+++..+.......++..++|.+.+++.+..|++..++..+....+....
T Consensus 311 ~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~ 375 (394)
T PRK03699 311 IYTTIITLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVM 375 (394)
T ss_pred HHHHHHHHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHH
Confidence 344444566777764 46777888888888999999999999999999988887777665555443
No 148
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=97.05 E-value=0.0065 Score=48.27 Aligned_cols=72 Identities=8% Similarity=0.016 Sum_probs=46.2
Q ss_pred cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hchhHHHHHHHHHHHHHHHHHHhhccc
Q psy5073 24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT-VGSAATYGLLGVICTLGAVFVYTRVPE 95 (115)
Q Consensus 24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~pe 95 (115)
.+....++.|..|++.|++++|+......++..+++.+...+... .++...+.+.+.+.++..++.....|+
T Consensus 340 ~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (1146)
T PRK08633 340 IVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLIGTLYTLLLLPD 412 (1146)
T ss_pred hHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 344557788999999999999999988888777776666555432 234444555544444443333333343
No 149
>PRK10054 putative transporter; Provisional
Probab=97.05 E-value=0.0078 Score=42.67 Aligned_cols=71 Identities=13% Similarity=0.134 Sum_probs=53.5
Q ss_pred cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhccc
Q psy5073 24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPE 95 (115)
Q Consensus 24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe 95 (115)
.|.....+.|..|++.|++..+... ..+++..++|.+.+.+.+..|....|.+.+...++..++..+-+.|
T Consensus 316 ~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (395)
T PRK10054 316 APGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLMLKGMRA 386 (395)
T ss_pred HhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHhcccc
Confidence 3455557889999999999988644 5678999999999999999987777777766666665555544444
No 150
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=97.05 E-value=0.0039 Score=44.23 Aligned_cols=45 Identities=11% Similarity=-0.307 Sum_probs=39.9
Q ss_pred chhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy5073 25 PIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV 69 (115)
Q Consensus 25 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (115)
|....++.|..|++.|++++|+......++..++|.+.+.+.+..
T Consensus 316 p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~ 360 (400)
T PRK11646 316 PARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLG 360 (400)
T ss_pred ccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHH
Confidence 444567889999999999999999999999999999999998874
No 151
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=97.02 E-value=0.001 Score=47.78 Aligned_cols=69 Identities=14% Similarity=0.145 Sum_probs=55.9
Q ss_pred hhhhhhcccCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcc
Q psy5073 26 IPWFMMAEIIPLEAKLWSSSLLMCYSWS-CLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVP 94 (115)
Q Consensus 26 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 94 (115)
+......|..|.+.-+++.|+...++.+ ++..+....+++.+..||.+.|.++.+.+++..++......
T Consensus 366 LiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~ 435 (448)
T COG2271 366 LIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWN 435 (448)
T ss_pred HHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 4445678999999999999999999888 77777778888888899999998888877777666554443
No 152
>KOG2816|consensus
Probab=96.99 E-value=0.0064 Score=44.45 Aligned_cols=77 Identities=17% Similarity=0.124 Sum_probs=67.2
Q ss_pred cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q psy5073 24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKS 100 (115)
Q Consensus 24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~ 100 (115)
.....+++++....+.|....|+.....+.+..++|.+........|...++.+-.+..++...+....+||+..++
T Consensus 130 ~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~ 206 (463)
T KOG2816|consen 130 FSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEK 206 (463)
T ss_pred hhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcc
Confidence 34555789999999999999999999999999999999999999988877888888888888888889999975443
No 153
>KOG2504|consensus
Probab=96.96 E-value=0.004 Score=46.00 Aligned_cols=64 Identities=9% Similarity=-0.008 Sum_probs=54.3
Q ss_pred hcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcc
Q psy5073 31 MAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVP 94 (115)
Q Consensus 31 ~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 94 (115)
+--.+..+.|+.+.|++.....++.++.|.+..++.+..||++.+.+++.+.+-........-|
T Consensus 159 iv~~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp 222 (509)
T KOG2504|consen 159 ILGTYFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRP 222 (509)
T ss_pred hhhhHhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3346778899999999999999999999999999999999999999998887666666555555
No 154
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=96.96 E-value=0.014 Score=41.04 Aligned_cols=59 Identities=12% Similarity=-0.024 Sum_probs=47.3
Q ss_pred hhhcccCCh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q psy5073 29 FMMAEIIPL-EAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAV 87 (115)
Q Consensus 29 ~~~~E~fp~-~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (115)
....+..++ +.|++.+++......++..++|.+.+.+.+..|++..|...+.+.++..+
T Consensus 326 ~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 326 TAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 344566665 89999999999999999999999999999999988777776665555433
No 155
>KOG0253|consensus
Probab=96.84 E-value=0.013 Score=42.11 Aligned_cols=75 Identities=11% Similarity=0.007 Sum_probs=53.6
Q ss_pred hhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073 20 RIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPET 96 (115)
Q Consensus 20 ~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 96 (115)
+.+..|.-.++-.|..|...|...+-.. ....++......+.-..+.+.||+|..+..... +......+++.||.
T Consensus 179 g~gg~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~p-l~~~a~f~~w~~ES 253 (528)
T KOG0253|consen 179 GVGGLPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTP-LMFAARFLVWVYES 253 (528)
T ss_pred cCCCccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhH-HHHHHHHHhhcccC
Confidence 3344566666778999999999988777 555677777777777778889999776666644 33334446788886
No 156
>PRK10133 L-fucose transporter; Provisional
Probab=96.83 E-value=0.03 Score=40.40 Aligned_cols=42 Identities=10% Similarity=-0.003 Sum_probs=32.3
Q ss_pred chhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5073 25 PIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLI 66 (115)
Q Consensus 25 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (115)
+....++.|..|.+.|...+++......++..+++.++..+.
T Consensus 136 ~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 136 TAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred hhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456778888888888899998888888888888876554
No 157
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=96.81 E-value=0.01 Score=47.39 Aligned_cols=66 Identities=3% Similarity=-0.135 Sum_probs=47.7
Q ss_pred ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hchhHHHHHHHHHHHHHHHH
Q psy5073 23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT-VGSAATYGLLGVICTLGAVF 88 (115)
Q Consensus 23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 88 (115)
..+...+++.|..|++.|++.+|+......++..+++.+...+... .+....+.+.+...++...+
T Consensus 351 ~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 417 (1140)
T PRK06814 351 YIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALANLIVAIL 417 (1140)
T ss_pred hHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 3444567889999999999999999999999899999988887643 45554555444443443333
No 158
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=96.81 E-value=0.028 Score=39.56 Aligned_cols=62 Identities=11% Similarity=0.058 Sum_probs=48.0
Q ss_pred chhhhhhcccCChhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHH
Q psy5073 25 PIPWFMMAEIIPLEAKLWSSSLLMC-YSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVF 88 (115)
Q Consensus 25 ~~~~~~~~E~fp~~~R~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (115)
+....++++. |++.|++++++... ...++..+++.+.+++.+..|. ..|+..+.+.++..++
T Consensus 312 ~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 312 LAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 3444577887 99999999999754 4568889999999999999886 5777777766655433
No 159
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=96.79 E-value=0.014 Score=41.13 Aligned_cols=72 Identities=10% Similarity=-0.052 Sum_probs=56.4
Q ss_pred HHhhcccchhhhhhcccCChh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHH
Q psy5073 18 IFRIGIGPIPWFMMAEIIPLE---AKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFV 89 (115)
Q Consensus 18 ~~~~~~~~~~~~~~~E~fp~~---~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (115)
.-.++.=|....+.+|+|+.+ .|.++..+.+.+.++++.++....+++.++.+|.+.|.+.++.++++.+..
T Consensus 45 ~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f 119 (372)
T PF00854_consen 45 VGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVF 119 (372)
T ss_dssp HHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHH
T ss_pred hccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHH
Confidence 334455577777899999776 577777888999999999999999999999999888888887777665543
No 160
>TIGR00895 2A0115 benzoate transport.
Probab=96.79 E-value=0.006 Score=42.31 Aligned_cols=44 Identities=11% Similarity=-0.041 Sum_probs=37.9
Q ss_pred cccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5073 22 GIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDL 65 (115)
Q Consensus 22 ~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (115)
...+....+.+|.+|++.|+++.|+......++..++|.+.+++
T Consensus 354 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 354 GGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 34566677899999999999999999999999999999887764
No 161
>PRK10091 MFS transport protein AraJ; Provisional
Probab=96.78 E-value=0.026 Score=39.70 Aligned_cols=65 Identities=2% Similarity=-0.314 Sum_probs=43.9
Q ss_pred hhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hchhHHHHHHHHHHHHHHHHHHhhccc
Q psy5073 29 FMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT-VGSAATYGLLGVICTLGAVFVYTRVPE 95 (115)
Q Consensus 29 ~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~pe 95 (115)
....+..|.+.++.+. ......++..++|.+.+.+.+. .++++.+.+.+....+.........+.
T Consensus 313 ~~~~~~~~~~~~~~~~--~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (382)
T PRK10091 313 LLLQNAKGGELLGAAG--GQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGRY 378 (382)
T ss_pred HHHHhCCcchHHHHHH--HHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455666666666553 4556688999999999999885 678877777766666555554444443
No 162
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=96.78 E-value=0.008 Score=43.76 Aligned_cols=53 Identities=15% Similarity=0.165 Sum_probs=43.7
Q ss_pred HHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5073 17 AIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG 70 (115)
Q Consensus 17 ~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (115)
+.++....+. ..++.|..|++.+++..++.....+++..+++.++..+.+..|
T Consensus 363 ~~~g~~~~~~-~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 363 VLAQLKFMPF-LVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred HHHHHHHccH-HHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3444444444 4678999999999999999999999999999999999988766
No 163
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=96.77 E-value=0.008 Score=43.73 Aligned_cols=61 Identities=13% Similarity=0.029 Sum_probs=39.9
Q ss_pred hhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHH
Q psy5073 27 PWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFV 89 (115)
Q Consensus 27 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (115)
.+.+.+|+. ++.|++..|+....+.+++.+.+.+.. .....+|+..|.+.+++.++..++.
T Consensus 369 ~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~ 429 (476)
T PLN00028 369 TFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPV 429 (476)
T ss_pred hcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHH
Confidence 445567765 478999999987776677766666543 1112357778888877666665544
No 164
>KOG0569|consensus
Probab=96.75 E-value=0.0086 Score=43.99 Aligned_cols=70 Identities=16% Similarity=0.052 Sum_probs=49.3
Q ss_pred hhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHh-hchhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073 26 IPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKV-FMDLIDT-VGSAATYGLLGVICTLGAVFVYTRVPET 96 (115)
Q Consensus 26 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet 96 (115)
....++.|+-|.+.||....+......++..++..+ .+.+... ..|++.+....+.+++.. +...++||+
T Consensus 136 ~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l-~~l~~~PES 207 (485)
T KOG0569|consen 136 LVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQL-ALLPFLPES 207 (485)
T ss_pred HHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHH-HHHhcCCCC
Confidence 344689999999999999988888777777777454 3444433 457666666666555554 445789996
No 165
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=96.68 E-value=0.005 Score=44.35 Aligned_cols=62 Identities=6% Similarity=0.030 Sum_probs=45.5
Q ss_pred hhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---chhHHHHHHHHHHHHHHHHH
Q psy5073 27 PWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV---GSAATYGLLGVICTLGAVFV 89 (115)
Q Consensus 27 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 89 (115)
.+....|..|. .++...|+....+.+++.+.|.+.+.+.+.. +|...|.+.++..++..++.
T Consensus 382 ~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~ 446 (465)
T TIGR00894 382 VLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFY 446 (465)
T ss_pred hhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHe
Confidence 33444566654 8999999999999999999999998887653 36667777776666665443
No 166
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=96.67 E-value=0.023 Score=41.65 Aligned_cols=88 Identities=19% Similarity=0.182 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhhcccchhhhhhcccC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------chhHHHHHHH
Q psy5073 8 PIFSVCTIVAIFRIGIGPIPWFMMAEII-PLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV-------GSAATYGLLG 79 (115)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~E~f-p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 79 (115)
+.+...++...+.. .+-...++.+|+. .+++|.+-.+.=.....++..+...+.+++++.. |++.+-.+++
T Consensus 115 a~vtY~l~~l~YT~-vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~ 193 (467)
T COG2211 115 ALVTYMLLGLGYTL-VNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLG 193 (467)
T ss_pred HHHHHHHHHHHHHh-eeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHH
Confidence 33444444445554 3444557889998 7899999999999999998899988888887753 4555566666
Q ss_pred HHHHHHHHHHHhhcccC
Q psy5073 80 VICTLGAVFVYTRVPET 96 (115)
Q Consensus 80 ~~~~~~~~~~~~~~pet 96 (115)
++.++..+++++-.+|.
T Consensus 194 vi~~i~~l~~~~~v~ER 210 (467)
T COG2211 194 VIGVILLLFCFFNVKER 210 (467)
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 66666666666666664
No 167
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=96.58 E-value=0.03 Score=39.48 Aligned_cols=55 Identities=7% Similarity=0.031 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073 41 LWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPET 96 (115)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet 96 (115)
+...|.......++..++|.+.+.+.+ .+|+..|++.+.+.++..++.....||+
T Consensus 132 ~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 186 (396)
T TIGR00882 132 NFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPKA 186 (396)
T ss_pred ccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 345567777778888889988887654 5899999888877777666555445553
No 168
>PRK10429 melibiose:sodium symporter; Provisional
Probab=96.58 E-value=0.15 Score=37.16 Aligned_cols=73 Identities=10% Similarity=0.091 Sum_probs=46.6
Q ss_pred cchhhhhhcccC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------chhHHHHHHHHHHHHHHHHHHhhccc
Q psy5073 24 GPIPWFMMAEII-PLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV-------GSAATYGLLGVICTLGAVFVYTRVPE 95 (115)
Q Consensus 24 ~~~~~~~~~E~f-p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~pe 95 (115)
.....+..+|+. ++++|.+..++-.....+++.+.+.+...+.+.. +++....+.+++..+..+...+..||
T Consensus 124 ~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e 203 (473)
T PRK10429 124 DIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHE 203 (473)
T ss_pred cchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCcee
Confidence 444557789999 6999999998876666666666655555443322 34445555555555555555555676
Q ss_pred C
Q psy5073 96 T 96 (115)
Q Consensus 96 t 96 (115)
.
T Consensus 204 ~ 204 (473)
T PRK10429 204 V 204 (473)
T ss_pred c
Confidence 4
No 169
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=96.54 E-value=0.022 Score=40.90 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=41.9
Q ss_pred cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q psy5073 24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSA 72 (115)
Q Consensus 24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (115)
+....++++|..|+|.|++..++.+...-++..++..+...+.+.....
T Consensus 107 ~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~ 155 (403)
T PF03209_consen 107 GTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPE 155 (403)
T ss_pred HHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHH
Confidence 3455568999999999999999999999999999999999888876543
No 170
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=96.52 E-value=0.016 Score=40.81 Aligned_cols=63 Identities=13% Similarity=0.140 Sum_probs=50.9
Q ss_pred hhhcccCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHh
Q psy5073 29 FMMAEIIPLEAKLWSSSL-LMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYT 91 (115)
Q Consensus 29 ~~~~E~fp~~~R~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (115)
.+..|.+|++.|+++.+. ......++..+++.+.+++.+..|++..|.+.+++.++..++..+
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~ 393 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISVF 393 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 356788899999887776 456678899999999999999999998998888887777665443
No 171
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=96.46 E-value=0.025 Score=41.24 Aligned_cols=74 Identities=16% Similarity=0.018 Sum_probs=53.6
Q ss_pred cccchhhhhhcccCChhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCC
Q psy5073 22 GIGPIPWFMMAEIIPLEAKLW---SSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETK 97 (115)
Q Consensus 22 ~~~~~~~~~~~E~fp~~~R~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~ 97 (115)
..-...-.+..|..+ |.+.. .++..+....++..+++.+.+.+.+..+|+..|++.+...++. .+...+.||.+
T Consensus 136 ~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~-~~~~~~~~E~~ 212 (468)
T TIGR00788 136 LYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQ-LFVSNLSKERR 212 (468)
T ss_pred HHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHH-HHHHHhccccc
Confidence 334556668889998 55544 3445555556788999999999999899999998888777766 44456778864
No 172
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=96.39 E-value=0.0098 Score=43.67 Aligned_cols=73 Identities=12% Similarity=0.086 Sum_probs=45.7
Q ss_pred HHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhhchhHHHHHHHHHHHHHHH
Q psy5073 18 IFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLI----------DTVGSAATYGLLGVICTLGAV 87 (115)
Q Consensus 18 ~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~ 87 (115)
.......|....++.+..|++.|++.+|+......++..++..+..... ...+..+.|...++..++..+
T Consensus 394 ~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~ 473 (500)
T PRK09584 394 IGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAV 473 (500)
T ss_pred HHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHH
Confidence 3444456777778899999999999999887666666666555553221 111244566666665554444
Q ss_pred HHH
Q psy5073 88 FVY 90 (115)
Q Consensus 88 ~~~ 90 (115)
+..
T Consensus 474 ~~~ 476 (500)
T PRK09584 474 LML 476 (500)
T ss_pred HHH
Confidence 333
No 173
>KOG3762|consensus
Probab=96.39 E-value=0.0038 Score=46.37 Aligned_cols=66 Identities=15% Similarity=0.115 Sum_probs=54.8
Q ss_pred ccchhhhhhcccCChhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHH
Q psy5073 23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYS-WSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVF 88 (115)
Q Consensus 23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (115)
.+....+|++..-|++.|.+++++..... .++-..++++++.+...++-+.+|.++++.+++..++
T Consensus 476 iWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~ 542 (618)
T KOG3762|consen 476 IWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLAL 542 (618)
T ss_pred HHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHH
Confidence 34445578999999999999999997666 6888999999999999999888898888877666554
No 174
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=96.32 E-value=0.13 Score=37.01 Aligned_cols=64 Identities=17% Similarity=0.046 Sum_probs=52.7
Q ss_pred hhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcc
Q psy5073 30 MMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVP 94 (115)
Q Consensus 30 ~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 94 (115)
-.+| .-++.+..+.++.....+++...+..+++.+.++.|+....++-+...++...+.....+
T Consensus 324 ~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 324 RLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred Hhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445 557999999999999999999999999999999999988888888777777666544433
No 175
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=96.31 E-value=0.053 Score=38.29 Aligned_cols=62 Identities=10% Similarity=-0.187 Sum_probs=41.7
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhccc
Q psy5073 34 IIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPE 95 (115)
Q Consensus 34 ~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe 95 (115)
.-+++.|++..++......++..+++.+...+.+..++....+...+..++...+...+.++
T Consensus 336 ~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (406)
T PRK15402 336 FSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLWLLLVRIFLKD 397 (406)
T ss_pred hhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34558999999999999999999999999998887776443333333333333333334433
No 176
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=96.28 E-value=0.0022 Score=46.95 Aligned_cols=70 Identities=16% Similarity=0.085 Sum_probs=55.6
Q ss_pred cchhhhhhcccCChhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcc
Q psy5073 24 GPIPWFMMAEIIPLEA--KLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVP 94 (115)
Q Consensus 24 ~~~~~~~~~E~fp~~~--R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 94 (115)
=|..-.+++|++|++. |..+.++.++.-++++.+.|.+.+++.+..||+..|...++-+.+..+. +.+++
T Consensus 135 K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~-f~~~~ 206 (498)
T COG3104 135 KPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVI-FLLGR 206 (498)
T ss_pred cccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHH-HHHcc
Confidence 3556668999996543 7788888899999999999999999999999998888888766666444 44444
No 177
>PRK09528 lacY galactoside permease; Reviewed
Probab=96.27 E-value=0.026 Score=40.14 Aligned_cols=57 Identities=9% Similarity=0.016 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhccc
Q psy5073 38 EAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPE 95 (115)
Q Consensus 38 ~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe 95 (115)
+.|+...|.......++..++|.+.+.+.+ .+|++.|+..+...++..++.++..||
T Consensus 137 ~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~ 193 (420)
T PRK09528 137 RRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPD 193 (420)
T ss_pred hhccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhccccc
Confidence 345556677777788889999999888865 488888888777766665555444444
No 178
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=96.26 E-value=0.081 Score=37.45 Aligned_cols=63 Identities=14% Similarity=0.084 Sum_probs=42.9
Q ss_pred cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH
Q psy5073 24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVY 90 (115)
Q Consensus 24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (115)
.+....++.|.+|.+.++ +......++....+.+.+.+.+..||+..|...+.+.++..++..
T Consensus 325 ~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~ 387 (402)
T PRK11902 325 VALLMALCNRSFSATQYA----LLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLW 387 (402)
T ss_pred HHHHHHhcCCCCcHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 344445777888866554 333344555555667899999999999888888877777655543
No 179
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=96.21 E-value=0.019 Score=38.70 Aligned_cols=40 Identities=5% Similarity=0.058 Sum_probs=32.7
Q ss_pred hhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5073 30 MMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG 70 (115)
Q Consensus 30 ~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (115)
.-.+.|| +.|+++.|+......+++.+.+.+...+.....
T Consensus 120 t~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~ 159 (250)
T PF06813_consen 120 TCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDP 159 (250)
T ss_pred HHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCCh
Confidence 3458998 579999999999999989888888877776643
No 180
>PRK09669 putative symporter YagG; Provisional
Probab=96.16 E-value=0.12 Score=37.07 Aligned_cols=50 Identities=16% Similarity=0.093 Sum_probs=35.8
Q ss_pred cccchhhhhhcccCChhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q psy5073 22 GIGPIPWFMMAEIIPLEA-------KLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGS 71 (115)
Q Consensus 22 ~~~~~~~~~~~E~fp~~~-------R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (115)
...+..+++++|..+.++ .+...|+......++.++++.+.+.+.+..|.
T Consensus 335 ~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 335 LTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 445778888999987433 33445666667788899999998888876543
No 181
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=96.13 E-value=0.025 Score=40.87 Aligned_cols=86 Identities=16% Similarity=0.084 Sum_probs=60.2
Q ss_pred HHHHHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch-hHHHHHHHHHHHHHHHHHHhh
Q psy5073 14 TIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGS-AATYGLLGVICTLGAVFVYTR 92 (115)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 92 (115)
++.+.+-.+..+..-.+.+++.|++.-+...|+....+......+|.+...+.+..|- +..+....++ +...+.....
T Consensus 349 ll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vl-l~iGl~~L~~ 427 (438)
T COG2270 349 LLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVL-LLIGLLLLLR 427 (438)
T ss_pred HHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHH-HHhhHhhEEe
Confidence 3333444455666777999999999999999999999999999999999999887653 3333333333 3333444566
Q ss_pred cccCCCCC
Q psy5073 93 VPETKNKS 100 (115)
Q Consensus 93 ~pet~~~~ 100 (115)
.|+.+.++
T Consensus 428 v~~~~~~~ 435 (438)
T COG2270 428 VKVPGRRE 435 (438)
T ss_pred ecCCCCcc
Confidence 77654443
No 182
>PRK09848 glucuronide transporter; Provisional
Probab=96.13 E-value=0.13 Score=37.04 Aligned_cols=47 Identities=11% Similarity=0.073 Sum_probs=35.3
Q ss_pred cchhhhhhcccCChh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5073 24 GPIPWFMMAEIIPLE-------AKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG 70 (115)
Q Consensus 24 ~~~~~~~~~E~fp~~-------~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (115)
.+...+..+|.-|.+ .++...|+......++..+++.+.+.+.+..|
T Consensus 337 ~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G 390 (448)
T PRK09848 337 MTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSG 390 (448)
T ss_pred HHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 355666778887754 35888888888888999999888888776544
No 183
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=95.96 E-value=7.2e-05 Score=53.38 Aligned_cols=74 Identities=18% Similarity=0.092 Sum_probs=51.1
Q ss_pred cccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hchhHHHHHHHHHHHHHHHHHHhhcccC
Q psy5073 22 GIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT---VGSAATYGLLGVICTLGAVFVYTRVPET 96 (115)
Q Consensus 22 ~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~pet 96 (115)
+..+....++.|..|++.|+...++......++..++..+.....+. .+|+..+....+..++. .+...++||+
T Consensus 118 ~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~-~~~~~~~pES 194 (451)
T PF00083_consen 118 GAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLV-LLLRFFLPES 194 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence 34456667899999999999999988877766666666555444333 34887766666655554 3445788986
No 184
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=95.62 E-value=0.39 Score=36.86 Aligned_cols=67 Identities=10% Similarity=0.041 Sum_probs=51.3
Q ss_pred ccchhhhhhcccCChh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------chhHHHHHHHHHHHHHHHHH
Q psy5073 23 IGPIPWFMMAEIIPLE---AKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV-------GSAATYGLLGVICTLGAVFV 89 (115)
Q Consensus 23 ~~~~~~~~~~E~fp~~---~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 89 (115)
.-|...+...|+|+.+ .|.+...+.++..++++.+++.+.+++.+.. +|...|.+.++.+++..++.
T Consensus 102 iKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf 178 (654)
T TIGR00926 102 IKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVF 178 (654)
T ss_pred cccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHH
Confidence 3466667888999753 4788888999999999999999999987553 57778887777766665543
No 185
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=95.60 E-value=0.14 Score=37.76 Aligned_cols=76 Identities=7% Similarity=0.036 Sum_probs=56.5
Q ss_pred ccchhhhhhcccCChhhH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------
Q psy5073 23 IGPIPWFMMAEIIPLEAK--------------------------LWSSSLLMCYSWSCLFLVSKVFMDLIDTV------- 69 (115)
Q Consensus 23 ~~~~~~~~~~E~fp~~~R--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 69 (115)
......++++|+-+++.+ ++-.+.....+.+++.+.-.+...+....
T Consensus 143 ~~vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~ 222 (477)
T PF11700_consen 143 SNVFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNT 222 (477)
T ss_pred HHHHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccc
Confidence 345566789999999988 89999999888888888777766654432
Q ss_pred -chhHHHHHHHHHHHHHHHHHHhhcccCCC
Q psy5073 70 -GSAATYGLLGVICTLGAVFVYTRVPETKN 98 (115)
Q Consensus 70 -~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 98 (115)
+.+..+.+.++.-++..+-.+++.||.++
T Consensus 223 ~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~ 252 (477)
T PF11700_consen 223 WAIRVAFLIVALWWLVFSIPLFLWLPDRPG 252 (477)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 23556777777777777777788888754
No 186
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=95.55 E-value=0.15 Score=37.54 Aligned_cols=79 Identities=11% Similarity=-0.033 Sum_probs=58.5
Q ss_pred hhcccchhhhhhcccCChhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--hhHHHHHHHHHHHHHHHHHHhhccc
Q psy5073 20 RIGIGPIPWFMMAEIIPLEAK--LWSSSLLMCYSWSCLFLVSKVFMDLIDTVG--SAATYGLLGVICTLGAVFVYTRVPE 95 (115)
Q Consensus 20 ~~~~~~~~~~~~~E~fp~~~R--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~pe 95 (115)
.....++|+++++|..|.+.| +..+|+....--+-..+.....+.+.+..| ..+.+.+-++..++..++..+.+|+
T Consensus 394 ~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~ 473 (477)
T TIGR01301 394 LAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR 473 (477)
T ss_pred HHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence 334568899999999996555 777788777766667777766666555544 3357788888888888898899998
Q ss_pred CCC
Q psy5073 96 TKN 98 (115)
Q Consensus 96 t~~ 98 (115)
++.
T Consensus 474 ~~~ 476 (477)
T TIGR01301 474 PRV 476 (477)
T ss_pred CCC
Confidence 764
No 187
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=95.37 E-value=0.4 Score=34.03 Aligned_cols=63 Identities=11% Similarity=-0.020 Sum_probs=44.1
Q ss_pred chhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHH
Q psy5073 25 PIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVF 88 (115)
Q Consensus 25 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (115)
+.....+.+..| +.+++..++......++..+++.+.+.+.+..|.+..+...+.+..+..++
T Consensus 324 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~ 386 (394)
T PRK10213 324 VGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTALL 386 (394)
T ss_pred HHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHH
Confidence 333345677777 445566677777778899999999999999888876666665555444443
No 188
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=95.36 E-value=0.32 Score=33.72 Aligned_cols=42 Identities=17% Similarity=0.037 Sum_probs=29.3
Q ss_pred ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5073 23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDL 65 (115)
Q Consensus 23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (115)
..+.......|.+| +.|+++.++........+.+.+.+.+.+
T Consensus 317 ~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~ 358 (385)
T TIGR00710 317 ISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLI 358 (385)
T ss_pred HHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555566788887 6799999998887776666666665533
No 189
>PRK11043 putative transporter; Provisional
Probab=95.17 E-value=0.3 Score=34.38 Aligned_cols=44 Identities=25% Similarity=0.176 Sum_probs=33.1
Q ss_pred cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5073 24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT 68 (115)
Q Consensus 24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (115)
.+.......|.+| +.|++++|+.......++..++.+.+.+.+.
T Consensus 314 ~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 357 (401)
T PRK11043 314 YPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIST 357 (401)
T ss_pred HHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 3444445557776 5799999999988888888888888887664
No 190
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=95.07 E-value=0.21 Score=36.17 Aligned_cols=66 Identities=14% Similarity=0.086 Sum_probs=52.4
Q ss_pred hhhcccC---ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhccc
Q psy5073 29 FMMAEII---PLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPE 95 (115)
Q Consensus 29 ~~~~E~f---p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe 95 (115)
+...|.- |.+ |+.-++..+..-.+++.++..+.+++.+..+.++.|.+.+.+..+..+...+..+|
T Consensus 109 a~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 109 ALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred HHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhh
Confidence 3455655 555 88889999888889999999999999999998888888887777776666666666
No 191
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=95.06 E-value=0.28 Score=35.56 Aligned_cols=77 Identities=19% Similarity=0.099 Sum_probs=53.2
Q ss_pred hhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch--------hHHHHHHHHHHHHHHHHHHh
Q psy5073 20 RIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGS--------AATYGLLGVICTLGAVFVYT 91 (115)
Q Consensus 20 ~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 91 (115)
....-|.. ...+|+.|+..-++..++.....+++..++..++..+.+..+. .+...+..+..++. +....
T Consensus 333 ~i~~mP~l-vl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~-l~ll~ 410 (433)
T PF03092_consen 333 MIAFMPSL-VLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLP-LPLLF 410 (433)
T ss_pred HHHHHHHH-HHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHH-HHHHH
Confidence 33344444 4689999999999999999999999999999999998876552 22344444444333 33345
Q ss_pred hcccCCC
Q psy5073 92 RVPETKN 98 (115)
Q Consensus 92 ~~pet~~ 98 (115)
++|+.++
T Consensus 411 lLp~~~~ 417 (433)
T PF03092_consen 411 LLPPQKR 417 (433)
T ss_pred HcCCCch
Confidence 6676443
No 192
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=95.02 E-value=0.4 Score=34.03 Aligned_cols=52 Identities=10% Similarity=-0.006 Sum_probs=36.3
Q ss_pred hhhhhcccCChhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHH
Q psy5073 27 PWFMMAEIIPLEA-KLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLG 79 (115)
Q Consensus 27 ~~~~~~E~fp~~~-R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (115)
....+.|.-|++. |+++.++......++..++..+...+ ...|.+..+.+.+
T Consensus 314 ~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 366 (393)
T PRK11195 314 MNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVG 366 (393)
T ss_pred HHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHH
Confidence 4455677766655 79999999988888888888887755 5556555554433
No 193
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=94.94 E-value=0.59 Score=32.87 Aligned_cols=62 Identities=8% Similarity=0.075 Sum_probs=41.6
Q ss_pred chhhhhhcccCChhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHH
Q psy5073 25 PIPWFMMAEIIPLEAKLWSSSLLMCY-SWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVF 88 (115)
Q Consensus 25 ~~~~~~~~E~fp~~~R~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (115)
+....+..+. +++.+++.+++.... ...+..++|.+.+.+.+..++ ..++..+++.+....+
T Consensus 312 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T PRK11128 312 LAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPALFI 374 (382)
T ss_pred HHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 3343456676 666678888887644 345668899999999999887 4666665555444333
No 194
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=94.87 E-value=0.1 Score=35.53 Aligned_cols=40 Identities=15% Similarity=0.030 Sum_probs=33.8
Q ss_pred hhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHH
Q psy5073 20 RIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVS 59 (115)
Q Consensus 20 ~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~ 59 (115)
.....+....+..|.+|++.|++..|+......++..++|
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 313 FGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 3334677778899999999999999999999888888776
No 195
>KOG2504|consensus
Probab=94.85 E-value=0.012 Score=43.59 Aligned_cols=80 Identities=14% Similarity=0.168 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHH
Q psy5073 10 FSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG-SAATYGLLGVICTLGAVF 88 (115)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 88 (115)
+..+++.++...+........+.|+.+.+.-..+.|+......++..++|.+.+++.+..+ +...|...++..++....
T Consensus 392 ~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~ 471 (509)
T KOG2504|consen 392 IVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVL 471 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHH
Confidence 3333334344444556665678999999999999999999999999999999998888776 766777777766666544
Q ss_pred H
Q psy5073 89 V 89 (115)
Q Consensus 89 ~ 89 (115)
.
T Consensus 472 ~ 472 (509)
T KOG2504|consen 472 L 472 (509)
T ss_pred H
Confidence 3
No 196
>PRK11462 putative transporter; Provisional
Probab=94.76 E-value=0.47 Score=34.56 Aligned_cols=47 Identities=17% Similarity=0.203 Sum_probs=31.0
Q ss_pred ccchhhhhhcccCC-----hhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhh
Q psy5073 23 IGPIPWFMMAEIIP-----LEAKLWSSSLL--MCYSWSCLFLVSKVFMDLIDTV 69 (115)
Q Consensus 23 ~~~~~~~~~~E~fp-----~~~R~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 69 (115)
..+..+.+.+|.-. +..|..+..++ .....++..+++.+.+.+.+..
T Consensus 335 ~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~ 388 (460)
T PRK11462 335 VTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYG 388 (460)
T ss_pred HHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34555677777766 34666666444 3666788888888887777653
No 197
>PRK10429 melibiose:sodium symporter; Provisional
Probab=94.70 E-value=0.73 Score=33.58 Aligned_cols=48 Identities=13% Similarity=0.042 Sum_probs=32.6
Q ss_pred ccchhhhhhcccCC-----hhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5073 23 IGPIPWFMMAEIIP-----LEAKLWSS--SLLMCYSWSCLFLVSKVFMDLIDTVG 70 (115)
Q Consensus 23 ~~~~~~~~~~E~fp-----~~~R~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (115)
..+..+++++|..+ +..|..+. |.......++..+++.+.+.+.+..|
T Consensus 341 ~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~G 395 (473)
T PRK10429 341 FWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIG 395 (473)
T ss_pred HHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34566778899944 55555555 44455567888888888888876544
No 198
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=94.50 E-value=0.71 Score=34.01 Aligned_cols=54 Identities=6% Similarity=0.113 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHHHhh
Q psy5073 39 AKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG-SAATYGLLGVICTLGAVFVYTR 92 (115)
Q Consensus 39 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 92 (115)
.-+...|+..+.+.+++++.|.+.+...+..| +...|+.+....++...+.+.+
T Consensus 399 ~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~ 453 (462)
T PRK15034 399 ETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLV 453 (462)
T ss_pred HHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888999999999988888877654 4445666666555555544433
No 199
>KOG4686|consensus
Probab=94.27 E-value=0.12 Score=36.29 Aligned_cols=59 Identities=12% Similarity=0.082 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5073 8 PIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG 70 (115)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (115)
.+..+.+-....++..+|. ++-+.|.+.-+++.|++....+++-.+.|.+.+.+.+..|
T Consensus 358 ~m~~lGLsysllAcslWP~----va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g 416 (459)
T KOG4686|consen 358 SMTFLGLSYSLLACSLWPC----VASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG 416 (459)
T ss_pred HHHHHhhhHHHHHHHHhhh----hhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence 3333333333444444554 5667788999999999999999999999999999998766
No 200
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=94.27 E-value=0.78 Score=31.87 Aligned_cols=24 Identities=17% Similarity=0.058 Sum_probs=17.4
Q ss_pred hhhhhcccCChhhHHHHHHHHHHHH
Q psy5073 27 PWFMMAEIIPLEAKLWSSSLLMCYS 51 (115)
Q Consensus 27 ~~~~~~E~fp~~~R~~~~~~~~~~~ 51 (115)
...+..|..| +.|+++.++.....
T Consensus 308 ~~~~~~~~~~-~~~g~~~~~~~~~~ 331 (377)
T PRK11102 308 AMAVILDEFP-HMAGTASSLAGTLR 331 (377)
T ss_pred HHHHHhcccc-ccchHHHHHHHHHH
Confidence 3345678777 88999999876554
No 201
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=94.23 E-value=1.1 Score=33.06 Aligned_cols=50 Identities=8% Similarity=0.080 Sum_probs=42.5
Q ss_pred HHhhcccc-hhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5073 18 IFRIGIGP-IPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID 67 (115)
Q Consensus 18 ~~~~~~~~-~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (115)
.++...-+ +.|.+.+|+++.++-.+-.++...+++++..+++.+..++.+
T Consensus 140 lw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 140 LWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444 889999999999999999999999999999999988888763
No 202
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=94.17 E-value=0.42 Score=32.99 Aligned_cols=59 Identities=17% Similarity=0.195 Sum_probs=41.8
Q ss_pred HHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHH
Q psy5073 18 IFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLL 78 (115)
Q Consensus 18 ~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (115)
++.....|.......|.+|.+ .+++.++. ..+.+++.+.|.+.+.+.+..|.+..+++.
T Consensus 242 ~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~ 300 (310)
T TIGR01272 242 LFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALP 300 (310)
T ss_pred HHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHH
Confidence 334445566666677888865 34566664 566788999999999999988877666633
No 203
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=94.10 E-value=0.34 Score=34.01 Aligned_cols=48 Identities=17% Similarity=0.150 Sum_probs=29.6
Q ss_pred hhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q psy5073 30 MMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGV 80 (115)
Q Consensus 30 ~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (115)
...++.|.+.|. |.......++..+++.+.+++.+..++.......+.
T Consensus 314 ~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~ 361 (392)
T PRK10473 314 MSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIGI 361 (392)
T ss_pred HHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 345666765554 444444556677778888888887776654444443
No 204
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=94.07 E-value=0.69 Score=33.06 Aligned_cols=65 Identities=14% Similarity=0.037 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH-HHHhhcccCCCCCHHHH
Q psy5073 39 AKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAV-FVYTRVPETKNKSFEAI 104 (115)
Q Consensus 39 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~pet~~~~~~~~ 104 (115)
.|+++.++...........++....++... +..+.+...+.+..+... ...+..++.|+++..|.
T Consensus 344 ~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (413)
T PRK15403 344 PKGTVSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGVIVVFTLAGLLNRVRQHQAAEL 409 (413)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhH
Confidence 478888888888888888888888877665 434555555444333323 33333444444444443
No 205
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=93.65 E-value=0.59 Score=33.65 Aligned_cols=42 Identities=10% Similarity=-0.071 Sum_probs=36.1
Q ss_pred hhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5073 29 FMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG 70 (115)
Q Consensus 29 ~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (115)
....|.+|++.|+++.|+......+++.+++.+.+.+.++..
T Consensus 371 ~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~~~ 412 (485)
T TIGR00711 371 TIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTNRT 412 (485)
T ss_pred HHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688999999999999999999999999999988877543
No 206
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=93.62 E-value=1.3 Score=31.19 Aligned_cols=44 Identities=18% Similarity=-0.107 Sum_probs=34.2
Q ss_pred cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5073 24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT 68 (115)
Q Consensus 24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (115)
.|....+..|.+| +.|+++.++......+++.+++.+...+...
T Consensus 317 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~ 360 (394)
T PRK11652 317 FPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT 360 (394)
T ss_pred HHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 4555566778887 5789999999888888888888887776544
No 207
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=93.60 E-value=1.5 Score=32.41 Aligned_cols=71 Identities=15% Similarity=0.106 Sum_probs=45.9
Q ss_pred ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hhchhHHHHHHHHHHHHHHHHHHhh
Q psy5073 23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID----------TVGSAATYGLLGVICTLGAVFVYTR 92 (115)
Q Consensus 23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (115)
..|....++.+..|++.++.++|+......+++.++..+...... .....+.|...++..++..++....
T Consensus 396 ~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~ 475 (489)
T PRK10207 396 ISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALM 475 (489)
T ss_pred HhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555677889999999999999988877777777766644321 1112345666665555555544443
Q ss_pred c
Q psy5073 93 V 93 (115)
Q Consensus 93 ~ 93 (115)
.
T Consensus 476 ~ 476 (489)
T PRK10207 476 V 476 (489)
T ss_pred H
Confidence 3
No 208
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=93.34 E-value=0.52 Score=34.19 Aligned_cols=73 Identities=16% Similarity=0.212 Sum_probs=54.5
Q ss_pred HHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHHHhh
Q psy5073 18 IFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG-SAATYGLLGVICTLGAVFVYTR 92 (115)
Q Consensus 18 ~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 92 (115)
+.+.+-+++ +-.++.+||. +-+...|+..+++.++++..|.......+..| +...|+++....++..++....
T Consensus 327 ~~G~GnGsv-fk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~ 400 (417)
T COG2223 327 FAGLGNGSV-FKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWAL 400 (417)
T ss_pred HhccCcchh-eeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444 4568888877 55778899999999999999999999999887 6667887777777666654433
No 209
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=93.26 E-value=0.25 Score=35.70 Aligned_cols=71 Identities=13% Similarity=0.164 Sum_probs=49.2
Q ss_pred HHHHHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Q psy5073 14 TIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGA 86 (115)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (115)
+..+.+...+.|.......+..|.+....+. .....-+++.+.|++.+++.+..|....+.....++.+..
T Consensus 332 ~~ig~F~simfPTIfslal~~l~~~ts~~s~--~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV 402 (422)
T COG0738 332 FLIGLFNSIMFPTIFSLALKNLGEHTSVGSG--LLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYV 402 (422)
T ss_pred HHHHHHhHHHHHHHHHHHHhccCccccccce--eeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3345666677888888888888844333333 3334567899999999999999998777765555555544
No 210
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=92.98 E-value=2.2 Score=31.74 Aligned_cols=49 Identities=12% Similarity=0.035 Sum_probs=34.6
Q ss_pred HHHhhcccchhhhhhcccCChhhHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy5073 17 AIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYS-WSCLFLVSKVFMDL 65 (115)
Q Consensus 17 ~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~-~~~~~~~~~~~~~~ 65 (115)
..--....|+..+.++++-|+|.|++.+|...... .++..++..+....
T Consensus 388 t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 388 GFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQT 437 (493)
T ss_pred HHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445567888889999999999999999986533 45555554444433
No 211
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=92.97 E-value=2.7 Score=31.34 Aligned_cols=43 Identities=14% Similarity=0.042 Sum_probs=39.4
Q ss_pred chhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5073 25 PIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID 67 (115)
Q Consensus 25 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (115)
-+.|.+..|+++.++-.+-.++...+++++..++..+..++.+
T Consensus 163 lLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 163 LLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999998888877
No 212
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=92.27 E-value=2.7 Score=30.30 Aligned_cols=67 Identities=10% Similarity=0.064 Sum_probs=53.0
Q ss_pred cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-chhHHHHHHHHHHHHHHHHHHh
Q psy5073 24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV-GSAATYGLLGVICTLGAVFVYT 91 (115)
Q Consensus 24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 91 (115)
+.+-+..+-|-||.|. +.-+|++.....+++.+++.+..++.++. +|++...+.+...++..+....
T Consensus 117 nVLLPslIK~~Fpk~~-~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlP 184 (395)
T COG2807 117 NVLLPSLIKRDFPKRV-GLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLP 184 (395)
T ss_pred HHhhhHHHHhhcccch-hhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhh
Confidence 3445567888888664 67788888888899999999999998887 7999998888887777665443
No 213
>KOG2532|consensus
Probab=92.26 E-value=0.29 Score=35.99 Aligned_cols=64 Identities=6% Similarity=-0.011 Sum_probs=50.5
Q ss_pred hhhcccC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hchhHHHHHHHHHHHHHHHHHHhh
Q psy5073 29 FMMAEII-PLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT---VGSAATYGLLGVICTLGAVFVYTR 92 (115)
Q Consensus 29 ~~~~E~f-p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 92 (115)
.+.+-+- .++.-+..+|+......+.+++.|.+.+.+..+ ..|+++|.+.+.+.++..++..++
T Consensus 379 f~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 379 FYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred hHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 3444444 778889999999999999999999999999843 479999999988888877554433
No 214
>KOG2325|consensus
Probab=92.10 E-value=1 Score=33.46 Aligned_cols=73 Identities=11% Similarity=0.008 Sum_probs=52.4
Q ss_pred cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--c-----------hhHHHHHHHHHHHHHHHHHH
Q psy5073 24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV--G-----------SAATYGLLGVICTLGAVFVY 90 (115)
Q Consensus 24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----------~~~~~~~~~~~~~~~~~~~~ 90 (115)
....-.|+++....+.|.++++.......++..++|.+.+.+..-. | ....-|+..++.++..++..
T Consensus 147 ~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~ 226 (488)
T KOG2325|consen 147 FAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIIL 226 (488)
T ss_pred HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHH
Confidence 3455569999999999999999998877777777777766654321 1 11245677777788888888
Q ss_pred hhcccC
Q psy5073 91 TRVPET 96 (115)
Q Consensus 91 ~~~pet 96 (115)
++.+|.
T Consensus 227 ~~f~E~ 232 (488)
T KOG2325|consen 227 FFFKEV 232 (488)
T ss_pred hheeec
Confidence 888874
No 215
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=91.51 E-value=1.4 Score=31.53 Aligned_cols=59 Identities=15% Similarity=0.044 Sum_probs=43.0
Q ss_pred HHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------chhHHHHHH
Q psy5073 18 IFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV------GSAATYGLL 78 (115)
Q Consensus 18 ~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 78 (115)
++...+.|..+....+..+++.+..+.++.+.. +++.+.|.+.+.+.+.. +.+..|.+-
T Consensus 333 lf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~ 397 (410)
T TIGR00885 333 AFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMKEIAAAPAVNTSFILP 397 (410)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHHhcccccCccchHHHHH
Confidence 444445588888889999988876677666654 88999999999999853 344555543
No 216
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=91.48 E-value=2.9 Score=30.45 Aligned_cols=38 Identities=13% Similarity=-0.010 Sum_probs=34.8
Q ss_pred hhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5073 30 MMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID 67 (115)
Q Consensus 30 ~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (115)
+++.+.|++..+.-+.+....+.+++.++|.++.+++.
T Consensus 128 ~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 128 YVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred HHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999988877
No 217
>PRK09848 glucuronide transporter; Provisional
Probab=91.47 E-value=4 Score=29.38 Aligned_cols=23 Identities=0% Similarity=-0.182 Sum_probs=13.3
Q ss_pred hhhhcccC-ChhhHHHHHHHHHHH
Q psy5073 28 WFMMAEII-PLEAKLWSSSLLMCY 50 (115)
Q Consensus 28 ~~~~~E~f-p~~~R~~~~~~~~~~ 50 (115)
.+...|+. ++++|.+..++-...
T Consensus 131 ~al~~~~~~~~~~r~~~~~~r~~~ 154 (448)
T PRK09848 131 GSLATAMTQQPQSRARLGAARGIA 154 (448)
T ss_pred hhhhhhhcCCHHHHHHHHHHHHHH
Confidence 34456666 457788766554433
No 218
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=89.48 E-value=7.1 Score=29.02 Aligned_cols=52 Identities=13% Similarity=0.108 Sum_probs=33.5
Q ss_pred HHhhcccchhhhhhcccCC-----hhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhh
Q psy5073 18 IFRIGIGPIPWFMMAEIIP-----LEAKLWSSSLLMC--YSWSCLFLVSKVFMDLIDTV 69 (115)
Q Consensus 18 ~~~~~~~~~~~~~~~E~fp-----~~~R~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 69 (115)
......++.+|++++|.-. +..|..|...+.+ ..-++..++..+.+++....
T Consensus 339 ~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~ 397 (467)
T COG2211 339 VGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAI 397 (467)
T ss_pred HHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344567999999999864 4556666555533 33566777777777766543
No 219
>TIGR00901 2A0125 AmpG-related permease.
Probab=89.10 E-value=0.6 Score=32.30 Aligned_cols=29 Identities=10% Similarity=-0.118 Sum_probs=23.8
Q ss_pred ccchhhhhhcccCChhhHHHHHHHHHHHH
Q psy5073 23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYS 51 (115)
Q Consensus 23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~ 51 (115)
..+....+..|.+|+|.|++.+|+.....
T Consensus 326 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~ 354 (356)
T TIGR00901 326 GTVAFVAFLSKLSNPKFGATQMALLSSLS 354 (356)
T ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 45566678999999999999999986654
No 220
>KOG0252|consensus
Probab=88.48 E-value=1.6 Score=32.52 Aligned_cols=91 Identities=16% Similarity=0.208 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHhhccc---chhhhhhcccCChhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHh------------
Q psy5073 7 IPIFSVCTIVAIFRIGIG---PIPWFMMAEIIPLEAKLWSSSLLMCYS---WSCLFLVSKVFMDLIDT------------ 68 (115)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~---~~~~~~~~E~fp~~~R~~~~~~~~~~~---~~~~~~~~~~~~~~~~~------------ 68 (115)
..++.++++.+..+.|.| |+..+..+|.-..+.|+.-.+..-+.. .+.+++.+.+.......
T Consensus 142 ~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld 221 (538)
T KOG0252|consen 142 GVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLD 221 (538)
T ss_pred chhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHH
Confidence 455566777877777775 888889999999999999887763332 34444444444444432
Q ss_pred hchhHHHHHHHHHHHHHHHHHHhhcccCCC
Q psy5073 69 VGSAATYGLLGVICTLGAVFVYTRVPETKN 98 (115)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 98 (115)
.-||..+.+-.+..+ ..+..-..+|||+.
T Consensus 222 ~vWRl~~glg~vpa~-~~ly~Rl~M~Et~~ 250 (538)
T KOG0252|consen 222 GVWRIIFGLGAVPAL-LVLYFRLKMPETAR 250 (538)
T ss_pred HHHHHHHHHHHHHHH-HHHHhhhcCCcchh
Confidence 125544444433333 22444467899854
No 221
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=88.16 E-value=6.3 Score=26.86 Aligned_cols=48 Identities=8% Similarity=0.015 Sum_probs=37.6
Q ss_pred cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q psy5073 24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGS 71 (115)
Q Consensus 24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (115)
+....+.+..-+|++.|.++.=+.-....+.-.+......++.+...|
T Consensus 34 N~iviai~~~~Lp~~qr~ral~~Gl~~A~v~R~~ll~~~s~Ll~l~~~ 81 (254)
T COG0861 34 NAIVIAILASKLPPKQRKKALFIGLAGALVLRIILLASISWLLTLTQP 81 (254)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 455566889999999999999888777777777777777888776554
No 222
>PRK10133 L-fucose transporter; Provisional
Probab=87.55 E-value=5.2 Score=28.99 Aligned_cols=64 Identities=11% Similarity=-0.015 Sum_probs=42.7
Q ss_pred hhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hhHHHHHHHHHHHHH
Q psy5073 20 RIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG-SAATYGLLGVICTLG 85 (115)
Q Consensus 20 ~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 85 (115)
.....|.......|.+|.+ .+++.++... ..+++.+.|.+.+.+.+..| .+..|++..+..+..
T Consensus 361 ~~~i~P~~~s~a~~~~~~~-~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~ 425 (438)
T PRK10133 361 MSIQYPTIFSLGIKNLGQD-TKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI 425 (438)
T ss_pred HHHHHHHHHHHHHcccchh-hccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 3345566667777888764 5677777753 45678888899898888876 666676554443333
No 223
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=87.22 E-value=4.2 Score=29.82 Aligned_cols=42 Identities=12% Similarity=-0.098 Sum_probs=35.1
Q ss_pred hhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5073 27 PWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT 68 (115)
Q Consensus 27 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (115)
......+..|++.|+.+.++......+++.+++.+.+.+.+.
T Consensus 372 ~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 372 STSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred HHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567889999999999999998889888888888887654
No 224
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=86.87 E-value=4.2 Score=29.59 Aligned_cols=61 Identities=11% Similarity=0.073 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5073 8 PIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT 68 (115)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (115)
.++.++++.+..++......+..+.|-.|+++|-.++|.....-.+|-.++..++.++-..
T Consensus 337 ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le~~ 397 (402)
T PF02487_consen 337 IVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLEPW 397 (402)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3444556666666666667777889999999999999999888888777777777666443
No 225
>PTZ00207 hypothetical protein; Provisional
Probab=86.29 E-value=6.9 Score=29.95 Aligned_cols=76 Identities=5% Similarity=-0.073 Sum_probs=50.3
Q ss_pred cccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhh-------------chhHHHHHHHHHHHHHHH
Q psy5073 22 GIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLV-SKVFMDLIDTV-------------GSAATYGLLGVICTLGAV 87 (115)
Q Consensus 22 ~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~ 87 (115)
..++.....++|+|- +.=++=.-+......++..+. -.+.+.+.+.. ..+..|.+.+.++++..+
T Consensus 468 ~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~ 546 (591)
T PTZ00207 468 FMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFI 546 (591)
T ss_pred HhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHH
Confidence 344566678999999 766666666666666555554 34556565432 244688999998888888
Q ss_pred HHHhhcccCCC
Q psy5073 88 FVYTRVPETKN 98 (115)
Q Consensus 88 ~~~~~~pet~~ 98 (115)
......-+||.
T Consensus 547 ~s~~l~~R~r~ 557 (591)
T PTZ00207 547 TSTYVHLQYRR 557 (591)
T ss_pred HHhheeeehHH
Confidence 77666656653
No 226
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=85.56 E-value=6 Score=27.34 Aligned_cols=42 Identities=12% Similarity=-0.060 Sum_probs=33.0
Q ss_pred hhhccc-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5073 29 FMMAEI-IPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG 70 (115)
Q Consensus 29 ~~~~E~-fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (115)
....+. .+++.++...++......++..++|.+.+++.+..|
T Consensus 308 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 308 TLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444 456778888998888888888999999999988776
No 227
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=85.54 E-value=2.3 Score=24.87 Aligned_cols=34 Identities=12% Similarity=-0.083 Sum_probs=22.8
Q ss_pred HhhchhHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q psy5073 67 DTVGSAATYGLLGVICTLGAVFVYTRVPETKNKS 100 (115)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~ 100 (115)
+..+|+.++++...++++...+.+.+.||++-++
T Consensus 55 d~e~we~~~f~~~~~~~v~~~~~~~y~PD~~i~~ 88 (105)
T PF10183_consen 55 DWEGWELPFFFGFSGSLVFGGVFLAYKPDTSIQT 88 (105)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 4567877766655556666666667789987654
No 228
>KOG2563|consensus
Probab=84.83 E-value=2 Score=31.76 Aligned_cols=40 Identities=10% Similarity=-0.076 Sum_probs=34.2
Q ss_pred hhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy5073 30 MMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV 69 (115)
Q Consensus 30 ~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (115)
...-+||+++|+.+..++.+.+-++..++..+.|.++.+.
T Consensus 164 iA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~ 203 (480)
T KOG2563|consen 164 IAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS 203 (480)
T ss_pred HHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence 3566899999999999999999998888888888887654
No 229
>KOG3626|consensus
Probab=84.71 E-value=13 Score=29.38 Aligned_cols=85 Identities=9% Similarity=-0.062 Sum_probs=51.6
Q ss_pred HHHHHHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---h---------------c-hhH
Q psy5073 13 CTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT---V---------------G-SAA 73 (115)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---------------~-~~~ 73 (115)
-++.++......+....|+=|..-.+.-+.-.|+.+.+..++.+++-.++....+. . | |+.
T Consensus 244 q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWl 323 (735)
T KOG3626|consen 244 QLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWL 323 (735)
T ss_pred HHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHH
Confidence 33333333334455555787888888888888888888888777777777766542 1 1 322
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCC
Q psy5073 74 TYGLLGVICTLGAVFVYTRVPETKN 98 (115)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~pet~~ 98 (115)
-|.+.+.+.++..+. +++.|.+..
T Consensus 324 GFLi~g~~~~~~a~p-~f~fPk~lp 347 (735)
T KOG3626|consen 324 GFLICGALLLFSAVP-LFFFPKELP 347 (735)
T ss_pred HHHHHHHHHHHHHHH-HHhCcccCc
Confidence 355555555555444 456666543
No 230
>KOG3626|consensus
Probab=83.32 E-value=1.9 Score=33.66 Aligned_cols=51 Identities=20% Similarity=0.210 Sum_probs=37.0
Q ss_pred HHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Q psy5073 17 AIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSW-SCLFLVSKVFMDLIDT 68 (115)
Q Consensus 17 ~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 68 (115)
+..+.+..|. ..++-+..|+++|..++|+-.+..+ ++.+-+|.+++++++.
T Consensus 598 f~~~~~~~p~-~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG~~ID~ 649 (735)
T KOG3626|consen 598 FIGALGAVPG-MLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGAVIDT 649 (735)
T ss_pred HHHHhccCcc-eEEEEEccCchhchhhhHHHHHHHHHHhcCCchHhhhhhHhh
Confidence 3333333333 3456799999999999999988876 5555677789999875
No 231
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=82.98 E-value=8.4 Score=28.87 Aligned_cols=88 Identities=13% Similarity=0.130 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhhchhHHHHHHHHH
Q psy5073 8 PIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMD------LIDTVGSAATYGLLGVI 81 (115)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 81 (115)
.++...++..+--....|+.-+++..+-|++..+..++........+..+...+.+. ..+.......|+..+..
T Consensus 396 ~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v 475 (498)
T COG3104 396 WLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVV 475 (498)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHH
Confidence 344444445455566677777889999999999999999988777777776666652 23334444577777777
Q ss_pred HHHHHHHHHhhccc
Q psy5073 82 CTLGAVFVYTRVPE 95 (115)
Q Consensus 82 ~~~~~~~~~~~~pe 95 (115)
..+.........|+
T Consensus 476 ~i~~~~~~~~~~~~ 489 (498)
T COG3104 476 AIVIGILLLLLSPK 489 (498)
T ss_pred HHHHHHHHHHhhHH
Confidence 77776665555544
No 232
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=80.96 E-value=12 Score=24.06 Aligned_cols=52 Identities=10% Similarity=-0.090 Sum_probs=36.1
Q ss_pred hhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q psy5073 27 PWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGV 80 (115)
Q Consensus 27 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (115)
..+.+.+..|++.|.++.-+......+.-.+......++.+.. ++...+.+.
T Consensus 17 vi~~~~~~lp~~~r~kal~~Gi~~A~~lR~~~i~~~~~ll~~~--~~i~~igG~ 68 (183)
T PF03741_consen 17 VIAMIFRKLPPEQRRKALFWGIIGAIVLRIIFIFLASWLLSIF--PWILLIGGL 68 (183)
T ss_pred HHHHHHhCCCHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 3445677799999999988887777777777777777777763 234444433
No 233
>KOG1330|consensus
Probab=80.35 E-value=3.5 Score=30.66 Aligned_cols=54 Identities=13% Similarity=0.011 Sum_probs=37.2
Q ss_pred HHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh-hchh
Q psy5073 18 IFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCL-FLVSKVFMDLIDT-VGSA 72 (115)
Q Consensus 18 ~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~ 72 (115)
.....+.+...+ ..|+.|++.|.++.++......+.+ +..|++.+.+.+. .+|+
T Consensus 362 ~~~~~~a~n~~i-~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~ 417 (493)
T KOG1330|consen 362 ISWFNWATNNPI-FLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLRGYK 417 (493)
T ss_pred HHhcccccccce-eeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhhCCC
Confidence 334445555554 6899999999999999987775444 4455577777776 3443
No 234
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=79.98 E-value=9.5 Score=23.68 Aligned_cols=23 Identities=13% Similarity=0.231 Sum_probs=18.2
Q ss_pred hcccCChhhHHHHHHHHHHHHHH
Q psy5073 31 MAEIIPLEAKLWSSSLLMCYSWS 53 (115)
Q Consensus 31 ~~E~fp~~~R~~~~~~~~~~~~~ 53 (115)
+.|+||+..|....+........
T Consensus 58 LkDm~Pp~~R~~i~~~~s~t~s~ 80 (145)
T TIGR00986 58 LKDIVPPTTRGWIYHKYSTTTNF 80 (145)
T ss_pred HHhhCCHHHHHHHHHHHHHHHHH
Confidence 67999999999988777655443
No 235
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=79.53 E-value=14 Score=23.80 Aligned_cols=60 Identities=18% Similarity=0.162 Sum_probs=39.1
Q ss_pred cccchhhhhhcccCCh-hhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh--hchhHHHHHHHHH
Q psy5073 22 GIGPIPWFMMAEIIPL-EAKLWSSSLLMC-YSWSCLFLVSKVFMDLIDT--VGSAATYGLLGVI 81 (115)
Q Consensus 22 ~~~~~~~~~~~E~fp~-~~R~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 81 (115)
...+....+++|.+|. +.|+...+.... ....+..+++.+...+... .+|++.+......
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (338)
T COG0477 110 GLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALL 173 (338)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3456667789999998 778888888877 3555666666555555443 5677654444433
No 236
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=79.20 E-value=22 Score=25.88 Aligned_cols=63 Identities=16% Similarity=0.027 Sum_probs=41.9
Q ss_pred hhcccC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHHHhh
Q psy5073 30 MMAEII-PLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG-SAATYGLLGVICTLGAVFVYTR 92 (115)
Q Consensus 30 ~~~E~f-p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 92 (115)
.+.+.. .+++-++-.|.....+.+.++.+|++.+++.+..| |+.....+....++..+..+..
T Consensus 320 li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~a 384 (395)
T COG2807 320 LILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLRA 384 (395)
T ss_pred HHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhhc
Confidence 444444 45555566667777788999999999999999864 6555555555555554444433
No 237
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=74.18 E-value=4.8 Score=30.85 Aligned_cols=50 Identities=20% Similarity=0.150 Sum_probs=37.6
Q ss_pred HHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Q psy5073 18 IFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWS-CLFLVSKVFMDLIDT 68 (115)
Q Consensus 18 ~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 68 (115)
+...+..|.. ..+=+..|+++|+.++|+-....++ +..-+|.+++.+++.
T Consensus 531 ~~~~~~~p~~-~i~lR~V~~~~rs~alg~~~~~~rllg~iP~pi~fG~~iD~ 581 (633)
T TIGR00805 531 IAFITAVPLY-MVLLRVVNPEEKSLAIGLQWLCMRVFATIPAPILFGLLIDV 581 (633)
T ss_pred HHHhccCchh-eEEeeccCcccchHHhhHHHHHHHHhcCCChhHHHhhhhhc
Confidence 3344444544 3456889999999999999888875 457788889999875
No 238
>KOG2563|consensus
Probab=73.75 E-value=2.1 Score=31.62 Aligned_cols=83 Identities=24% Similarity=0.224 Sum_probs=56.0
Q ss_pred HHHHHHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----hhHHHHHHHHHHHHHHHH
Q psy5073 13 CTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG----SAATYGLLGVICTLGAVF 88 (115)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 88 (115)
+...+++..+.-|....+-.|..-|..-++..|+....+.+.+++...+-....+..+ +...-+.......+...+
T Consensus 366 ~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~l 445 (480)
T KOG2563|consen 366 CGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAIL 445 (480)
T ss_pred HHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHH
Confidence 3344566677778888888898877778888899988888888888888888877766 432233444444444445
Q ss_pred HHhhccc
Q psy5073 89 VYTRVPE 95 (115)
Q Consensus 89 ~~~~~pe 95 (115)
..++-|+
T Consensus 446 va~~r~~ 452 (480)
T KOG2563|consen 446 VAFFRPD 452 (480)
T ss_pred Hhhhhhh
Confidence 4444344
No 239
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=73.12 E-value=4.8 Score=29.35 Aligned_cols=52 Identities=4% Similarity=-0.063 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhc
Q psy5073 41 LWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRV 93 (115)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (115)
+.-.|=.++.+.++.++++.+.+.+.+. +.+..|++.....++..++..+.-
T Consensus 137 ~feYG~~R~wGSig~ai~s~~~G~L~~i-~p~~~fwi~s~~~~il~lll~~~~ 188 (412)
T PF01306_consen 137 GFEYGRARMWGSIGFAIASLLAGILFNI-NPNIIFWIASAAAIILLLLLLLLK 188 (412)
T ss_dssp SS-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHSS-
T ss_pred cCCcchHHHHhhHHHHHHHHHhheeeee-CccHHHHHHHHHHHHHHHHHHHcC
Confidence 3345556888889999999999998875 445677766655555544444333
No 240
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=71.03 E-value=43 Score=25.35 Aligned_cols=43 Identities=21% Similarity=0.132 Sum_probs=38.1
Q ss_pred hhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5073 26 IPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT 68 (115)
Q Consensus 26 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (115)
+.|....|++..++-.+-.++....++++..++..+..++.+.
T Consensus 168 lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 168 LFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred HHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6778899999999999999999999999888888888887663
No 241
>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.
Probab=68.88 E-value=31 Score=22.92 Aligned_cols=40 Identities=13% Similarity=0.032 Sum_probs=31.6
Q ss_pred hhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5073 29 FMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT 68 (115)
Q Consensus 29 ~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (115)
+.+.+-.|++.|.++.-+......+.-.+......++.+.
T Consensus 16 a~~~~~LP~~~r~~al~~Gi~gAivlR~i~i~~~~~Ll~~ 55 (215)
T TIGR03716 16 AVMVKHLPEKQRKKALFYGLIGAYVFRFIALFLASFLIKF 55 (215)
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678999999999888888777777777777887764
No 242
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=66.42 E-value=29 Score=21.69 Aligned_cols=38 Identities=8% Similarity=-0.070 Sum_probs=21.0
Q ss_pred ccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHH
Q psy5073 23 IGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSK 60 (115)
Q Consensus 23 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~ 60 (115)
.+.....++.|....+.|++-.++.......+..++..
T Consensus 106 lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~ 143 (156)
T PF05978_consen 106 LWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNL 143 (156)
T ss_pred hhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33444456666666666666666665555444444433
No 243
>KOG3098|consensus
Probab=65.96 E-value=54 Score=24.53 Aligned_cols=47 Identities=11% Similarity=-0.007 Sum_probs=32.4
Q ss_pred HHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5073 18 IFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDL 65 (115)
Q Consensus 18 ~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (115)
+.-......-+.+++..+ ++.|.++-++...-..+...+..+..+..
T Consensus 365 ~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~ 411 (461)
T KOG3098|consen 365 FGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYL 411 (461)
T ss_pred hHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 334445666667788888 78899999988777766666655555544
No 244
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=65.52 E-value=29 Score=21.37 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=18.9
Q ss_pred hcccCChhhHHHHHHHHHHHHHHH
Q psy5073 31 MAEIIPLEAKLWSSSLLMCYSWSC 54 (115)
Q Consensus 31 ~~E~fp~~~R~~~~~~~~~~~~~~ 54 (115)
+.|++|+..|....+......+..
T Consensus 60 Lkdi~P~~~R~~i~~~~~~~~~~~ 83 (137)
T PF04281_consen 60 LKDIFPPSVRNWISSTVSTTSSAV 83 (137)
T ss_pred HhccCCHHHHHHHHHHHHHHHHHH
Confidence 579999999999888776554443
No 245
>PF12832 MFS_1_like: MFS_1 like family
Probab=64.71 E-value=21 Score=19.38 Aligned_cols=40 Identities=18% Similarity=0.060 Sum_probs=30.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHH
Q psy5073 37 LEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYG 76 (115)
Q Consensus 37 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (115)
...-+.-+|+......+...+++.+.+.+.+..+-+....
T Consensus 30 ~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l 69 (77)
T PF12832_consen 30 LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVIL 69 (77)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHH
Confidence 3444566777888888999999999999999887654433
No 246
>KOG1237|consensus
Probab=64.01 E-value=64 Score=24.76 Aligned_cols=40 Identities=13% Similarity=-0.005 Sum_probs=33.7
Q ss_pred hhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy5073 30 MMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV 69 (115)
Q Consensus 30 ~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (115)
+.-+..|++.|+.++++......++..+...+........
T Consensus 482 FfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~t 521 (571)
T KOG1237|consen 482 FFYSQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQFST 521 (571)
T ss_pred HhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4568899999999999999999999999888886665544
No 247
>PRK03612 spermidine synthase; Provisional
Probab=63.53 E-value=62 Score=24.43 Aligned_cols=49 Identities=16% Similarity=0.144 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchhHHHHHHHHHHHHHHHHH
Q psy5073 41 LWSSSLLMCYSWSCLFLVSKVFMDLID-TVGSAATYGLLGVICTLGAVFV 89 (115)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 89 (115)
+...|-.+..+.+|+.+++.+.+++.- ..|...+..+.+.++++..++.
T Consensus 144 g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~ 193 (521)
T PRK03612 144 GHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVF 193 (521)
T ss_pred hhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 456777888889999999999777755 5776656666666665555443
No 248
>KOG2615|consensus
Probab=62.86 E-value=18 Score=26.59 Aligned_cols=44 Identities=5% Similarity=-0.173 Sum_probs=37.8
Q ss_pred chhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5073 25 PIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT 68 (115)
Q Consensus 25 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (115)
+....++.-..|.+.|++..|+....+.++-+++|...+.+..+
T Consensus 371 t~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~W 414 (451)
T KOG2615|consen 371 TCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSW 414 (451)
T ss_pred HHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEE
Confidence 44445788889999999999999999999999999999777654
No 249
>KOG3764|consensus
Probab=61.49 E-value=24 Score=26.11 Aligned_cols=52 Identities=8% Similarity=-0.031 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH
Q psy5073 39 AKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVY 90 (115)
Q Consensus 39 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (115)
+-++..++......++.+++|.+++.+++..|..|.-.+.+..+.+...+..
T Consensus 400 vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~ 451 (464)
T KOG3764|consen 400 VYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLL 451 (464)
T ss_pred eeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHH
Confidence 4466777777777889999999999999999988877777777766655443
No 250
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=61.14 E-value=60 Score=23.42 Aligned_cols=67 Identities=21% Similarity=0.085 Sum_probs=38.9
Q ss_pred ccCChhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhc--hhHHHHHHHHHHHHHHHHHHhhcccCCCC
Q psy5073 33 EIIPLEAKLWSSSLLM-CYSWSCLFLVSKVFMDLIDTVG--SAATYGLLGVICTLGAVFVYTRVPETKNK 99 (115)
Q Consensus 33 E~fp~~~R~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~pet~~~ 99 (115)
.-||.+..+.-.+... ..+.+.++.+..+...+.+..+ ..+.|..-.....+..+++...-+|..+.
T Consensus 153 ~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~ 222 (354)
T PF05631_consen 153 RGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGD 222 (354)
T ss_pred cCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCC
Confidence 3456665555444444 2334445555555666666554 35567777666777777776677776543
No 251
>KOG2533|consensus
Probab=60.79 E-value=14 Score=27.68 Aligned_cols=53 Identities=13% Similarity=0.039 Sum_probs=27.8
Q ss_pred hhhhhcccCChhhHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHhhchhHHHHHHH
Q psy5073 27 PWFMMAEIIPLEAKLWSSSLL-MCYSWSCLFLVSKVFMDL-IDTVGSAATYGLLG 79 (115)
Q Consensus 27 ~~~~~~E~fp~~~R~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 79 (115)
...-.++....+.|....... .......+.+.+.+.... ....+|.++|....
T Consensus 388 ~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~~ 442 (495)
T KOG2533|consen 388 ALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYMLV 442 (495)
T ss_pred HHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHHH
Confidence 333456666666655555444 444455555555554433 33357777773333
No 252
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=60.19 E-value=70 Score=23.94 Aligned_cols=50 Identities=6% Similarity=-0.115 Sum_probs=34.3
Q ss_pred hhhcccCCh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHH
Q psy5073 29 FMMAEIIPL-EAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLL 78 (115)
Q Consensus 29 ~~~~E~fp~-~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (115)
..+.|.+|+ +.|..-+|-......+...+...+.+.+....||...-.+.
T Consensus 289 ~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~ 339 (472)
T TIGR00769 289 SKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALIT 339 (472)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 467888865 46677777776666666666666668899999997544333
No 253
>PF04647 AgrB: Accessory gene regulator B; InterPro: IPR006741 The accessory gene regulator (agr) of Staphylococcus aureus is the central regulatory system that controls the gene expression for a large set of virulence factors. The arg locus consists of two transcripts: RNAII and RNAIII. RNAII encodes four genes (agrA, B, C, and D) whose gene products assemble a quorum sensing system. At low cell density, the agr genes are continuously expressed at basal levels. A signal molecule, autoinducing peptide (AIP), produced and secreted by the bacteria, accumulates outside of the cells. When the cell density increases and the AIP concentration reaches a threshold, it activates the agr response, i.e. activation of secreted protein gene expression and subsequent repression of cell wall-associated protein genes. AgrB and AgrD are essential for the production of the autoinducing peptide which functions as a signal for quorum sensing. AgrB is a transmembrane protein [] involved in the proteolytic processing of AgrD, and may have both proteolytic and transporter activities, facilitating the export of the processed AgrD peptide []. ; GO: 0016020 membrane
Probab=59.62 E-value=34 Score=21.65 Aligned_cols=22 Identities=18% Similarity=0.404 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHhhccc-CCCCCH
Q psy5073 80 VICTLGAVFVYTRVPE-TKNKSF 101 (115)
Q Consensus 80 ~~~~~~~~~~~~~~pe-t~~~~~ 101 (115)
.+..+.......+.|. ++++++
T Consensus 106 ~~~~~~~~~i~~~aPv~~~~kpl 128 (185)
T PF04647_consen 106 ILFIISFIIIIIYAPVDTPNKPL 128 (185)
T ss_pred HHHHHHHHHHHHhcccccccCcC
Confidence 3445555566667775 455555
No 254
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=59.59 E-value=4.8 Score=24.28 Aligned_cols=13 Identities=8% Similarity=-0.151 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q psy5073 73 ATYGLLGVICTLG 85 (115)
Q Consensus 73 ~~~~~~~~~~~~~ 85 (115)
|++++..++.+++
T Consensus 2 W~l~~iii~~i~l 14 (130)
T PF12273_consen 2 WVLFAIIIVAILL 14 (130)
T ss_pred eeeHHHHHHHHHH
Confidence 4444333333333
No 255
>smart00793 AgrB Accessory gene regulator B. The accessory gene regulator (agr) of Staphylococcus aureus is the central regulatory system that controls the gene expression for a large set of virulence factors. The arg locus consists of two transcripts: RNAII and RNAIII. RNAII encodes four genes (agrA, B, C, and D) whose gene products assemble a quorum sensing system. At low cell density, the agr genes are continuously expressed at basal levels. A signal molecule, autoinducing peptide (AIP), produced and secreted by the bacteria, accumulates outside of the cells. When the cell density increases and the AIP concentration reaches a threshold, it activates the agr response, i.e. activation of secreted protein gene expression and subsequent repression of cell wall-associated protein genes. AgrB and AgrD are essential for the production of the autoinducing peptide which functions as a signal for quorum sensing. AgrB is a transmembrane protein PUBMED:11195102. AgrB is involved in the proteolyt
Probab=59.43 E-value=38 Score=21.73 Aligned_cols=20 Identities=25% Similarity=0.570 Sum_probs=11.6
Q ss_pred HHHHHHHHHhhccc-CCCCCH
Q psy5073 82 CTLGAVFVYTRVPE-TKNKSF 101 (115)
Q Consensus 82 ~~~~~~~~~~~~pe-t~~~~~ 101 (115)
.++.....+.+.|- ++++++
T Consensus 108 ~i~s~~~i~~~APv~~~~kpi 128 (184)
T smart00793 108 FLIGLVLIYIYAPADTEKQPV 128 (184)
T ss_pred HHHHHHHHHhcCCcccccCCC
Confidence 44455566678885 455543
No 256
>KOG2325|consensus
Probab=57.92 E-value=2.6 Score=31.37 Aligned_cols=64 Identities=6% Similarity=-0.064 Sum_probs=51.0
Q ss_pred hhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH
Q psy5073 27 PWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVY 90 (115)
Q Consensus 27 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (115)
..+..+|+..++..++.+++.......+..++|.+...+....|.++...+.++..++...++.
T Consensus 409 ~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~~ 472 (488)
T KOG2325|consen 409 LDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALWI 472 (488)
T ss_pred HHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHHH
Confidence 3457799999999999999999999999999999999999988887766666555554444443
No 257
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=57.71 E-value=1.9 Score=32.46 Aligned_cols=43 Identities=7% Similarity=-0.170 Sum_probs=0.0
Q ss_pred cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5073 24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLI 66 (115)
Q Consensus 24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (115)
.++..+|+=|..+++.-+...|+.+....++..++-.+++...
T Consensus 159 ~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L 201 (539)
T PF03137_consen 159 YTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCL 201 (539)
T ss_dssp -------------------------------------------
T ss_pred ccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHH
Confidence 4555568889999998888888888877777666655554443
No 258
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=57.69 E-value=90 Score=24.41 Aligned_cols=58 Identities=12% Similarity=-0.044 Sum_probs=38.7
Q ss_pred hhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHH
Q psy5073 30 MMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVF 88 (115)
Q Consensus 30 ~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (115)
+.....|++.|+.+.++......++..+...+...-.....| .-|..++.++++..++
T Consensus 589 ~~~~~~p~~mks~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 646 (654)
T TIGR00926 589 FSYSQAPPNMKSVLQALWLLTVAIGNLIVVVIAEFENFSVQA-AEFFLFASLMLVVMAI 646 (654)
T ss_pred hhHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHH-HHHHHHHHHHHHHHHH
Confidence 445778999999999999888888777776665544333333 3456665555554444
No 259
>KOG1237|consensus
Probab=55.97 E-value=48 Score=25.43 Aligned_cols=68 Identities=18% Similarity=0.122 Sum_probs=45.5
Q ss_pred hcccchhhhhhcccCChhhH----H--HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHH
Q psy5073 21 IGIGPIPWFMMAEIIPLEAK----L--WSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVF 88 (115)
Q Consensus 21 ~~~~~~~~~~~~E~fp~~~R----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (115)
.+.-|....+-+|.|+.+.| . +...+.+.....+..++.....++.+..+|.+-|.+....+.+..++
T Consensus 167 gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~i 240 (571)
T KOG1237|consen 167 GGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILI 240 (571)
T ss_pred CCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHH
Confidence 34456666788999983222 2 44555566666777777777777777889988888777766666544
No 260
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=54.18 E-value=55 Score=23.04 Aligned_cols=21 Identities=14% Similarity=-0.167 Sum_probs=9.5
Q ss_pred HHHHHHHHhhchhHHHHHHHH
Q psy5073 60 KVFMDLIDTVGSAATYGLLGV 80 (115)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~ 80 (115)
....+-.+...+.|.....++
T Consensus 163 v~g~~yiqt~~~~~~~ll~sl 183 (303)
T COG1575 163 VLGAYYIQTGRLSWAILLPSL 183 (303)
T ss_pred HHHHHHHhcccchHHHHHHHH
Confidence 334444455555444444433
No 261
>KOG3810|consensus
Probab=51.72 E-value=80 Score=23.22 Aligned_cols=71 Identities=13% Similarity=-0.017 Sum_probs=44.5
Q ss_pred hhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHH-HHHHHHHHHHHHHHHHhhcccCC
Q psy5073 27 PWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAAT-YGLLGVICTLGAVFVYTRVPETK 97 (115)
Q Consensus 27 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~pet~ 97 (115)
.++++-+..+++++-+..|.+..+.-.+.+.+......+++...+... .-...........+..+++|..+
T Consensus 115 YysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~ 186 (433)
T KOG3810|consen 115 YYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVK 186 (433)
T ss_pred hhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCc
Confidence 344666777999999999999999888888887777777665443321 11112222223334445666554
No 262
>PF13347 MFS_2: MFS/sugar transport protein
Probab=51.15 E-value=89 Score=22.38 Aligned_cols=51 Identities=22% Similarity=0.179 Sum_probs=35.9
Q ss_pred hhcccchhhhhhcccCChhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5073 20 RIGIGPIPWFMMAEIIPLEA-------KLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG 70 (115)
Q Consensus 20 ~~~~~~~~~~~~~E~fp~~~-------R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (115)
.......++.+++|..+.++ .+.-.|+......++.++++.+.+.+.+..|
T Consensus 329 ~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~G 386 (428)
T PF13347_consen 329 YGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVG 386 (428)
T ss_pred hcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence 34455778889999998543 3555666666667888888888887776543
No 263
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=49.50 E-value=46 Score=24.18 Aligned_cols=63 Identities=13% Similarity=-0.033 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHH----HHhhcccCCCCCHHHHHHHH
Q psy5073 45 SLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVF----VYTRVPETKNKSFEAIQAEL 108 (115)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~pet~~~~~~~~~~~~ 108 (115)
-+.....++ ++.+|.++|.+...+||-..+.+..+-+.+.... .....-+.+++++.|+.++.
T Consensus 57 lfghhf~sI-AGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR~~G~Si~~i~~~~ 123 (376)
T PF02554_consen 57 LFGHHFASI-AGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASVRHKGKSIGEIAGKY 123 (376)
T ss_pred hhHHHHHHH-hccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 333444344 6788999999988899864443333333333222 22334456899998876554
No 264
>PRK01100 putative accessory gene regulator protein; Provisional
Probab=48.56 E-value=73 Score=20.97 Aligned_cols=19 Identities=11% Similarity=0.183 Sum_probs=10.9
Q ss_pred HHHHHHHHhhccc-CCCCCH
Q psy5073 83 TLGAVFVYTRVPE-TKNKSF 101 (115)
Q Consensus 83 ~~~~~~~~~~~pe-t~~~~~ 101 (115)
....+..+.+.|. |+.+++
T Consensus 121 ~~s~iii~~yAP~dt~nkPi 140 (210)
T PRK01100 121 GFILLNLFLYAPADTESLPL 140 (210)
T ss_pred HHHHHHHHhcCCcCCccCCC
Confidence 3344555678885 555553
No 265
>KOG4473|consensus
Probab=47.33 E-value=86 Score=21.12 Aligned_cols=37 Identities=11% Similarity=0.071 Sum_probs=26.8
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q psy5073 36 PLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSA 72 (115)
Q Consensus 36 p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (115)
|++.|+.=.++........+++.|++...+++....+
T Consensus 158 p~~~~p~qaA~asa~afslGg~vPLl~~~fi~~~~~~ 194 (247)
T KOG4473|consen 158 PAENRPLQAAAASALAFSLGGIVPLLPAAFVKDYKVR 194 (247)
T ss_pred CCCCchHHHHHHHHHHHHhccHHhhhHHHhhhhhhhh
Confidence 5556777777777777777888888877777776654
No 266
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=46.86 E-value=6.4 Score=29.66 Aligned_cols=50 Identities=12% Similarity=0.119 Sum_probs=0.0
Q ss_pred hhcccchhhhhhcccCChhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhc
Q psy5073 20 RIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSW-SCLFLVSKVFMDLIDTVG 70 (115)
Q Consensus 20 ~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 70 (115)
..+..|... ..=+..|++.|+.++|+-....+ ++..-+|.+++.+.+...
T Consensus 466 ~~~~~p~~~-i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~tC 516 (539)
T PF03137_consen 466 FMSQVPSTL-ITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDSTC 516 (539)
T ss_dssp ----------------------------------------------------
T ss_pred Hhcccchhe-eeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhhh
Confidence 333344443 35589999999999999988876 555778888998888643
No 267
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=45.71 E-value=44 Score=24.47 Aligned_cols=73 Identities=14% Similarity=0.181 Sum_probs=36.1
Q ss_pred HHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--hhHHHHHHHHHHHHHHHHHHhhcc
Q psy5073 17 AIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG--SAATYGLLGVICTLGAVFVYTRVP 94 (115)
Q Consensus 17 ~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p 94 (115)
...+.+.|-+...-.+..||.. .++-...+...++.+++.....+.+ .+ .+.++.....+.++..+..++.+|
T Consensus 122 as~ssg~GE~tfL~lt~~y~~~----~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~ 196 (402)
T PF02487_consen 122 ASLSSGLGEVTFLSLTHFYGKS----SLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLP 196 (402)
T ss_pred HhhhhhhhHHHHHHHHHhcCcc----ccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445566666666566677643 2333333333445555555544444 44 344566665555444433344444
No 268
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=45.27 E-value=30 Score=26.48 Aligned_cols=66 Identities=12% Similarity=-0.012 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH----HHHhhcccCCCCCHHHHHHHHhc
Q psy5073 44 SSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAV----FVYTRVPETKNKSFEAIQAELAM 110 (115)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~pet~~~~~~~~~~~~~~ 110 (115)
.-+..-..++ ++.+|..+|.+....||...+.....-+++... ++.+..-+.+|+++.|+.++.-.
T Consensus 56 vlfGhHFaaI-AGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~~G~Si~~ia~~~lG 125 (575)
T COG1966 56 VLFGHHFASI-AGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVRHGGKSIGEIAGKYLG 125 (575)
T ss_pred hhhHHHHHHH-hccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeeccCCccHHHHHHHHhh
Confidence 4444444444 788999999999999975443333322333322 22234456688999888665433
No 269
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=43.30 E-value=1.1e+02 Score=21.02 Aligned_cols=38 Identities=16% Similarity=0.012 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHH
Q psy5073 41 LWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLL 78 (115)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (115)
....++......++..+...+.+++.+..|.+..+...
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~ 73 (366)
T TIGR00886 36 TAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLS 73 (366)
T ss_pred HHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 33456666666777788888888888887766554433
No 270
>TIGR03718 R_switched_Alx integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.
Probab=42.57 E-value=1.2e+02 Score=21.41 Aligned_cols=46 Identities=11% Similarity=-0.016 Sum_probs=35.2
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q psy5073 34 IIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVI 81 (115)
Q Consensus 34 ~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (115)
-.|++.|.++.-+.....-+.-++....+.++.+...| .+.+++..
T Consensus 91 ~vP~~~q~rvL~~Gi~gAlvlR~i~i~~g~~Li~~f~w--i~~ifG~f 136 (302)
T TIGR03718 91 AVPREYQHRVLFWGILGALVLRAIFIALGAALIEQFHW--VLYIFGAF 136 (302)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--HHHHHHHH
Confidence 66999999999888888777778888888888876554 56655544
No 271
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=41.69 E-value=99 Score=20.22 Aligned_cols=65 Identities=9% Similarity=0.075 Sum_probs=41.0
Q ss_pred cchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhH-HHHHHHHHHHHHHHHH
Q psy5073 24 GPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAA-TYGLLGVICTLGAVFV 89 (115)
Q Consensus 24 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 89 (115)
.|.. .-..+-+++++|.+-.--......+...+....+.++.+.+|... .|-+-+.+.++...+-
T Consensus 21 ip~f-~~lt~~~~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL~~fgIsl~af~IaGGiiL~~ia~~ 86 (203)
T PF01914_consen 21 IPIF-LSLTKGMSPKERRRIARRASIIAFIILLIFAFFGQLILNFFGISLPAFRIAGGIILFLIALE 86 (203)
T ss_pred HHHH-HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 3443 346677788887777766666666666777778888888877542 4555555444443343
No 272
>KOG2816|consensus
Probab=41.53 E-value=1.5e+02 Score=22.18 Aligned_cols=51 Identities=4% Similarity=-0.083 Sum_probs=42.5
Q ss_pred HHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5073 18 IFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDT 68 (115)
Q Consensus 18 ~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (115)
.++....|...+..+-+-.++.+++.+++....-.+.+++.|.+...+...
T Consensus 342 ~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~ 392 (463)
T KOG2816|consen 342 ALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFAL 392 (463)
T ss_pred HhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 344455667777888999999999999999999999999999998887654
No 273
>PF11511 RhodobacterPufX: Intrinsic membrane protein PufX; InterPro: IPR020169 PufX organises RC-LH1, the photosynthesis reaction centre-light harvesting complex 1 core complex of Rhodobacter sphaeroides []. It also facilitates the exchange of quinol for quinone between the reaction centre and cytochrome bc(1) complexes. In organic solvent, PufX contains two hydrophobic helices which are flanked by unstructured regions and connected by a helical bend [].; PDB: 2DW3_A 2ITA_A 2NRG_A.
Probab=41.26 E-value=58 Score=17.44 Aligned_cols=34 Identities=21% Similarity=0.209 Sum_probs=19.3
Q ss_pred HHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCC
Q psy5073 65 LIDTVGSAATYGLLGVICTLGAVFVYTRVPETKN 98 (115)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~ 98 (115)
+.+--+|..++++...+.++...++-..+||.+.
T Consensus 24 MlkGag~Aav~~~~~~~~l~~~~~iG~~LPe~s~ 57 (67)
T PF11511_consen 24 MLKGAGYAAVFFLGLWFLLVALYFIGLLLPERSR 57 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSTTTCS
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHHHHhCchhcc
Confidence 3444455555555544555555566678899644
No 274
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=40.58 E-value=71 Score=19.58 Aligned_cols=26 Identities=8% Similarity=0.105 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCH
Q psy5073 75 YGLLGVICTLGAVFVYTRVPETKNKSF 101 (115)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~pet~~~~~ 101 (115)
..+.....++ .++..+++..+..++-
T Consensus 43 LviNt~ttIi-tFlmvfLIQn~q~Rd~ 68 (132)
T PF04120_consen 43 LVINTATTII-TFLMVFLIQNTQNRDT 68 (132)
T ss_pred HHHccHHHHH-HHHHHHHHHhhhhhHH
Confidence 3444444444 3444456666655553
No 275
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=39.32 E-value=1.2e+02 Score=21.89 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=18.5
Q ss_pred HHHHhhcccCCCCCHHHHHHHHhccc
Q psy5073 87 VFVYTRVPETKNKSFEAIQAELAMGY 112 (115)
Q Consensus 87 ~~~~~~~pet~~~~~~~~~~~~~~~~ 112 (115)
.+..++.|+.++...+++.+..+++.
T Consensus 53 ~l~~~~~p~~~g~G~~~v~~~l~~~~ 78 (402)
T cd01031 53 WLVKKFAPEAKGSGIPQVEGVLAGLL 78 (402)
T ss_pred HHHHhcCCccCCCCHHHHHHHHcCCC
Confidence 44445689999988888877776543
No 276
>KOG3880|consensus
Probab=37.72 E-value=57 Score=23.60 Aligned_cols=61 Identities=8% Similarity=0.052 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5073 7 IPIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID 67 (115)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (115)
..+..+.++-+..+++.....+--+.+-.+++.|-.+++...+.-.++-.++..+...+.+
T Consensus 343 ~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalplh~ 403 (409)
T KOG3880|consen 343 WIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPLHN 403 (409)
T ss_pred HHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccchh
Confidence 3444555666666655555555567788899999999999877777776666666555433
No 277
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=37.57 E-value=42 Score=23.16 Aligned_cols=26 Identities=0% Similarity=-0.150 Sum_probs=15.8
Q ss_pred hchhHHHHHHHHHHHHHHHHHHhhcc
Q psy5073 69 VGSAATYGLLGVICTLGAVFVYTRVP 94 (115)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~p 94 (115)
.+|++++.+.+.+.++-.++..++-.
T Consensus 38 ~~W~~I~si~~lL~~IpLIly~ifGk 63 (267)
T PF07672_consen 38 NNWQWILSIFILLIFIPLILYIIFGK 63 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45887777777666555555444433
No 278
>COG3817 Predicted membrane protein [Function unknown]
Probab=37.38 E-value=1.1e+02 Score=21.22 Aligned_cols=41 Identities=15% Similarity=0.198 Sum_probs=30.6
Q ss_pred HHHHHHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHH
Q psy5073 13 CTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWS 53 (115)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~ 53 (115)
.+-..+...|.|-...-+++|..|.+.|-.++........+
T Consensus 176 aLG~vFa~aGvG~~ia~L~~~~i~~DsrfiaV~~Y~vgMal 216 (313)
T COG3817 176 ALGAVFASAGVGDVIAHLISEIIPADSRFIAVAAYCVGMAL 216 (313)
T ss_pred HHHHHHHhcchhHHHHHHHHHHcccchhHHHHHHHHHHHHH
Confidence 33444666778888778999999999999988777555443
No 279
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=36.82 E-value=1e+02 Score=22.15 Aligned_cols=19 Identities=16% Similarity=0.037 Sum_probs=13.8
Q ss_pred ccCChhhHHHHHHHHHHHH
Q psy5073 33 EIIPLEAKLWSSSLLMCYS 51 (115)
Q Consensus 33 E~fp~~~R~~~~~~~~~~~ 51 (115)
-.|-..+|..++++.+...
T Consensus 88 ltfGl~mryLGvSLG~sI~ 106 (344)
T PF06379_consen 88 LTFGLAMRYLGVSLGQSIA 106 (344)
T ss_pred hhHhHHHHHHhHHHHHHHH
Confidence 3455678999998886665
No 280
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=34.94 E-value=1.3e+02 Score=22.35 Aligned_cols=57 Identities=9% Similarity=-0.049 Sum_probs=38.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhh
Q psy5073 36 PLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTR 92 (115)
Q Consensus 36 p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (115)
+++.+.+-.+...-.=-....++|.+.+.+.+..+......+.+..+++....-+++
T Consensus 143 ~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~ 199 (432)
T PF06963_consen 143 DPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFL 199 (432)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444457788999999999887787777777777777776655443
No 281
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=34.76 E-value=1.9e+02 Score=21.38 Aligned_cols=45 Identities=9% Similarity=0.076 Sum_probs=30.3
Q ss_pred HHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5073 18 IFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVF 62 (115)
Q Consensus 18 ~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~ 62 (115)
+.++-.++....+.++..++++|-.+-.+....-.+|-..+..+.
T Consensus 384 ltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~ 428 (437)
T TIGR00939 384 FSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS 428 (437)
T ss_pred HhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566777888999999998887777666555555555443
No 282
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=34.67 E-value=52 Score=15.27 Aligned_cols=24 Identities=8% Similarity=0.235 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCC
Q psy5073 76 GLLGVICTLGAVFVYTRVPETKNK 99 (115)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~pet~~~ 99 (115)
+++.++..+..++++-++++..++
T Consensus 7 ~Vy~vV~ffv~LFifGflsnDp~R 30 (36)
T PF02532_consen 7 FVYTVVIFFVSLFIFGFLSNDPGR 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred eehhhHHHHHHHHhccccCCCCCC
Confidence 345555555556666666654433
No 283
>COG4512 AgrB Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]
Probab=34.07 E-value=1.3e+02 Score=19.60 Aligned_cols=19 Identities=16% Similarity=0.609 Sum_probs=11.7
Q ss_pred HHHHHHHHhhcc-cCCCCCH
Q psy5073 83 TLGAVFVYTRVP-ETKNKSF 101 (115)
Q Consensus 83 ~~~~~~~~~~~p-et~~~~~ 101 (115)
....+..+.+.| +|+..++
T Consensus 114 iiglL~i~~yAPa~teahpl 133 (198)
T COG4512 114 IIGLLLIFKYAPADTEAHPL 133 (198)
T ss_pred HHHHHHHHhcCccccccCCC
Confidence 344455667889 6766554
No 284
>COG3817 Predicted membrane protein [Function unknown]
Probab=31.70 E-value=1.8e+02 Score=20.25 Aligned_cols=77 Identities=18% Similarity=0.115 Sum_probs=41.6
Q ss_pred hcccCChhhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHH
Q psy5073 31 MAEIIPLEAKLWSSSLL------MCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGVICTLGAVFVYTRVPETKNKSFEAI 104 (115)
Q Consensus 31 ~~E~fp~~~R~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~~~ 104 (115)
..|.-|.+.+-++..+. .....+...+++.+++.+.....-+.++.-.++-+++..+...+..+++..+.++|-
T Consensus 78 ~~~~~~e~re~~A~rlgnrlfiPal~ip~~tlig~~lf~~~s~~~pknatl~al~i~~i~a~vla~~mt~~~p~~~~~E~ 157 (313)
T COG3817 78 LPELSPEEREKSANRLGNRLFIPALLIPVLTLIGSLLFPDLSFFDPKNATLMALGIAAIVATVLACVMTKQTPKAAVQEA 157 (313)
T ss_pred CCCCCHHHHHHHHHHhcCEeehHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHHhccChhhHHHHH
Confidence 46777777666665554 222233333344444443322122456766777677777776666677766666554
Q ss_pred HHH
Q psy5073 105 QAE 107 (115)
Q Consensus 105 ~~~ 107 (115)
.+.
T Consensus 158 ~rl 160 (313)
T COG3817 158 RRL 160 (313)
T ss_pred HHH
Confidence 433
No 285
>PF10997 DUF2837: Protein of unknown function (DUF2837); InterPro: IPR021260 This bacterial family of proteins has no known function.
Probab=31.16 E-value=1.8e+02 Score=20.04 Aligned_cols=55 Identities=13% Similarity=0.140 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhhcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5073 8 PIFSVCTIVAIFRIGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDL 65 (115)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (115)
.++.=.+....+..|. ....|.+-++|. .|.++...+...+.+...+...+..+-
T Consensus 148 ~l~lN~~vtaiyTvGV--LsalYA~~L~P~-~r~Ta~~lSgiING~ATIllt~fiDP~ 202 (254)
T PF10997_consen 148 LLLLNIFVTAIYTVGV--LSALYAGLLVPE-YRTTASQLSGIINGIATILLTIFIDPK 202 (254)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHhCch-HHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence 3444444455555543 444566666765 999999999999888777776665443
No 286
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.32 E-value=1.3e+02 Score=17.90 Aligned_cols=54 Identities=13% Similarity=0.013 Sum_probs=32.5
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--chhHHHHHHHHHHHHHHHHH
Q psy5073 36 PLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTV--GSAATYGLLGVICTLGAVFV 89 (115)
Q Consensus 36 p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 89 (115)
.++.|+.++++-...--+++.+.....+|+.+.+ .-.|-.+++.++.+...++.
T Consensus 36 a~s~k~~~~a~klssefIsGilVGa~iG~llD~~agTsPwglIv~lllGf~AG~ln 91 (116)
T COG5336 36 AESIKGYAQAFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGAGVLN 91 (116)
T ss_pred chhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 4566777777776666777777777778887763 22234444444444444433
No 287
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=28.75 E-value=1.6e+02 Score=18.81 Aligned_cols=40 Identities=13% Similarity=0.008 Sum_probs=31.1
Q ss_pred hhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5073 28 WFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLID 67 (115)
Q Consensus 28 ~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (115)
.+..++-.|++.|.+..-.......+.-.+....+.++.+
T Consensus 20 i~~~t~~lp~~~r~~~~~~G~~~A~vlr~if~~~G~~ll~ 59 (176)
T TIGR03717 20 IALAARNLPAHQRKKAIFWGTAGAIVLRILLTAVAVYLLA 59 (176)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788899999998888877777777777777777777
No 288
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=28.67 E-value=1.9e+02 Score=19.52 Aligned_cols=9 Identities=11% Similarity=0.456 Sum_probs=4.2
Q ss_pred HHHHHHHHH
Q psy5073 73 ATYGLLGVI 81 (115)
Q Consensus 73 ~~~~~~~~~ 81 (115)
|.+.+.+++
T Consensus 53 ~~~~i~gi~ 61 (224)
T PF13829_consen 53 WYWLIIGIL 61 (224)
T ss_pred HHHHHHHHH
Confidence 444444443
No 289
>KOG3574|consensus
Probab=27.77 E-value=88 Score=23.41 Aligned_cols=47 Identities=17% Similarity=-0.136 Sum_probs=39.6
Q ss_pred hhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q psy5073 26 IPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSA 72 (115)
Q Consensus 26 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (115)
...+.-+.+.|++.-++-|.+.....++++-.-..+..++.+..+++
T Consensus 389 ~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~ltv~ 435 (510)
T KOG3574|consen 389 SGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLTVK 435 (510)
T ss_pred HHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCcee
Confidence 33457889999999999999999999999998888888888766544
No 290
>COG1972 NupC Nucleoside permease [Nucleotide transport and metabolism]
Probab=27.17 E-value=2.6e+02 Score=20.64 Aligned_cols=66 Identities=12% Similarity=-0.007 Sum_probs=29.9
Q ss_pred hcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHH-HHHHHH-HHHHhhcccCCCCC
Q psy5073 31 MAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLGV-ICTLGA-VFVYTRVPETKNKS 100 (115)
Q Consensus 31 ~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~pet~~~~ 100 (115)
+.+..+.=.|+.-..+... ......++.++.|..- |...-+.+-+. ++.... ++.-...|||++.+
T Consensus 154 vk~~l~~mt~selftv~~~--gmasVsgsilg~Y~~m--gvp~~yllaAs~m~~p~gli~Akii~P~t~~~~ 221 (404)
T COG1972 154 VKPYLGKMSRSELFTVMAS--GMASVSGSILGGYASM--GVPPEYLLAASFMNAPGGLLFAKLINPYTEDEQ 221 (404)
T ss_pred hHHhhhhccHhHHHHHHHh--hHHHHHHHHHHHHHHc--CCCHHHHHHHHHHhcchHHHHHHhcCCCCCCcc
Confidence 4555555555555444422 2333444455555422 22223333332 222233 33345679987665
No 291
>PRK05277 chloride channel protein; Provisional
Probab=26.97 E-value=2.3e+02 Score=20.78 Aligned_cols=25 Identities=20% Similarity=0.199 Sum_probs=17.7
Q ss_pred HHHHhhcccCCCCCHHHHHHHHhcc
Q psy5073 87 VFVYTRVPETKNKSFEAIQAELAMG 111 (115)
Q Consensus 87 ~~~~~~~pet~~~~~~~~~~~~~~~ 111 (115)
.+..++.|+.++....|+++..+++
T Consensus 60 ~l~~~~~p~~~GsGi~~i~~~l~~~ 84 (438)
T PRK05277 60 FLVRRFAPEAGGSGIPEIEGALEGL 84 (438)
T ss_pred HHHHhcCcccCCCCHHHHHHHHcCC
Confidence 4444677998888888887776543
No 292
>PF04226 Transgly_assoc: Transglycosylase associated protein; InterPro: IPR007341 This bacterial protein is predicted to be an integral membrane protein. Some family members have been annotated as transglycosylase-associated proteins, but no experimental evidence is provided. This family was annotated based on the information in P76011 from SWISSPROT.; GO: 0016021 integral to membrane
Probab=26.62 E-value=92 Score=15.27 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q psy5073 72 AATYGLLGVICTLGAVFVY 90 (115)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~ 90 (115)
.+.-++.+++..+..+..+
T Consensus 25 ~~~~~i~aviGAiill~i~ 43 (48)
T PF04226_consen 25 SWGSFIVAVIGAIILLFIY 43 (48)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555444
No 293
>TIGR03078 CH4_NH3mon_ox_C methane monooxygenase/ammonia monooxygenase, subunit C. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit C of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=26.15 E-value=1.7e+02 Score=19.58 Aligned_cols=30 Identities=17% Similarity=0.274 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCHHHH
Q psy5073 75 YGLLGVICTLGAVFVYTRVPETKNKSFEAI 104 (115)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~pet~~~~~~~~ 104 (115)
++.-.++..+......-.+-.||+++++++
T Consensus 51 l~~e~~~e~~~~~~lwg~lWkTRDrnl~~l 80 (229)
T TIGR03078 51 LYVEMVVEALAALILWGYLWKTRDRNLAAL 80 (229)
T ss_pred HHHHHHHHHHHHHHHHHheeeecccchhhc
Confidence 344444455555555556666888877654
No 294
>COG5478 Predicted small integral membrane protein [Function unknown]
Probab=26.13 E-value=53 Score=20.33 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=13.4
Q ss_pred HHHHhhcccCCCCCHHHHHHHH
Q psy5073 87 VFVYTRVPETKNKSFEAIQAEL 108 (115)
Q Consensus 87 ~~~~~~~pet~~~~~~~~~~~~ 108 (115)
++..+++++|..++...++++.
T Consensus 59 ~l~v~liQNtq~rD~aai~aKL 80 (141)
T COG5478 59 FLMVVLIQNTQNRDTAAIQAKL 80 (141)
T ss_pred HHHHhheeccccccHHHHHHHH
Confidence 3445678888777765554443
No 295
>PRK15015 carbon starvation protein A; Provisional
Probab=26.08 E-value=79 Score=24.96 Aligned_cols=63 Identities=17% Similarity=0.024 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhHHH-HHHHHHHHHHHH---HHHhhcccCCCCCHHHHHHHH
Q psy5073 45 SLLMCYSWSCLFLVSKVFMDLIDTVGSAATY-GLLGVICTLGAV---FVYTRVPETKNKSFEAIQAEL 108 (115)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~pet~~~~~~~~~~~~ 108 (115)
=+..-...+ ++.+|..+|.+...+||-..+ |+.....+...+ ...+..-+.+|+++.|+.++.
T Consensus 88 LfGHHFasI-AGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~R~~GrSig~ia~~~ 154 (701)
T PRK15015 88 LFGHHFAAI-AGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRDGRSLGELVKEE 154 (701)
T ss_pred hhHHHHHHH-hccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeeecCCCccHHHHHHHH
Confidence 334444444 778899999999999986333 332222222222 222334556899998875543
No 296
>PHA02692 hypothetical protein; Provisional
Probab=26.02 E-value=1.2e+02 Score=16.41 Aligned_cols=8 Identities=0% Similarity=-0.006 Sum_probs=3.1
Q ss_pred chhHHHHH
Q psy5073 70 GSAATYGL 77 (115)
Q Consensus 70 ~~~~~~~~ 77 (115)
+|.+.+++
T Consensus 44 ~~~~~ii~ 51 (70)
T PHA02692 44 PWTTVFLI 51 (70)
T ss_pred chHHHHHH
Confidence 34333333
No 297
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=24.96 E-value=2.1e+02 Score=18.75 Aligned_cols=61 Identities=10% Similarity=0.055 Sum_probs=35.8
Q ss_pred hhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhH-HHHHHHHHHHHHHHHHH
Q psy5073 30 MMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAA-TYGLLGVICTLGAVFVY 90 (115)
Q Consensus 30 ~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 90 (115)
-..|-++++.|.+-.--........-....+.+.++.+.+|... .|-+-+.+.++...+-.
T Consensus 29 ~lt~~~~~~~r~~ia~~~~l~a~~ill~f~~~G~~iL~~fgIsl~afrIaGGiiL~~ia~~m 90 (201)
T TIGR00427 29 SLTEYYTAAERNKIAKKANISSFIILLIFLVFGDTILKLFGISIDAFRIAGGILLFTIAMDM 90 (201)
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 35667777777766555554445555566677777777777542 45555554444434433
No 298
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=24.82 E-value=1.3e+02 Score=16.38 Aligned_cols=30 Identities=13% Similarity=0.123 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH
Q psy5073 54 CLFLVSKVFMDLIDTVGSAATYGLLGVICTLG 85 (115)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (115)
..++.+++.+++.++... ++..++...++.
T Consensus 19 ~~~iisfi~Gy~~q~~~~--~~~~~~~g~~~~ 48 (76)
T PF06645_consen 19 ISAIISFIVGYITQSFSY--TFYIYGAGVVLT 48 (76)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 345566777777776553 555554444444
No 299
>COG1422 Predicted membrane protein [Function unknown]
Probab=24.30 E-value=2.2e+02 Score=18.86 Aligned_cols=25 Identities=12% Similarity=0.008 Sum_probs=13.2
Q ss_pred hchhHHHHHHHHHHHHHHHHHHhhc
Q psy5073 69 VGSAATYGLLGVICTLGAVFVYTRV 93 (115)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (115)
.+.+++..+.+++..+..-+...++
T Consensus 44 ~~p~lvilV~avi~gl~~~i~~~~l 68 (201)
T COG1422 44 LPPHLVILVAAVITGLYITILQKLL 68 (201)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666666666655544444444333
No 300
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=24.20 E-value=3e+02 Score=20.42 Aligned_cols=47 Identities=11% Similarity=0.025 Sum_probs=33.6
Q ss_pred hcccchhhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5073 21 IGIGPIPWFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVG 70 (115)
Q Consensus 21 ~~~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (115)
.+.++...+|.... ..-..-+|+....+.+.+..++.++|++.+..|
T Consensus 275 Lsf~~lmt~yl~~~---G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riG 321 (432)
T PF06963_consen 275 LSFGGLMTAYLKSQ---GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIG 321 (432)
T ss_pred hcCcHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444443332 555667888888889999999999999998876
No 301
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=24.16 E-value=3.1e+02 Score=20.55 Aligned_cols=36 Identities=14% Similarity=-0.128 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHH
Q psy5073 42 WSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGL 77 (115)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (115)
+-+.+......+.+..+..+.+++-+..+++.+..+
T Consensus 288 ~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~ 323 (438)
T COG2270 288 TELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMI 323 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehH
Confidence 344555666677888888999999888888754433
No 302
>PRK11111 hypothetical protein; Provisional
Probab=24.14 E-value=2.2e+02 Score=18.85 Aligned_cols=61 Identities=8% Similarity=-0.019 Sum_probs=36.3
Q ss_pred hhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhH-HHHHHHHHHHHHHHHHH
Q psy5073 30 MMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAA-TYGLLGVICTLGAVFVY 90 (115)
Q Consensus 30 ~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 90 (115)
-..|-++.++|.+-.--......+.-.+..+.+.++.+.+|... .|-+-+.+.++...+-.
T Consensus 32 slt~~~s~~~r~~ia~~a~l~a~~ill~f~~~G~~iL~~fGIsl~afrIaGGiiL~~ial~M 93 (214)
T PRK11111 32 SMTSHQTAAERNKTNLTANLSVAIILLISLFLGDFILNLFGISIDSFRIAGGILVVTIAMSM 93 (214)
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 35677777777765555544445555566777888888777542 45555554444444443
No 303
>KOG1373|consensus
Probab=23.63 E-value=1.5e+02 Score=21.95 Aligned_cols=38 Identities=11% Similarity=0.006 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHhcc
Q psy5073 74 TYGLLGVICTLGAVFVYTRVPETKNKSFEAIQAELAMG 111 (115)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~pet~~~~~~~~~~~~~~~ 111 (115)
-+.++..+++....+.....-|-++.+.+|+.+++++.
T Consensus 360 ~~i~Yi~fml~sca~FsktWievSgsSarDvAkqlKeQ 397 (476)
T KOG1373|consen 360 HFLVYIVFMLGSCALFSKTWIEVSGSSARDVAKQLKEQ 397 (476)
T ss_pred hhHHHHHHHHHHHHHHHhHHHHHcCCCHHHHHHHHHhc
Confidence 34566666666666666666778888888887777654
No 304
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=23.38 E-value=1.3e+02 Score=15.70 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=11.4
Q ss_pred chhHHHHHHHHHHHHHHHH
Q psy5073 70 GSAATYGLLGVICTLGAVF 88 (115)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~ 88 (115)
||+...++-+.+.++.+.+
T Consensus 4 g~r~~~~~ggfVg~iG~a~ 22 (58)
T PF15061_consen 4 GWRYALFVGGFVGLIGAAL 22 (58)
T ss_pred cccchhhHHHHHHHHHHHH
Confidence 5666666666666655544
No 305
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=22.86 E-value=3.2e+02 Score=20.26 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=19.4
Q ss_pred HHHHhhcccCCCCCHHHHHHHHhcc
Q psy5073 87 VFVYTRVPETKNKSFEAIQAELAMG 111 (115)
Q Consensus 87 ~~~~~~~pet~~~~~~~~~~~~~~~ 111 (115)
++.+.+.||.+++.++|+.+..+..
T Consensus 80 ~~~~~~~p~~~g~Gi~~~i~a~~~~ 104 (443)
T COG0038 80 LLVYKFAPEARGSGIPQAIEALHGR 104 (443)
T ss_pred HHHHHhCccccCCChhHHHHHHhcC
Confidence 4567788999999888887776653
No 306
>PF15192 TMEM213: TMEM213 family
Probab=22.62 E-value=1.5e+02 Score=16.26 Aligned_cols=14 Identities=14% Similarity=0.166 Sum_probs=8.6
Q ss_pred HHHHHHhhchhHHH
Q psy5073 62 FMDLIDTVGSAATY 75 (115)
Q Consensus 62 ~~~~~~~~~~~~~~ 75 (115)
.+|+....||..+|
T Consensus 45 yGWIAAAVGWSLwF 58 (82)
T PF15192_consen 45 YGWIAAAVGWSLWF 58 (82)
T ss_pred hhHHHHHHhHHHHH
Confidence 35667777875444
No 307
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=22.01 E-value=2.9e+02 Score=20.22 Aligned_cols=27 Identities=11% Similarity=0.124 Sum_probs=19.6
Q ss_pred HHHHHHHhhcccCCCCCHHHHHHHHhc
Q psy5073 84 LGAVFVYTRVPETKNKSFEAIQAELAM 110 (115)
Q Consensus 84 ~~~~~~~~~~pet~~~~~~~~~~~~~~ 110 (115)
+...+...+.|+.++.-++|+++..++
T Consensus 50 ~~~~l~~~~~p~a~GsGIp~v~~~l~g 76 (416)
T cd01036 50 ISSGICLYFAPQAAGSGIPEVMAYLNG 76 (416)
T ss_pred HHHHHHHhcCcccCCCCHHHHHHHHcC
Confidence 334455668899999989888776654
No 308
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=21.90 E-value=1.9e+02 Score=17.26 Aligned_cols=11 Identities=18% Similarity=0.456 Sum_probs=6.9
Q ss_pred hhHHHHHHHHH
Q psy5073 38 EAKLWSSSLLM 48 (115)
Q Consensus 38 ~~R~~~~~~~~ 48 (115)
+.|..|.++..
T Consensus 10 ~~R~~al~lif 20 (114)
T PF11023_consen 10 KIRTFALSLIF 20 (114)
T ss_pred HHHHHHHHHHH
Confidence 56666666654
No 309
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=21.66 E-value=1.5e+02 Score=21.21 Aligned_cols=11 Identities=18% Similarity=0.247 Sum_probs=4.1
Q ss_pred HHHHHHHhhcc
Q psy5073 84 LGAVFVYTRVP 94 (115)
Q Consensus 84 ~~~~~~~~~~p 94 (115)
+..++++...|
T Consensus 297 iiG~vvy~~~~ 307 (334)
T PF06027_consen 297 IIGFVVYNLAE 307 (334)
T ss_pred HHHhheEEccC
Confidence 33344343333
No 310
>PF10753 DUF2566: Protein of unknown function (DUF2566); InterPro: IPR019689 This entry is represented by Pseudomonas phage PaP3, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=21.43 E-value=1.4e+02 Score=15.39 Aligned_cols=25 Identities=4% Similarity=0.040 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccc
Q psy5073 71 SAATYGLLGVICTLGAVFVYTRVPE 95 (115)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~pe 95 (115)
|+....+|.+...+..++.++..+|
T Consensus 2 ~~~~l~~Y~ig~~is~~iT~flskD 26 (55)
T PF10753_consen 2 WQKILIFYAIGAVISALITFFLSKD 26 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445566666666666666666655
No 311
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=20.73 E-value=3e+02 Score=19.02 Aligned_cols=9 Identities=11% Similarity=0.110 Sum_probs=4.0
Q ss_pred hHHHHHHHH
Q psy5073 39 AKLWSSSLL 47 (115)
Q Consensus 39 ~R~~~~~~~ 47 (115)
.|.++..+.
T Consensus 194 aRkR~i~f~ 202 (256)
T PF09788_consen 194 ARKRAIIFF 202 (256)
T ss_pred hhhHHHHHH
Confidence 344444444
No 312
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=20.66 E-value=3e+02 Score=19.05 Aligned_cols=48 Identities=4% Similarity=-0.142 Sum_probs=22.0
Q ss_pred hhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHH
Q psy5073 28 WFMMAEIIPLEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATYGLLG 79 (115)
Q Consensus 28 ~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (115)
+.|...-+|-+.|+.|-=.+... .+.....+.+..+...+.+.....+
T Consensus 123 ~~Yt~gP~~l~y~gLGE~~v~i~----~G~l~v~g~~yvq~~~~~~~~ll~s 170 (284)
T TIGR00751 123 ITYTVGSKPYGYAGLGDISVLVF----FGPLAVLGTQYLQAHRVDWVGILPA 170 (284)
T ss_pred HhhcCCCCccccCchHHHHHHHH----HHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 34555556767776554333222 2233334444445544444443333
No 313
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=20.36 E-value=3.3e+02 Score=20.36 Aligned_cols=28 Identities=14% Similarity=0.191 Sum_probs=19.5
Q ss_pred HHHHHHHHhhcccCCCCCHHHHHHHHhc
Q psy5073 83 TLGAVFVYTRVPETKNKSFEAIQAELAM 110 (115)
Q Consensus 83 ~~~~~~~~~~~pet~~~~~~~~~~~~~~ 110 (115)
++..++..++.|+.++.-+.|+++..++
T Consensus 90 li~~~l~~~~~p~a~GsGip~v~~~l~g 117 (466)
T cd03685 90 LVAALLVAYIAPTAAGSGIPEVKGYLNG 117 (466)
T ss_pred HHHHHHHHhcCcccCCCCHHHHHHHHcC
Confidence 3444455567799999988888776653
No 314
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=20.22 E-value=2.4e+02 Score=17.64 Aligned_cols=35 Identities=9% Similarity=0.103 Sum_probs=19.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHH
Q psy5073 37 LEAKLWSSSLLMCYSWSCLFLVSKVFMDLIDTVGSAATY 75 (115)
Q Consensus 37 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (115)
.+....+.++.+....+...+. |.+.+..|.++..
T Consensus 36 ~~~G~~slai~Y~~~~~s~l~~----P~iv~~lg~K~sm 70 (156)
T PF05978_consen 36 AGLGYYSLAILYGSFAISCLFA----PSIVNKLGPKWSM 70 (156)
T ss_pred ccccHHHHHHHHHHHHHHHHhH----HHHHHHHhhHHHH
Confidence 3445666666666655555444 4455555555443
Done!